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Conserved domains on  [gi|139388098|ref|YP_001123290|]
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NADH dehydrogenase subunit K (chloroplast) [Barbarea verna]

Protein Classification

NADH dehydrogenase subunit K( domain architecture ID 10784660)

NADH dehydrogenase subunit K is a component of NDH-1, which shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhK CHL00023
NADH dehydrogenase subunit K
 1-225 0e+00

NADH dehydrogenase subunit K


:

Pssm-ID: 214337  Cd Length: 225  Bit Score: 533.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   1 MNSIKFPVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:CHL00023   1 MNSIEFPLLDRTTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:CHL00023  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139388098 161 IYKDRIRPQRGNRCFTTNHKFFVVGSPHTGNYDQELLYAPSSTSEISTETFFKYKSPVSSNELVN 225
Cdd:CHL00023 161 IYEDRIRSQQENRCFTTNHKFHVVRSTHTGNYDQELLYQSPSTSEIPSETFFKYKSSVSSHELVN 225
 
Name Accession Description Interval E-value
ndhK CHL00023
NADH dehydrogenase subunit K
 1-225 0e+00

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 533.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   1 MNSIKFPVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:CHL00023   1 MNSIEFPLLDRTTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:CHL00023  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139388098 161 IYKDRIRPQRGNRCFTTNHKFFVVGSPHTGNYDQELLYAPSSTSEISTETFFKYKSPVSSNELVN 225
Cdd:CHL00023 161 IYEDRIRSQQENRCFTTNHKFHVVRSTHTGNYDQELLYQSPSTSEIPSETFFKYKSSVSSHELVN 225
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 20-170 4.92e-97

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 279.37  E-value: 4.92e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 98
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 139388098  99 PKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYKDRIRPQR 170
Cdd:COG0377   82 PKWVIAMGACAISGGPYW-DSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYGE 152
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 16-160 6.40e-90

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 261.13  E-value: 6.40e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   16 SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYE 94
Cdd:TIGR01957   1 GVLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSeVFRASPRQADVMIVAGTVTKKMAPALRRLYD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 139388098   95 QMPEPKYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:TIGR01957  81 QMPEPKWVISMGACANSGGMFHT-SYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
42-153 8.20e-40

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 133.09  E-value: 8.20e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   42 SCCFIEFASLIGSRFDF-----DRYGLVPRSSPR----QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 112
Cdd:pfam01058   2 TGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFG 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 139388098  113 GMFST-DSYST-VRGVDKLIPVDVYLPGCPPKPEAVIDAITKL 153
Cdd:pfam01058  82 GIPAAgNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
ndhK CHL00023
NADH dehydrogenase subunit K
 1-225 0e+00

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 533.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   1 MNSIKFPVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:CHL00023   1 MNSIEFPLLDRTTSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:CHL00023  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139388098 161 IYKDRIRPQRGNRCFTTNHKFFVVGSPHTGNYDQELLYAPSSTSEISTETFFKYKSPVSSNELVN 225
Cdd:CHL00023 161 IYEDRIRSQQENRCFTTNHKFHVVRSTHTGNYDQELLYQSPSTSEIPSETFFKYKSSVSSHELVN 225
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
1-160 1.46e-100

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 289.19  E-value: 1.46e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   1 MNSIKFPVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
Cdd:PRK06411   4 KDEIVTMGLEEELNKGVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:PRK06411  84 LTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYH-YSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQS 162
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 20-170 4.92e-97

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 279.37  E-value: 4.92e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 98
Cdd:COG0377    2 TTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPE 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 139388098  99 PKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYKDRIRPQR 170
Cdd:COG0377   82 PKWVIAMGACAISGGPYW-DSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYGE 152
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 16-160 6.40e-90

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 261.13  E-value: 6.40e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   16 SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYE 94
Cdd:TIGR01957   1 GVLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSeVFRASPRQADVMIVAGTVTKKMAPALRRLYD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 139388098   95 QMPEPKYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:TIGR01957  81 QMPEPKWVISMGACANSGGMFHT-SYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
14-160 2.24e-67

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 208.30  E-value: 2.24e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  14 KNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRL 92
Cdd:PRK14819  13 KQGVLLTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRL 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 139388098  93 YEQMPEPKYVIAMGACTITGGMFStDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:PRK14819  93 YNQMPEPRYVISMGACATSGGPFR-DGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQ 159
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 8-160 1.02e-64

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 198.95  E-value: 1.02e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   8 VLD-RTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 86
Cdd:PRK14813   3 LLDaGISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMA 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 139388098  87 PSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:PRK14813  83 ERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRME 156
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 17-160 2.07e-64

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 197.82  E-value: 2.07e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  17 VISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 95
Cdd:PRK14815  18 VVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRRIYDQ 97

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 139388098  96 MPEPKYVIAMGACTITGGMFStdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:PRK14815  98 MPEPKWVIAMGACASSGGMYR--SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTE 160
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
22-160 6.49e-64

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 196.67  E-value: 6.49e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPK 100
Cdd:PRK14816  31 LDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPK 110

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098 101 YVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
Cdd:PRK14816 111 YVIAVGGCAVSGGPFKK-SYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIE 169
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
12-170 1.49e-62

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 208.09  E-value: 1.49e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  12 TTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLV 90
Cdd:PRK13292   2 TIPENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSIL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  91 RLYEQMPEPKYVIAMGACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREiykdrIRPQR 170
Cdd:PRK13292  82 RLYEQMAEPKWVISMGSCANSGGMY--DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRRE-----ERPAR 154
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 19-171 9.25e-61

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 188.24  E-value: 9.25e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  19 STTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 98
Cdd:PRK14818  18 TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQMPE 97

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 139388098  99 PKYVIAMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYKDRIRPQRG 171
Cdd:PRK14818  98 PKYVISMGSCSNCGGLFQL-GYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEPWSTKRRPAAQ 169
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
19-169 1.27e-56

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 177.71  E-value: 1.27e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  19 STTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV-PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMP 97
Cdd:PRK14820  20 ATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSErPSFSPRQADMLMVMGTIAKKMAPVLKQVYLQMA 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 139388098  98 EPKYVIAMGACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYKDRIRPQ 169
Cdd:PRK14820 100 EPRWVVAVGACASSGGIF--DTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNESLRRRNSPE 169
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
33-161 7.78e-55

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 171.90  E-value: 7.78e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  33 SLWPLLYGT-SC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACT 109
Cdd:COG3260    6 SLWIRHVDAgSCngCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVVAVGDCA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 139388098 110 ITGGMFsTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREI 161
Cdd:COG3260   86 CSGGVF-RDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKL 136
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
28-163 1.51e-54

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 172.45  E-value: 1.51e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  28 WSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 106
Cdd:PRK14817  31 WARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAaMPRFSPRQADLLMVVGTVNCKQAPILQRVYEQMADPKWVMAFG 110

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 139388098 107 ACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYK 163
Cdd:PRK14817 111 VCASSGGFY--DNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQSHK 165
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 21-157 3.28e-54

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 172.13  E-value: 3.28e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098  21 TLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV-PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
Cdd:PRK14814  22 NLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAErPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEP 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 139388098 100 KYVIAMGACTITGGMFSTdsYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKI 157
Cdd:PRK14814 102 KFVISVGACASSGGMFHT--YGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKL 157
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
42-153 8.20e-40

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 133.09  E-value: 8.20e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098   42 SCCFIEFASLIGSRFDF-----DRYGLVPRSSPR----QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 112
Cdd:pfam01058   2 TGCTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFG 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 139388098  113 GMFST-DSYST-VRGVDKLIPVDVYLPGCPPKPEAVIDAITKL 153
Cdd:pfam01058  82 GIPAAgNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
100-175 1.15e-10

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 59.56  E-value: 1.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139388098 100 KYVIAMGACTITGG------MFSTD------------------------SYSTVRGVDKLIPVDVYLPGCPPKPEAVIDA 149
Cdd:COG1941   79 KILVALGACAVTGGipalrnLYDLEellervygetpstnpqipgeelpeLLDRVRPLSEVVKVDYELPGCPPDPDQILEV 158

                         90       100
                 ....*....|....*....|....*....
gi 139388098 150 ITK-LRKKIAREIYKDRIR--PQRGNRCF 175
Cdd:COG1941  159 LTAlLEGRLPELPGYSVCVecKRRENVCL 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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