|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-595 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 761.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 1 MPTVSVNKQQLFDLLGKNYTNDEFDELCFEFGIELDEDTTEEALKT------GEEPEL---------KIEIGANRYDLLC 65
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRkekhldEEEDGGadddeeviyKIDVPANRYDLLC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 66 IEGIAQSLNEYLGRSSTPTYKLTAPTT----KLYIEKSTEQVRPYATAAILRNFKFTEKNYASFIALQDKLHSNLCRNRS 141
Cdd:PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKgsilKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 142 LVAIGTHNLDSIQGPFYYKGLAPKEINFIPLNQTKKFNGEELIEFYKTpEQKnnIGRFVHIIENSPVYPVILDSNDVVCS 221
Cdd:PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKS-DMK--LKKFLHIIENSPVFPVIYDSNRTVLS 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 222 LPPLINSEHSKINLETKNIFIEITANDKTKAEIVLNQMVAMFSRYCDEPFTVEPVEIVSeHNGESRMAPDFSERKMDVSI 301
Cdd:PLN02265 238 LPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVY-PDGKSTVYPDLSVRTMEVDL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 302 PYINSALGLQQTPEEIIQCIKKMSLHGEASKTDEAVLHVTIPITRPDVLHPCDIMEDAAIGYGYNNLPKgeKLSNANFIA 381
Cdd:PLN02265 317 SYINSSIGVSLDAEEVASLLNKMQLQAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPK--RKPKSMTVG 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 382 SPLPINKISDIFRVASSQASWLEVLPLTLCSHDENFKFLRLEDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKH 461
Cdd:PLN02265 395 KQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDA 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 462 SLPIKVFETGDVVFKNEALERKSYNERHWGAIYAGKNSGFEIIQGLLGKIMQTFRTQWVadygKASTGRGYWIEQDDTlA 541
Cdd:PLN02265 475 PKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFV----EIGDNNGYYVEPSNE-P 549
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 50287233 542 TYFPGRGAKIMFRskegeqAKQIGHLGVLHPEVMSNFEVPYAASYVELNAEVFL 595
Cdd:PLN02265 550 EYFPGRQASIIYK------GKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
1-595 |
0e+00 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 678.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 1 MPTVSVNKQQLFDLLgkNYTNdeFDELCFEFGIEldEDTTEEALKTGeePELKIEIGANRYDLLCIEGIAQSLNEYLGRS 80
Cdd:TIGR00471 1 MPTVTVYKDDLEDLL--IGTD--RDEILEELPMM--GDEIEGFDEES--PEIKVEFNPNRPDLLSVEGLARSLRGYLGIE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 81 STPTYKLTAPT-TKLYIEKSTEQVRPYATAAILRNFKFTEKNYASFIALQDKLHSNLCRNRSLVAIGTHNLDSIQGPFYY 159
Cdd:TIGR00471 73 KGLKSYDSKKGdVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 160 KGLAPKEINFIPLNQTKKFNGEELIEfyktpEQKNNIgRFVHIIENSPVYPVILDSNDVVCSLPPLINSEHSKINLETKN 239
Cdd:TIGR00471 153 KAVSPNGIKFVPLNSDQEMTPDEILE-----EHPKGI-RYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 240 IFIEITANDKTKAEIVLNQMVAMFSRYCDEPFTVEPVEIVSEHNGESRMAPDFserkMDVSIPYINSALGLQQTPEEIIQ 319
Cdd:TIGR00471 227 LLIDVTGTDKTAVEITLNIACTMFADRGDGRITVVEVERPDEHLGQPNLAPRF----MEVSVEYINSLLGLNLSADEIAH 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 320 CIKKMSLHGEASKTdeaVLHVTIPITRPDVLHPCDIMEDAAIGYGYNNLPKGEKLSNANFIASPLpiNKISDIFRVASSQ 399
Cdd:TIGR00471 303 SLKKMRLDAVQSDE---KLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPL--NKVSDIIREIMVG 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 400 ASWLEVLPLTLCSHDENFKFLRLEDDGKqvVKLENPKTLEYQVVRTTLLPGILKTVKENRKHSLPIKVFETGDVVFKNEA 479
Cdd:TIGR00471 378 LGFQEVIPLTLTSEEVNFKRMRIEDNND--VKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDK 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 480 LErksYNERHWGAIYAGKNSGFeiiqgllgkiMQTFRTQWVADYGKASTGRGYWIEQDDTlATYFPGRGAKIMFRSkege 559
Cdd:TIGR00471 456 SE---TRSRVVTKLAVGITHSE----------ANFNEIKSIVAALARELGIEYEIEESEH-PSFIPGRGAKIVFEG---- 517
|
570 580 590
....*....|....*....|....*....|....*.
gi 50287233 560 qaKQIGHLGVLHPEVMSNFEVPYAASYVELNAEVFL 595
Cdd:TIGR00471 518 --KAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
385-594 |
5.14e-43 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 152.80 E-value: 5.14e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 385 PINKISDIFRVASSQASWLEVLPLTLCSHDENFKFlrlEDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHS-L 463
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAELF---DGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 464 PIKVFETGDVVFKNEALERksyNERHWGAIYAGK-----------NSGFEIIQGLLGKIMQTFRtqwvadygkasTGRGY 532
Cdd:cd00769 78 PLRLFEIGRVFLKDEDGPE---EEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRALG-----------IIVEF 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 50287233 533 WIEQDDTlATYFPGRGAKIMFRSKEgeqakqIGHLGVLHPEVMSNFEVPYAASYVELNAEVF 594
Cdd:cd00769 144 ELEELDA-DLFHPGRSAKIYVNGEV------IGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
385-590 |
5.43e-42 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 150.39 E-value: 5.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 385 PINKISDIFRVASSQASWLEVLPLTLCSHDENFKFLRlEDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHSLP 464
Cdd:pfam17759 17 PEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKLLE-DDPRRKAVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 465 -IKVFETGDVVFKNEaLERKSYNERHWGAIYAGK-----------NSGFEIIQGLLGKIMQTFRTQwvadygkastgrGY 532
Cdd:pfam17759 96 dVRLFEIGRVFLPDE-LEELPREPRRLAGLLTGKrlpeswqgkarPVDFYDLKGIVEALLAALGID------------DY 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 50287233 533 WIEQDDtLATYFPGRGAKIMFRSKEgeqakqIGHLGVLHPEVMSNFEVPYAASYVELN 590
Cdd:pfam17759 163 EFEAAD-HPALHPGRSAEILVGGKV------IGFIGELHPEVAKNFDLPQPVYVFELD 213
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
104-268 |
4.96e-28 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 110.43 E-value: 4.96e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 104 RPYATAAILRNFKfteKNYASFIALQDKLHSNLCRNRSlVAIGTHNLDSIQGPFYYKGLAPKEI--NFIPLNQTKKfnGE 181
Cdd:smart00873 1 CPRYLGRVIRGVK---NTRPSPEWLQERLHRAGIRPIN-NVVDITNYVSLETGQPLHAFDLDKIkgKDIPLRRAKE--GE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 182 ELIEFYKTPEqknNIGRFVHIIENsPVYPVIL-----------DSNDVVCSLPPLINSEHS-KINLETKNIFIEITAN-- 247
Cdd:smart00873 75 KFETLDGKEY---ELDEGDLVIAD-DEGPLALagvmggeesevTENTTVIFLEPAIFSPRTiRITARTLNLFTDASGRfe 150
|
170 180
....*....|....*....|....
gi 50287233 248 ---DKTKAEIVLNQMVAMFSRYCD 268
Cdd:smart00873 151 rgvDPELVELALDRAAALLLEICG 174
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
211-595 |
6.48e-26 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 112.95 E-value: 6.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 211 VILDSNDVVCsLPPLINSEHSKINLETKNIFIE--------I--TAN----------------DKTKAEIVLNQMVAMFS 264
Cdd:COG0072 303 VIADDEGPLA-LAGVMGGEDSEVTEETTDVLLEsayfdpvsIrrTARrlglhsdasyrfergvDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 265 RYCDEpftvEPVEIVSEHNGEsrmapDFSERKMDVSIPYINSALGLQQTPEEIIQCIKkmSLHGEASKTDEaVLHVTIPI 344
Cdd:COG0072 382 EIAGG----EVGPGIVDVYPE-----PPEPKTITLRLARINRLLGVEIPAEEIEEILE--RLGFEVEEDGD-GLTVTVPS 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 345 TRPDVLHPCDIMEDAA-IgYGYNNLPkgEKLSNANFIASPLP-----INKISDIFRvassQASWLEVLPLTLCSHDEnFK 418
Cdd:COG0072 450 WRFDIEIEADLIEEVArI-YGYDNIP--STLPRAPLAGGGLTeaqrlRRRVRRALA----ARGYQEVITYSFVSPED-AD 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 419 FLRLEDDgkqVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHSLP-IKVFETGDVVFKNEALERK-----------SYN 486
Cdd:COG0072 522 LFGLRRE---AVRLANPISEDLSVMRTSLLPGLLEAAAYNLNRGQKdVRLFEIGRVFLPDEGEEPReplhlagvltgNRE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 487 ERHWGAiyAGKNSGF----EIIQGLLgkimqtfrtqwvadygkASTGRGYWIEQDDTLATYFPGRGAKIMFRSKEgeqak 562
Cdd:COG0072 599 PESWGG--KARPVDFfdlkGDVEALL-----------------AALGVPKLEFEAAEHPALHPGRSAEILLGGKV----- 654
|
410 420 430
....*....|....*....|....*....|...
gi 50287233 563 qIGHLGVLHPEVMSNFEVPYAASYVELNAEVFL 595
Cdd:COG0072 655 -IGFIGELHPKVLKALDLPGPVYVFELDLDALL 686
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-595 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 761.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 1 MPTVSVNKQQLFDLLGKNYTNDEFDELCFEFGIELDEDTTEEALKT------GEEPEL---------KIEIGANRYDLLC 65
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRkekhldEEEDGGadddeeviyKIDVPANRYDLLC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 66 IEGIAQSLNEYLGRSSTPTYKLTAPTT----KLYIEKSTEQVRPYATAAILRNFKFTEKNYASFIALQDKLHSNLCRNRS 141
Cdd:PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKgsilKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 142 LVAIGTHNLDSIQGPFYYKGLAPKEINFIPLNQTKKFNGEELIEFYKTpEQKnnIGRFVHIIENSPVYPVILDSNDVVCS 221
Cdd:PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKS-DMK--LKKFLHIIENSPVFPVIYDSNRTVLS 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 222 LPPLINSEHSKINLETKNIFIEITANDKTKAEIVLNQMVAMFSRYCDEPFTVEPVEIVSeHNGESRMAPDFSERKMDVSI 301
Cdd:PLN02265 238 LPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVY-PDGKSTVYPDLSVRTMEVDL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 302 PYINSALGLQQTPEEIIQCIKKMSLHGEASKTDEAVLHVTIPITRPDVLHPCDIMEDAAIGYGYNNLPKgeKLSNANFIA 381
Cdd:PLN02265 317 SYINSSIGVSLDAEEVASLLNKMQLQAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPK--RKPKSMTVG 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 382 SPLPINKISDIFRVASSQASWLEVLPLTLCSHDENFKFLRLEDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKH 461
Cdd:PLN02265 395 KQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDA 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 462 SLPIKVFETGDVVFKNEALERKSYNERHWGAIYAGKNSGFEIIQGLLGKIMQTFRTQWVadygKASTGRGYWIEQDDTlA 541
Cdd:PLN02265 475 PKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFV----EIGDNNGYYVEPSNE-P 549
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 50287233 542 TYFPGRGAKIMFRskegeqAKQIGHLGVLHPEVMSNFEVPYAASYVELNAEVFL 595
Cdd:PLN02265 550 EYFPGRQASIIYK------GKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
1-595 |
0e+00 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 678.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 1 MPTVSVNKQQLFDLLgkNYTNdeFDELCFEFGIEldEDTTEEALKTGeePELKIEIGANRYDLLCIEGIAQSLNEYLGRS 80
Cdd:TIGR00471 1 MPTVTVYKDDLEDLL--IGTD--RDEILEELPMM--GDEIEGFDEES--PEIKVEFNPNRPDLLSVEGLARSLRGYLGIE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 81 STPTYKLTAPT-TKLYIEKSTEQVRPYATAAILRNFKFTEKNYASFIALQDKLHSNLCRNRSLVAIGTHNLDSIQGPFYY 159
Cdd:TIGR00471 73 KGLKSYDSKKGdVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 160 KGLAPKEINFIPLNQTKKFNGEELIEfyktpEQKNNIgRFVHIIENSPVYPVILDSNDVVCSLPPLINSEHSKINLETKN 239
Cdd:TIGR00471 153 KAVSPNGIKFVPLNSDQEMTPDEILE-----EHPKGI-RYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 240 IFIEITANDKTKAEIVLNQMVAMFSRYCDEPFTVEPVEIVSEHNGESRMAPDFserkMDVSIPYINSALGLQQTPEEIIQ 319
Cdd:TIGR00471 227 LLIDVTGTDKTAVEITLNIACTMFADRGDGRITVVEVERPDEHLGQPNLAPRF----MEVSVEYINSLLGLNLSADEIAH 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 320 CIKKMSLHGEASKTdeaVLHVTIPITRPDVLHPCDIMEDAAIGYGYNNLPKGEKLSNANFIASPLpiNKISDIFRVASSQ 399
Cdd:TIGR00471 303 SLKKMRLDAVQSDE---KLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPL--NKVSDIIREIMVG 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 400 ASWLEVLPLTLCSHDENFKFLRLEDDGKqvVKLENPKTLEYQVVRTTLLPGILKTVKENRKHSLPIKVFETGDVVFKNEA 479
Cdd:TIGR00471 378 LGFQEVIPLTLTSEEVNFKRMRIEDNND--VKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDK 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 480 LErksYNERHWGAIYAGKNSGFeiiqgllgkiMQTFRTQWVADYGKASTGRGYWIEQDDTlATYFPGRGAKIMFRSkege 559
Cdd:TIGR00471 456 SE---TRSRVVTKLAVGITHSE----------ANFNEIKSIVAALARELGIEYEIEESEH-PSFIPGRGAKIVFEG---- 517
|
570 580 590
....*....|....*....|....*....|....*.
gi 50287233 560 qaKQIGHLGVLHPEVMSNFEVPYAASYVELNAEVFL 595
Cdd:TIGR00471 518 --KAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
385-594 |
5.14e-43 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 152.80 E-value: 5.14e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 385 PINKISDIFRVASSQASWLEVLPLTLCSHDENFKFlrlEDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHS-L 463
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAELF---DGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 464 PIKVFETGDVVFKNEALERksyNERHWGAIYAGK-----------NSGFEIIQGLLGKIMQTFRtqwvadygkasTGRGY 532
Cdd:cd00769 78 PLRLFEIGRVFLKDEDGPE---EEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRALG-----------IIVEF 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 50287233 533 WIEQDDTlATYFPGRGAKIMFRSKEgeqakqIGHLGVLHPEVMSNFEVPYAASYVELNAEVF 594
Cdd:cd00769 144 ELEELDA-DLFHPGRSAKIYVNGEV------IGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
385-590 |
5.43e-42 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 150.39 E-value: 5.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 385 PINKISDIFRVASSQASWLEVLPLTLCSHDENFKFLRlEDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHSLP 464
Cdd:pfam17759 17 PEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKLLE-DDPRRKAVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 465 -IKVFETGDVVFKNEaLERKSYNERHWGAIYAGK-----------NSGFEIIQGLLGKIMQTFRTQwvadygkastgrGY 532
Cdd:pfam17759 96 dVRLFEIGRVFLPDE-LEELPREPRRLAGLLTGKrlpeswqgkarPVDFYDLKGIVEALLAALGID------------DY 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 50287233 533 WIEQDDtLATYFPGRGAKIMFRSKEgeqakqIGHLGVLHPEVMSNFEVPYAASYVELN 590
Cdd:pfam17759 163 EFEAAD-HPALHPGRSAEILVGGKV------IGFIGELHPEVAKNFDLPQPVYVFELD 213
|
|
| PhetRS_B1 |
pfam18262 |
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human ... |
1-79 |
6.48e-32 |
|
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human cytosolic phenylalanyl tRNA synthetase beta subunit.
Pssm-ID: 408077 Cd Length: 83 Bit Score: 118.29 E-value: 6.48e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 1 MPTVSVNKQQLFDLLGKNYTNDEFDELCFEFGIELDEDTTEEALKTG----EEPELKIEIGANRYDLLCIEGIAQSLNEY 76
Cdd:pfam18262 1 MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQLKTswrsEEVVYKIDIPANRYDLLCVEGLATALLIF 80
|
...
gi 50287233 77 LGR 79
Cdd:pfam18262 81 KGK 83
|
|
| pheT |
PRK00629 |
phenylalanyl-tRNA synthetase subunit beta; Reviewed |
211-595 |
1.25e-31 |
|
phenylalanyl-tRNA synthetase subunit beta; Reviewed
Pssm-ID: 234804 [Multi-domain] Cd Length: 791 Bit Score: 130.68 E-value: 1.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 211 VILDSNDVVcSLPPLINSEHSKINLETKNIFIEI----------TA---NDKTKA-------------EIVLNQMVAMFS 264
Cdd:PRK00629 302 VIADDKKPL-ALAGVMGGEDSEVTENTTNVLLESayfdpvsirkTArrlGLRTDAsyrfergvdpaltLLALERATALIL 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 265 RYCDEpftvEPVEIVSEHNGESRmapdfsERKMDVSIPYINSALGLQQTPEEIIQCIKKmsLHGEASKTDEAVLHVTIPI 344
Cdd:PRK00629 381 ELGGG----EVVEGVVDVYPLPK------EPTITLRLERINRLLGTEISDEEIVDILKR--LGFEVTEVDGDGLTVTVPS 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 345 TRPDVLHPCDIMEDAA-IgYGYNNLPkgEKLSNANFIASPLPINKISdiFRVASSQASWL---EVLPLTLCSHDENFKFl 420
Cdd:PRK00629 449 WRFDIEIEEDLVEEVArI-YGYDNIP--STPPVAALTMGGLTEAQRL--LRRLRRALAALgyqEVITYSFVSPEDAKLF- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 421 rleDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHSLP-IKVFETGDVVFKNEAL--ERK--------SYNERH 489
Cdd:PRK00629 523 ---GLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKdVALFEIGRVFLPDGDLprEPEhlagvltgNRVEES 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 490 WGaiyAGKNSGF----EIIQGLLGKIMQTFRTqwvadygkastgrgywIEQDDTLATYFPGRGAKIMFRSKEgeqakqIG 565
Cdd:PRK00629 600 WG---GKRPVDFfdlkGDVEALLEALGLPEVE----------------FVAEFEAAALHPGRSAEIYLDGKV------IG 654
|
410 420 430
....*....|....*....|....*....|
gi 50287233 566 HLGVLHPEVMSNFEVPYAASYVELNAEVFL 595
Cdd:PRK00629 655 FIGELHPKVLKKLDLPGRTYVFELDLDALL 684
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
104-268 |
4.96e-28 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 110.43 E-value: 4.96e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 104 RPYATAAILRNFKfteKNYASFIALQDKLHSNLCRNRSlVAIGTHNLDSIQGPFYYKGLAPKEI--NFIPLNQTKKfnGE 181
Cdd:smart00873 1 CPRYLGRVIRGVK---NTRPSPEWLQERLHRAGIRPIN-NVVDITNYVSLETGQPLHAFDLDKIkgKDIPLRRAKE--GE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 182 ELIEFYKTPEqknNIGRFVHIIENsPVYPVIL-----------DSNDVVCSLPPLINSEHS-KINLETKNIFIEITAN-- 247
Cdd:smart00873 75 KFETLDGKEY---ELDEGDLVIAD-DEGPLALagvmggeesevTENTTVIFLEPAIFSPRTiRITARTLNLFTDASGRfe 150
|
170 180
....*....|....*....|....
gi 50287233 248 ---DKTKAEIVLNQMVAMFSRYCD 268
Cdd:smart00873 151 rgvDPELVELALDRAAALLLEICG 174
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
211-595 |
6.48e-26 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 112.95 E-value: 6.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 211 VILDSNDVVCsLPPLINSEHSKINLETKNIFIE--------I--TAN----------------DKTKAEIVLNQMVAMFS 264
Cdd:COG0072 303 VIADDEGPLA-LAGVMGGEDSEVTEETTDVLLEsayfdpvsIrrTARrlglhsdasyrfergvDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 265 RYCDEpftvEPVEIVSEHNGEsrmapDFSERKMDVSIPYINSALGLQQTPEEIIQCIKkmSLHGEASKTDEaVLHVTIPI 344
Cdd:COG0072 382 EIAGG----EVGPGIVDVYPE-----PPEPKTITLRLARINRLLGVEIPAEEIEEILE--RLGFEVEEDGD-GLTVTVPS 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 345 TRPDVLHPCDIMEDAA-IgYGYNNLPkgEKLSNANFIASPLP-----INKISDIFRvassQASWLEVLPLTLCSHDEnFK 418
Cdd:COG0072 450 WRFDIEIEADLIEEVArI-YGYDNIP--STLPRAPLAGGGLTeaqrlRRRVRRALA----ARGYQEVITYSFVSPED-AD 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 419 FLRLEDDgkqVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHSLP-IKVFETGDVVFKNEALERK-----------SYN 486
Cdd:COG0072 522 LFGLRRE---AVRLANPISEDLSVMRTSLLPGLLEAAAYNLNRGQKdVRLFEIGRVFLPDEGEEPReplhlagvltgNRE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 487 ERHWGAiyAGKNSGF----EIIQGLLgkimqtfrtqwvadygkASTGRGYWIEQDDTLATYFPGRGAKIMFRSKEgeqak 562
Cdd:COG0072 599 PESWGG--KARPVDFfdlkGDVEALL-----------------AALGVPKLEFEAAEHPALHPGRSAEILLGGKV----- 654
|
410 420 430
....*....|....*....|....*....|...
gi 50287233 563 qIGHLGVLHPEVMSNFEVPYAASYVELNAEVFL 595
Cdd:COG0072 655 -IGFIGELHPKVLKALDLPGPVYVFELDLDALL 686
|
|
| pheT_bact |
TIGR00472 |
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ... |
176-590 |
3.55e-24 |
|
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273097 [Multi-domain] Cd Length: 797 Bit Score: 107.38 E-value: 3.55e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 176 KKFNGEELIEFYKTPEQKNNIGRFVHIIENSPVypVILDSNDVVCsLPPLINSEHSKINLETKNIFIEItAN-------- 247
Cdd:TIGR00472 272 DKIEGNIVVRSAKEGESFTTLDGKERELKKGDL--VIADDKKPLA-IAGVMGGKESGVTDTTTNIFLES-AYfnpesirk 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 248 -------------------DKTKAEIVLNQMVAMFSRYCDEPftVEPVEIVSEHngesrmaPDFSERKMDVSIPYINSAL 308
Cdd:TIGR00472 348 tarrlgistdssyrfergvDPELTELALDRALNLILEIFGGE--VISVVSDNYK-------EKAKEKKISLRIKKLNKIL 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 309 GLQQTPEEIIQCIKkmSLHGEASKTDEAVLhVTIPITRPDVLHPCDIMEDAAIGYGYNNLP--------KGEKLSNANfi 380
Cdd:TIGR00472 419 GIELSDEEVRDILK--RLGFKVEKQKDGWE-VTVPSYRHDIEIEEDLIEEIARIYGYDNIPaeplsvssKLNKNNENY-- 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 381 aspLPINKISDIFRVASSQaswlEVLPLTLCSHDENFKFLRLEDdgKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRK 460
Cdd:TIGR00472 494 ---LLLRKLRTLLVGLGLN----EVITYSFVDPEKAEKFNFPKL--ENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQN 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 461 HSLP-IKVFETGDVVFKN-EALERKSY---------NERHWGAiyAGKNSGFEIIQGLLGKIMQTFRTQWVADYGKASTG 529
Cdd:TIGR00472 565 RKNKdVKIFEIGKVFAKDgEAVKEQLRlailisgekNPSSWNH--KEEKVDFYDLKGDVESLLELLGLSDDVYFKNTAEN 642
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50287233 530 RGywieqddtlatYFPGRGAKIMFRSkegeqaKQIGHLGVLHPEVMSNFEVPYAASYVELN 590
Cdd:TIGR00472 643 EE-----------LHPGQSATIYLKG------KKIGFIGELHPEIAKKYDLKEPTFVFELD 686
|
|
| B5 |
pfam03484 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
297-365 |
1.68e-19 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 460942 [Multi-domain] Cd Length: 67 Bit Score: 82.44 E-value: 1.68e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50287233 297 MDVSIPYINSALGLQQTPEEIIQCIKKMSLhgEASKTDEAVLHVTIPITRPDVLHPCDIMEDAAIGYGY 365
Cdd:pfam03484 1 ITLRLDRINRLLGIDLSAEEIVEILERLGF--EVEEEDGDTLTVTVPSYRPDILHEADLIEEVARIYGY 67
|
|
| B5 |
smart00874 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
295-365 |
9.92e-17 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 197942 [Multi-domain] Cd Length: 68 Bit Score: 74.84 E-value: 9.92e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50287233 295 RKMDVSIPYINSALGLQQTPEEIIQCIKKMSLHGEASKTdeaVLHVTIPITRPDVLHPCDIMEDAAIGYGY 365
Cdd:smart00874 1 RTITLRLERINRLLGLEILAEEIEEILKRLGFEVEVSGD---TLEVTVPSYRFDILIEADLIEEVARIYGY 68
|
|
| B3_4 |
pfam03483 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
103-267 |
1.47e-14 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 427327 [Multi-domain] Cd Length: 174 Bit Score: 71.81 E-value: 1.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 103 VRPYATAAILRNFKFTEKnyaSFIALQDKLHSnlCRNRSL---------------VAIGTHNLDSIQGPFYykglapkei 167
Cdd:pfam03483 1 ACPRYFGRVIRGVKKNRP---SPEWLQRRLRR--AGIRPInnvvditnyvmlelgQPLHAFDLDKIAGDIV--------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 168 nfIPLNQTkkfnGEELIEFYktpEQKNNIgrfvhiienSPVYPVILDSNDVVcSLPPLINSEHSKINLETKNIFIEITA- 246
Cdd:pfam03483 67 --VRLAKG----GEKFTTLD---GKEREL---------DPGDLVIADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGf 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 50287233 247 -------------------------NDKTKAEIVLNQMVAMFSRYC 267
Cdd:pfam03483 128 dpvairktarrlglrtdasyrfergVDPELVEAALDRATALLLELC 173
|
|
| syfB |
CHL00192 |
phenylalanyl-tRNA synthetase beta chain; Provisional |
42-593 |
1.18e-13 |
|
phenylalanyl-tRNA synthetase beta chain; Provisional
Pssm-ID: 214391 [Multi-domain] Cd Length: 704 Bit Score: 73.97 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 42 EALKTGEEPELKIEIG--ANRYDLLCIEGIAQSLNEYLGRSSTpTYKLTAPTTKLYIEKSTEQVRP-------YATAAIL 112
Cdd:CHL00192 37 LSVKIGGESDIILDISstANRSDVLSIQGLSREISALFNSDPI-KLKYYNPSISWFDKLKNLISNDssklncsMFIAVII 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 113 RNFKftekNYASFIALQDKLHSnlCRNRSLvaigtHNLDSIQGPFYYKGLAPkeINFIPLNQTKKFNGEELIEFyktpEQ 192
Cdd:CHL00192 116 ENIE----IKDSPKWLQNRLSS--SGFKSL-----NNLTDIQNYIMLETGQP--IEIYDLDKIYSKNTTSSLAL----SS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 193 KNNIGRFVHIIENSPVYPV-----ILDSNDVVCSLPPLINSEHSKINLETKNIFIEITANDK---TKAEIVLNQMVAMFS 264
Cdd:CHL00192 179 KFALQKSSFIASNSKNIELennilVVQANNVIISIAGIISNEEIICDKNTKSILIEASIFDAaviRKSSRKLGLRTDRSI 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 265 RYCD-------EPFTVEPVEIVSEHNGESRMAPDF-------SERKMDVSIPYINSALGLQQ--------TPEEIIQCIK 322
Cdd:CHL00192 259 RYEKslkndnlLEAYYRLVSLLRILNPKLKCKFHFiykkiknSSRRIKLSYKKIKDILGPIKintntrylSPKEITNALK 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 323 KMSLHgEASKTDEAVLHVTIPITRP-DVLHPCDIMEDAAIGYGYNN----LPKGEKLSNANFIASPlpINKISDIFRVas 397
Cdd:CHL00192 339 RLNFK-ITYDSLKLNWEVLIPSYRKdDIVREIDVIEEIARIYGFNNflskLPNIKFIGRLDIDYNT--RDKIRSYLRN-- 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 398 sqaswlevLPLTLCSHdenFKFLRLEDDGKQVVKLENPKTLEYQVVRTTLLPGILKTVKENRKHS-LPIKVFETGDvVFK 476
Cdd:CHL00192 414 --------LGLTELIH---YSLVKQESFSKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGnSTLEGFEIGH-VFN 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 477 NeaLERKSYNERHWGAIYAG----KNSGFEIIQGL-----LGKIMQTFR-----TQWVadygkastgrgyWIEQDDTLAT 542
Cdd:CHL00192 482 L--DSSSIIEETELAGGIFGgidiRSSWSEKAQSLnwfeaKGIIENFFQklnlpIYWK------------KYSDLDEKIN 547
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 50287233 543 YFPGRGAKIMFrskegEQAKQIGHLGVLHPEVMSNFEVPYAASYVELNAEV 593
Cdd:CHL00192 548 FHPYCTSEIFL-----SNGQKIGIFGQLHPLLANKLNLNTEIYLFEINLDI 593
|
|
| B3/B4 |
COG3382 |
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only] ... |
140-285 |
1.53e-09 |
|
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only];
Pssm-ID: 442609 [Multi-domain] Cd Length: 233 Bit Score: 58.71 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50287233 140 RSLVAIGTHNLDSIQGPFYYkGLAPKEINFIPLnqtkkfnGEELIEfyktpeqknnigrfvHIIENSPVYpviLDSNDVV 219
Cdd:COG3382 111 RYLLPIGGYDLDKIEGDLRL-RLARGGESFLPI-------GGDEEE---------------PPEPGEVVY---ADDEGVF 164
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50287233 220 CSLPPLINSEHSKINLETKNIFIEITANDKTKAEIV---LNQMVAMFSRYCDEpfTVEPVEIVSEHNGE 285
Cdd:COG3382 165 CRRWPWRDSERTKVTEETKNALFIIEGLPGVSAEDLeaaLDELAELLERYLGG--EVVKTRILDADNPE 231
|
|
| |
