|
Name |
Accession |
Description |
Interval |
E-value |
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
3-537 |
8.99e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 76.60 E-value: 8.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 3 ELEELDKQNQEATKHVILIKEQLSKQQSEGDSV---IKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLS 79
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLnnkYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLS 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 80 DLQLTKQK---LEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDD----LLR 152
Cdd:TIGR04523 205 NLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEqnnkKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 153 EKETEVQSLKQNLSEIEQ---------LNEHLKQVAFDLRI------ENEKLVVACEDVRNQLEESVAGNNQISLEKAAI 217
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNqkeqdwnkeLKSELKNQEKKLEEiqnqisQNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 218 LEWEKAQLEaepcraekRLLEEGRKYRQTVQGPSSthspDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTK 297
Cdd:TIGR04523 365 LEEKQNEIE--------KLKKENQSYKQEIKNLES----QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 298 ETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALRKNET----LRQTIEEKDRSLGSMKEENNHLQEEL 373
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqKQKELKSKEKELKKLNEEKKELEEKV 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 374 ERLREQQSravpvpepRTLDSTTELESELSQLHTIKDHLEEEIKHhqkmiEDQNQNKMQLLQSLQEQKKAMDEFKyqHEQ 453
Cdd:TIGR04523 513 KDLTKKIS--------SLKEKIEKLESEKKEKESKISDLEDELNK-----DDFELKKENLEKEIDEKNKEIEELK--QTQ 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 454 MSITHSRlfLEKDEEIKNLQKTIEQIKAQLqEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERE 533
Cdd:TIGR04523 578 KSLKKKQ--EEKQELIDQKEKEKKDLIKEI-EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
....
gi 1958783323 534 LEIK 537
Cdd:TIGR04523 655 KEIR 658
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
321-1256 |
3.84e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 3.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 321 IVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAvpvpeprTLDSTTELES 400
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL-------LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 401 ELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEK---DEEIKNLQKTIE 477
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKqilRERLANLERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 478 QIKAQLQEERQDSQTensdifQETKVQSLNIEIGSekhdlSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLsKDE 557
Cdd:TIGR02168 320 ELEAQLEELESKLDE------LAEELAELEEKLEE-----LKEELESLEAELEELEAELEELESRLEELEEQLETL-RSK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 558 VGKLTQIIQQKDVEIQALHARISSASYSQDvvylQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAAL 637
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRE----RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 638 IKLQDEnkkmstrfessgqdmfketIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEVGGVNSNQFEELLQERDK 717
Cdd:TIGR02168 464 EELREE-------------------LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 718 LKQQVKKMEEWKQQVMTTVQ-NMQH---ESAQLQEELHQLQAQVS--------VDSDNNTKLQVNYTGLIQSYEQNETKL 785
Cdd:TIGR02168 525 LSELISVDEGYEAAIEAALGgRLQAvvvENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVA 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 786 KNFGQELAQVQHSI----GQLCTTKDLLLGklDSMSPQLSPGSSLTTQAAEPLKAsqcsgphesSHLLQQEVDDLRKSLQ 861
Cdd:TIGR02168 605 KDLVKFDPKLRKALsyllGGVLVVDDLDNA--LELAKKLRPGYRIVTLDGDLVRP---------GGVITGGSAKTNSSIL 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 862 EKDATIRTLQENNHRLsdsmaassegERKEHEQTDsEVKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENFANKVSEN 941
Cdd:TIGR02168 674 ERRREIEELEEKIEEL----------EEKIAELEK-ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 942 ELLRQAVTNLKERILILEMDISKLKGENEKVIEASKGKETEYQALQEtnmkfsmmlrekefechsmrekalafeqllkek 1021
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA--------------------------------- 789
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1022 eqgkagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTR 1101
Cdd:TIGR02168 790 ------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1102 EALAAEDREAKLrkkvsvleEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQ 1181
Cdd:TIGR02168 864 LEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 1182 MVLEHFQQEEKAMYSAELEKQNQLLTEWKKKAESLEGKVLSLQERLDEAN----AALDSASRLTEQLDLKEEQIEELKK 1256
Cdd:TIGR02168 936 VRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvnlAAIEEYEELKERYDFLTAQKEDLTE 1014
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-506 |
4.93e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 4.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMniikELNVQKEKLTHSEQVLSDL 81
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINELEEEKEDK 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEVQSL 161
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEHLKQVAFDLRIENekLVVACEDVRNQ----LEESVAG---------------NNQISLEKAAIL---- 218
Cdd:TIGR02169 527 VAQLGSVGERYATAIEVAAGNRLNN--VVVEDDAVAKEaielLKRRKAGratflplnkmrderrDLSILSEDGVIGfavd 604
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 219 ------EWEKA-------QLEAEPCRAEKRLLEEGR-----------------KYRQTVQGPSSTHSPDASALQLeQERL 268
Cdd:TIGR02169 605 lvefdpKYEPAfkyvfgdTLVVEDIEAARRLMGKYRmvtlegelfeksgamtgGSRAPRGGILFSRSEPAELQRL-RERL 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 269 IQLNQEKDFEIAELKkSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEiciVKLKEKSSELQRELDRCSQAL----RK 344
Cdd:TIGR02169 684 EGLKRELSSLQSELR-RIENRLDELSQELSDASRKIGEIEKEIEQLEQEE---EKLKERLEELEEDLSSLEQEIenvkSE 759
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 345 NETLRQTIEEKDRSLGSMKEENNHLQEELERLR----EQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEEEIKHHQ 420
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRipeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 421 KMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQmsitHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQE 500
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEE----LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
....*.
gi 1958783323 501 TKVQSL 506
Cdd:TIGR02169 916 RKRLSE 921
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
259-967 |
8.87e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 8.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 259 SALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRC 338
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 339 SQALRKNEtlrQTIEEKDRSLGSMKEENNHLQEELERLREQQSRA---VPVPEPRTLDSTTELE---SELSQLHTIKDHL 412
Cdd:TIGR02168 322 EAQLEELE---SKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLEELEEQLEtlrSKVAQLELQIASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 413 EEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSIThsrlflEKDEEIKNLQKTIEQIKAQLQEERQDSQT 492
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE------ELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 493 ENSDIFQ-ETKVQSLNIEIGSEKHDLSKAETE-------------------RLVKGIK-----ERELEI-------KLLN 540
Cdd:TIGR02168 473 AEQALDAaERELAQLQARLDSLERLQENLEGFsegvkallknqsglsgilgVLSELISvdegyEAAIEAalggrlqAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 541 EKNISLTKQIDQLSKDEVGKLTQII--QQKDVEIQALHAriSSASYSQDVVYLQQQVQAYAMEREKVM------VVLSEK 612
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPldSIKGTEIQGNDR--EILKNIEGFLGVAKDLVKFDPKLRKALsyllggVLVVDD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 613 TRENSKLKSEYHkmidilsaKEAALIKLQDEnkKMSTRFESSGQDMFKET-IQNLSRIIREKDIEIDALSQKCQTLLTVL 691
Cdd:TIGR02168 631 LDNALELAKKLR--------PGYRIVTLDGD--LVRPGGVITGGSAKTNSsILERRREIEELEEKIEELEEKIAELEKAL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 692 QtsgtgsevggvnsnqfeELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNTKLQVNY 771
Cdd:TIGR02168 701 A-----------------ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 772 TGLIQSYEQNETKLKNFGQELAQVQHSIGQLCTTKDLLLGKLDSMSPQLSPGSSLTTQAAEPLKAsqcsgphesshlLQQ 851
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES------------LER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 852 EVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDLLikakSDQLHSSN 931
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL----SEELRELE 907
|
730 740 750
....*....|....*....|....*....|....*.
gi 1958783323 932 ENFANKVSENELLRQAVTNLKERILILEMDISKLKG 967
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
591-1281 |
6.91e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 6.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 591 LQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDENKKMSTRFEssgqdMFKETIQNLSRII 670
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ-----ILRERLANLERQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 671 REKDIEIDALSQKCQTLLTVLQTSGTGSEVGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNmqhESAQLQEEL 750
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS---KVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 751 HQLQAQVSVDSDNNTKLQVNYTGLIQSYEQNETKLKNfgQELAQVQHSIGQLCTTKDLLLGKLDSMSPQLSPGSSLTTQA 830
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 831 AEPLKASQcsgphESSHLLQQEVDDLRKSLQEKD---ATIRTLQENNHRLSDSMAASSE----------------GERKE 891
Cdd:TIGR02168 474 EQALDAAE-----RELAQLQARLDSLERLQENLEgfsEGVKALLKNQSGLSGILGVLSElisvdegyeaaieaalGGRLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 892 HEQTDSEvkqlkEKQEVLQNLLKEKDL-------LIKAKSDQLHSSNENFANK-----------VSENELLRQAVTNLKE 953
Cdd:TIGR02168 549 AVVVENL-----NAAKKAIAFLKQNELgrvtflpLDSIKGTEIQGNDREILKNiegflgvakdlVKFDPKLRKALSYLLG 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 954 RILILE-----MDISKLKGENEKVI----EASKGKETEYQALQETNMkfSMMLREKEFEchSMREKALAFEQLLKEKEQg 1024
Cdd:TIGR02168 624 GVLVVDdldnaLELAKKLRPGYRIVtldgDLVRPGGVITGGSAKTNS--SILERRREIE--ELEEKIEELEEKIAELEK- 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1025 kagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESED---SHTR 1101
Cdd:TIGR02168 699 ---ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEErleEAEE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1102 EALAAEDREAKLRKKVSVLEEKLVSSSNAMENAS----------HQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVK 1171
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRaeltllneeaANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1172 QYAMSLTNLQMVLEHFQQEEKAMySAELEKQNQLLTEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQI 1251
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
730 740 750
....*....|....*....|....*....|....*
gi 1958783323 1252 E----ELKKQ-NELHQEMLDDAQKKLMSLVNSTEG 1281
Cdd:TIGR02168 935 EvridNLQERlSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-539 |
7.70e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 7.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQLSKQQSEgdsvIKRLKEELDDEKKRTHQLEddkmniiKELNVQKEKLTHSEQVLSDL 81
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELE----LEEAQAEEYELLAELARLE-------QDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQgsnsnlkddlLREKETEVQSL 161
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----------LEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEwEKAQLEAEPCRAEKRLLEEGR 241
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE-EEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 242 KYRQTVQGPSSTHSPDASALQLEQERL-IQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEIC 320
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLeAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 321 IV-----KLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSR-----AVPVPEPR 390
Cdd:COG1196 551 IVveddeVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVlgdtlLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 391 TLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIK 470
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 471 NLQKTIEQIKAQLQEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERELEIKLL 539
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
150-819 |
9.64e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.60 E-value: 9.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 150 LLREKETEVQSLKQNLSEIEQLNE----HLKQVAFDLRIENEKLVV--------------ACEDVRNQLEESVAGNNQIS 211
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQMerdamadirrresqSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 212 LEKAAILEWEKAQLEA--EPCRAEKRLLEEGRKYRQTVQGPSSTHSPDASALQLEQER-----LIQLNQEKDFEIAELKK 284
Cdd:pfam15921 159 CLKEDMLEDSNTQIEQlrKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRslgsaISKILRELDTEISYLKG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 285 SI----EQMDTDHKQTKETLSSSLEE-QKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALrknetlrQTIEEKDRSL 359
Cdd:pfam15921 239 RIfpveDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL-------EIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 360 GSM-KEENNHLQEELERLREQQSRAVPVPEPRTLDSTTEL---ESELSQLHTIKDHLEEEI----KHHQKMIEDQNQNKM 431
Cdd:pfam15921 312 NSMyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlaNSELTEARTERDQFSQESgnldDQLQKLLADLHKREK 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 432 QLLQSLQEQKKAMDefKYQHEQMSITHSRLFL-EKDEEIKNLQKTIEQIKA--QLQEERQDSQTENSDIFQEtKVQSLNI 508
Cdd:pfam15921 392 ELSLEKEQNKRLWD--RDTGNSITIDHLRRELdDRNMEVQRLEALLKAMKSecQGQMERQMAAIQGKNESLE-KVSSLTA 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 509 EIGSEKHDLSKAETERLVKGIKERELEiKLLNEKNISLTKQiDQLSKDEVGKLTQIIQQKDVEIQALHARISSASYSQDV 588
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSE-RTVSDLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 589 VYLQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIK--------------LQDENKKMSTRFESS 654
Cdd:pfam15921 547 QTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindrrlelqefkiLKDKKDAKIRELEAR 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 655 GQDMFKETIQNLS------RIIREKDIEIDALSQKCQTLLTVLQTSGTGSEVGGVN-SNQFEELLQERDKLKQQVKKMEE 727
Cdd:pfam15921 627 VSDLELEKVKLVNagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNfRNKSEEMETTTNKLKMQLKSAQS 706
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 728 WKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNTKLQvNYTGLIQSYEQNETKLKNF-GQELAQVQHSIGQLCTTK 806
Cdd:pfam15921 707 ELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQ-SKIQFLEEAMTNANKEKHFlKEEKNKLSQELSTVATEK 785
|
730
....*....|...
gi 1958783323 807 DLLLGKLDSMSPQ 819
Cdd:pfam15921 786 NKMAGELEVLRSQ 798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
62-354 |
1.62e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 62 KELNVQKEKLTHSEQVLSD--LQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQT 139
Cdd:COG1196 216 RELKEELKELEAELLLLKLreLEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 140 QGSNSNLKDDLLREKETEVQS-LKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAIL 218
Cdd:COG1196 296 ELARLEQDIARLEERRRELEErLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 219 EWEKAQLEAEpcRAEKRLLEEGRKYRQTVQgpssthspdasALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKE 298
Cdd:COG1196 376 EAEEELEELA--EELLEALRAAAELAAQLE-----------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958783323 299 TLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALRKNETLRQTIEE 354
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
982-1270 |
3.66e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 982 EYQALQEtnmkfSMMLREKEFECHSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1061
Cdd:COG1196 214 RYRELKE-----ELKELEAELLLLKLRELEAELEELEAELEELEA-ELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1062 -------METSTLQNEVQRLRDKEARLNQELQRL---RDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAM 1131
Cdd:COG1196 288 aeeyellAELARLEQDIARLEERRRELEERLEELeeeLAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1132 ENASHQASVQVESLQEQLnmvsKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAMYSAELEKQNQLLTEwKK 1211
Cdd:COG1196 368 LEAEAELAEAEEELEELA----EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE-EE 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 1212 KAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDAQK 1270
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
91-485 |
5.40e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 5.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 91 KVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREK-ETEVQSLKQNLSEIE 169
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEvEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 170 QLNEHLKQVAFDLRIENEKLVvACEDVRNQLEESVAG-NNQISLEKAAILEwekaqleaepcrAEKRLLEEGRKYRQTVQ 248
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELA-EAEAEIEELEAQIEQlKEELKALREALDE------------LRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 249 GPSStHSPDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEkeicivkLKEKS 328
Cdd:TIGR02168 825 RLES-LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL-------LRSEL 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 329 SELQRELDRCSQALRKnetLRQTIEEKDRSLGSMKEE----NNHLQEELERLREQQSRAVPVPEPRTLDSTTELESelsq 404
Cdd:TIGR02168 897 EELSEELRELESKRSE---LRRELEELREKLAQLELRleglEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE---- 969
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 405 lhtikdhLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEqmSITHSRLFLEK-----DEEIKN-LQKTIEQ 478
Cdd:TIGR02168 970 -------ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE--DLTEAKETLEEaieeiDREARErFKDTFDQ 1040
|
....*..
gi 1958783323 479 IKAQLQE 485
Cdd:TIGR02168 1041 VNENFQR 1047
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
330-1086 |
6.86e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 6.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 330 ELQRELDRCSQALRKNE-TLRQTIEEKDRSLGSMKEENNHLQEEleRLREQQSRAvpvpeprtlDSTTELESELSQLHTI 408
Cdd:pfam15921 89 DLQRRLNESNELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADI--RRRESQSQE---------DLRNQLQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 409 KDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFK-------YQHEQMSITH--------SRLFLEKDEEIKNLQ 473
Cdd:pfam15921 158 KCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEeasgkkiYEHDSMSTMHfrslgsaiSKILRELDTEISYLK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 474 KTIEQIKAQLQEERQDSQTEnsdifqetkvqslnIEIGSEKHDlskaetERLVKGIKERELEIKLLNEKNISLTKQ---- 549
Cdd:pfam15921 238 GRIFPVEDQLEALKSESQNK--------------IELLLQQHQ------DRIEQLISEHEVEITGLTEKASSARSQansi 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 550 ------IDQLSKDEVGKLTQIIQQKDVEIQALHARISSA--SYSQDVVYLQQQVQAYAMEREKVMVVLSEKTRENSKLKS 621
Cdd:pfam15921 298 qsqleiIQEQARNQNSMYMRQLSDLESTVSQLRSELREAkrMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 622 EYHKMIDILSAKEAALIKLQDENKKMSTRfeSSGQDMfkeTIQNLSRIIREKDIEIdalsQKCQTLLTVLQTSGTG---- 697
Cdd:pfam15921 378 QLQKLLADLHKREKELSLEKEQNKRLWDR--DTGNSI---TIDHLRRELDDRNMEV----QRLEALLKAMKSECQGqmer 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 698 --SEVGGVNSN--QFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNTKLQVNYTG 773
Cdd:pfam15921 449 qmAAIQGKNESleKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDL 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 774 LIQSYEQnetkLKNFGQELAQVQHSIGQL---CTTKDLLlgkLDSMSPQLSPGSSLTTQAAEPLKASQCSGPHesshlLQ 850
Cdd:pfam15921 529 KLQELQH----LKNEGDHLRNVQTECEALklqMAEKDKV---IEILRQQIENMTQLVGQHGRTAGAMQVEKAQ-----LE 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 851 QEVDDLRKSLQE-------KDATIRTLQEnnhRLSDsmaasSEGERKEHEQTDSE----VKQLKEKQEVLQNLLKEKDLL 919
Cdd:pfam15921 597 KEINDRRLELQEfkilkdkKDAKIRELEA---RVSD-----LELEKVKLVNAGSErlraVKDIKQERDQLLNEVKTSRNE 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 920 IKAKSDQLHSSNENFANKVSENEL----LRQAVTNLKERILILEMDISKLKGENEKVIEASKG-------KETEYQALQE 988
Cdd:pfam15921 669 LNSLSEDYEVLKRNFRNKSEEMETttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGmqkqitaKRGQIDALQS 748
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 989 TNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGK---AGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETS 1065
Cdd:pfam15921 749 KIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKnkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQ 828
|
810 820
....*....|....*....|.
gi 1958783323 1066 TLQNEVQRLRDKEARLNQELQ 1086
Cdd:pfam15921 829 RQEQESVRLKLQHTLDVKELQ 849
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
148-446 |
7.85e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 7.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 148 DDLLREKETEVQSLK---------QNLSEIEQLNEHLKQVAFDLRIENEKlvvacEDVRNQLEESVAGNNQISLEKAAI- 217
Cdd:COG1196 192 EDILGELERQLEPLErqaekaeryRELKEELKELEAELLLLKLRELEAEL-----EELEAELEELEAELEELEAELAELe 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 218 LEWEKAQLEAEpcRAEKRLLEEGRKYRQTVQGPSSThspdASALQLEQERLIQLNQekdfEIAELKKSIEQMDTDHKQTK 297
Cdd:COG1196 267 AELEELRLELE--ELELELEEAQAEEYELLAELARL----EQDIARLEERRRELEE----RLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 298 ETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDrcsQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLR 377
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA---EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 378 EQQSRAvpvpeprtLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDE 446
Cdd:COG1196 414 ERLERL--------EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2-379 |
1.22e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.67 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVilikEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDL 81
Cdd:PRK02224 314 ARREELEDRDEELRDRL----EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQT-----------QGSNSNLKDDL 150
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgQPVEGSPHVET 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 151 LREKETEVQSLKQNLSEIEqlnehLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPC 230
Cdd:PRK02224 470 IEEDRERVEELEAELEDLE-----EEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 231 RAEKrLLEEGRKYRQTVQgpssthsPDASALQLEQERLIQLNQEKdfeiAELKKSIEQMDT------DHKQTKETLSSSL 304
Cdd:PRK02224 545 RAAE-LEAEAEEKREAAA-------EAEEEAEEAREEVAELNSKL----AELKERIESLERirtllaAIADAEDEIERLR 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 305 EEQKQLAQLINEKEICIVKLKEKSSELQRELD--RCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQ----------EE 372
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRERKRELEAEFDeaRIEEAREDKERAEEYLEQVEEKLDELREERDDLQaeigavenelEE 692
|
....*..
gi 1958783323 373 LERLREQ 379
Cdd:PRK02224 693 LEELRER 699
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-490 |
2.82e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 2.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 107 FDIQKEN-RELREHIRQNEEELSTVRSELTQSQTQgsnsnLKDDllREKETEVQSLKQNLSEIEQlNEHLKQVAfdlriE 185
Cdd:TIGR02169 168 FDRKKEKaLEELEEVEENIERLDLIIDEKRQQLER-----LRRE--REKAERYQALLKEKREYEG-YELLKEKE-----A 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 186 NEKLVVACEDVRNQLEESVAGnnqislekaaiLEWEKAQLEAEPCRAEKRLLEEGRKYRQTVQGPSSTHSPDASALQLEQ 265
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEK-----------LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 266 ERLiqlnqekDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELdrcsqalrkn 345
Cdd:TIGR02169 304 ASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL---------- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 346 ETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSrAVPVPEPRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIED 425
Cdd:TIGR02169 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958783323 426 QNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLflekDEEIKNLQKTIEQIKAQLQEERQDS 490
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV----EKELSKLQRELAEAEAQARASEERV 506
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
537-1260 |
3.02e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.59 E-value: 3.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 537 KLLNEKNISLTKQIDQLsKDEVGKLTQIIQQKDVEIQALHARISSASYSQDvvYLQQQVQAYAMEREKVMVVLSEKTREN 616
Cdd:pfam15921 92 RRLNESNELHEKQKFYL-RQSVIDLQTKLQEMQMERDAMADIRRRESQSQE--DLRNQLQNTVHELEAAKCLKEDMLEDS 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 617 SKLKSEYHKMI----DILSAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQ 692
Cdd:pfam15921 169 NTQIEQLRKMMlsheGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLE 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 693 TSGTGSEvggvnsNQFEELLQE-RDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVD--------SDN 763
Cdd:pfam15921 249 ALKSESQ------NKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymrqlSDL 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 764 NTKLQVNYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCTTKDLLLGKLDSMSPQLSP----------GSSLTTQAAEP 833
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKlladlhkrekELSLEKEQNKR 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 834 LKASQCSGPHESSHLlQQEVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNLL 913
Cdd:pfam15921 403 LWDRDTGNSITIDHL-RRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 914 KE---KDLLIKAKSDQLHSSNENFANKVSENELLRQAVTNLKERILILEMDISKLKGENE------------KVIEASKG 978
Cdd:pfam15921 482 EEltaKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhlrnvqtecealKLQMAEKD 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 979 KETEYQALQETNM---------KFSMMLREKEFECHSMREKALAFEQL--LKEKEQGKAGELNQLLNAVKSMQEKTVTFQ 1047
Cdd:pfam15921 562 KVIEILRQQIENMtqlvgqhgrTAGAMQVEKAQLEKEINDRRLELQEFkiLKDKKDAKIRELEARVSDLELEKVKLVNAG 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1048 QERdqvMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDHLlesedSHTREALAAEDREAKLRKKVSVLE-EKLVS 1126
Cdd:pfam15921 642 SER---LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF-----RNKSEEMETTTNKLKMQLKSAQSElEQTRN 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1127 SSNAMENASHQASVQVESLQEQLNMVSKQRDetALQlsvSQEQVKQYAMSLTNLQmvlEHFQQEEKAMYSAELEKQNQLL 1206
Cdd:pfam15921 714 TLKSMEGSDGHAMKVAMGMQKQITAKRGQID--ALQ---SKIQFLEEAMTNANKE---KHFLKEEKNKLSQELSTVATEK 785
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958783323 1207 TEWKKKAESLEGKVLSLQERLDEANAALDSAS-RLTEQLDLKEEQIEE---LKKQNEL 1260
Cdd:pfam15921 786 NKMAGELEVLRSQERRLKEKVANMEVALDKASlQFAECQDIIQRQEQEsvrLKLQHTL 843
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1055-1275 |
3.73e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1055 LALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEkLVSSSNAMENA 1134
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-LEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1135 SHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAMYSAELEKQNQLLTEWKKKAE 1214
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958783323 1215 SLegkvlslQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1275
Cdd:COG1196 391 AL-------RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2-485 |
4.39e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQ---EATKHVILIKEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVL 78
Cdd:PRK03918 189 ENIEELIKEKEkelEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 79 SDLQLTKQKLEGKVEDLvDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEV 158
Cdd:PRK03918 269 EELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 159 QSLKQNLSEIE---QLNEHLKQVAFDL-RIENEKLVVACEDVRNQLEESVAGNNQISLE------------------KAA 216
Cdd:PRK03918 348 KELEKRLEELEerhELYEEAKAKKEELeRLKKRLTGLTPEKLEKELEELEKAKEEIEEEiskitarigelkkeikelKKA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 217 ILEWEKAQLEAEPCRAEkrLLEEGRK-----YRQTVQGPSSTHSPDASALQLEQERLIQLNQE--KDFEIAELKKSIEQM 289
Cdd:PRK03918 428 IEELKKAKGKCPVCGRE--LTEEHRKelleeYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELAEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 290 DTDHKQTKETLSSSLEEQKQLAQLINEKEIcivKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEE---- 365
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLI---KLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEleel 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 366 ----NNHLQEELERLREQQSRAVpvpepRTLDSTTELESELSQLhtikDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQK 441
Cdd:PRK03918 583 gfesVEELEERLKELEPFYNEYL-----ELKDAEKELEREEKEL----KKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1958783323 442 KAMDEFKYQHEqmsithSRLFLEKDEEIKNLQKTIEQIKAQLQE 485
Cdd:PRK03918 654 KKYSEEEYEEL------REEYLELSRELAGLRAELEELEKRREE 691
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-479 |
5.94e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 5.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQLSKQQSEgdsvIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDL 81
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEA----LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEVQSL 161
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEH-LKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRAEKRLLEEG 240
Cdd:COG1196 493 LLLLLEAEADYEGfLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 241 RKYRQTVQGPSSTHSPDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEIC 320
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 321 IVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRavpvpepRTLDSTTELES 400
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE-------ERLEEELEEEA 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 401 ELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKK------------------AMDEFKYQHEQMSithsrlF 462
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERelerlereiealgpvnllAIEEYEELEERYD------F 799
|
490 500
....*....|....*....|..
gi 1958783323 463 LEK-----DEEIKNLQKTIEQI 479
Cdd:COG1196 800 LSEqredlEEARETLEEAIEEI 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
22-757 |
7.29e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 7.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 22 KEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQLTKQKLEGKVEDLVDQLSK 101
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 102 SEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQgsnSNLKDDLLREKETEVQSLKQNLSEIEQLNEHLKQVAFD 181
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE---LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 182 LRIENEKLvvacedvRNQLEESVAGNNQISlEKAAILEWEKAQLEAEPCRAEKRL----LEEGRKYRQTVQGPSSTHSPD 257
Cdd:TIGR02168 391 LELQIASL-------NNEIERLEARLERLE-DRRERLQQEIEELLKKLEEAELKElqaeLEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 258 ASALQLEQERLIQLNQEKDFEIAELK---KSIEQMDTDHKQTKETLSSSLEEQKQLAQLINekeiCIVKLKEKSSELQRE 334
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGVKALLKNQSGLSGILG----VLSELISVDEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 335 LD-------------------RCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEE--------LERLREQQSRAVPVP 387
Cdd:TIGR02168 539 IEaalggrlqavvvenlnaakKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKniegflgvAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 388 EPR--------TLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHS 459
Cdd:TIGR02168 619 SYLlggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 460 RLfLEKDEEIKNLQKTIEQIKAQLQEERQD-SQTENSDIFQETKVQSLNIEIGSEKHDLSKAETER--LVKGIKERELEI 536
Cdd:TIGR02168 699 AL-AELRKELEELEEELEQLRKELEELSRQiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIeeLEERLEEAEEEL 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 537 KLLNEKNISLTKQIDQLsKDEVGKLTQIIQQKDVEIQALHARIssasysQDVVYLQQQVQAYAMEREKVMVVLSEKTREN 616
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQL-KEELKALREALDELRAELTLLNEEA------ANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 617 SKLKSEYHKMIdilSAKEAALIKLQDENKKMSTRFESSGQDM--FKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTS 694
Cdd:TIGR02168 851 SEDIESLAAEI---EELEELIEELESELEALLNERASLEEALalLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958783323 695 gtgsevggvnSNQFEELLQERDKLKQQVkkMEEWK---QQVMTTVQNMQHESAQLQEELHQLQAQV 757
Cdd:TIGR02168 928 ----------ELRLEGLEVRIDNLQERL--SEEYSltlEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3-573 |
1.12e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 3 ELEELDKQNQEATKHVILIKEQLSKQQSEGdsviKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQ 82
Cdd:PTZ00121 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEA----KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 83 LTKQKLEGKVEDL--VDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEVQS 160
Cdd:PTZ00121 1289 KKKADEAKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 161 LKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVR--NQLEESVAGNNQISLEKAAILEWEKAQlEAEPCRAEKRLLE 238
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKkaDELKKAAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKAD 1447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 239 EGRKYRQTVQGPSSTHSPDASALQLEQerlIQLNQEKDFEIAELKKSIEQMD--TDHKQTKETLSSSLEEQKQLAQLINE 316
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEAKKKAEEAKKADE---AKKKAEEAKKADEAKKKAEEAKkkADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 317 KEICIVKLKEKSSELQR-ELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPVPEPRTLDST 395
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKaEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 396 TELESElsqlhTIKDHLEEEIKHHQ-KMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEiknlQK 474
Cdd:PTZ00121 1605 KKMKAE-----EAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED----KK 1675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 475 TIEQIKAQLQEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLS 554
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
570
....*....|....*....
gi 1958783323 555 KDEVGKLTQIIQQKDVEIQ 573
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIR 1774
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1047-1282 |
3.24e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1047 QQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRdhllesedshtREALAAEDREAKLRKKVSVLEEKLVS 1126
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----------RRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1127 SSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAMYS--AELEKQNQ 1204
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAdlAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 1205 LLTEWKKKAESLEGKVLSLQERLDEANAALDSA-SRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1282
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLlARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
257-579 |
3.26e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 3.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 257 DASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELD 336
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 337 RcsqALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAvpvpeprtldsTTELESELSQLHTIKDHLEEEI 416
Cdd:COG1196 306 R---LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA-----------EEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 417 KHHQKMIEDQNQNKMQLLQSLQEQKkamdEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSD 496
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAA----ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 497 IFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQQKDVEIQALH 576
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
...
gi 1958783323 577 ARI 579
Cdd:COG1196 528 VLI 530
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
853-1275 |
3.72e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 3.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 853 VDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNL--LKEKDLLIKAKSDQLHSS 930
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELpeLREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 931 NENFANKVSENELLRQAVTNLKERILILEMDISKLKG------ENEKVIEASKGKETEYQALQETNMKFSMMLREKEFEC 1004
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKeieeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1005 HSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQqERDQVMLALKQKQMETSTLQNEVQRLR-DKEARLNQ 1083
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEE-RLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1084 ELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEE-KLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQ 1162
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1163 LSVSQEQVKQYAMSLTNLQMV---------LEHFQQEEKAMYSAELEKQNQLLTEWKKKAESLEGKVLSLQERLDEANAA 1233
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELiklkelaeqLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1958783323 1234 LDSASRLTEQLDLKEEQIEELKKQ-NELHQEMLDDAQKKLMSL 1275
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKElEELGFESVEELEERLKEL 597
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-540 |
4.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 4.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQLSKQQSEgdsvIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDL 81
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSK----VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLtkQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQtqgSNSNLKDDLLREKETEVQSL 161
Cdd:TIGR02168 434 EL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ---ARLDSLERLQENLEGFSEGV 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEHLKQVAFDLRIENE--------------KLVVACEDVRNQ---------------LEESVAGNNQISL 212
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELISVDEGyeaaieaalggrlqAVVVENLNAAKKaiaflkqnelgrvtfLPLDSIKGTEIQG 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 213 EKAAILEWEK------AQLEAEPCRAEKRL----------------LEEGRKYRQ------------TVQGPSSTHSPDA 258
Cdd:TIGR02168 589 NDREILKNIEgflgvaKDLVKFDPKLRKALsyllggvlvvddldnaLELAKKLRPgyrivtldgdlvRPGGVITGGSAKT 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 259 SALQLEQERLIQLNQEKdfeIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRC 338
Cdd:TIGR02168 669 NSSILERRREIEELEEK---IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 339 SQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVpvpeprtldstTELESELSQLHTIKDHLEEEIKH 418
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI-----------EQLKEELKALREALDELRAELTL 814
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 419 HQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRL---FLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENS 495
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaaeIEELEELIEELESELEALLNERASLEEALALLRS 894
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1958783323 496 DIFQ-ETKVQSLNIEIGSEKHDLSKAETERLVKGIKERELEIKLLN 540
Cdd:TIGR02168 895 ELEElSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
25-485 |
6.34e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 6.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 25 LSKQQSEGDSVIKRLKEELDDEKKRTHQLEDdkmnIIKELNVQKEKLTHSEQVLSDLQLTKQKLEGKVEDLVDQLSKSEK 104
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADE----VLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 105 NNFDIQKENRELREHIRQNEEELSTVrsELTQSQTQGSNSNLKDDL------LREKETEVQSLKQNLSEIEQLNEHLKQV 178
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAV--EARREELEDRDEELRDRLeecrvaAQAHNEEAESLREDADDLEERAEELREE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 179 AFDLRIENEKLVVACEDVRNQLEE--------------------SVAGNNQISLEKAAILEWEKAQLEAEPCRAEKR--- 235
Cdd:PRK02224 365 AAELESELEEAREAVEDRREEIEEleeeieelrerfgdapvdlgNAEDFLEELREERDELREREAELEATLRTARERvee 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 236 ---LLEEGR--KYRQTVQGpssthSPDASALQLEQERLIQLNQEKD---FEIAELKKSIEQMdTDHKQTKETLSSSLEEQ 307
Cdd:PRK02224 445 aeaLLEAGKcpECGQPVEG-----SPHVETIEEDRERVEELEAELEdleEEVEEVEERLERA-EDLVEAEDRIERLEERR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 308 KQLAQLINEKEICIVKLKEKSSELQR---ELDRCSQALRKN-ETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRa 383
Cdd:PRK02224 519 EDLEELIAERRETIEEKRERAEELREraaELEAEAEEKREAaAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL- 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 384 vpvpeprtLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQkkAMDEFKYQHEQMSITHSRL-- 461
Cdd:PRK02224 598 --------LAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA--RIEEAREDKERAEEYLEQVee 667
|
490 500
....*....|....*....|....*
gi 1958783323 462 -FLEKDEEIKNLQKTIEQIKAQLQE 485
Cdd:PRK02224 668 kLDELREERDDLQAEIGAVENELEE 692
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
841-1272 |
1.23e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 841 GPHESSHLLQQEVDDLRKSLQ----EKDATIRTLQENNHRLSdsmaassegerkEHEQTDSEVKQLKEKQEVLQnllkek 916
Cdd:PRK02224 203 DLHERLNGLESELAELDEEIEryeeQREQARETRDEADEVLE------------EHEERREELETLEAEIEDLR------ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 917 dllikaksdqlhssnENFANKVSENELLRQAVTNLKERILILEMDISKLKGE-------NEKVIEASKGKETEYQALQET 989
Cdd:PRK02224 265 ---------------ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 990 NMKFSMMLREKEFECHSMREKALAFEQLLKEKEQgKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETST--- 1066
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELRE-EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdlg 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1067 --------LQNEVQRLRDKEARLNQELQRLRDHLLESED-----------------SHTREALAAEDREAKLRKKVSVLE 1121
Cdd:PRK02224 409 naedfleeLREERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvegsPHVETIEEDRERVEELEAELEDLE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1122 EKLVSSSNAMENASH--QASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQyamsltnlqmvlehfQQEEKAMYSAEL 1199
Cdd:PRK02224 489 EEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRERAEE---------------LRERAAELEAEA 553
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958783323 1200 EKQNQLLTEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDL---KEEQIEELKKQNELHQEMLDDAQKKL 1272
Cdd:PRK02224 554 EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAiadAEDEIERLREKREALAELNDERRERL 629
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
30-910 |
1.40e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 30 SEGDSVIKRLKEELDDEKKRTHQLEddkmNIIKELNVQKEKL-THSEQVLS--DLQLTKQKLEGKVedLVDQLSKSEKNN 106
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLD----LIIDEKRQQLERLrREREKAERyqALLKEKREYEGYE--LLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 107 FDIQKENRELREHIRQNEEELSTVRSELTQsqtqgsnsnlKDDLLREKETEVQSLKQNlsEIEQLNEHLKqvafDLRIEN 186
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEE----------IEQLLEELNKKIKDLGEE--EQLRVKEKIG----ELEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 187 EKLVVACEDVRNQLEESVAGNNQISLEKAAILEwEKAQLEAEpcraekrlLEEGRKYRQTVQGPSSTHSPDASALQLEQE 266
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLA-EIEELERE--------IEEERKRRDKLTEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 267 RLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALRKNE 346
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 347 TLRQTIEEK----DRSLGSMKEENNHLQEELERLR------EQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEEEI 416
Cdd:TIGR02169 455 WKLEQLAADlskyEQELYDLKEEYDRVEKELSKLQrelaeaEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 417 KHHQKMIEDQNQNKM---------------QLLQS----------LQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKN 471
Cdd:TIGR02169 535 ERYATAIEVAAGNRLnnvvveddavakeaiELLKRrkagratflpLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEP 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 472 LQKTIeqIKAQLQEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERElEIKLLNEKNISLTKQID 551
Cdd:TIGR02169 615 AFKYV--FGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPA-ELQRLRERLEGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 552 QLsKDEVGKLTQIIQQKDVEIQALHARISSASysQDVVYLQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILS 631
Cdd:TIGR02169 692 SL-QSELRRIENRLDELSQELSDASRKIGEIE--KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 632 AKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLqtsgtgsevggvnsnqfEEL 711
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-----------------EYL 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 712 LQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNTKLQVNYTGLIQSYEQNETKLKNFGQE 791
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 792 LAQVQHSIGQLCTTKDLLLGKLDSMspqlspgsslttqaaEPLKASQCSGPHESSHLlqqevDDLRKSLQEKDATIRTLQ 871
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELSEI---------------EDPKGEDEEIPEEELSL-----EDVQAELQRVEEEIRALE 971
|
890 900 910
....*....|....*....|....*....|....*....
gi 1958783323 872 ENNHRLSDsmaassegerkEHEQTDSEVKQLKEKQEVLQ 910
Cdd:TIGR02169 972 PVNMLAIQ-----------EYEEVLKRLDELKEKRAKLE 999
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2-376 |
1.72e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQLSKQQSegdsvIKRLKEELDDEKKRTHQLEDDKmnIIKELNVQKEKLTHSEQVLSDL 81
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEERHELYEE-----AKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKI 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQN-----EEELSTVRSELTQSQTQGS---NSNLKDDLLRE 153
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKElleeyTAELKRIEKELKEIEEKERklrKELRELEKVLK 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 154 KETEVQSLKQNLSEIEQLNEHLKQvafdlrIENEKLVVACEDVRNQLEESVAGNNQIS-----LEKAAILEWEKAQLEAE 228
Cdd:PRK03918 491 KESELIKLKELAEQLKELEEKLKK------YNLEELEKKAEEYEKLKEKLIKLKGEIKslkkeLEKLEELKKKLAELEKK 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 229 PCRAEKRLLEEGRKYRQtvQGPSSTHSPDASALQLEQ--ERLIQLNQEKDfEIAELKKSIEQMDTDHKQTKETLSSSLEE 306
Cdd:PRK03918 565 LDELEEELAELLKELEE--LGFESVEELEERLKELEPfyNEYLELKDAEK-ELEREEKELKKLEEELDKAFEELAETEKR 641
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958783323 307 QKQLAQLINEKEICIV-----KLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERL 376
Cdd:PRK03918 642 LEELRKELEELEKKYSeeeyeELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
112-495 |
1.98e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.43 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 112 ENRELREHIRQNEEELSTVRSELT---QSQTQGSNSNLKDDLLREKETEVQSLKQNLSEIEQLNEHlkqvafDLRIENEK 188
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTvryNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQE------RLRQEKEE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 189 LVVACEDvRNQLEESVAGNnQISLEKAAILEWEKAQLEAEPCRAEKRLLEEGRKYrqtvqgpssthspdasalqlEQERL 268
Cdd:pfam17380 308 KAREVER-RRKLEEAEKAR-QAEMDRQAAIYAEQERMAMERERELERIRQEERKR--------------------ELERI 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 269 IQlnQEKDFEIAELKKsIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEicivkLKEKSSELQRELDRCSQALRKNETL 348
Cdd:pfam17380 366 RQ--EEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILEEERQ-----RKIQQQKVEMEQIRAEQEEARQREV 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 349 RQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEEeikHHQKMIEDQNQ 428
Cdd:pfam17380 438 RRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE---RKQAMIEEERK 514
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958783323 429 NKMqLLQSLQEQKKAMdefkYQHEQMSIThsrlflekdEEIKNLQKTIEQiKAQLQEERQDSQTENS 495
Cdd:pfam17380 515 RKL-LEKEMEERQKAI----YEEERRREA---------EEERRKQQEMEE-RRRIQEQMRKATEERS 566
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
4-495 |
2.23e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 2.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 4 LEELDKQNQEATKHVILIKEQLSKQQSEGDSVIKRLKEELDDekkRTHQL-EDDKMNIIKELNVQKEKLTHSEQVLSDLQ 82
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQD---RIEQLiSEHEVEITGLTEKASSARSQANSIQSQLE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 83 LTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELR----EHIRQNEEELSTVRSELTQSQTQ----GSNSNLKDDLLREK 154
Cdd:pfam15921 303 IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKrmyeDKIEELEKQLVLANSELTEARTErdqfSQESGNLDDQLQKL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 155 ETEVQSLKQNLSEIEQLN--------------EHLKQVAFDLRIENEKLVVACEDVRN----QLEESVA---GNNQiSLE 213
Cdd:pfam15921 383 LADLHKREKELSLEKEQNkrlwdrdtgnsitiDHLRRELDDRNMEVQRLEALLKAMKSecqgQMERQMAaiqGKNE-SLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 214 KAAILeweKAQLEAEPcRAEKRLLEEGRKYRQTVQGPSSTHSPDASALQlEQERLIQLNQEkdfEIAELKKSIEQMDTDH 293
Cdd:pfam15921 462 KVSSL---TAQLESTK-EMLRKVVEELTAKKMTLESSERTVSDLTASLQ-EKERAIEATNA---EITKLRSRVDLKLQEL 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 294 KQTKEtlsssleEQKQLAQLINEKEICIVKLKEKsselqrelDRCSQALRKN-ETLRQTIEEKDRSLGSMKEENNHLQEE 372
Cdd:pfam15921 534 QHLKN-------EGDHLRNVQTECEALKLQMAEK--------DKVIEILRQQiENMTQLVGQHGRTAGAMQVEKAQLEKE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 373 LERlREQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHE 452
Cdd:pfam15921 599 IND-RRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE 677
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1958783323 453 QMsithSRLFLEKDEEiknLQKTIEQIKAQLQEERQD-SQTENS 495
Cdd:pfam15921 678 VL----KRNFRNKSEE---METTTNKLKMQLKSAQSElEQTRNT 714
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-357 |
2.72e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIK---EQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVL 78
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 79 SDLQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELStvrseltqsqtqgSNSNLKDDLLREKETEV 158
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE-------------SLERRIAATERRLEDLE 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 159 QSLKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRAEKR--L 236
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRekL 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 237 LEEGRKYRQTVQGPSSTHSPDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQlaqline 316
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEE------- 997
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958783323 317 keicivkLKEKSSELQRELDRCSQALrknETLRQTIEEKDR 357
Cdd:TIGR02168 998 -------LKERYDFLTAQKEDLTEAK---ETLEEAIEEIDR 1028
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
36-556 |
2.89e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 36 IKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQLTKQKLEGKVEDL---VDQLSKSEKNNFDIQKE 112
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELeelKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 113 NRELREHIRQNEEELSTVRSELTQsqtqgsnsnlkddlLREKETEVQSLKQNLSEIEQLNE---HLKQVAFDLRIENEKL 189
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEE--------------LEEKVKELKELKEKAEEYIKLSEfyeEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 190 VVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRAE----KRLLEEGRKYRQTVQGPSSTH--------SPD 257
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeeaKAKKEELERLKKRLTGLTPEKlekeleelEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 258 ASALQLEQERLIQLNQEKDFEIAELKKSIEQM--------------DTDHKqtKETLSSSLEEQKQLAQLINEKEICIVK 323
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrelTEEHR--KELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 324 LKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQ--QSRAVPVPEPRTLDSTTELESE 401
Cdd:PRK03918 478 LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKliKLKGEIKSLKKELEKLEELKKK 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 402 LSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQS-LQEQKKAMDEFkyqheqMSITHSRLFLE-KDEEIKNLQKTIEQI 479
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKELEELGFESVEELEErLKELEPFYNEY------LELKDAEKELErEEKELKKLEEELDKA 631
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958783323 480 KAQLQEerqdsqTENSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKD 556
Cdd:PRK03918 632 FEELAE------TEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
46-378 |
4.28e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 46 EKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEE 125
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 126 ELSTVRSELTQ------------SQTQGSNSNLKDDL----LREKETEVQSLKQNLSEIEQLNEHLKQVAFDLRIENEKL 189
Cdd:TIGR02169 752 EIENVKSELKElearieeleedlHKLEEALNDLEARLshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 190 VVACEDVRNQLEESvagNNQISLEKAAI--LEWEKAQLEAEPCRAEKRLLEEGRKYrqtvqgpssthspdaSALQLEQER 267
Cdd:TIGR02169 832 EKEIQELQEQRIDL---KEQIKSIEKEIenLNGKKEELEEELEELEAALRDLESRL---------------GDLKKERDE 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 268 LIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEkEICIVKLKEKSSELQRELDRCSQALRKNET 347
Cdd:TIGR02169 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLEDVQAELQRVEEEIRALEP 972
|
330 340 350
....*....|....*....|....*....|....*
gi 1958783323 348 LR----QTIEEKDRSLGSMKEENNHLQEELERLRE 378
Cdd:TIGR02169 973 VNmlaiQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
848-1114 |
5.24e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 5.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 848 LLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDLLikakSDQL 927
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL----EEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 928 HSSNENFANKVSENELLRQAVTNLKERililemdiskLKGENEKVIEASKGKETEYQALQEtnmkfsmmLREKEFECHSM 1007
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEA----------LLEAEAELAEAEEELEELAEELLE--------ALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1008 REKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQR 1087
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260
....*....|....*....|....*..
gi 1958783323 1088 LRDHLLESEDSHTREALAAEDREAKLR 1114
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
6-473 |
7.11e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 7.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 6 ELDKQNQEATKHVILIKEQLSKQQSEGD---SVIKRLKEELDDEKKRTHQLEDDK---MNIIKELNVQKEKLTHSEQVLS 79
Cdd:pfam15921 420 ELDDRNMEVQRLEALLKAMKSECQGQMErqmAAIQGKNESLEKVSSLTAQLESTKemlRKVVEELTAKKMTLESSERTVS 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 80 DLQLTKQKLEGKVEDLVDQLSKseknnfdiqkenreLREHIRQNEEELSTVRSEltqsqtqgsnsnlkDDLLREKETEVQ 159
Cdd:pfam15921 500 DLTASLQEKERAIEATNAEITK--------------LRSRVDLKLQELQHLKNE--------------GDHLRNVQTECE 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 160 SLKQNLSEIEQLNEHLKQvafdlRIENEKLVVACEDvrnqleesvagnnqislEKAAILEWEKAQLEAEPcrAEKRL-LE 238
Cdd:pfam15921 552 ALKLQMAEKDKVIEILRQ-----QIENMTQLVGQHG-----------------RTAGAMQVEKAQLEKEI--NDRRLeLQ 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 239 EGRKYRQTVQGPSSTHSPDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEK- 317
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKs 687
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 318 ---EICIVKLKEKSSELQRELDRCSQALRKNET----LRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAvpVPEPR 390
Cdd:pfam15921 688 eemETTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA--NKEKH 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 391 TL-DSTTELESELSQLHTIKDHLEEE---IKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSIthsRLFLEKD 466
Cdd:pfam15921 766 FLkEEKNKLSQELSTVATEKNKMAGElevLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESV---RLKLQHT 842
|
....*..
gi 1958783323 467 EEIKNLQ 473
Cdd:pfam15921 843 LDVKELQ 849
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
869-1180 |
8.14e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 50.67 E-value: 8.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 869 TLQENNHRLSDSMAASSEGERKEHEQTDSEVK------QLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENFANKvsene 942
Cdd:PLN02939 91 TSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGeqlsdfQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEK----- 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 943 llrqavTNLKERILILEMDISKlkgENEKVIEASKGK-ETEYQALQETNMKFSMMLR-EKEFECHSMREKALafeQLLKE 1020
Cdd:PLN02939 166 ------EALQGKINILEMRLSE---TDARIKLAAQEKiHVEILEEQLEKLRNELLIRgATEGLCVHSLSKEL---DVLKE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1021 KEQGKAGELNQL---LNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESED 1097
Cdd:PLN02939 234 ENMLLKDDIQFLkaeLIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRAT 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1098 SHTREALAAEDREAKLRKKVSVLEEKLVSSsnameNASHQASVQVESLQEQLNMVSKQRD----ETALQLSVSQEQVKQY 1173
Cdd:PLN02939 314 NQVEKAALVLDQNQDLRDKVDKLEASLKEA-----NVSKFSSYKVELLQQKLKLLEERLQasdhEIHSYIQLYQESIKEF 388
|
....*..
gi 1958783323 1174 AMSLTNL 1180
Cdd:PLN02939 389 QDTLSKL 395
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
844-1266 |
1.04e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 844 ESSHLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSE-------VKQLKEKQEVLQNLLKEK 916
Cdd:pfam05483 289 EKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAkaahsfvVTEFEATTCSLEELLRTE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 917 DLLIKAKSDQLHSSNENFANKVSENEllrqAVTNLKERILILEMDISKLKGENEKVIEASKGKETEYQALQETNMKFSMM 996
Cdd:pfam05483 369 QQRLEKNEDQLKIITMELQKKSSELE----EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFL 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 997 LREKEFECHSMREKALAF----EQLLKEKEQGKAGELNQLLNAVK--------SMQEKTVTfqQERDQVMLALKQKQ--- 1061
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIktseEHYLKEVEDLKTELEKEKLKNIEltahcdklLLENKELT--QEASDMTLELKKHQedi 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1062 -----------METSTLQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNA 1130
Cdd:pfam05483 523 inckkqeermlKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1131 MENASHqasvQVESLQEQLNMVSKQRDETALQLSVsqeqvkqYAMSLTNLQMVLEHFQQeekamysaeleKQNQLLTEWK 1210
Cdd:pfam05483 603 IENKNK----NIEELHQENKALKKKGSAENKQLNA-------YEIKVNKLELELASAKQ-----------KFEEIIDNYQ 660
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958783323 1211 KKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLK-EEQIEELKKQNELHQEMLD 1266
Cdd:pfam05483 661 KEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRcQHKIAEMVALMEKHKHQYD 717
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1009-1280 |
1.15e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1009 EKALAFEQLlkeKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRL 1088
Cdd:TIGR02168 210 EKAERYKEL---KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1089 RDHLLEsedshtrealaaedreakLRKKVSVLEEKLVSSSNAMENASHQAsvqvESLQEQLNMVSKQRDETALQLSVSQE 1168
Cdd:TIGR02168 287 QKELYA------------------LANEISRLEQQKQILRERLANLERQL----EELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1169 QVKQYAMSLTNLQMVLEHFQQEEKAMYSAELEKQNQLLT------EWKKKAESLEGKVLSLQERLDEANAALDSASRLTE 1242
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958783323 1243 QLD--LKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTE 1280
Cdd:TIGR02168 425 ELLkkLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
38-734 |
1.22e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 38 RLKEELDDEKKRTHQLEDDKMNIIKELnvqkEKLTHSEQVLSDLQLTKQKLEGKVEDLVDQLSKSEKnnfDIQKENRELR 117
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIRPEF----TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQE---ERQETSAELN 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 118 EHIRQNEEELSTVRSELTQ--SQTQGSNSNLKDDLLREKETEVQSLKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACED 195
Cdd:pfam12128 290 QLLRTLDDQWKEKRDELNGelSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGK 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 196 VRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRAEKRLLEEGRKYRQTVQGPSSTHSPDASALQLEQERLIQLNQEK 275
Cdd:pfam12128 370 HQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 276 DFEIA------ELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQlinekeiCIVKLKEKSSELQRELDRCSQALRKNETLR 349
Cdd:pfam12128 450 KLRLNqatatpELLLQLENFDERIERAREEQEAANAEVERLQS-------ELRQARKRRDQASEALRQASRRLEERQSAL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 350 QTIEEK-DRSLGSMKE----ENNHLQEELERL--REQQSRAVPVPE------------------------PRTLDSTTEL 398
Cdd:pfam12128 523 DELELQlFPQAGTLLHflrkEAPDWEQSIGKVisPELLHRTDLDPEvwdgsvggelnlygvkldlkridvPEWAASEEEL 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 399 ESELSQLhtikdhlEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQ 478
Cdd:pfam12128 603 RERLDKA-------EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 479 IKAQLQEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKEREL-----EIKLLNEKNISLTKQIDQL 553
Cdd:pfam12128 676 RKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLallkaAIAARRSGAKAELKALETW 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 554 SKDEVGKL---TQIIQQKDVEIQALHARISSASYSQDVV--YLQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMID 628
Cdd:pfam12128 756 YKRDLASLgvdPDVIAKLKREIRTLERKIERIAVRRQEVlrYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 629 ILSAKEAALIKLQDENKKMSTRfessgqdmfketiqnLSRIIREKDIEIDALSQkcqtlLTVLQTSGTGSEVGGVNSNQF 708
Cdd:pfam12128 836 DTKLRRAKLEMERKASEKQQVR---------------LSENLRGLRCEMSKLAT-----LKEDANSEQAQGSIGERLAQL 895
|
730 740
....*....|....*....|....*.
gi 1958783323 709 EELLQERDKLKQQVKKMEEWKQQVMT 734
Cdd:pfam12128 896 EDLKLKRDYLSESVKKYVEHFKNVIA 921
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
849-1268 |
1.41e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 849 LQQEVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNL---LKEKDLLIKAKSD 925
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeeaLLEAEAELAEAEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 926 QLHSSNENFANKVSENELLRQAVTNLKERILILEMDISKLKGENEKVIEASKGKETEYQALQETNMKFSMMLREKEFECH 1005
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1006 SMREK--ALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ---------------------- 1061
Cdd:COG1196 460 ALLELlaELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavavligveaayeaa 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1062 METSTLQNEVQRLRDKEARLNQELQRLRDHLLESEdshTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQ 1141
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA---TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1142 VESLQEQLNMVSKQRDETALQLSVSQEQ----VKQYAMSLTNLQMVLEHFQQEEKAMYSAELEKQNQLLTEWKKKAESLE 1217
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGrlreVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1958783323 1218 GKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDA 1268
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2-489 |
1.80e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDdKMNIIKELNVQKEKLTHSEQVLSDL 81
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE-LEAELEELREELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QlTKQKLEGKVEDLVDQLSKSEKNnfdiQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDdlLREKETEVQSL 161
Cdd:COG4717 132 Q-ELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLATEEE--LQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEHLKQVAFDLRIENEKLVVacEDVRNQLEESVAGNNQISLEKAAILEWekAQLEAEPCRAEKRLLEEGR 241
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLEN--ELEAAALEERLKEARLLLLIAAALLAL--LGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 242 KYRQTVQGPSSTHSPDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEici 321
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE--- 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 322 vklkekssELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSR-AVPVPEPRTLDSTTELES 400
Cdd:COG4717 358 --------ELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQlEELLGELEELLEALDEEE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 401 ELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQslQEQKKAMDEFKYQHEQMSITHSRLfLEKDEEIKNLQKTIEQIK 480
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQ--LEEDGELAELLQELEELKAELREL-AEEWAALKLALELLEEAR 506
|
....*....
gi 1958783323 481 AQLQEERQD 489
Cdd:COG4717 507 EEYREERLP 515
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
33-556 |
2.54e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 33 DSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEK-------LTHSEQVLSDLQLTKQKLEGKVEDLVDQLSKSEKN 105
Cdd:TIGR04523 102 NSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNidkflteIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 106 NFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEVQSLKQNLSEIEQLNEHLKQVAFDLRIE 185
Cdd:TIGR04523 182 KLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 186 NEKLVVACEDVRNQLEESVAG----NNQISLEKAAILEWEKaQLEAEPCRAEKRLLEEGRKYRQTVQGPSSTHSPDASAL 261
Cdd:TIGR04523 262 QNKIKKQLSEKQKELEQNNKKikelEKQLNQLKSEISDLNN-QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 262 QLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELdrcsqa 341
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQI------ 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 342 lrknETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQsravpvpeprtldstTELESELSQLHTIKDHLEEEIKHHQK 421
Cdd:TIGR04523 415 ----KKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD---------------SVKELIIKNLDNTRESLETQLKVLSR 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 422 MIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRL------FLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENS 495
Cdd:TIGR04523 476 SINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLtkkissLKEKIEKLESEKKEKESKISDLEDELNKDDFELK 555
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958783323 496 DIFQETKVQSLNIEIGSEKHD--LSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKD 556
Cdd:TIGR04523 556 KENLEKEIDEKNKEIEELKQTqkSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
414-1117 |
2.90e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 414 EEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTE 493
Cdd:TIGR00606 248 DPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 494 NSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQQKdVEIQ 573
Cdd:TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIER-QEDE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 574 ALHARISSASYSQDVVYLQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAA---LIKLQDENKKMSTR 650
Cdd:TIGR00606 407 AKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSsdrILELDQELRKAERE 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 651 FESSGQDMFKETIqnLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEVggvnsNQFEELLQERDKLKQQVKKMEEWKQ 730
Cdd:TIGR00606 487 LSKAEKNSLTETL--KKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTR-----TQMEMLTKDKMDKDEQIRKIKSRHS 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 731 QVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNTKLQVNYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCTTKDL-- 808
Cdd:TIGR00606 560 DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEes 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 809 ----LLGKLDSMSPQLSPGSSLTTQAAEPLkaSQCSGPHESSHLLQQEVDDLRKSLQEKDATIrtlqENNHRLSDSMAAS 884
Cdd:TIGR00606 640 dlerLKEEIEKSSKQRAMLAGATAVYSQFI--TQLTDENQSCCPVCQRVFQTEAELQEFISDL----QSKLRLAPDKLKS 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 885 SEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENFANKVSENELLRQAVTNLKERILILEMDISK 964
Cdd:TIGR00606 714 TESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTI 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 965 LKGENEKVIEASKGKETEYQALQETNMKFSM--MLREKEFECHSMREKALAFEQLLK--EKEQGKAGELNQLLNAVKSMQ 1040
Cdd:TIGR00606 794 MERFQMELKDVERKIAQQAAKLQGSDLDRTVqqVNQEKQEKQHELDTVVSKIELNRKliQDQQEQIQHLKSKTNELKSEK 873
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958783323 1041 EKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKV 1117
Cdd:TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
23-374 |
3.30e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.66 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 23 EQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQLTKQKLEGKVEDLVDQLSKS 102
Cdd:pfam10174 313 ETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVK 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 103 EKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLK----DDLLREKETEVQSLK-QNLSEIEQLNEHLKQ 177
Cdd:pfam10174 393 ERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTAlttlEEALSEKERIIERLKeQREREDRERLEELES 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 178 VAFDLRIENEKLVVACEDVRNQ------LEESVAGNNQISLEKAAILEWEKAQLEA--EPCRAEKRLLEEGRKYRQTVQG 249
Cdd:pfam10174 473 LKKENKDLKEKVSALQPELTEKesslidLKEHASSLASSGLKKDSKLKSLEIAVEQkkEECSKLENQLKKAHNAEEAVRT 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 250 PS-------------STHSPDASALQLEQERLIQLNQE-------KDFEIAELKKSI-EQMDTDHKQTKETLSSSLEEQK 308
Cdd:pfam10174 553 NPeindrirlleqevARYKEESGKAQAEVERLLGILREvenekndKDKKIAELESLTlRQMKEQNKKVANIKHGQQEMKK 632
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958783323 309 QLAQLINEKEICIVKLKEKSSELQRE-----LDRCSQAL----RKNETLRQTIEEKDRSLGSMK-EENNHLQEELE 374
Cdd:pfam10174 633 KGAQLLEEARRREDNLADNSQQLQLEelmgaLEKTRQELdatkARLSSTQQSLAEKDGHLTNLRaERRKQLEEILE 708
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
294-485 |
4.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 294 KQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALRKnetLRQTIEEKDRSLGSMKEENNHLQEEL 373
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA---LEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 374 ERLREQQSRAVPV-------PEPRTL---DSTTELESELSQLHTIKDHLEE----------EIKHHQKMIEDQNQNKMQL 433
Cdd:COG4942 100 EAQKEELAELLRAlyrlgrqPPLALLlspEDFLDAVRRLQYLKYLAPARREqaeelradlaELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958783323 434 LQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQE 485
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-758 |
4.67e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHvilikeqlskqqsegdsvIKRLKEELDDEKKRTHQLEDDkmniIKELNVQKEKLTHSEQVlsDL 81
Cdd:TIGR02169 237 RQKEAIERQLASLEEE------------------LEKLTEEISELEKRLEEIEQL----LEELNKKIKDLGEEEQL--RV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQgsnsnlkddlLREKETEVQSL 161
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR----------RDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVaGNNQISLEKAAILEWEKAQLEAEPCRAEKRLLEegr 241
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK-RELDRLQEELQRLSEELADLNAAIAGIEAKINE--- 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 242 kyrqtvqgpssthspdasaLQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEici 321
Cdd:TIGR02169 439 -------------------LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE--- 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 322 vKLKEKSSELQRELDRCSQALRKNE-----TLRQTIEEKDRSLGSMK------------EENNHLQEELERLREQQ-SRA 383
Cdd:TIGR02169 497 -AQARASEERVRGGRAVEEVLKASIqgvhgTVAQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIELLKRRKaGRA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 384 VPVPeprtLDSTTELESELSQLHT--IKDHLEEEIKHhqkmiEDQNQNKMQ-------LLQSLQEQKKAMDEFKYqheqm 454
Cdd:TIGR02169 576 TFLP----LNKMRDERRDLSILSEdgVIGFAVDLVEF-----DPKYEPAFKyvfgdtlVVEDIEAARRLMGKYRM----- 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 455 sITHSRLFLEKDEEI-------KNLQKTIEQIKAQLQ---EERQDSQTENSDIFQETKvqslniEIGSEKHDLSkAETER 524
Cdd:TIGR02169 642 -VTLEGELFEKSGAMtggsrapRGGILFSRSEPAELQrlrERLEGLKRELSSLQSELR------RIENRLDELS-QELSD 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 525 LVKGIKERELEIKLLNEKNISLTKQIDQLsKDEVGKLTQIIQQKDVEIQALHARIssASYSQDVVYLQQQVQayAMEREK 604
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQEEEKLKERLEEL-EEDLSSLEQEIENVKSELKELEARI--EELEEDLHKLEEALN--DLEARL 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 605 VMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDENKKMStrfessgqdmfkETIQNLSRIIREKDIEIDALSQKC 684
Cdd:TIGR02169 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE------------KEIQELQEQRIDLKEQIKSIEKEI 856
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958783323 685 QTLLTVLQTSGTGSEVGGVNSNQFEE----LLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVS 758
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESrlgdLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
707-1254 |
4.81e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 707 QFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNTKLQVNYTGLIQSYEQNETKLK 786
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 787 NFGQELAQVQHSIGQLCTTKDLLLGKLDSMSPQLspgsslttQAAEPLKAsqcsgphESSHLLQQEVDDLRKSLQEKDAT 866
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEEL--------EEAEEELE-------EAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 867 IRTLQENNHRLSDSMAASSEGERKEH------EQTDSEVKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENFANKVSE 940
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEeleeaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 941 NELLRQAVTNLKERILILEMDISKLKGENEK-------VIEASKGKETEYQALQETNMKFSmmLREKEFECHSMREKALA 1013
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEaaarlllLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1014 FEQLLKEKEQGKAGELN--------QLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQEL 1085
Cdd:COG1196 536 YEAALEAALAAALQNIVveddevaaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1086 QRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSV 1165
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1166 SQEQVKQYAmsltnLQMVLEHFQQEEKAMYSAELEKQNQLLTEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLD 1245
Cdd:COG1196 696 EEALLAEEE-----EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
....*....
gi 1958783323 1246 LKEEQIEEL 1254
Cdd:COG1196 771 RLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
5-560 |
5.35e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 5.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 5 EELDKQNQEATKhviliKEQLSKQQSEgdsviKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDlQLT 84
Cdd:PTZ00121 1421 DEAKKKAEEKKK-----ADEAKKKAEE-----AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD-EAK 1489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 85 KQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEVQSLKQN 164
Cdd:PTZ00121 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA 1569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 165 LSEIEQLNEHLKQVAFDLRIENEKLvvacEDVRNQLEESVAGNNQiSLEKAailewEKAQLEAEPCRAEkrllEEGRKYR 244
Cdd:PTZ00121 1570 KKAEEDKNMALRKAEEAKKAEEARI----EEVMKLYEEEKKMKAE-EAKKA-----EEAKIKAEELKKA----EEEKKKV 1635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 245 QTVQGPSSTHSPDASALQLEQErliqlnqEKDFEIAELKKSIEQmdtDHKQTKETLSSSLEEQKQLAQLINEKEicivkL 324
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEE-------ENKIKAAEEAKKAEE---DKKKAEEAKKAEEDEKKAAEALKKEAE-----E 1700
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 325 KEKSSELQReldRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPVPEPRTLDSTTELESELSQ 404
Cdd:PTZ00121 1701 AKKAEELKK---KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 405 LHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQ 484
Cdd:PTZ00121 1778 EAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKN 1857
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958783323 485 EERQDSQTENSDIFQETKVQSLNIEigsekHDLSKAETERLVKGIKERELEIKLLNEKNISLTKqiDQLSKDEVGK 560
Cdd:PTZ00121 1858 NENGEDGNKEADFNKEKDLKEDDEE-----EIEEADEIEKIDKDDIEREIPNNNMAGKNNDIID--DKLDKDEYIK 1926
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
169-453 |
5.58e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.13 E-value: 5.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 169 EQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEpcraeKRLLEEGRKYRqTVQ 248
Cdd:PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELR-----QQLNNERDEPR-SVP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 249 GPSSTHSPDASALQ-----LEQERLIQLNQEKDFEIAELKKSIEQMDTDHK----------QTKETLSSSLeEQKQLAQL 313
Cdd:PRK10929 100 PNMSTDALEQEILQvssqlLEKSRQAQQEQDRAREISDSLSQLPQQQTEARrqlneierrlQTLGTPNTPL-AQAQLTAL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 314 INEKeiciVKLKEKSSELqrELDRCSqALRKNETLRQTIEekdrslgSMKEENNHLQEELERLREQqsravpvpeprtLD 393
Cdd:PRK10929 179 QAES----AALKALVDEL--ELAQLS-ANNRQELARLRSE-------LAKKRSQQLDAYLQALRNQ------------LN 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 394 STTELESELSQLHTikDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQ 453
Cdd:PRK10929 233 SQRQREAERALEST--ELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQ 290
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
37-649 |
5.60e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 37 KRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENREL 116
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 117 REHIRQNEEELSTVRSELTQsqtqgSNSNLKDDL--LREKETEVQSLKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACE 194
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKE-----NKKNIDKFLteIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 195 DVRNQL--EESVAGNNQISLEKAAILEWEKAQLEAEPCRAEKRLLEEGRKYRQTVQGPSSThspdasalqleQERLIQLN 272
Cdd:TIGR04523 191 KIKNKLlkLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNT-----------QTQLNQLK 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 273 QEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVK-LKEKSSELQRELDRCSQALRKNE----T 347
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKeLKSELKNQEKKLEEIQNQISQNNkiisQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 348 LRQTIEEKDRSLGSMKEENNHLQEELERlREQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQN 427
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEE-KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 428 QNKMQLLQSLQEQKKamdefkyqheqmsithsrLFLEKDEEIKNLQKTIEQIKAQLQEerqdsqTENSDIFQETKVQSLN 507
Cdd:TIGR04523 419 QEKELLEKEIERLKE------------------TIIKNNSEIKDLTNQDSVKELIIKN------LDNTRESLETQLKVLS 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 508 IEIGSEKHDLSKAETE--RLVKGIKERELEIKLLNEKNISLTKQIDQLsKDEVGKLTQIIQQKDVEIQALHARISSASYS 585
Cdd:TIGR04523 475 RSINKIKQNLEQKQKElkSKEKELKKLNEEKKELEEKVKDLTKKISSL-KEKIEKLESEKKEKESKISDLEDELNKDDFE 553
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958783323 586 QDVVYLQQQVQAYAME--------------REKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDENKKMST 649
Cdd:TIGR04523 554 LKKENLEKEIDEKNKEieelkqtqkslkkkQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSS 631
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
285-1235 |
5.98e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 285 SIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRslgsmkE 364
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLN------E 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 365 ENNHLQEELERLREQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLlqslqEQKKAM 444
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL-----ERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 445 DEFKYQHEQMSIThsrlflEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETER 524
Cdd:pfam02463 312 DEEKLKESEKEKK------KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 525 LVKGIKERELEIKLLNEKNISLTKQIdQLSKDEVGKLTQIIQQKDVEIQALHARISSASYSQDVVYLQQQVQAYAMEREK 604
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLL-ELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 605 VMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKC 684
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 685 QTLLTVLQTSGTGSEVGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVmttvQNMQHESAQLQEELHQLQAQVSVDSDNN 764
Cdd:pfam02463 545 ISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLK----SIAVLEIDPILNLAQLDKATLEADEDDK 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 765 TklqvnyTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCTTKDLLLGKLDSMSPQLSPGSSLTTQAAEPLKASQCSGPHE 844
Cdd:pfam02463 621 R------AKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 845 SSHLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDLLIKAKS 924
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 925 DQLHSSNENFANKVSENELLRQAVTNLKERILILEMDISKLKGENEKVIEASKGKETEYQALQETNMKFSMMLREKEFEC 1004
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1005 HSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVtfqqerdqvmlaLKQKQMETSTLQNEVQRLRDKEARLNQE 1084
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK------------EKEEKKELEEESQKLNLLEEKENEIEER 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1085 LQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASH----QASVQVESLQEQLNMVSKQRDETA 1160
Cdd:pfam02463 923 IKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKvnlmAIEEFEEKEERYNKDELEKERLEE 1002
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1161 LQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAMYSAELEKQNQLLT--------------------EWKKKAESLEGK- 1219
Cdd:pfam02463 1003 EKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAELRledpddpfsggieisarppgKGVKNLDLLSGGe 1082
|
970 980 990
....*....|....*....|....*....|.
gi 1958783323 1220 --------VLSLQER-------LDEANAALD 1235
Cdd:pfam02463 1083 ktlvalalIFAIQKYkpapfylLDEIDAALD 1113
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
350-586 |
6.73e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 6.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 350 QTIEEKDRSLGSMKEENNHLQEELERLREQQSRAvpvpeprtLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQN 429
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL--------LKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 430 KMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSDIfqeTKVQSLNIE 509
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL---AELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 510 IGSEKHDLSKAETE------RLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEvGKLTQIIQQKDVEIQALHARISSAS 583
Cdd:COG4942 169 LEAERAELEALLAEleeeraALEALKAERQKLLARLEKELAELAAELAELQQEA-EELEALIARLEAEAAAAAERTPAAG 247
|
...
gi 1958783323 584 YSQ 586
Cdd:COG4942 248 FAA 250
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
148-732 |
6.83e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 6.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 148 DDLLREKETEVQSLKQNLSEIEQLNEHLKQVAFDLRIENEKLvvacEDVRNQLEESvagnnQISLEKaaiLEWEKAQLEA 227
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EELKEEIEEL-----EKELES---LEGSKRKLEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 228 EPCRAEKRLLEEGRKYRQtvqgpssthspdasaLQLEQERLIQLNQEKD--FEIAELKKSIEQMDTDHKQTKETLSSSLE 305
Cdd:PRK03918 260 KIRELEERIEELKKEIEE---------------LEEKVKELKELKEKAEeyIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 306 EQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALRKNETLRQtieekdrslgsmkeennhLQEELERLREQqsravp 385
Cdd:PRK03918 325 GIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKA------------------KKEELERLKKR------ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 386 vpepRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEK 465
Cdd:PRK03918 381 ----LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 466 -DEEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQETKVQSL--------NIEIGSEKHDLSKAETerlvkgiKERELEi 536
Cdd:PRK03918 457 yTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeqlkELEEKLKKYNLEELEK-------KAEEYE- 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 537 kLLNEKNISLTKQIDQLSKD---------EVGKLTQIIQQKDVEIQALHARISSASYS--QDVVYLQQQVQAYAMEREKV 605
Cdd:PRK03918 529 -KLKEKLIKLKGEIKSLKKElekleelkkKLAELEKKLDELEEELAELLKELEELGFEsvEELEERLKELEPFYNEYLEL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 606 MVVLSEKTRENSKLKSEYHKmidiLSAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQ 685
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELE 683
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1958783323 686 TLltvlqtsgtgsevggvnSNQFEELLQERDKLKQQVKKMEEWKQQV 732
Cdd:PRK03918 684 EL-----------------EKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
264-749 |
7.72e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 264 EQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEicivkLKEKSSELQRELDRCSQALR 343
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 344 KNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMI 423
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 424 EdQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKD-EEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQEtk 502
Cdd:COG4717 230 E-QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLiLTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE-- 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 503 vqslnIEIGSEKHDLSKAETERLVkgiKERELEIKLLNEKNISLTKQIDQLskdevgkltqiiQQKDVEIQALHARISSA 582
Cdd:COG4717 307 -----LQALPALEELEEEELEELL---AALGLPPDLSPEELLELLDRIEEL------------QELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 583 SYSQDvvyLQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDENKKmstrfessgqDMFKET 662
Cdd:COG4717 367 ELEQE---IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE----------EELEEE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 663 IQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEVggvnsnqfEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHE 742
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQLEEDGEL--------AELLQELEELKAELRELAEEWAALKLALELLEEA 505
|
....*..
gi 1958783323 743 SAQLQEE 749
Cdd:COG4717 506 REEYREE 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1049-1257 |
7.89e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 7.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1049 ERDQVML--ALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALA-AEDREAKLRKKVSVLEEKLV 1125
Cdd:COG4913 247 AREQIELlePIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1126 SSSNAMENASHQasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQmvlehfqqeekamysAELEKQNQL 1205
Cdd:COG4913 327 ELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---------------EEFAALRAE 388
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958783323 1206 LTEWKKKAESLEGKvlsLQERLDEANAALdsaSRLTEQLDLKEEQIEELKKQ 1257
Cdd:COG4913 389 AAALLEALEEELEA---LEEALAEAEAAL---RDLRRELRELEAEIASLERR 434
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1019-1282 |
1.01e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.20 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1019 KEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQ----RLRDKEARLNQELQ-RLRDHLL 1093
Cdd:PLN02939 120 KDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINilemRLSETDARIKLAAQeKIHVEIL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1094 ESEDSHTREALAAE-----DREAKLRKKVSVLEEKLVSSSNAMEnASHQASVQVESLQEQLNMVSKQRD--ETALQ---- 1162
Cdd:PLN02939 200 EEQLEKLRNELLIRgategLCVHSLSKELDVLKEENMLLKDDIQ-FLKAELIEVAETEERVFKLEKERSllDASLReles 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1163 -LSVSQEQVKQYAM--------SLTNLQMVLEhfQQEEKAMYSAELEKQNQlltewkkkaeSLEGKVLSLQERLDEANAA 1233
Cdd:PLN02939 279 kFIVAQEDVSKLSPlqydcwweKVENLQDLLD--RATNQVEKAALVLDQNQ----------DLRDKVDKLEASLKEANVS 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958783323 1234 LDSASR---LTEQLDLKEEQI----EELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1282
Cdd:PLN02939 347 KFSSYKvelLQQKLKLLEERLqasdHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
250-494 |
1.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 250 PSSTHSPDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSS 329
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 330 ELQRELDRCSQALRKNETLRQTIEEKDR-SLGSMKEENNHLQEELERLREQQsravpvpePRTLDSTTELESELSQLHTI 408
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPlALLLSPEDFLDAVRRLQYLKYLA--------PARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 409 KDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQmsitHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQ 488
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAE----LAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....*.
gi 1958783323 489 DSQTEN 494
Cdd:COG4942 242 RTPAAG 247
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
889-1156 |
1.23e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.66 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 889 RKEHEQTDSEV---KQLKEKQEVLQNLLkEKDLLIKAKSDQLHSSNENFANKVSENELLRQAVTNLKERIlilEMDISKL 965
Cdd:pfam17380 302 RQEKEEKAREVerrRKLEEAEKARQAEM-DRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEI---AMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 966 KGENEKVIEASKGKETEYQALqETNMKFSMMLREKEfecHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVT 1045
Cdd:pfam17380 378 RELERLQMERQQKNERVRQEL-EAARKVKILEEERQ---RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1046 FQQERDQVMLALKQKQMEtstlQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLV 1125
Cdd:pfam17380 454 EEQERQQQVERLRQQEEE----RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
250 260 270
....*....|....*....|....*....|....*.
gi 1958783323 1126 SSSNAMENASHQASVQVE-----SLQEQLNMVSKQR 1156
Cdd:pfam17380 530 YEEERRREAEEERRKQQEmeerrRIQEQMRKATEER 565
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2-787 |
1.38e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQLSKQQSEgdsVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDL 81
Cdd:pfam02463 236 EERIDLLQELLRDEQEEIESSKQEIEKEEE---KLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEElstvrsELTQSQTQGSNSNLKDDLLREKETEVQSL 161
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEE------EEELEKLQEKLEQLEEELLAKKKLESERL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEhlkqvafdlrieneklvvacedVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRAEKRLLEEGR 241
Cdd:pfam02463 387 SSAAKLKEEELE----------------------LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 242 KYRQtvqgpssthspdASALQLEQERLIQLNQEKDFEIAELKKSIEQmdTDHKQTKETLSSSLEEQKQLAQLINEKEICI 321
Cdd:pfam02463 445 KLTE------------EKEELEKQELKLLKDELELKKSEDLLKETQL--VKLQEQLELLLSRQKLEERSQKESKARSGLK 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 322 VKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPVPEPRT-LDSTTELES 400
Cdd:pfam02463 511 VLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLrLLIPKLKLP 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 401 ELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQIK 480
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 481 AQLQEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDEVGK 560
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 561 LTQIIQQKDVEIQALHARISSASYSQDVVYLQQQVQAYAMEREKVMVVLSEKTRENSKLKS----EYHKMIDILSAKEAA 636
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKeeaeLLEEEQLLIEQEEKI 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 637 LIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEVGgvnSNQFEELLQERD 716
Cdd:pfam02463 831 KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE---KEEKKELEEESQ 907
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958783323 717 KLKQQVKKMEEWKQQVMTTVQNMQHESAQlQEELHQLQAQVSVDSDNNTKLQVNYTGLIQSYEQNETKLKN 787
Cdd:pfam02463 908 KLNLLEEKENEIEERIKEEAEILLKYEEE-PEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNL 977
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1013-1242 |
1.47e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1013 AFEQLLKEKEQGKA-GELNQLLNAVKSMQEKTVTFQQERDqvMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLRDH 1091
Cdd:COG4913 240 AHEALEDAREQIELlEPIRELAERYAAARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1092 LLESEDSHT--REALAAE--DREAKLRKKVSVLEEKLvsssnamenasHQASVQVESLQEQLNMVSKQRDETALQLSVSQ 1167
Cdd:COG4913 318 LDALREELDelEAQIRGNggDRLEQLEREIERLEREL-----------EERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958783323 1168 EQVKQYAMSLTNLQMVLehfqQEEKAMYSAELEKQNQLLTEWKKKAESLEGKVLSLQERLDEANAALDSASRLTE 1242
Cdd:COG4913 387 AEAAALLEALEEELEAL----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
53-339 |
2.29e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 53 LEDDKMNIIKELnvQKEKLTHSE---QVLSDLQLTK-QKLEGKVEDLVDQLSK-SEKNNFDIQKEN----RELREHIRQN 123
Cdd:PRK05771 14 LKSYKDEVLEAL--HELGVVHIEdlkEELSNERLRKlRSLLTKLSEALDKLRSyLPKLNPLREEKKkvsvKSLEELIKDV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 124 EEELSTVRSELTQsqtqgsnsnlKDDLLREKETEVQSLKQNLSEIEQL------------NEHLKQVAFDLRIENEKLVV 191
Cdd:PRK05771 92 EEELEKIEKEIKE----------LEEEISELENEIKELEQEIERLEPWgnfdldlslllgFKYVSVFVGTVPEDKLEELK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 192 ACEDVRNQLEESVAGNNQISL-----EKAAILEWEKAQLEAEpcraEKRLLEEGrkyrqtvqgpssthSPDASALQLEqE 266
Cdd:PRK05771 162 LESDVENVEYISTDKGYVYVVvvvlkELSDEVEEELKKLGFE----RLELEEEG--------------TPSELIREIK-E 222
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958783323 267 RLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVK---LKEKSSELQRELDRCS 339
Cdd:PRK05771 223 ELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEgwvPEDRVKKLKELIDKAT 298
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1072-1264 |
2.41e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1072 QRLRDKEARLNQELQRLRDHLLESEDSHTREALA--------AEDREAKLRKKVSVLEEKLVSSSNAMENAShqASVQVE 1143
Cdd:COG3206 189 KELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSelesqlaeARAELAEAEARLAALRAQLGSGPDALPELL--QSPVIQ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1144 SLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLehfqQEEKAMYSAELEKQNQLLtewKKKAESLEGKVLSL 1223
Cdd:COG3206 267 QLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL----QQEAQRILASLEAELEAL---QAREASLQAQLAQL 339
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958783323 1224 QERLDEANAALDSASRLTEQLDLKEEQIEE-LKKQNELHQEM 1264
Cdd:COG3206 340 EARLAELPELEAELRRLEREVEVARELYESlLQRLEEARLAE 381
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2-726 |
2.58e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVIliKEQLSKQQSEGDSVIKRLKEELD--DEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLS 79
Cdd:TIGR00618 203 SQLLTLCTPCMPDTYHER--KQVLEKELKHLREALQQTQQSHAylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 80 DLQlTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLRE-----K 154
Cdd:TIGR00618 281 ETQ-ERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQeihirD 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 155 ETEVQ-SLKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAaiLEWEKAQLEAEpCRAE 233
Cdd:TIGR00618 360 AHEVAtSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRD--LQGQLAHAKKQ-QELQ 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 234 KRLLEEGRkyrqtvqgpssTHSPDASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQL 313
Cdd:TIGR00618 437 QRYAELCA-----------AAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 314 INEKEICIVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLReqqsravpvpeprtlD 393
Cdd:TIGR00618 506 LCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ---------------Q 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 394 STTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKamdefKYQHEQMSITHSRLFLEKDEEIKNLQ 473
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR-----KLQPEQDLQDVRLHLQQCSQELALKL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 474 KTIEQIKAQLQEERQDSQTENSDIFQETKVQSLNIEIGSEKHDLSKAETERlvKGIKERELEIKLLNEKNISLTKQIDQL 553
Cdd:TIGR00618 646 TALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK--EMLAQCQTLLRELETHIEEYDREFNEI 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 554 SKDEVGKLTQIIQQKDveiqALHARISSASYSQDVVyLQQQVQAYAMEREKVMVVLsektrensKLKSEYHKMIDILSAK 633
Cdd:TIGR00618 724 ENASSSLGSDLAARED----ALNQSLKELMHQARTV-LKARTEAHFNNNEEVTAAL--------QTGAELSHLAAEIQFF 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 634 EAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEvggvNSNQFEELLQ 713
Cdd:TIGR00618 791 NRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEE----CSKQLAQLTQ 866
|
730
....*....|...
gi 1958783323 714 ERDKLKQQVKKME 726
Cdd:TIGR00618 867 EQAKIIQLSDKLN 879
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1-219 |
2.69e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1 MAELEE-LDKQNQEATKHVILIKEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDkmniIKELNVQKEKLTHSEQVLS 79
Cdd:PRK05771 52 LTKLSEaLDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEE----ISELENEIKELEQEIERLE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 80 -----DLQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREH-------------IRQNEEELSTVRSELTQSQTQG 141
Cdd:PRK05771 128 pwgnfDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYIstdkgyvyvvvvvLKELSDEVEEELKKLGFERLEL 207
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 142 SNSNLKDDLLREKETEVQSLKqnlSEIEQLNEHLKqvafDLRIENEKLVVACED-VRNQLEESVAGNNQISLEKAAILE 219
Cdd:PRK05771 208 EEEGTPSELIREIKEELEEIE---KERESLLEELK----ELAKKYLEELLALYEyLEIELERAEALSKFLKTDKTFAIE 279
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2-500 |
3.26e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVILIKEQ----LSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQK-EKLTHSEQ 76
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRrlelLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 77 VLSDLQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQ--GSNSNLKDDLlREK 154
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEaeAALRDLRREL-REL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 155 ETEVQSLKQNLSEI-EQLNEHLKQVAFDLRIENEKLVVACE--DVRNqlEESvagnnqislekaailEWEKAqleAE--- 228
Cdd:COG4913 425 EAEIASLERRKSNIpARLLALRDALAEALGLDEAELPFVGEliEVRP--EEE---------------RWRGA---IErvl 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 229 ---------PCRAEKRLLE--EGRKYRQTVQGPS-STHSPDASALQLEQERLI----------------QLNQEKDFEIA 280
Cdd:COG4913 485 ggfaltllvPPEHYAAALRwvNRLHLRGRLVYERvRTGLPDPERPRLDPDSLAgkldfkphpfrawleaELGRRFDYVCV 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 281 ElkkSIEQMDTDHKQ-TKETLSSSLEE--QKQLAQLINEKEIC----IVKLKEKSSE---LQRELDRCSQALRKNETLRQ 350
Cdd:COG4913 565 D---SPEELRRHPRAiTRAGQVKGNGTrhEKDDRRRIRSRYVLgfdnRAKLAALEAElaeLEEELAEAEERLEALEAELD 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 351 TIEEKDRSLGSMKEENNH------LQEELERLREQQSRavpvpeprtLDST----TELESELSQLHTIKDHLEEEIKhhq 420
Cdd:COG4913 642 ALQERREALQRLAEYSWDeidvasAEREIAELEAELER---------LDASsddlAALEEQLEELEAELEELEEELD--- 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 421 KMIEDQNQNKMQLLQSLQEQKKAMDEFKyQHEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQE 500
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLE-AAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
3-646 |
3.39e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 3 ELEELDKQNQEATKHVILIKEQLSKQQ-----------------SEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELN 65
Cdd:pfam01576 27 ELKELEKKHQQLCEEKNALQEQLQAETelcaeaeemrarlaarkQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 66 VQKEKLTHSEQVLSDLQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIrqnEEELSTVRSELTQSQTQGSNSN 145
Cdd:pfam01576 107 DLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERI---SEFTSNLAEEEEKAKSLSKLKN 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 146 LKDDLLREKETEVQSLKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQL----EESVAGNNQISLEKAAILEWE 221
Cdd:pfam01576 184 KHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLakkeEELQAALARLEEETAQKNNAL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 222 KAQLEAEPCRAE-KRLLEEGRKYRQTVQGPSSTHSPDASALQLEQERLI-------QLNQEKDFEIAELKKSIE------ 287
Cdd:pfam01576 264 KKIRELEAQISElQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLdttaaqqELRSKREQEVTELKKALEeetrsh 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 288 -----QMDTDHKQTKETLSSSLEEQKQLAQLINEKEiciVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSM 362
Cdd:pfam01576 344 eaqlqEMRQKHTQALEELTEQLEQAKRNKANLEKAK---QALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQAR 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 363 KEENNHLQEEL-ERLREQQSRAVPVPeprtlDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQL---LQSLQ 438
Cdd:pfam01576 421 LSESERQRAELaEKLSKLQSELESVS-----SLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLstrLRQLE 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 439 EQKKAMDEfkyqheqmsithsrLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSdifqetkvqslNIEIGSEKHDLS 518
Cdd:pfam01576 496 DERNSLQE--------------QLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAG-----------TLEALEEGKKRL 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 519 KAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDeVGKLTQII-----QQKDVEIQALHARISSASYSQDvvylQQ 593
Cdd:pfam01576 551 QRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVD-LDHQRQLVsnlekKQKKFDQMLAEEKAISARYAEE----RD 625
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1958783323 594 QVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDENKK 646
Cdd:pfam01576 626 RAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGK 678
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1-239 |
3.74e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1 MAELEELDKQnQEATKHVIlikEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHS-----E 75
Cdd:TIGR02169 722 EKEIEQLEQE-EEKLKERL---EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQ 797
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 76 QVLSDLQLTKQKLEGKVEDLVDQLSKS-------EKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKD 148
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLtlekeylEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 149 DLLREK----ETEVQSLKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQ 224
Cdd:TIGR02169 878 RDLESRlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957
|
250
....*....|....*
gi 1958783323 225 LEAEPCRAEKRLLEE 239
Cdd:TIGR02169 958 AELQRVEEEIRALEP 972
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
826-1271 |
3.80e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 826 LTTQAAEPLKASQCSGPHESShllQQEVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQ---L 902
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEA---KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKadaA 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 903 KEKQEVLQNL--LKEKDLLIKAKSDQLHSSNEnfANKVSEN-----ELLRQAVTNLKERILILEMDISKLKGENEKVIEA 975
Cdd:PTZ00121 1384 KKKAEEKKKAdeAKKKAEEDKKKADELKKAAA--AKKKADEakkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 976 SKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVML 1055
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1056 ALKQKQMEtstlqnEVQRLrdKEARLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENAS 1135
Cdd:PTZ00121 1542 AEEKKKAD------ELKKA--EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1136 HQASVQVESlqEQLNMVSKQRDETAlQLSVSQEQVKQYAMSLTNlqmvlehfQQEEKAMYSAELEKQNQlltEWKKKAES 1215
Cdd:PTZ00121 1614 KAEEAKIKA--EELKKAEEEKKKVE-QLKKKEAEEKKKAEELKK--------AEEENKIKAAEEAKKAE---EDKKKAEE 1679
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1216 LEgKVLSLQERLDEANAALDSASRLTEQLDLKEEQ----IEELKKQNELHQEMLDDAQKK 1271
Cdd:PTZ00121 1680 AK-KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEekkkAEELKKAEEENKIKAEEAKKE 1738
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
78-552 |
3.82e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 78 LSDLQLTKQKLEGK---VEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREK 154
Cdd:PRK01156 182 ISNIDYLEEKLKSSnleLENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 155 ETEVQSLKQNLSEIEQLNEHLKqvafdlRIENEKLVVAcedvRNQLEESVAGNNQIsLEKAAILEWEKAQLEaepcraek 234
Cdd:PRK01156 262 ESDLSMELEKNNYYKELEERHM------KIINDPVYKN----RNYINDYFKYKNDI-ENKKQILSNIDAEIN-------- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 235 rlleegrKYRQTVQgpssthspDASALQLEQERLIQLNQEKDfeiaELKKSIEQMDTDHKQtketLSSSLEEQKQLAQLI 314
Cdd:PRK01156 323 -------KYHAIIK--------KLSVLQKDYNDYIKKKSRYD----DLNNQILELEGYEMD----YNSYLKSIESLKKKI 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 315 NEKEICIVKLKEKSSELQRELDRCSQALRKN-ETLRQTIEEKDRSLGSMKEENNHLQEELERLREQ----QSRAVpVPEP 389
Cdd:PRK01156 380 EEYSKNIERMSAFISEILKIQEIDPDAIKKElNEINVKLQDISSKVSSLNQRIRALRENLDELSRNmemlNGQSV-CPVC 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 390 RTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQlLQSLQEQKKAMDEFKYQHEQMSITHSRLFLEKDE-- 467
Cdd:PRK01156 459 GTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD-LKKRKEYLESEEINKSINEYNKIESARADLEDIKik 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 468 --EIKNLQKTIEQIKAQLQE-ERQDSQTENSDIFQETKVQSL-NIEIGSEKHDLSKAETERLVKGIKERELEIKLLNEKN 543
Cdd:PRK01156 538 inELKDKHDKYEEIKNRYKSlKLEDLDSKRTSWLNALAVISLiDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYI 617
|
....*....
gi 1958783323 544 ISLTKQIDQ 552
Cdd:PRK01156 618 DKSIREIEN 626
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
434-1124 |
4.97e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 4.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 434 LQSLQEQ-KKAMdefKYQ--HEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQETKVQSLNIEI 510
Cdd:COG1196 202 LEPLERQaEKAE---RYRelKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 511 GSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKDevgkltqiIQQKDVEIQALHARISSAsysqdvvy 590
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE--------LAELEEELEELEEELEEL-------- 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 591 lQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDEnkkmstrfessgQDMFKETIQNLSRII 670
Cdd:COG1196 343 -EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA------------AAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 671 REKDIEIDALSQKCQTLLTVLqtsgtgsevggvnsnqfEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEEL 750
Cdd:COG1196 410 EALLERLERLEEELEELEEAL-----------------AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 751 HQLQAQVSVDSDNNTKLQVNYTGLIQSYEQNETKLKnfGQELAQVQHSIGQLCTTKDLLLGKldsmspqlspGSSLTTQA 830
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE--GVKAALLLAGLRGLAGAVAVLIGV----------EAAYEAAL 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 831 AEPLKASQCSGPHESSHLLQQEVDDLRKSLQEKdATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQ 910
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR-ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 911 NLLKEKDLLIKAKsdqlhssnenfankvsENELLRQAVTNLKERILILEMDISKLKGENEKVIEASKGKEteyqalqetn 990
Cdd:COG1196 620 DTLLGRTLVAARL----------------EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA---------- 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 991 mkfsmmlrekefechsmREKALAFEQLLKEKEQGKAGELNQLLNAvksmqektvtfqQERDQVMLALKQKQMETSTLQNE 1070
Cdd:COG1196 674 -----------------LLEAEAELEELAERLAEEELELEEALLA------------EEEEERELAEAEEERLEEELEEE 724
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1958783323 1071 VQRLRDKEARLNQELQRLRDHLLESEDshTREALAAEDREAKLRKKVSVLEEKL 1124
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEE--ALEELPEPPDLEELERELERLEREI 776
|
|
| GRAB |
pfam10375 |
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type ... |
1278-1323 |
5.29e-04 |
|
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type proteins. This domain is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The Arf small GTPase is localized to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane.
Pssm-ID: 431241 Cd Length: 49 Bit Score: 39.13 E-value: 5.29e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1958783323 1278 STEGKVDKVLMRNLFIGHFHTPK--NQRHEVLRLMGSILGVKREEMEQ 1323
Cdd:pfam10375 1 SSEDTVDRQLVTNLLLSFLSIPRgdTKKFEILQLIANLLEWDDEQREQ 48
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
290-645 |
5.43e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.56 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 290 DTDHKQTKETLSSSLEEQKQlAQLINEKEICIV--KLKEKSSELQRELDRCSQALRKNETLRQTI-EEKDRSLGSMKEEN 366
Cdd:COG5185 206 SIKESETGNLGSESTLLEKA-KEIINIEEALKGfqDPESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENA 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 367 NHLQEELERLREQQSRAVpvpEPRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDE 446
Cdd:COG5185 285 NNLIKQFENTKEKIAEYT---KSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 447 FKyqheqMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDsqtensdifQETKVQSLNIEIGSEKHDLSKaETERLV 526
Cdd:COG5185 362 EI-----ENIVGEVELSKSSEELDSFKDTIESTKESLDEIPQN---------QRGYAQEILATLEDTLKAADR-QIEELQ 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 527 KGIKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQQKDVEIqALHARISSASYSQDVVYLQQQVQAYAMEREKVM 606
Cdd:COG5185 427 RQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEI-NRSVRSKKEDLNEELTQIESRVSTLKATLEKLR 505
|
330 340 350
....*....|....*....|....*....|....*....
gi 1958783323 607 VVLSEKTRENSKLKSEYHKMIDILSAKEAALIKLQDENK 645
Cdd:COG5185 506 AKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALENL 544
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
905-1269 |
5.50e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 905 KQEVLQNLLKE-----KDLLIKAKSDQLHSSNENFANKVSENELLRQaVTNLKERILILEMDISKLKGENEKVIEASKGK 979
Cdd:pfam07888 28 RAELLQNRLEEclqerAELLQAQEAANRQREKEKERYKRDREQWERQ-RRELESRVAELKEELRQSREKHEELEEKYKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 980 ETEYQALQEtnmKFSMMLREKEFECHSMREKALAFeQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQ 1059
Cdd:pfam07888 107 SASSEELSE---EKDALLAQRAAHEARIRELEEDI-KTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQ 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1060 KQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTrEALAAEDREAKLRKKVSVLEEKLVSSSNAmenashqas 1139
Cdd:pfam07888 183 TEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLT-TAHRKEAENEALLEELRSLQERLNASERK--------- 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1140 vqVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLehfqQEEKAMYSAELEKQNQLLTEWKKKAESLEGK 1219
Cdd:pfam07888 253 --VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLAL----REGRARWAQERETLQQSAEADKDRIEKLSAE 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1220 VLSLQERLDEA--------------------------------NAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDD 1267
Cdd:pfam07888 327 LQRLEERLQEErmereklevelgrekdcnrvqlsesrrelqelKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVAD 406
|
..
gi 1958783323 1268 AQ 1269
Cdd:pfam07888 407 AK 408
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
878-1257 |
6.10e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 878 SDSMAASSEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNEnfankvsenelLRQAVTNLKERILI 957
Cdd:TIGR02169 652 SGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDE-----------LSQELSDASRKIGE 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 958 LEMDISKLKGENEKVIEASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVK 1037
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1038 SMQEKTVTFQQER----DQVMLALKQ-KQMETSTLQNEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALAA------ 1106
Cdd:TIGR02169 801 SKLEEEVSRIEARlreiEQKLNRLTLeKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrdl 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1107 EDREAKLRKKVSVLEEKLvsssNAMENASHQASVQVESLQEQLNmvskqrdETALQLSVSQEQVKQYAMSLTNLQMVLEH 1186
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQL----RELERKIEELEAQIEKKRKRLS-------ELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958783323 1187 FQQEEKamysaeLEKQNQLLTEWKKKAESLEGKVL----SLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQ 1257
Cdd:TIGR02169 950 ELSLED------VQAELQRVEEEIRALEPVNMLAIqeyeEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1015-1264 |
7.05e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.27 E-value: 7.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1015 EQLLKEKEQGK-------AGELNQLLNAVKS-MQEKTVTFQQERDQV------MLALKQKQMETSTLQNEVQRlrdkear 1080
Cdd:PRK10929 86 QQLNNERDEPRsvppnmsTDALEQEILQVSSqLLEKSRQAQQEQDRAreisdsLSQLPQQQTEARRQLNEIER------- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1081 lnqelqRLRDhLLESEDSHTREALAAEDREAKLRK-KVSVLEEKLVSSSNAMENA----------SHQASVQVESLQEQL 1149
Cdd:PRK10929 159 ------RLQT-LGTPNTPLAQAQLTALQAESAALKaLVDELELAQLSANNRQELArlrselakkrSQQLDAYLQALRNQL 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1150 NMVSKQRDETALqlsvsqEQVKQYAMSLTNL-QMVLEHFQQEEkaMYSAELEKQNQ---LLTEWKKKAESLEGKVLSLQE 1225
Cdd:PRK10929 232 NSQRQREAERAL------ESTELLAEQSGDLpKSIVAQFKINR--ELSQALNQQAQrmdLIASQQRQAASQTLQVRQALN 303
|
250 260 270
....*....|....*....|....*....|....*....
gi 1958783323 1226 RLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEM 1264
Cdd:PRK10929 304 TLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEM 342
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
348-566 |
8.32e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 8.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 348 LRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPvpepRTLDSTTELESELSQLHTIKDHLEEEIKHHQKMIEDQN 427
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIA----RKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 428 QNKMQLLQSLQEQKKAMDEFKYQHE------------QMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEErqdSQTENS 495
Cdd:PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL---EEIMDE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 496 DIFQETKVQSLNIEIGSEKHDLS---------KAETERLVKGIKERELEIKLL--NEKNISLTKQIDQLSKDEVGKLTQI 564
Cdd:PHA02562 332 FNEQSKKLLELKNKISTNKQSLItlvdkakkvKAAIEELQAEFVDNAEELAKLqdELDKIVKTKSELVKEKYHRGIVTDL 411
|
..
gi 1958783323 565 IQ 566
Cdd:PHA02562 412 LK 413
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
343-808 |
8.96e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 8.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 343 RKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRavpvpeprtldsTTELESELSQLHTIKDHLEEEIKHHQKM 422
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEE------------LEELEAELEELREELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 423 IEDQnqnkmQLLQSLQEQKKAMDEFKYQHEQmsithsrlFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQETk 502
Cdd:COG4717 132 QELE-----ALEAELAELPERLEELEERLEE--------LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDL- 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 503 vqslnieigsekhdlsKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLSKD-EVGKLTQIIQQKDVEIQALHARISS 581
Cdd:COG4717 198 ----------------AEELEELQQRLAELEEELEEAQEELEELEEELEQLENElEAAALEERLKEARLLLLIAAALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 582 ASYSQDVVYLQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKEA---ALIKLQDENKKMSTRFESSGQDM 658
Cdd:COG4717 262 LGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEleeEELEELLAALGLPPDLSPEELLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 659 FKETIQNLSRIIR-----EKDIEIDALSQKCQTLLTvlqtsgtgsEVGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVM 733
Cdd:COG4717 342 LLDRIEELQELLReaeelEEELQLEELEQEIAALLA---------EAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 734 TTVQNMQHESA-----QLQEELHQLQAQVsvdsdnntklqvnytgliqsyEQNETKLKNFGQELAQVQHSIGQLCTTKDL 808
Cdd:COG4717 413 ELLGELEELLEaldeeELEEELEELEEEL---------------------EELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1068-1235 |
9.73e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 9.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1068 QNEVQRLRDKEARLNQELQRLRDHLLESEDSHT---REALAAEDREAKLRKKVSVLEEKLVSSSNAM--ENASHQASVQV 1142
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVemaRELAELNEAESDLEQDYQAASDHLNLVQTALrqQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1143 ESLQEQL---NMVSK----QRDETALQLSVSQEQVKQYAMSLTNLQMVLE-------HFQQEEKAMYSAE---------L 1199
Cdd:PRK04863 358 EELEERLeeqNEVVEeadeQQEENEARAEAAEEEVDELKSQLADYQQALDvqqtraiQYQQAVQALERAKqlcglpdltA 437
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958783323 1200 EKQNQLLTEWKKKAESLEGKVLSLQERLDEANAALD 1235
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS 473
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
848-1287 |
1.01e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 848 LLQQEVDDLRKSLQEKDATIRTLQENNHRlSDSMAASSEGERKEHEQTDSEVKQLKEKQEV-----------LQNLLKEK 916
Cdd:pfam01576 156 LLEERISEFTSNLAEEEEKAKSLSKLKNK-HEAMISDLEERLKKEEKGRQELEKAKRKLEGestdlqeqiaeLQAQIAEL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 917 DLLIKAKSDQLHSSNENFANKVSENELLRQAVTNLKERILILEMDISKLKGENEKVIEASKGKETEYQALQeTNMKFSMM 996
Cdd:pfam01576 235 RAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALK-TELEDTLD 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 997 LREKEFECHSMREKALA------------FEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMET 1064
Cdd:pfam01576 314 TTAAQQELRSKREQEVTelkkaleeetrsHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1065 STLQNEVQRLRDKEARLNQELQRLRDHLLESEdshtREALAAEDREAKLRKKVsvleEKLVSSSNAMENASHQASVQVES 1144
Cdd:pfam01576 394 RTLQQAKQDSEHKRKKLEGQLQELQARLSESE----RQRAELAEKLSKLQSEL----ESVSSLLNEAEGKNIKLSKDVSS 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1145 LQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHfQQEEKAMYSAELEKQNQLLTEWKKKAESLEGKVLSLQ 1224
Cdd:pfam01576 466 LESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE-EEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALE 544
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 1225 ERLDEANAALDSasrLTEQLDLKEEQIEELKKQNELHQEMLDDA------QKKLMSLVNSTEGKVDKVL 1287
Cdd:pfam01576 545 EGKKRLQRELEA---LTQQLEEKAAAYDKLEKTKNRLQQELDDLlvdldhQRQLVSNLEKKQKKFDQML 610
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
115-510 |
1.19e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 115 ELREHIRQ---NEEELSTVRSELTQSQtqgsnsnlkdDLLREKETEVQSLKQNLSEIEQ----LNEHLkQVAFDLRIENE 187
Cdd:PRK04863 280 ERRVHLEEaleLRRELYTSRRQLAAEQ----------YRLVEMARELAELNEAESDLEQdyqaASDHL-NLVQTALRQQE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 188 KLVVACEDVrNQLEESVAGNNQISLEKAAILEWEKAQLEAepcrAEKRLLEEGRKYRQTVQGPSSTHSpdaSALQLEQ-- 265
Cdd:PRK04863 349 KIERYQADL-EELEERLEEQNEVVEEADEQQEENEARAEA----AEEEVDELKSQLADYQQALDVQQT---RAIQYQQav 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 266 ---ERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSsLEEQKQLAQLINEKEicivklkEKSSELQR----ELDRc 338
Cdd:PRK04863 421 qalERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLS-LEQKLSVAQAAHSQF-------EQAYQLVRkiagEVSR- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 339 SQALRK-NETLRQTIEEK--DRSLGSMKeenNHLQEeLERLREQQSRAVPVPE------PRTLDSTTELESELSQLhtik 409
Cdd:PRK04863 492 SEAWDVaRELLRRLREQRhlAEQLQQLR---MRLSE-LEQRLRQQQRAERLLAefckrlGKNLDDEDELEQLQEEL---- 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 410 dhlEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKyQHEQMSITH----SRLFLEKDEEIKNLQKTIEQIKAQLQE 485
Cdd:PRK04863 564 ---EARLESLSESVSEARERRMALRQQLEQLQARIQRLA-ARAPAWLAAqdalARLREQSGEEFEDSQDVTEYMQQLLER 639
|
410 420
....*....|....*....|....*
gi 1958783323 486 ERQDSQtENSDIfqETKVQSLNIEI 510
Cdd:PRK04863 640 ERELTV-ERDEL--AARKQALDEEI 661
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
8-786 |
1.26e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 8 DKQNQEATKHVILIKEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQLTKQK 87
Cdd:pfam15921 102 EKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLS 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 88 LEGKVEDLVDQLSKSEknnfdiQKENRELREHIRQNEEELSTVRSELTQsqtqgsnsnlkddLLREKETEVQSLKQNLSE 167
Cdd:pfam15921 182 HEGVLQEIRSILVDFE------EASGKKIYEHDSMSTMHFRSLGSAISK-------------ILRELDTEISYLKGRIFP 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 168 IEQLNEHLKQVAfdlrieNEKLVVACEDVRNQLEESVAgnnQISLEKAAILEwekaqlEAEPCRAEKRLLEegrkyrqtv 247
Cdd:pfam15921 243 VEDQLEALKSES------QNKIELLLQQHQDRIEQLIS---EHEVEITGLTE------KASSARSQANSIQ--------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 248 qgpssthspdaSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEE-QKQLA---QLINEKEICIVK 323
Cdd:pfam15921 299 -----------SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEElEKQLVlanSELTEARTERDQ 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 324 LKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEEN----NHLQEELErlreqqsravpvpeprtlDSTTELE 399
Cdd:pfam15921 368 FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNsitiDHLRRELD------------------DRNMEVQ 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 400 SELSQLHTIKDHLEEEIKHHQKMIEDQNQNkMQLLQSLQEQKKAMDEFKYQHEQmSITHSRLFLEKDEeiknlqKTIEQI 479
Cdd:pfam15921 430 RLEALLKAMKSECQGQMERQMAAIQGKNES-LEKVSSLTAQLESTKEMLRKVVE-ELTAKKMTLESSE------RTVSDL 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 480 KAQLQEERQDSQTENSDIFQ-----ETKVQSLNIEIGSEKH-DLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQL 553
Cdd:pfam15921 502 TASLQEKERAIEATNAEITKlrsrvDLKLQELQHLKNEGDHlRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQH 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 554 SKD------EVGKLTQIIQQKDVEIQALhaRISSASYSQDVVYLQQQVQAYAMEREKVMVVLSEKTRENSKLKSEYHKMI 627
Cdd:pfam15921 582 GRTagamqvEKAQLEKEINDRRLELQEF--KILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLL 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 628 DILSAKEAALIKLQDENKKMSTRFESSGQDMfKETIQNLSRIIREKDIEidaLSQKCQTLLTVLQTSGTGSEVGGVNSNQ 707
Cdd:pfam15921 660 NEVKTSRNELNSLSEDYEVLKRNFRNKSEEM-ETTTNKLKMQLKSAQSE---LEQTRNTLKSMEGSDGHAMKVAMGMQKQ 735
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958783323 708 FEELLQERDKLKQQVKKMEEwkqqvmtTVQNMQHESAQLQEELHQLQAQVSVDSDNNTKLqvnyTGLIQSYEQNETKLK 786
Cdd:pfam15921 736 ITAKRGQIDALQSKIQFLEE-------AMTNANKEKHFLKEEKNKLSQELSTVATEKNKM----AGELEVLRSQERRLK 803
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
9-799 |
1.47e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 9 KQNQEATKHvilIKEQLSKQQSEGDS---VIKRLKEELDDEKKRTHQLEDDKMNIIKELNVQKEKLTHSEQVLSDLQLTK 85
Cdd:TIGR00606 213 KQYKEKACE---IRDQITSKEAQLESsreIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 86 QKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQ----GSNSNLKDDLLREKETEVQSL 161
Cdd:TIGR00606 290 LKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTEllveQGRLQLQADRHQEHIRARDSL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 162 KQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVR-----NQLEESVAGNNQISLEKAAILEWEKA------QLEAEPC 230
Cdd:TIGR00606 370 IQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDeaktaAQLCADLQSKERLKQEQADEIRDEKKglgrtiELKKEIL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 231 RAEKRLLEEGRKYRQTVQGPSSTHSPDASALQLEQERLIQLNQEKDFE---IAELKKSIEQMDTDHK-----QTKETLSS 302
Cdd:TIGR00606 450 EKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTEtlkKEVKSLQNEKADLDRKlrkldQEMEQLNH 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 303 SLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSR 382
Cdd:TIGR00606 530 HTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNH 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 383 AvpvpePRTLDSTTELESELSQ----------LHTIKDHLEEEIKHHQK-----------------MIEDQNQNKMQLLQ 435
Cdd:TIGR00606 610 I-----NNELESKEEQLSSYEDklfdvcgsqdEESDLERLKEEIEKSSKqramlagatavysqfitQLTDENQSCCPVCQ 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 436 SLQEQKKAMDEFKYQHEQMSITHSRLFLEKDEEIKNLQKTIEQIKAQLQEERQDSQTENSDIFQ-ETKVQSLNIEIGSEK 514
Cdd:TIGR00606 685 RVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPElRNKLQKVNRDIQRLK 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 515 HDLSKAETERlvkGIKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQQKDveiqalharissasySQDVVYLQQQ 594
Cdd:TIGR00606 765 NDIEEQETLL---GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQ---------------GSDLDRTVQQ 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 595 VQAYAMEREKVMVVLSEKTRENSKLKSEYHKMIDILSAKeaaLIKLQDENKKMSTRFESSGQdmFKETIQNLSRIIREKD 674
Cdd:TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK---TNELKSEKLQIGTNLQRRQQ--FEEQLVELSTEVQSLI 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 675 IEIDALSQKCQTLLTVLqtsgtgsevggvnsnqfEELLQERDKLkqqVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQ 754
Cdd:TIGR00606 902 REIKDAKEQDSPLETFL-----------------EKDQQEKEEL---ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 1958783323 755 AQVSVDSDNNTK-LQVNYTGLIQSYEQNETKLKNFGQELAQVQHSI 799
Cdd:TIGR00606 962 NKIQDGKDDYLKqKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
3-497 |
1.76e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 3 ELEELDKQNQEATKHVILIKEQLSKQQsegdsvikrlkEELDDEKKRTHQLEDDKMNIIKelnvQKEKLTHSEQvlsdlQ 82
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQ-----------EELKFVIKELQQLEGSSDRILE----LDQELRKAER-----E 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 83 LTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEVQSLK 162
Cdd:TIGR00606 487 LSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 163 QNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRAE-------KR 235
Cdd:TIGR00606 567 GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEesdlerlKE 646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 236 LLEEGRKYRQTVQGPSSTHSPDASALQLEQ-------ERLIQLNQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQK 308
Cdd:TIGR00606 647 EIEKSSKQRAMLAGATAVYSQFITQLTDENqsccpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 309 QL-------AQLINEKEICIVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQS 381
Cdd:TIGR00606 727 EMlglapgrQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVER 806
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 382 R-AVPVPEPRTLD---STTELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQMSIT 457
Cdd:TIGR00606 807 KiAQQAAKLQGSDldrTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1958783323 458 HSRLfLEKDEEIKNLQKTIEQIKAQ---LQEERQDSQTENSDI 497
Cdd:TIGR00606 887 EEQL-VELSTEVQSLIREIKDAKEQdspLETFLEKDQQEKEEL 928
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
882-1255 |
2.40e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 882 AASSEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNEnfANKVSEnelLRQAVTNLKERILILEMD 961
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE--AKKADE---AKKAEEKKKADELKKAEE 1556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 962 ISKLKgENEKVIEASKGKETEYQALQETN-MKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQ 1040
Cdd:PTZ00121 1557 LKKAE-EKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1041 EKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRlrdhllesEDSHTREALAAEDREAKLRKKVSVL 1120
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK--------AEEDEKKAAEALKKEAEEAKKAEEL 1707
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1121 EEKLVSSSNAMENASHQASVQVESLqEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAMYSAELE 1200
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEEENKIKA-EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958783323 1201 KQNQ-LLTEWKKKAESLEGKVLSLQERLDEANAALDSA-----SRLTEQLDLKEEQIEELK 1255
Cdd:PTZ00121 1787 EEDEkRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSkemedSAIKEVADSKNMQLEEAD 1847
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
881-1118 |
2.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 881 MAASSEGERKEHEQTDSEVKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENFANKVSENELLRQAVTNLKERILILEM 960
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 961 DISKLKGENEKVIEASKGKETEYQALQETNmKFSMMLREKEFEchsmreKALAFEQLLKEKEQGKAGELNQLLNAVKSMQ 1040
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQP-PLALLLSPEDFL------DAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1041 EKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEARLNQELQRLR---DHLLESEDSHTREALAAEDREAKLRKKV 1117
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelAELQQEAEELEALIARLEAEAAAAAERT 243
|
.
gi 1958783323 1118 S 1118
Cdd:COG4942 244 P 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1055-1234 |
2.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1055 LALKQKQMETstLQNEVQRLRDKEARLNQELQRLRDHL-----LESEDSHTREALAAEDREAKLRKKVsvleEKLVSSSN 1129
Cdd:COG4913 612 LAALEAELAE--LEEELAEAEERLEALEAELDALQERRealqrLAEYSWDEIDVASAEREIAELEAEL----ERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1130 AMEnashQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAMYSAELEKQNQLLTEW 1209
Cdd:COG4913 686 DLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
170 180
....*....|....*....|....*...
gi 1958783323 1210 ---KKKAESLEGKVLSLQERLDEANAAL 1234
Cdd:COG4913 762 aveRELRENLEERIDALRARLNRAEEEL 789
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
97-329 |
3.16e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 97 DQLSKSEKNNFDIQKENRELREHIRQNEEELSTVRSELTQSQTQGSNSNlkdDLLREKETEVQSLKQNLSEIEQLNEHLK 176
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA---RRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 177 QVAFDLRIENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRAE--KRLLEEGRKYRQTVQGPSSTH 254
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEelRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958783323 255 SPDASALQLEQERLIQLNQEKDFEIAELKKSIeqmdtdhKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSS 329
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKEL-------AELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1005-1192 |
3.71e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1005 HSMREKALAFEQLLKEKEQGKAGELN-----QLLNAVKSMQEKTVTFQQERDQvmlaLKQKQMETSTLQNEVQRLRDKEA 1079
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNlkelkELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1080 RLNQELQRLRDHL--------LESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASV----QVESLQE 1147
Cdd:COG4717 120 KLEKLLQLLPLYQelealeaeLAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLateeELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958783323 1148 QLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEK 1192
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
33-176 |
4.12e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 33 DSVIKRLKEELDDEKKRTHQLEDdkmniikelnvqkeklTHSEQVLSDLQLTKQKLEGKVEDLvdqlsksEKNNFDIQKE 112
Cdd:COG2433 379 EEALEELIEKELPEEEPEAEREK----------------EHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAE 435
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958783323 113 NRELREHIRQNEEELSTVRSELtqsqtqgSNSNLKDDLLREKETEVQSLKQNLSEIEQLNEHLK 176
Cdd:COG2433 436 LEEKDERIERLERELSEARSEE-------RREIRKDREISRLDREIERLERELEEERERIEELK 492
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
149-440 |
4.16e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 149 DLLREKETEVQSLKQNLSEIEQLNEhlkqvafdlrieneklvvACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAE 228
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLE------------------ALEAELDALQERREALQRLAEYSWDEIDVASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 229 PCRAEKRLLEEGrkyrqtvqgpssthSPDASALQLEQERLIQlnqekdfEIAELKKSIEQMDTDHKQTKETLSSSLEEQK 308
Cdd:COG4913 672 ELEAELERLDAS--------------SDDLAALEEQLEELEA-------ELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 309 QLAQLINEKEicivklKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPVPE 388
Cdd:COG4913 731 ELQDRLEAAE------DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1958783323 389 ---PRTLDSTTELESELSQLhtIKDHLEEeikHHQKMIEDQNQNKMQLLQSLQEQ 440
Cdd:COG4913 805 adlDADLESLPEYLALLDRL--EEDGLPE---YEERFKELLNENSIEFVADLLSK 854
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
148-484 |
4.18e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.75 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 148 DDLLREKETEVQSLKQNLSEIEQLNEhlkqvafdlriENEKLVVACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEA 227
Cdd:PRK04778 111 ESLLDLIEEDIEQILEELQELLESEE-----------KNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEE 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 228 EPCRAEKrLLEEGrkyrqtvqgpssTHSPDASALQLEQERLIQLNQ------------EKDF--EIAELKKSIEQM---- 289
Cdd:PRK04778 180 EFSQFVE-LTESG------------DYVEAREILDQLEEELAALEQimeeipellkelQTELpdQLQELKAGYRELveeg 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 290 -DTDHKQTKETLSSSLEEQKQLAQLINEKEicIVKLKEKSSELQRELDRCSQALRKNETLRQTIEEKDRSLGS----MKE 364
Cdd:PRK04778 247 yHLDHLDIEKEIQDLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDflehAKE 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 365 ENNHLQEELERLreQQSRAVPVPEprtLDSTTELESELSQlhtikdhLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAM 444
Cdd:PRK04778 325 QNKELKEEIDRV--KQSYTLNESE---LESVRQLEKQLES-------LEKQYDEITERIAEQEIAYSELQEELEEILKQL 392
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1958783323 445 DEFKYQHEQMSITHSRlfLEKDE-----EIKNLQKTIEQIKAQLQ 484
Cdd:PRK04778 393 EEIEKEQEKLSEMLQG--LRKDEleareKLERYRNKLHEIKRYLE 435
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1000-1275 |
4.23e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1000 KEFECHSMREKALAFEQllkekeQGKAGELNQLLNAVKsMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKEA 1079
Cdd:COG3096 313 RELEELSARESDLEQDY------QAASDHLNLVQTALR-QQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1080 RLNQELQRLRDHLLESE---DSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMEnashqasvQVESLQEQLNMVSKQR 1156
Cdd:COG3096 386 AAEEEVDSLKSQLADYQqalDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAED--------YLAAFRAKEQQATEEV 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1157 DETALQLSVSQEQVKQYAMSLTNLQMVLEHFQQEEKAmysaelEKQNQLLTEWKK------KAESLEGKVLSLQERLDEA 1230
Cdd:COG3096 458 LELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAW------QTARELLRRYRSqqalaqRLQQLRAQLAELEQRLRQQ 531
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1958783323 1231 NAALDSASRLTEQL-------DLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1275
Cdd:COG3096 532 QNAERLLEEFCQRIgqqldaaEELEELLAELEAQLEELEEQAAEAVEQRSEL 583
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1139-1271 |
4.44e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1139 SVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTNLQMVLehfqqeekAMYSAELEKQNQLLTEWKKKAESLEG 1218
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASL--------SAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958783323 1219 KVLSLQERLDEANAALDSASRlteQLDLKEEQIEELKKQNELHQEMLDDAQKK 1271
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALA---QVELLNQQIAALRRQLAALEAALDASEKR 166
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
397-634 |
4.99e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 397 ELESELSQLHTIKDHLEEEIKHHQKMIEDQNQNKMQLLQSLQ----EQKKAMDEFKYQHEQMSithsrlflekdEEIKNL 472
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQnkydELVEEAKTIKAEIEELT-----------DELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 473 QKTIEQIKAQLQEERQDSQTENSDIFQETKVQSLNieigsEKHDLSKAETErlvkGIKERELEIKLLNEKNISLTKQIDQ 552
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY-----EKGGVCPTCTQ----QISEGPDRITKIKDKLKELQHSLEK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 553 LSK--DEVGKLTQIIQQKDVEIQALHARISSASYS-QDVVYLQQQVQAyAMEREKVMVVlsEKTRENSKLKSEYHKMIDI 629
Cdd:PHA02562 318 LDTaiDELEEIMDEFNEQSKKLLELKNKISTNKQSlITLVDKAKKVKA-AIEELQAEFV--DNAEELAKLQDELDKIVKT 394
|
....*
gi 1958783323 630 LSAKE 634
Cdd:PHA02562 395 KSELV 399
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1-453 |
5.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1 MAELEELDKQNQEATKHVILIKEQLSKQQSegdsvIKRLKEELDDEKKRThQLEDDKMNIIKELNVQKEKLTHSEQVLSD 80
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEE-----LEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 81 LQLTKQKLEGKVEDLVDQLSKSEKNNFDIQKENRELREHIRQ-NEEELSTVRSELTQSQTQGSNSNLKDDLLREKETEVQ 159
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 160 SLKQNLSEIE------QLNEHLKQVAFDLRIENEKLVVACEDVRNQ-LEESVAGNNQISLEKAAILEWEKAQLEAEPCRA 232
Cdd:COG4717 224 ELEEELEQLEneleaaALEERLKEARLLLLIAAALLALLGLGGSLLsLILTIAGVLFLVLGLLALLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 233 EKRLLEEGRKYRQTVQGPSSThspdASALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKQtkETLSSSLEEQKQLAQ 312
Cdd:COG4717 304 AEELQALPALEELEEEELEEL----LAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE--LQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 313 LINEKEI----CIVKLKEKSSELQRELDRCSQALRKNETLRQTIEEkDRSLGSMKEENNHLQEELERLREQQSRAvpvpe 388
Cdd:COG4717 378 EAGVEDEeelrAALEQAEEYQELKEELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEELEEELEEL----- 451
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958783323 389 prtLDSTTELESELSQLHTikDHLEEEIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDEFKYQHEQ 453
Cdd:COG4717 452 ---REELAELEAELEQLEE--DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
826-1272 |
5.00e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 826 LTTQAAEPLKASQCSGPHESShllQQEVDDLRKSLQEKDATIRTLQENNHRLSDSMAASSEGERKEHEQTDSEVKQLKEK 905
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEA---KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 906 QEVlQNLLKEKDlliKAKSDQLHSSNENFANKVSENELLRQAVTNLKERILILEMDISKLKGENEKVIEASKGKETEYQA 985
Cdd:PTZ00121 1552 KKA-EELKKAEE---KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 986 LQETNMKFSMMLREKEFEchsmREKAlafEQLLKEKEQG--KAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQME 1063
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEE----KKKA---EELKKAEEENkiKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1064 TSTLQnEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALAAEDREAKLRK----KVSVLEEKLVSSSNAMENASHQAS 1139
Cdd:PTZ00121 1701 AKKAE-ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKdeeeKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1140 VQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYAMSLTnlqMVLEHFQQEEKAMYSAELEKQNQLLTEWKKKAESLEGK 1219
Cdd:PTZ00121 1780 VIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGN---LVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNK 1856
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1958783323 1220 VlslqerlDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKL 1272
Cdd:PTZ00121 1857 N-------NENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
37-531 |
5.68e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 37 KRLKEELDDEKKRTHQLEDDKMNIIKELNVQKeKLTHSEQVLSD--LQLTKQKlEGKVEDLVDQ-------LSKSEKNNF 107
Cdd:pfam05483 282 ENLKELIEKKDHLTKELEDIKMSLQRSMSTQK-ALEEDLQIATKtiCQLTEEK-EAQMEELNKAkaahsfvVTEFEATTC 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 108 DIQKENRELREHIRQNEEELSTVRSELtqsQTQGSNSNLKDDLLREKETEVQSLKQNLSEIEQL---NEHLKQVAFDLRI 184
Cdd:pfam05483 360 SLEELLRTEQQRLEKNEDQLKIITMEL---QKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIAEELKG 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 185 ENEKLVV---ACEDVRNQLEESVAGNNQISLEKAAILEWEKAQLEAEPCRaekrlleegrkyrqtvqgpSSTHSPDASAL 261
Cdd:pfam05483 437 KEQELIFllqAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLK-------------------NIELTAHCDKL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 262 QLEQERLIqlnQEKDFEIAELKKSIEQMDTDHKQTKETLSSSLEEQKQLAQLINEKEICIVKLKEKSSELQRELDRCSQA 341
Cdd:pfam05483 498 LLENKELT---QEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEEN 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 342 LR-------KNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRAVPVPEPRTLDSTTELESELSQLHTIKDHLEE 414
Cdd:pfam05483 575 ARsieyevlKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEE 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 415 EIKHHQKMIEDQNQNKMQLLQSLQEQKKAMDE-FKYQHE-----QMSITHSRLFLEKDEEikNLQKTIEQIKAQLQEERQ 488
Cdd:pfam05483 655 IIDNYQKEIEDKKISEEKLLEEVEKAKAIADEaVKLQKEidkrcQHKIAEMVALMEKHKH--QYDKIIEERDSELGLYKN 732
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1958783323 489 DSQTENS-DIFQETKVQSLNIEIGSEKHDL--SKAETERLVKGIKE 531
Cdd:pfam05483 733 KEQEQSSaKAALEIELSNIKAELLSLKKQLeiEKEEKEKLKMEAKE 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-202 |
6.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 2 AELEELDKQNQEATKHVilikEQLSKQQSEGDSVIKRLKEELDDEKKRTHQLEddkmniiKELNVQKEKLTHSEQVLSDL 81
Cdd:COG4942 27 AELEQLQQEIAELEKEL----AALKKEEKALLKQLAALERRIAALARRIRALE-------QELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 82 QLTKQKLEGKVEDLVDQLSKSEKNNF---------------------DIQKENRELREHIRQNEEELSTVRSELTQSQTQ 140
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPlalllspedfldavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958783323 141 gsnsnlKDDLLREKETEVQSLKQNLSEIEQLNEHLKQVAFDLRIENEKLVVACEDVRNQLEE 202
Cdd:COG4942 176 ------LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1069-1286 |
6.38e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 6.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1069 NEVQRLRDKEARLNQELQRLRDHLLESEDSHTREALAAEDREA--KLRKKVSVLEEKLvsssNAMENASHQASVQVESLQ 1146
Cdd:PRK04863 796 EELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAElrQLNRRRVELERAL----ADHESQEQQQRSQLEQAK 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1147 EQLNMVSKQRDETAL---------------QLSVSQEQ---VKQYAMSLTNLQMVLEHFQQ--EEKAMYSAELEKQNQLL 1206
Cdd:PRK04863 872 EGLSALNRLLPRLNLladetladrveeireQLDEAEEAkrfVQQHGNALAQLEPIVSVLQSdpEQFEQLKQDYQQAQQTQ 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 1207 TEWKKKAESLEGKV-----LSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEG 1281
Cdd:PRK04863 952 RDAKQQAFALTEVVqrrahFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDA 1031
|
....*
gi 1958783323 1282 KVDKV 1286
Cdd:PRK04863 1032 KRQML 1036
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
343-537 |
6.57e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 6.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 343 RKNETLRQTIEEKDRSLGSMKEENNHLQEELERLReQQSRAVPVPE--PRTLDSTTELESELSQLHTIKDHLEEEIKHHQ 420
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFR-QKNGLVDLSEeaKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958783323 421 KMIEDQNQNKMQLLQS--LQEQKKAMDEFKYQHEQMSithsRLFLEKDEEIKNLQKTIEQIKAQLQEERQD--SQTENSD 496
Cdd:COG3206 247 AQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELS----ARYTPNHPDVIALRAQIAALRAQLQQEAQRilASLEAEL 322
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958783323 497 IFQETKVQSLNIEIGSEKHDLSK-----AETERLvkgikERELEIK 537
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAElpeleAELRRL-----EREVEVA 363
|
|
| |
