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Conserved domains on  [gi|1958780033|ref|XP_038967134|]
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coiled-coil domain-containing protein 30 isoform X2 [Rattus norvegicus]

Protein Classification

coiled-coil domain-containing protein 30( domain architecture ID 12174440)

coiled-coil domain-containing protein 30 (CCDC30) is a DUF4686 domain-containing protein that may be a new cytoskeletal element functionally associated with the filament motor system of the cytoskeleton

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4686 pfam15742
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ...
 210-587 2.00e-139

Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.


:

Pssm-ID: 464838 [Multi-domain]  Cd Length: 384  Bit Score: 413.69  E-value: 2.00e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 210 LTSGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSS 289
Cdd:pfam15742   1 VSSGEKLKYQQQEEVQQLRQNLQRLQILCTSAEKELRYERGKNLDLKQHNSLLQEENIKIKAELKQAQQKLLDSTKMCSS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 290 LMAEWKLCQQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEI 369
Cdd:pfam15742  81 LTAEWKHCQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSRVADAEEKILELQQKLEHAHKVCLTDTCILEKKQLEERI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 370 KEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANS------QQQETLRKQLEIERRKCEEYVKSN 443
Cdd:pfam15742 161 KEASENEAKLKQQYQEEQQKRKLLDQNVNELQQQVRSLQDKEAQLEMTNSqqqlriQQQEAQLKQLENEKRKSDEHLKSN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 444 QELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEM 523
Cdd:pfam15742 241 QELSEKLSSLQQEKEALQEELQQVLKQLDVHVRKYNEKHHHHKAKLRRAKDRLVHEVEQRDERIKQLENEIGILQQQSEK 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958780033 524 EKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRL 587
Cdd:pfam15742 321 EKAFQKQVTAQNEILLLEKRKLLEQLTEQEELIKNNKRTISSVQNRVNFLDEENKQLQENTLRL 384
 
Name Accession Description Interval E-value
DUF4686 pfam15742
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ...
 210-587 2.00e-139

Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.


Pssm-ID: 464838 [Multi-domain]  Cd Length: 384  Bit Score: 413.69  E-value: 2.00e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 210 LTSGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSS 289
Cdd:pfam15742   1 VSSGEKLKYQQQEEVQQLRQNLQRLQILCTSAEKELRYERGKNLDLKQHNSLLQEENIKIKAELKQAQQKLLDSTKMCSS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 290 LMAEWKLCQQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEI 369
Cdd:pfam15742  81 LTAEWKHCQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSRVADAEEKILELQQKLEHAHKVCLTDTCILEKKQLEERI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 370 KEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANS------QQQETLRKQLEIERRKCEEYVKSN 443
Cdd:pfam15742 161 KEASENEAKLKQQYQEEQQKRKLLDQNVNELQQQVRSLQDKEAQLEMTNSqqqlriQQQEAQLKQLENEKRKSDEHLKSN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 444 QELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEM 523
Cdd:pfam15742 241 QELSEKLSSLQQEKEALQEELQQVLKQLDVHVRKYNEKHHHHKAKLRRAKDRLVHEVEQRDERIKQLENEIGILQQQSEK 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958780033 524 EKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRL 587
Cdd:pfam15742 321 EKAFQKQVTAQNEILLLEKRKLLEQLTEQEELIKNNKRTISSVQNRVNFLDEENKQLQENTLRL 384
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 219-461 1.81e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 1.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 219 QHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQ 298
Cdd:COG1196   264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 299 QKVKELELEglrQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEAR 378
Cdd:COG1196   344 EELEEAEEE---LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---------AAAELAAQLEELEEAEEA 411

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 379 LKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKE 458
Cdd:COG1196   412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491


                  ...
gi 1958780033 459 ALW 461
Cdd:COG1196   492 RLL 494
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 212-518 2.83e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.47  E-value: 2.83e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  212 SGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLM 291
Cdd:TIGR02169  664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  292 AEWKLCQQKVKELELEglrqtqsiksQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARqvclsdVCILRRK--QLEEEI 369
Cdd:TIGR02169  744 EDLSSLEQEIENVKSE----------LKELEARIEELEEDLHKLEEALNDLEARLSHSR------IPEIQAElsKLEEEV 807

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  370 KEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDkesqQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEK 449
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE----QIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958780033  450 LASLQQEKealwhehgqflEQLGDHVRNYKDKHHCHKAKLQKVKDR---LTLELEIRNKRIKELEDDTGKLQ 518
Cdd:TIGR02169  884 LGDLKKER-----------DELEAQLRELERKIEELEAQIEKKRKRlseLKAKLEALEEELSEIEDPKGEDE 944
 
Name Accession Description Interval E-value
DUF4686 pfam15742
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ...
 210-587 2.00e-139

Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.


Pssm-ID: 464838 [Multi-domain]  Cd Length: 384  Bit Score: 413.69  E-value: 2.00e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 210 LTSGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSS 289
Cdd:pfam15742   1 VSSGEKLKYQQQEEVQQLRQNLQRLQILCTSAEKELRYERGKNLDLKQHNSLLQEENIKIKAELKQAQQKLLDSTKMCSS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 290 LMAEWKLCQQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEI 369
Cdd:pfam15742  81 LTAEWKHCQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSRVADAEEKILELQQKLEHAHKVCLTDTCILEKKQLEERI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 370 KEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANS------QQQETLRKQLEIERRKCEEYVKSN 443
Cdd:pfam15742 161 KEASENEAKLKQQYQEEQQKRKLLDQNVNELQQQVRSLQDKEAQLEMTNSqqqlriQQQEAQLKQLENEKRKSDEHLKSN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 444 QELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEM 523
Cdd:pfam15742 241 QELSEKLSSLQQEKEALQEELQQVLKQLDVHVRKYNEKHHHHKAKLRRAKDRLVHEVEQRDERIKQLENEIGILQQQSEK 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958780033 524 EKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRL 587
Cdd:pfam15742 321 EKAFQKQVTAQNEILLLEKRKLLEQLTEQEELIKNNKRTISSVQNRVNFLDEENKQLQENTLRL 384
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 219-461 1.81e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 1.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 219 QHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQ 298
Cdd:COG1196   264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 299 QKVKELELEglrQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEAR 378
Cdd:COG1196   344 EELEEAEEE---LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---------AAAELAAQLEELEEAEEA 411

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 379 LKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKE 458
Cdd:COG1196   412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491


                  ...
gi 1958780033 459 ALW 461
Cdd:COG1196   492 RLL 494
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 212-518 2.83e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.47  E-value: 2.83e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  212 SGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLM 291
Cdd:TIGR02169  664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  292 AEWKLCQQKVKELELEglrqtqsiksQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARqvclsdVCILRRK--QLEEEI 369
Cdd:TIGR02169  744 EDLSSLEQEIENVKSE----------LKELEARIEELEEDLHKLEEALNDLEARLSHSR------IPEIQAElsKLEEEV 807

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  370 KEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDkesqQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEK 449
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE----QIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958780033  450 LASLQQEKealwhehgqflEQLGDHVRNYKDKHHCHKAKLQKVKDR---LTLELEIRNKRIKELEDDTGKLQ 518
Cdd:TIGR02169  884 LGDLKKER-----------DELEAQLRELERKIEELEAQIEKKRKRlseLKAKLEALEEELSEIEDPKGEDE 944
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 219-460 4.05e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.95  E-value: 4.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 219 QHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHnslLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQ 298
Cdd:COG1196   236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLE---LEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 299 QKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEAR 378
Cdd:COG1196   313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE---------ALLEAEAELAEAEEELEE 383

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 379 LKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKE 458
Cdd:COG1196   384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLE----EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459


                  ..
gi 1958780033 459 AL 460
Cdd:COG1196   460 AL 461
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 223-459 2.39e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 2.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 223 ELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQQKVK 302
Cdd:COG1196   282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 303 ELELEGLRQTQSIKSQQGLQEKLAREKsktAEAQEKILDLQQKLDHARQvclsdvcilrrkQLEEEIKEAKSTEARLKQQ 382
Cdd:COG1196   362 EAEEALLEAEAELAEAEEELEELAEEL---LEALRAAAELAAQLEELEE------------AEEALLERLERLEEELEEL 426

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958780033 383 CQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEA 459
Cdd:COG1196   427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 223-509 8.04e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 52.75  E-value: 8.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  223 ELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLldnarmhSSLMAEWKLCQQKVK 302
Cdd:TIGR02168  678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL-------ARLEAEVEQLEERIA 750

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  303 ELELEGLRQTQSIksqQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEARLKQQ 382
Cdd:TIGR02168  751 QLSKELTELEAEI---EELEERLEEAEEELAEAEAEIEELEAQIEQLKE---------ELKALREALDELRAELTLLNEE 818

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  383 CQEEQQRRILLDQDVNELQRQVRTLQdkesQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEALWH 462
Cdd:TIGR02168  819 AANLRERLESLERRIAATERRLEDLE----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1958780033  463 EHGQFLEQLGDHVRNYKD-KHHCHKAKLQKVKDRLTLE-LEIRNKRIKE 509
Cdd:TIGR02168  895 ELEELSEELRELESKRSElRRELEELREKLAQLELRLEgLEVRIDNLQE 943
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 298-525 8.98e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.16  E-value: 8.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 298 QQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVclSDVCILRRKQLEEEIKEAKSTEA 377
Cdd:COG1196   221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE--LEELELELEEAQAEEYELLAELA 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 378 RLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEK 457
Cdd:COG1196   299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958780033 458 EALWHEHGQFLEQLGDHVRNYKDKHHchkakLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEMEK 525
Cdd:COG1196   379 EELEELAEELLEALRAAAELAAQLEE-----LEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 223-434 9.53e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.16  E-value: 9.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 223 ELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQQKVK 302
Cdd:COG1196   310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 303 ELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEiKEAKSTEARLKQQ 382
Cdd:COG1196   390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-EEEEALLELLAEL 468

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1958780033 383 CQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERR 434
Cdd:COG1196   469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 303-602 9.99e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.91  E-value: 9.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  303 ELELEGLRQTQSIKSQQglQEKLAREKSKtaeaQEKILDLQQKLDHARQVCLSdvcilrrKQLEEEIKEAKSTEARLKQQ 382
Cdd:TIGR02169  183 EENIERLDLIIDEKRQQ--LERLRREREK----AERYQALLKEKREYEGYELL-------KEKEALERQKEAIERQLASL 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  383 CQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQL---EIERRKCEEYVKSNQELSEKLASLQQEKEA 459
Cdd:TIGR02169  250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgelEAEIASLERSIAEKERELEDAEERLAKLEA 329

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  460 LWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTL---ELEIRNKRIKELEDDTGKLQQKIEMEKVFQGQIMTQND 536
Cdd:TIGR02169  330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDlraELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780033  537 ILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLEQIIRSIQ 602
Cdd:TIGR02169  410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
270-480 5.78e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.45  E-value: 5.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  270 KIELKQAQEKLLDnarmhsslmAEWKLCQQKVKELELEgLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHA 349
Cdd:COG4913    611 KLAALEAELAELE---------EELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERL 680

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  350 RqvclSDVCILRrkQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDkesQQEAANSQQQETLRKQL 429
Cdd:COG4913    681 D----ASSDDLA--ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD---RLEAAEDLARLELRALL 751

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1958780033  430 EiERRKCEEYVKSNQELSEKL-ASLQQEKEALWHEHGQFLEQLGDHVRNYKD 480
Cdd:COG4913    752 E-ERFAAALGDAVERELRENLeERIDALRARLNRAEEELERAMRAFNREWPA 802
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 224-531 6.24e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 46.60  E-value: 6.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  224 LRELRQNLHRLQILSNSAEK--ELRYERGR---SLDLKQHNSLLqEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQ 298
Cdd:TIGR02169  193 IDEKRQQLERLRREREKAERyqALLKEKREyegYELLKEKEALE-RQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  299 QKVKELELEGLRQTQSikSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEAR 378
Cdd:TIGR02169  272 QLLEELNKKIKDLGEE--EQLRVKEKIGELEAEIASLERSIAEKERELEDAEE---------RLAKLEAEIDKLLAEIEE 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  379 lkqqcqeeqqrrilLDQDVNELQRQVRTLQDkesqqeaansqQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKE 458
Cdd:TIGR02169  341 --------------LEREIEEERKRRDKLTE-----------EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780033  459 ALWHEHGQF---LEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEMEKVFQGQI 531
Cdd:TIGR02169  396 KLKREINELkreLDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 240-459 1.80e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.37  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 240 SAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQQKVKELELEGLRQTQSIKSQQ 319
Cdd:COG4942    24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 320 GLQEKLAREKSKTAEAQEKILDLQQK--LDHARQVCLSDVCILRRKQLEEEIKEAKSTEARLKQQCQEEQQRrilLDQDV 397
Cdd:COG4942   104 EELAELLRALYRLGRQPPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE---LEALL 180

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958780033 398 NELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEA 459
Cdd:COG4942   181 AELEEERAALEALKAERQ----KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
298-455 2.99e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 2.99e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  298 QQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVClsDVCILRR--------KQLEEEI 369
Cdd:COG4913    270 RLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL--DELEAQIrgnggdrlEQLEREI 347

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  370 KEAKSTEARLKQQCQEEQQRRILLD-------QDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLeieRRKCEEYvks 442
Cdd:COG4913    348 ERLERELEERERRRARLEALLAALGlplpasaEEFAALRAEAAALLEALEEELEALEEALAEAEAAL---RDLRREL--- 421

                          170
                   ....*....|...
gi 1958780033  443 nQELSEKLASLQQ 455
Cdd:COG4913    422 -RELEAEIASLER 433
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
251-471 7.02e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.08  E-value: 7.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 251 RSLDLKQHNSLLQEENLKIKIELKQAQEKLLDnarmhsslmaewklCQQKVKELELEGlRQTQSIKSQQGLQEKLAREKS 330
Cdd:COG3206   169 RREEARKALEFLEEQLPELRKELEEAEAALEE--------------FRQKNGLVDLSE-EAKLLLQQLSELESQLAEARA 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 331 KTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQV-----R 405
Cdd:COG3206   234 ELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLqqeaqR 313

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780033 406 TLQDKESQQEAANSQQQEtLRKQLEIERRKceeyVKSNQELSEKLASLQQEKEALWHEHGQFLEQL 471
Cdd:COG3206   314 ILASLEAELEALQAREAS-LQAQLAQLEAR----LAELPELEAELRRLEREVEVARELYESLLQRL 374
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
272-460 1.55e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.68  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 272 ELKQAQEKLLD-NARMHSSLMAEWKLCQQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHAR 350
Cdd:COG4717    50 RLEKEADELFKpQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 351 QvclsdvcILRRKQLEEEIKEakstearlkqqcqeeqqrrilLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLE 430
Cdd:COG4717   130 L-------YQELEALEAELAE---------------------LPERLEELEERLEELRELEEELEELEAELAELQEELEE 181

                         170       180       190
                  ....*....|....*....|....*....|
gi 1958780033 431 IERRKCEEYVKSNQELSEKLASLQQEKEAL 460
Cdd:COG4717   182 LLEQLSLATEEELQDLAEELEELQQRLAEL 211
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 361-626 1.63e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 361 RRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQE---AANSQQQETLRKQLEIERrkce 437
Cdd:COG4942    28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEaelAELEKEIAELRAELEAQK---- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 438 eyvksnQELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYkdkhhchkAKLQKVkdrltleLEIRNKRIKELEDDTGKL 517
Cdd:COG4942   104 ------EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL--------QYLKYL-------APARREQAEELRADLAEL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 518 QQKIEMEKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSnkstisafqsktflLDKENQQLQENCLRLMQQISLLEQI 597
Cdd:COG4942   163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR--------------LEKELAELAAELAELQQEAEELEAL 228

                         250       260
                  ....*....|....*....|....*....
gi 1958780033 598 IRSIQIRREEETVITDNAAFEILKKILPL 626
Cdd:COG4942   229 IARLEAEAAAAAERTPAAGFAALKGKLPW 257
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 330-522 1.87e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 330 SKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQD 409
Cdd:COG4942    20 DAAAEAEAELEQLQQEIAELEK---------ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033 410 KESQQEAANSQQQETLRKQL----------------------EIERRkcEEYVKS-NQELSEKLASLQQEKEAlwhehgq 466
Cdd:COG4942    91 EIAELRAELEAQKEELAELLralyrlgrqpplalllspedflDAVRR--LQYLKYlAPARREQAEELRADLAE------- 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780033 467 fLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIE 522
Cdd:COG4942   162 -LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA 216
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
322-522 2.07e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 2.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  322 QEKLAREKSKTAEAQEKILDLQQKLDharqvclsdvcilRRKQLEEEIKEAKSTEARLKQQCQEeqqrrillDQDVNELQ 401
Cdd:COG4913    609 RAKLAALEAELAELEEELAEAEERLE-------------ALEAELDALQERREALQRLAEYSWD--------EIDVASAE 667

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  402 RQVRTLQDKESQQEAANS------QQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEALWHEHGQFLEQLGDHV 475
Cdd:COG4913    668 REIAELEAELERLDASSDdlaaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1958780033  476 RNYKDKHHcHKAKLQKVKDRLTLELEirnKRIKELEDDTGKLQQKIE 522
Cdd:COG4913    748 RALLEERF-AAALGDAVERELRENLE---ERIDALRARLNRAEEELE 790
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 359-607 5.31e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 5.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  359 ILRRKQleeEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEE 438
Cdd:TIGR02168  672 ILERRR---EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS----RQISALRKDLARLEAEVEQ 744

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  439 YVKSNQELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYKDKhhchKAKLQKVKDRLTL---ELEIRNKRIKELEDDTG 515
Cdd:TIGR02168  745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL----EAQIEQLKEELKAlreALDELRAELTLLNEEAA 820

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  516 KLQQKIEMEKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLE 595
Cdd:TIGR02168  821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

                          250
                   ....*....|..
gi 1958780033  596 QIIRSIQIRREE 607
Cdd:TIGR02168  901 EELRELESKRSE 912
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 299-622 5.59e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 5.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  299 QKVKEL--ELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLdharqvclsdvcilrrKQLEEEIKEAKSTE 376
Cdd:TIGR02168  213 ERYKELkaELRELELALLVLRLEELREELEELQEELKEAEEELEELTAEL----------------QELEEKLEELRLEV 276

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  377 ARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQE 456
Cdd:TIGR02168  277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLE----RQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  457 KEALWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDrLTLELEIRNKRIKELEDDTGKLQQKIEMEKvfQGQIMTQND 536
Cdd:TIGR02168  353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ-LELQIASLNNEIERLEARLERLEDRRERLQ--QEIEELLKK 429

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  537 ILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLEQIIRSIQIRREEETVITDNAA 616
Cdd:TIGR02168  430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509


                   ....*.
gi 1958780033  617 FEILKK 622
Cdd:TIGR02168  510 ALLKNQ 515
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
221-410 5.99e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 5.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  221 QGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEEnlkikIELKQAQEKLLDNARMHSSLMAEwklcQQK 300
Cdd:COG4913    616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE-----IDVASAEREIAELEAELERLDAS----SDD 686

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  301 VKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEIKEAKSTEARLK 380
Cdd:COG4913    687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766

                          170       180       190
                   ....*....|....*....|....*....|
gi 1958780033  381 QQCQeeqqrrilLDQDVNELQRQVRTLQDK 410
Cdd:COG4913    767 LREN--------LEERIDALRARLNRAEEE 788
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 210-460 8.27e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.65  E-value: 8.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  210 LTSGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSS 289
Cdd:TIGR02168  700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  290 LMAEWKLCQQKVKELELEGLRQTQSIKSQQG-----------LQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLS--- 355
Cdd:TIGR02168  780 AEAEIEELEAQIEQLKEELKALREALDELRAeltllneeaanLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaa 859

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780033  356 ----------------DVCILRRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANS 419
Cdd:TIGR02168  860 eieeleelieeleselEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1958780033  420 QQQETLRKQLEIE----RRKCEEYVKSNQELSEKLASLQQEKEAL 460
Cdd:TIGR02168  940 NLQERLSEEYSLTleeaEALENKIEDDEEEARRRLKRLENKIKEL 984
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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