|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
227-604 |
4.69e-140 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 415.62 E-value: 4.69e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 227 LTSGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSS 306
Cdd:pfam15742 1 VSSGEKLKYQQQEEVQQLRQNLQRLQILCTSAEKELRYERGKNLDLKQHNSLLQEENIKIKAELKQAQQKLLDSTKMCSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 307 LMAEWKLCQQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEI 386
Cdd:pfam15742 81 LTAEWKHCQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSRVADAEEKILELQQKLEHAHKVCLTDTCILEKKQLEERI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 387 KEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANS------QQQETLRKQLEIERRKCEEYVKSN 460
Cdd:pfam15742 161 KEASENEAKLKQQYQEEQQKRKLLDQNVNELQQQVRSLQDKEAQLEMTNSqqqlriQQQEAQLKQLENEKRKSDEHLKSN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 461 QELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEM 540
Cdd:pfam15742 241 QELSEKLSSLQQEKEALQEELQQVLKQLDVHVRKYNEKHHHHKAKLRRAKDRLVHEVEQRDERIKQLENEIGILQQQSEK 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958780031 541 EKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRL 604
Cdd:pfam15742 321 EKAFQKQVTAQNEILLLEKRKLLEQLTEQEELIKNNKRTISSVQNRVNFLDEENKQLQENTLRL 384
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
236-478 |
1.61e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 236 QHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQ 315
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 316 QKVKELELEglrQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEAR 395
Cdd:COG1196 344 EELEEAEEE---LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---------AAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 396 LKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKE 475
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
...
gi 1958780031 476 ALW 478
Cdd:COG1196 492 RLL 494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
229-535 |
2.63e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 2.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 229 SGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLM 308
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 309 AEWKLCQQKVKELELEglrqtqsiksQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARqvclsdVCILRRK--QLEEEI 386
Cdd:TIGR02169 744 EDLSSLEQEIENVKSE----------LKELEARIEELEEDLHKLEEALNDLEARLSHSR------IPEIQAElsKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 387 KEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDkesqQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEK 466
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE----QIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958780031 467 LASLQQEKealwhehgqflEQLGDHVRNYKDKHHCHKAKLQKVKDR---LTLELEIRNKRIKELEDDTGKLQ 535
Cdd:TIGR02169 884 LGDLKKER-----------DELEAQLRELERKIEELEAQIEKKRKRlseLKAKLEALEEELSEIEDPKGEDE 944
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
236-477 |
3.51e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 3.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 236 QHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHnslLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQ 315
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLE---LEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 316 QKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEAR 395
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE---------ALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 396 LKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKE 475
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLE----EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
..
gi 1958780031 476 AL 477
Cdd:COG1196 460 AL 461
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
240-476 |
1.84e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 240 ELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQQKVK 319
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 320 ELELEGLRQTQSIKSQQGLQEKLAREKsktAEAQEKILDLQQKLDHARQvclsdvcilrrkQLEEEIKEAKSTEARLKQQ 399
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEEL---LEALRAAAELAAQLEELEE------------AEEALLERLERLEEELEEL 426
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958780031 400 CQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEA 476
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-526 |
6.90e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 6.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 240 ELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLldnarmhSSLMAEWKLCQQKVK 319
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL-------ARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 320 ELELEGLRQTQSIksqQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEARLKQQ 399
Cdd:TIGR02168 751 QLSKELTELEAEI---EELEERLEEAEEELAEAEAEIEELEAQIEQLKE---------ELKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 400 CQEEQQRRILLDQDVNELQRQVRTLQdkesQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEALWH 479
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLE----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1958780031 480 EHGQFLEQLGDHVRNYKD-KHHCHKAKLQKVKDRLTLE-LEIRNKRIKE 526
Cdd:TIGR02168 895 ELEELSEELRELESKRSElRRELEELREKLAQLELRLEgLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
240-451 |
8.82e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 8.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 240 ELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQQKVK 319
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 320 ELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEiKEAKSTEARLKQQ 399
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-EEEEALLELLAEL 468
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958780031 400 CQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERR 451
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
315-542 |
8.89e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 8.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 315 QQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVclSDVCILRRKQLEEEIKEAKSTEA 394
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE--LEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 395 RLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEK 474
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958780031 475 EALWHEHGQFLEQLGDHVRNYKDKHHchkakLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEMEK 542
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEE-----LEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
320-619 |
9.33e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 9.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 320 ELELEGLRQTQSIKSQQglQEKLAREKSKtaeaQEKILDLQQKLDHARQVCLSdvcilrrKQLEEEIKEAKSTEARLKQQ 399
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQ--LERLRREREK----AERYQALLKEKREYEGYELL-------KEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 400 CQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQL---EIERRKCEEYVKSNQELSEKLASLQQEKEA 476
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgelEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 477 LWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTL---ELEIRNKRIKELEDDTGKLQQKIEMEKVFQGQIMTQND 553
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDlraELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780031 554 ILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLEQIIRSIQ 619
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
287-497 |
5.34e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 287 KIELKQAQEKLLDnarmhsslmAEWKLCQQKVKELELEgLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHA 366
Cdd:COG4913 611 KLAALEAELAELE---------EELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 367 RqvclSDVCILRrkQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDkesQQEAANSQQQETLRKQL 446
Cdd:COG4913 681 D----ASSDDLA--ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD---RLEAAEDLARLELRALL 751
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958780031 447 EiERRKCEEYVKSNQELSEKL-ASLQQEKEALWHEHGQFLEQLGDHVRNYKD 497
Cdd:COG4913 752 E-ERFAAALGDAVERELRENLeERIDALRARLNRAEEELERAMRAFNREWPA 802
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
241-548 |
5.53e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 241 LRELRQNLHRLQILSNSAEK--ELRYERGR---SLDLKQHNSLLqEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQ 315
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERyqALLKEKREyegYELLKEKEALE-RQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 316 QKVKELELEGLRQTQSikSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEAR 395
Cdd:TIGR02169 272 QLLEELNKKIKDLGEE--EQLRVKEKIGELEAEIASLERSIAEKERELEDAEE---------RLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 396 lkqqcqeeqqrrilLDQDVNELQRQVRTLQDkesqqeaansqQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKE 475
Cdd:TIGR02169 341 --------------LEREIEEERKRRDKLTE-----------EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780031 476 ALWHEHGQF---LEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEMEKVFQGQI 548
Cdd:TIGR02169 396 KLKREINELkreLDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
257-476 |
1.56e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 257 SAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSSLMAEWKLCQQKVKELELEGLRQTQSIKSQQ 336
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 337 GLQEKLAREKSKTAEAQEKILDLQQK--LDHARQVCLSDVCILRRKQLEEEIKEAKSTEARLKQQCQEEQQRrilLDQDV 414
Cdd:COG4942 104 EELAELLRALYRLGRQPPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE---LEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958780031 415 NELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEA 476
Cdd:COG4942 181 AELEEERAALEALKAERQ----KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
315-472 |
2.54e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 315 QQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVClsDVCILRR--------KQLEEEI 386
Cdd:COG4913 270 RLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL--DELEAQIrgnggdrlEQLEREI 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 387 KEAKSTEARLKQQCQEEQQRRILLD-------QDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLeieRRKCEEYvks 459
Cdd:COG4913 348 ERLERELEERERRRARLEALLAALGlplpasaEEFAALRAEAAALLEALEEELEALEEALAEAEAAL---RDLRREL--- 421
|
170
....*....|...
gi 1958780031 460 nQELSEKLASLQQ 472
Cdd:COG4913 422 -RELEAEIASLER 433
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
268-488 |
6.37e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 6.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 268 RSLDLKQHNSLLQEENLKIKIELKQAQEKLLDnarmhsslmaewklCQQKVKELELEGlRQTQSIKSQQGLQEKLAREKS 347
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEE--------------FRQKNGLVDLSE-EAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 348 KTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQV-----R 422
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLqqeaqR 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780031 423 TLQDKESQQEAANSQQQEtLRKQLEIERRKceeyVKSNQELSEKLASLQQEKEALWHEHGQFLEQL 488
Cdd:COG3206 314 ILASLEAELEALQAREAS-LQAQLAQLEAR----LAELPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
289-477 |
1.24e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 289 ELKQAQEKLLD-NARMHSSLMAEWKLCQQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHAR 367
Cdd:COG4717 50 RLEKEADELFKpQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 368 QvclsdvcILRRKQLEEEIKEakstearlkqqcqeeqqrrilLDQDVNELQRQVRTLQDKESQQEAANSQQQETLRKQLE 447
Cdd:COG4717 130 L-------YQELEALEAELAE---------------------LPERLEELEERLEELRELEEELEELEAELAELQEELEE 181
|
170 180 190
....*....|....*....|....*....|
gi 1958780031 448 IERRKCEEYVKSNQELSEKLASLQQEKEAL 477
Cdd:COG4717 182 LLEQLSLATEEELQDLAEELEELQQRLAEL 211
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
378-643 |
1.35e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 378 RRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQE---AANSQQQETLRKQLEIERrkce 454
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEaelAELEKEIAELRAELEAQK---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 455 eyvksnQELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYkdkhhchkAKLQKVkdrltleLEIRNKRIKELEDDTGKL 534
Cdd:COG4942 104 ------EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL--------QYLKYL-------APARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 535 QQKIEMEKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSnkstisafqsktflLDKENQQLQENCLRLMQQISLLEQI 614
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR--------------LEKELAELAAELAELQQEAEELEAL 228
|
250 260
....*....|....*....|....*....
gi 1958780031 615 IRSIQIRREEETVITDNAAFEILKKILPL 643
Cdd:COG4942 229 IARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
347-539 |
1.44e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 347 SKTAEAQEKILDLQQKLDHARQvclsdvcilRRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQD 426
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEK---------ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 427 KESQQEAANSQQQETLRKQL----------------------EIERRkcEEYVKS-NQELSEKLASLQQEKEAlwhehgq 483
Cdd:COG4942 91 EIAELRAELEAQKEELAELLralyrlgrqpplalllspedflDAVRR--LQYLKYlAPARREQAEELRADLAE------- 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958780031 484 fLEQLGDHVRNYKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIE 539
Cdd:COG4942 162 -LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA 216
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
339-539 |
1.78e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 339 QEKLAREKSKTAEAQEKILDLQQKLDharqvclsdvcilRRKQLEEEIKEAKSTEARLKQQCQEeqqrrillDQDVNELQ 418
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLE-------------ALEAELDALQERREALQRLAEYSWD--------EIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 419 RQVRTLQDKESQQEAANS------QQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEALWHEHGQFLEQLGDHV 492
Cdd:COG4913 668 REIAELEAELERLDASSDdlaaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958780031 493 RNYKDKHHcHKAKLQKVKDRLTLELEirnKRIKELEDDTGKLQQKIE 539
Cdd:COG4913 748 RALLEERF-AAALGDAVERELRENLE---ERIDALRARLNRAEEELE 790
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
316-639 |
5.03e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 316 QKVKEL--ELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLdharqvclsdvcilrrKQLEEEIKEAKSTE 393
Cdd:TIGR02168 213 ERYKELkaELRELELALLVLRLEELREELEELQEELKEAEEELEELTAEL----------------QELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 394 ARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQE 473
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLE----RQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 474 KEALWHEHGQFLEQLGDHVRNYKDKHHCHKAKLQKVKDrLTLELEIRNKRIKELEDDTGKLQQKIEMEKvfQGQIMTQND 553
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ-LELQIASLNNEIERLEARLERLEDRRERLQ--QEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 554 ILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLEQIIRSIQIRREEETVITDNAA 633
Cdd:TIGR02168 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
....*.
gi 1958780031 634 FEILKK 639
Cdd:TIGR02168 510 ALLKNQ 515
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
376-624 |
5.30e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 376 ILRRKQleeEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEaansQQQETLRKQLEIERRKCEE 455
Cdd:TIGR02168 672 ILERRR---EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS----RQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 456 YVKSNQELSEKLASLQQEKEALWHEHGQFLEQLGDHVRNYKDKhhchKAKLQKVKDRLTL---ELEIRNKRIKELEDDTG 532
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL----EAQIEQLKEELKAlreALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 533 KLQQKIEMEKVFQGQIMTQNDILLLEKRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLE 612
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250
....*....|..
gi 1958780031 613 QIIRSIQIRREE 624
Cdd:TIGR02168 901 EELRELESKRSE 912
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
238-427 |
5.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 238 QGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEEnlkikIELKQAQEKLLDNARMHSSLMAEwklcQQK 317
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE-----IDVASAEREIAELEAELERLDAS----SDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 318 VKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLSDVCILRRKQLEEEIKEAKSTEARLK 397
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
170 180 190
....*....|....*....|....*....|
gi 1958780031 398 QQCQeeqqrrilLDQDVNELQRQVRTLQDK 427
Cdd:COG4913 767 LREN--------LEERIDALRARLNRAEEE 788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-477 |
7.57e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 227 LTSGEKASYQHQGELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNARMHSS 306
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 307 LMAEWKLCQQKVKELELEGLRQTQSIKSQQG-----------LQEKLAREKSKTAEAQEKILDLQQKLDHARQVCLS--- 372
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAeltllneeaanLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaa 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958780031 373 ----------------DVCILRRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQQEAANS 436
Cdd:TIGR02168 860 eieeleelieeleselEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1958780031 437 QQQETLRKQLEIE----RRKCEEYVKSNQELSEKLASLQQEKEAL 477
Cdd:TIGR02168 940 NLQERLSEEYSLTleeaEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| |
