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Conserved domains on  [gi|1958645302|ref|XP_038967125|]
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paraneoplastic antigen-like protein 8B isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PNMA super family cl20783
PNMA; The PNMA family includes paraneoplastic antigens Ma 1, 2 and 3, found in the serum of ...
 1-114 6.08e-31

PNMA; The PNMA family includes paraneoplastic antigens Ma 1, 2 and 3, found in the serum of patients with paraneoplastic neurological disorders. The family also includes modulator of apoptosis 1, which has a role in death receptor-dependent apoptosis.


The actual alignment was detected with superfamily member pfam14893:

Pssm-ID: 464357  Cd Length: 326  Bit Score: 123.60  E-value: 6.08e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958645302   1 MTMNLLQDWCKELEVEVHRALLITGIPERLQQADIEATLRPNLQPLGNYRLRTVRAVTKEKAQAALVEFGADFDHSAIPI 80
Cdd:pfam14893   1 MALTLLEDWCRGMGVDIHRALLVLGIPEDCGEAEIEETLQAALAPLGRYRVLGRMFRREENAKAALVELAEGVNYALIPR 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958645302  81 HIRGENGIWKILSKDRGQDARVLRQMRRLLLDER 114
Cdd:pfam14893  81 EIPGKGGVWRVVCKPPTQDAEFLKRLNEFLDAEG 114
 
Name Accession Description Interval E-value
PNMA pfam14893
PNMA; The PNMA family includes paraneoplastic antigens Ma 1, 2 and 3, found in the serum of ...
 1-114 6.08e-31

PNMA; The PNMA family includes paraneoplastic antigens Ma 1, 2 and 3, found in the serum of patients with paraneoplastic neurological disorders. The family also includes modulator of apoptosis 1, which has a role in death receptor-dependent apoptosis.


Pssm-ID: 464357  Cd Length: 326  Bit Score: 123.60  E-value: 6.08e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958645302   1 MTMNLLQDWCKELEVEVHRALLITGIPERLQQADIEATLRPNLQPLGNYRLRTVRAVTKEKAQAALVEFGADFDHSAIPI 80
Cdd:pfam14893   1 MALTLLEDWCRGMGVDIHRALLVLGIPEDCGEAEIEETLQAALAPLGRYRVLGRMFRREENAKAALVELAEGVNYALIPR 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958645302  81 HIRGENGIWKILSKDRGQDARVLRQMRRLLLDER 114
Cdd:pfam14893  81 EIPGKGGVWRVVCKPPTQDAEFLKRLNEFLDAEG 114
 
Name Accession Description Interval E-value
PNMA pfam14893
PNMA; The PNMA family includes paraneoplastic antigens Ma 1, 2 and 3, found in the serum of ...
 1-114 6.08e-31

PNMA; The PNMA family includes paraneoplastic antigens Ma 1, 2 and 3, found in the serum of patients with paraneoplastic neurological disorders. The family also includes modulator of apoptosis 1, which has a role in death receptor-dependent apoptosis.


Pssm-ID: 464357  Cd Length: 326  Bit Score: 123.60  E-value: 6.08e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958645302   1 MTMNLLQDWCKELEVEVHRALLITGIPERLQQADIEATLRPNLQPLGNYRLRTVRAVTKEKAQAALVEFGADFDHSAIPI 80
Cdd:pfam14893   1 MALTLLEDWCRGMGVDIHRALLVLGIPEDCGEAEIEETLQAALAPLGRYRVLGRMFRREENAKAALVELAEGVNYALIPR 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958645302  81 HIRGENGIWKILSKDRGQDARVLRQMRRLLLDER 114
Cdd:pfam14893  81 EIPGKGGVWRVVCKPPTQDAEFLKRLNEFLDAEG 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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