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Conserved domains on  [gi|1958776885|ref|XP_038966053|]
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uncharacterized protein C1orf159 homolog isoform X4 [Rattus norvegicus]

Protein Classification

DUF4501 domain-containing protein( domain architecture ID 10633106)

DUF4501 domain-containing protein similar to Homo sapiens protein C1orf159

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4501 pfam14946
Domain of unknown function (DUF4501); This family of proteins is found in eukaryotes. Proteins ...
 33-167 2.92e-94

Domain of unknown function (DUF4501); This family of proteins is found in eukaryotes. Proteins in this family are typically between 167 and 308 amino acids in length. The exact function of this protein remains unknown, but it is thought to be a single-pass membrane protein. This family contains many highly conserved cysteine residues.


:

Pssm-ID: 464393  Cd Length: 179  Bit Score: 270.84  E-value: 2.92e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776885  33 SKAQQPECCMDVVDVNATCLGTGLCGPGCYRHWNADGSASCVRCWNGT--LPTYNGSECRILTGRGMQFPMNRSTGTPGQ 110
Cdd:pfam14946   1 SHVQQPECCVDVVDVNATCPGTNLCGPGCYRRWNEDGSSSCVRCRNETfaVPLYNVTECRNLAGRGANFPMNRSTGTPGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776885 111 PHFGGPHVAASLFLGTLFISTGLILSVAGFFYLKRSSKLPEVFYRRDRAPVLQPGET 167
Cdd:pfam14946  81 PNLGGPQVAASLFLGTLFISSFLILSVASFFYLKRSSKLPNIFYRRNKASVLQPSET 137
 
Name Accession Description Interval E-value
DUF4501 pfam14946
Domain of unknown function (DUF4501); This family of proteins is found in eukaryotes. Proteins ...
 33-167 2.92e-94

Domain of unknown function (DUF4501); This family of proteins is found in eukaryotes. Proteins in this family are typically between 167 and 308 amino acids in length. The exact function of this protein remains unknown, but it is thought to be a single-pass membrane protein. This family contains many highly conserved cysteine residues.


Pssm-ID: 464393  Cd Length: 179  Bit Score: 270.84  E-value: 2.92e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776885  33 SKAQQPECCMDVVDVNATCLGTGLCGPGCYRHWNADGSASCVRCWNGT--LPTYNGSECRILTGRGMQFPMNRSTGTPGQ 110
Cdd:pfam14946   1 SHVQQPECCVDVVDVNATCPGTNLCGPGCYRRWNEDGSSSCVRCRNETfaVPLYNVTECRNLAGRGANFPMNRSTGTPGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776885 111 PHFGGPHVAASLFLGTLFISTGLILSVAGFFYLKRSSKLPEVFYRRDRAPVLQPGET 167
Cdd:pfam14946  81 PNLGGPQVAASLFLGTLFISSFLILSVASFFYLKRSSKLPNIFYRRNKASVLQPSET 137
 
Name Accession Description Interval E-value
DUF4501 pfam14946
Domain of unknown function (DUF4501); This family of proteins is found in eukaryotes. Proteins ...
 33-167 2.92e-94

Domain of unknown function (DUF4501); This family of proteins is found in eukaryotes. Proteins in this family are typically between 167 and 308 amino acids in length. The exact function of this protein remains unknown, but it is thought to be a single-pass membrane protein. This family contains many highly conserved cysteine residues.


Pssm-ID: 464393  Cd Length: 179  Bit Score: 270.84  E-value: 2.92e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776885  33 SKAQQPECCMDVVDVNATCLGTGLCGPGCYRHWNADGSASCVRCWNGT--LPTYNGSECRILTGRGMQFPMNRSTGTPGQ 110
Cdd:pfam14946   1 SHVQQPECCVDVVDVNATCPGTNLCGPGCYRRWNEDGSSSCVRCRNETfaVPLYNVTECRNLAGRGANFPMNRSTGTPGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776885 111 PHFGGPHVAASLFLGTLFISTGLILSVAGFFYLKRSSKLPEVFYRRDRAPVLQPGET 167
Cdd:pfam14946  81 PNLGGPQVAASLFLGTLFISSFLILSVASFFYLKRSSKLPNIFYRRNKASVLQPSET 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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