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Conserved domains on  [gi|1958776686|ref|XP_038965980|]
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serine/arginine repetitive matrix protein 1 isoform X11 [Rattus norvegicus]

Protein Classification

PWI domain-containing protein( domain architecture ID 10478549)

PWI domain-containing protein may function as a splicing factor; similar to Homo sapiens serine/arginine repetitive matrix protein 1 that is involved in numerous pre-mRNA processing events

CATH:  1.20.1390.10
Gene Ontology:  GO:0006397|GO:0003676
PubMed:  10322432|12600940
SCOP:  4000671

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.66e-38

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.66e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 580-776 1.04e-07

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 55.95  E-value: 1.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  580 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 659
Cdd:PHA03307   115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  660 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 739
Cdd:PHA03307   195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTR 268

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1958776686  740 PPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSD 776
Cdd:PHA03307   269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 347-703 5.13e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 5.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  347 SSPPRKTRRLSPSAspPRRRHRPSSPATPPPKTRHSPTPQQSNRarksrvsvSPGRTSGKVTKHKGTEKRESPSPAPKPR 426
Cdd:PHA03247  2590 DAPPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPDPPPPSP--------SPAANEPDPHPPPTVPPPERPRDDPAPG 2659

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  427 KVELSESEEDKG------------SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPS 494
Cdd:PHA03247  2660 RVSRPRRARRLGraaqassppqrpRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  495 RSASPSPRKRQ--KETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP 572
Cdd:PHA03247  2740 APPAVPAGPATpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  573 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTRE 646
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTES 2897

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958776686  647 ARSPQPNKRHSPSPR-PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 703
Cdd:PHA03247  2898 FALPPDQPERPPQPQaPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.66e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.66e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.89e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.89e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776686   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 580-776 1.04e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 55.95  E-value: 1.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  580 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 659
Cdd:PHA03307   115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  660 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 739
Cdd:PHA03307   195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTR 268

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1958776686  740 PPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSD 776
Cdd:PHA03307   269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PHA03247 PHA03247
large tegument protein UL36; Provisional
 347-703 5.13e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 5.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  347 SSPPRKTRRLSPSAspPRRRHRPSSPATPPPKTRHSPTPQQSNRarksrvsvSPGRTSGKVTKHKGTEKRESPSPAPKPR 426
Cdd:PHA03247  2590 DAPPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPDPPPPSP--------SPAANEPDPHPPPTVPPPERPRDDPAPG 2659

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  427 KVELSESEEDKG------------SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPS 494
Cdd:PHA03247  2660 RVSRPRRARRLGraaqassppqrpRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  495 RSASPSPRKRQ--KETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP 572
Cdd:PHA03247  2740 APPAVPAGPATpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  573 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTRE 646
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTES 2897

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958776686  647 ARSPQPNKRHSPSPR-PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 703
Cdd:PHA03247  2898 FALPPDQPERPPQPQaPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
582-715 9.88e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 9.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 582 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 661
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776686 662 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 715
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.66e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.66e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.89e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.89e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776686   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 580-776 1.04e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 55.95  E-value: 1.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  580 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 659
Cdd:PHA03307   115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  660 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 739
Cdd:PHA03307   195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTR 268

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1958776686  740 PPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSD 776
Cdd:PHA03307   269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
580-775 2.96e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.11  E-value: 2.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 580 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 656
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 657 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 736
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958776686 737 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 775
Cdd:PRK12323  534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 577-772 4.54e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 4.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 577 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 656
Cdd:PRK07764  585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 657 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 732
Cdd:PRK07764  665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1958776686 733 TAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 772
Cdd:PRK07764  743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 368-713 9.01e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 9.01e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  368 RPSSPATPPPKtrhSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSV 447
Cdd:PHA03307    64 RFEPPTGPPPG---PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  448 QQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSPSPPPARRRR 527
Cdd:PHA03307   141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSP 220

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  528 SPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR 607
Cdd:PHA03307   221 APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  608 RVSHSPPPKQRSPPVTKR-RSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPvRRGASASPQGRQS 686
Cdd:PHA03307   301 SSPGSGPAPSSPRASSSSsSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR-KRPRPSRAPSSPA 379

                          330       340
                   ....*....|....*....|....*..
gi 1958776686  687 PSPSTRPIRRVSRTPEPKKIKKAASPS 713
Cdd:PHA03307   380 ASAGRPTRRRARAAVAGRARRRDATGR 406
PHA03247 PHA03247
large tegument protein UL36; Provisional
 535-772 1.60e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  535 PPPPPPPRRRRSPT---PPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSH 611
Cdd:PHA03247  2566 RSVPPPRPAPRPSEpavTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  612 SPPPKQRSppvtKRRSPSLSSKHRKGSSPGRSTREARSPQpnkrhspSPRPRApqtsSPPPVRRGASASPQGRQSPSPST 691
Cdd:PHA03247  2646 VPPPERPR----DDPAPGRVSRPRRARRLGRAAQASSPPQ-------RPRRRA----ARPTVGSLTSLADPPPPPPTPEP 2710

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  692 RPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPspvqsQSPSTNWSPAAPAKKAKSPTPSPSP 771
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-----PTTAGPPAPAPPAAPAAGPPRRLTR 2785


                   .
gi 1958776686  772 A 772
Cdd:PHA03247  2786 P 2786
PHA03247 PHA03247
large tegument protein UL36; Provisional
 579-779 3.13e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 3.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  579 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVShSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRST-REARSPQPNKRHS 657
Cdd:PHA03247  2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVLAPAAAlPPAASPAGPLPPP 2831

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  658 PSPRPRAPQTSSPPP----------------VRRGASASPqgrqSPSPSTRPIRRVSRTPEPKKIKKAAS-PSPQSVRRV 720
Cdd:PHA03247  2832 TSAQPTAPPPPPGPPppslplggsvapggdvRRRPPSRSP----AAKPAAPARPPVRRLARPAVSRSTESfALPPDQPER 2907

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958776686  721 SSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAkSPTPSPSPARNSDQEG 779
Cdd:PHA03247  2908 PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP-AGAGEPSGAVPQPWLG 2965
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 542-775 1.17e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 1.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  542 RRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPP 621
Cdd:PHA03307   146 PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPG 225

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  622 VTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSS---PPPVRRGASASPQGRQSPSPSTRPIRRVS 698
Cdd:PHA03307   226 RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASgwnGPSSRPGPASSSSSPRERSPSPSPSSPGS 305

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776686  699 RTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 775
Cdd:PHA03307   306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
PHA03247 PHA03247
large tegument protein UL36; Provisional
 347-703 5.13e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 5.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  347 SSPPRKTRRLSPSAspPRRRHRPSSPATPPPKTRHSPTPQQSNRarksrvsvSPGRTSGKVTKHKGTEKRESPSPAPKPR 426
Cdd:PHA03247  2590 DAPPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPDPPPPSP--------SPAANEPDPHPPPTVPPPERPRDDPAPG 2659

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  427 KVELSESEEDKG------------SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPS 494
Cdd:PHA03247  2660 RVSRPRRARRLGraaqassppqrpRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  495 RSASPSPRKRQ--KETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP 572
Cdd:PHA03247  2740 APPAVPAGPATpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  573 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTRE 646
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTES 2897

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958776686  647 ARSPQPNKRHSPSPR-PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 703
Cdd:PHA03247  2898 FALPPDQPERPPQPQaPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 637-861 6.58e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 6.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 637 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 716
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 717 VRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDK 796
Cdd:PRK07764  665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958776686 797 KHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 861
Cdd:PRK07764  745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 348-682 2.78e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 2.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  348 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRK 427
Cdd:PHA03307    99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  428 VELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKE 507
Cdd:PHA03307   175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  508 TSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRrrtpsppprRRSPSPRRYSPPIQRRYSPSPP---- 583
Cdd:PHA03307   255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS---------PSSPGSGPAPSSPRASSSSSSSress 325

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  584 --------PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREARSPQPNKR 655
Cdd:PHA03307   326 ssstssssESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVAGRARRR 401

                          330       340
                   ....*....|....*....|....*..
gi 1958776686  656 HSPSPRPRAPQTSSPPPVRRGASASPQ 682
Cdd:PHA03307   402 DATGRFPAGRPRPSPLDAGAASGAFYA 428
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
579-680 3.59e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 3.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 579 SPSPPPKRRTASPPPPPKRRASPSPPPKR-------RVSHSPPPKQRSPPVTKRRSP----------SLSSKHRKGSSPG 641
Cdd:PRK12323  455 AAAPAAAARPAAAGPRPVAAAAAAAPARAapaaapaPADDDPPPWEELPPEFASPAPaqpdaapagwVAESIPDPATADP 534

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958776686 642 RSTREARSPQPNKrhSPSPRPRAPQTSSPPPVRRGASAS 680
Cdd:PRK12323  535 DDAFETLAPAPAA--APAPRAAAATEPVVAPRPPRASAS 571
PHA03247 PHA03247
large tegument protein UL36; Provisional
 348-696 4.13e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 4.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  348 SPPRKTRRLSPSA---SPPRRRHRPSSPATPPPKT---RHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 421
Cdd:PHA03247  2662 SRPRRARRLGRAAqasSPPQRPRRRAARPTVGSLTslaDPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  422 APKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDErpkrshvkngevgRRRRHSPSRSASPSP 501
Cdd:PHA03247  2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE-------------SRESLPSPWDPADPP 2808

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  502 RKRQKETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPS 581
Cdd:PHA03247  2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR 2888

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  582 PPPKRRTAS---PPPPPKRRASPSPPPkrrvshsPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRhSP 658
Cdd:PHA03247  2889 PAVSRSTESfalPPDQPERPPQPQAPP-------PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA-VP 2960

                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1958776686  659 SPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 696
Cdd:PHA03247  2961 QPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 577-702 5.19e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 5.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 577 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPPVTkrrSPSLSSKHRKGSSPGRSTREARSPQPN 653
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958776686 654 KRH-SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPE 702
Cdd:PRK14951  444 AVAlAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
582-715 9.88e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 9.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 582 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 661
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776686 662 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 715
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 579-714 1.58e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 42.12  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 579 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRspPVTKRRSPSLSSKHRKGSSpgRSTREARSPQPNKRHSP 658
Cdd:pfam08580 483 STLKQTKRPSKIPRASPNHSGFLSTPSNTATSETPTPALR--PPSRPQPPPPGNRPRWNAS--TNTNDLDVGHNFKPLTL 558

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958776686 659 SPRPRAPQTSSPP--------PVRRGASASPqgrqspSPSTRPIRRVSRTPEPKKIKKAASPSP 714
Cdd:pfam08580 559 TTPSPTPSRSSRSsstlppvsPLSRDKSRSP------APTCRSVSRASRRRASRKPTRIGSPNS 616
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 581-714 3.40e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.00  E-value: 3.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 581 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK-QRSPPVTKRRSPSLSSKHRKgsspgrSTREARSPQPNKRHSPS 659
Cdd:PRK07994  371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApQQAPAVPLPETTSQLLAARQ------QLQRAQGATKAKKSEPA 444

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958776686 660 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 714
Cdd:PRK07994  445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PHA03247 PHA03247
large tegument protein UL36; Provisional
 536-773 3.59e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  536 PPPPPPRRRRSPTPPPRRRTPSPPPRRRSP-----SPRRYSPPIQRRYSPSPPPK--RRTASPPP---------PPKRRA 599
Cdd:PHA03247  2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPapgrvSRPRRARRLGRAAQASSPPQrpRRRAARPTvgsltsladPPPPPP 2706

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  600 SPSPPPKRRVSHSPPP------KQRSPPVTKRRSPSLSSKhrKGSSPGRSTREARSPQPNKRHSPSPrPRAPQTSSPP-- 671
Cdd:PHA03247  2707 TPEPAPHALVSATPLPpgpaaaRQASPALPAAPAPPAVPA--GPATPGGPARPARPPTTAGPPAPAP-PAAPAAGPPRrl 2783

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  672 PVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPST 751
Cdd:PHA03247  2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVR 2863

                          250       260
                   ....*....|....*....|..
gi 1958776686  752 NWSPAAPAkKAKSPTPSPSPAR 773
Cdd:PHA03247  2864 RRPPSRSP-AAKPAAPARPPVR 2884
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 579-690 5.46e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 5.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 579 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 658
Cdd:PRK07764  393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958776686 659 SPRPRAPQTSSPPPVRRGAsASPQGRQSPSPS 690
Cdd:PRK07764  473 APEPTAAPAPAPPAAPAPA-AAPAAPAAPAAP 503
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 579-772 5.49e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 5.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  579 SPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSP-- 650
Cdd:PHA03307   219 SPAPAPGRSAADDAGASSSDSSSSESsgcgwgPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPsp 298

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  651 QPNKRHSPS--PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSG 728
Cdd:PHA03307   299 SPSSPGSGPapSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1958776686  729 SPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 772
Cdd:PHA03307   379 AASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAA 422
Gag_spuma pfam03276
Spumavirus gag protein;
580-688 6.57e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 40.12  E-value: 6.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 580 PSPPPKRRTASPPPPPK-------RRASPSPPPKRRVSHSPPPKQRSPPVTKRRSpslSSKHRKGSSPGRSTREARSPQP 652
Cdd:pfam03276 207 PAIPGIHARAPPGNIARslgddimPSLGDAGMPQPRFAFHPGNPFAEAEGHPFAE---AEGERPRDIPRAPRIDAPSAPA 283

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1958776686 653 NKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPS 688
Cdd:pfam03276 284 IPAIQPIAPPMIPPIGAPIPIPHGASIPGEHIRNPR 319
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
578-780 6.64e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 6.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 578 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTkrrspslsskhrkGSSPGRSTREARSPQPNKRHS 657
Cdd:PRK07003  358 FEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-------------GAAGAALAPKAAAAAAATRAE 424

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 658 PSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKP 737
Cdd:PRK07003  425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1958776686 738 PAPPSPVQSQSPSTNWSPAAPAKKA-KSPTPSPSPARNSDQEGG 780
Cdd:PRK07003  505 AAVPDARAPAAASREDAPAAAAPPApEARPPTPAAAAPAARAGG 548
PHA03247 PHA03247
large tegument protein UL36; Provisional
 574-771 7.48e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 7.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  574 IQRRYSPSPPPKRRTASPPPPP--KRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPS-LSSKHRKGSSPGRSTREARSP 650
Cdd:PHA03247   238 VERRVVISHPLRGDIAAPAPPPvvGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgVWGAALAGAPLALPAPPDPPP 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686  651 QPNKRH--------------SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKK-IKKAASPSPQ 715
Cdd:PHA03247   318 PAPAGDaeeeddedgamevvSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRsARHAATPFAR 397

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958776686  716 SVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNwSPAAPAKKAKSPTPSPSP 771
Cdd:PHA03247   398 GPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP-LPSAEPGSDDGPAPPPER 452
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 580-696 8.95e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 8.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776686 580 PSPPPKRRTASPPPPPKRRASPsPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 659
Cdd:PRK07764  399 PSAAAAAPAAAPAPAAAAPAAA-AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958776686 660 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 696
Cdd:PRK07764  478 AAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRE 514
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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