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Conserved domains on  [gi|1958776680|ref|XP_038965978|]
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serine/arginine repetitive matrix protein 1 isoform X6 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.77e-38

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.77e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
602-797 2.60e-07

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 602 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 678
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 679 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 758
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958776680 759 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 797
Cdd:PRK12323  534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 377-725 7.68e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 7.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  377 SSPPRKTRRLSPSASPPRRR-----HRPSSPATPPPKTRHSPTPqqsNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 451
Cdd:PHA03247  2615 SPLPPDTHAPDPPPPSPSPAanepdPHPPPTVPPPERPRDDPAP---GRVSRPRRARRLGRAAQASSPPQRPRRRAARPT 2691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  452 ApkprkvelseseedkGSKMAAADSVQQRRQYRRQNQQSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETS 531
Cdd:PHA03247  2692 V---------------GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  532 PRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTA 611
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  612 SPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTREARSPQPNKRHSPSPR-P 684
Cdd:PHA03247  2837 TAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTESFALPPDQPERPPQPQaP 2914

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1958776680  685 RAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 725
Cdd:PHA03247  2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.77e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.77e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.94e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.94e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776680   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
602-797 2.60e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 602 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 678
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 679 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 758
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958776680 759 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 797
Cdd:PRK12323  534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PHA03247 PHA03247
large tegument protein UL36; Provisional
 377-725 7.68e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 7.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  377 SSPPRKTRRLSPSASPPRRR-----HRPSSPATPPPKTRHSPTPqqsNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 451
Cdd:PHA03247  2615 SPLPPDTHAPDPPPPSPSPAanepdPHPPPTVPPPERPRDDPAP---GRVSRPRRARRLGRAAQASSPPQRPRRRAARPT 2691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  452 ApkprkvelseseedkGSKMAAADSVQQRRQYRRQNQQSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETS 531
Cdd:PHA03247  2692 V---------------GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  532 PRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTA 611
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  612 SPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTREARSPQPNKRHSPSPR-P 684
Cdd:PHA03247  2837 TAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTESFALPPDQPERPPQPQaP 2914

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1958776680  685 RAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 725
Cdd:PHA03247  2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
604-737 1.02e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 604 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 683
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776680 684 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 737
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.77e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.77e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.94e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.94e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776680   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
602-797 2.60e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 602 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 678
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 679 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 758
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958776680 759 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 797
Cdd:PRK12323  534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 599-794 4.30e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 4.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 599 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 678
Cdd:PRK07764  585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 679 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 754
Cdd:PRK07764  665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1958776680 755 TAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 794
Cdd:PRK07764  743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 601-803 6.30e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 6.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  601 SPSPPPKRRTASPPPPPKR---RASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPqpnkr 677
Cdd:PHA03307   101 AREGSPTPPGPSSPDPPPPtppPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALP----- 175

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  678 hSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQsvrrVSSSRSVSGSPEPTAK 757
Cdd:PHA03307   176 -LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGA----SSSDSSSSESSGCGWG 250

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1958776680  758 KPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGG 803
Cdd:PHA03307   251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296
PHA03247 PHA03247
large tegument protein UL36; Provisional
 377-725 7.68e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 7.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  377 SSPPRKTRRLSPSASPPRRR-----HRPSSPATPPPKTRHSPTPqqsNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 451
Cdd:PHA03247  2615 SPLPPDTHAPDPPPPSPSPAanepdPHPPPTVPPPERPRDDPAP---GRVSRPRRARRLGRAAQASSPPQRPRRRAARPT 2691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  452 ApkprkvelseseedkGSKMAAADSVQQRRQYRRQNQQSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETS 531
Cdd:PHA03247  2692 V---------------GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  532 PRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTA 611
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  612 SPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTREARSPQPNKRHSPSPR-P 684
Cdd:PHA03247  2837 TAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTESFALPPDQPERPPQPQaP 2914

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1958776680  685 RAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 725
Cdd:PHA03247  2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 399-735 1.08e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 1.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  399 PSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQ 478
Cdd:PHA03307    72 PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  479 QRRQYRRQNQQSSSEDERPKRSHVKNgeVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSPSPPPARRRRSPSPAPPPP 558
Cdd:PHA03307   152 PPAAGASPAAVASDAASSRQAALPLS--SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  559 PPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK 638
Cdd:PHA03307   230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAP 309

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  639 QRSPPVTKR-RSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPvRRGASASPQGRQSPSPSTRPIR 717
Cdd:PHA03307   310 SSPRASSSSsSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR-KRPRPSRAPSSPAASAGRPTRR 388

                          330
                   ....*....|....*...
gi 1958776680  718 RVSRTPEPKKIKKAASPS 735
Cdd:PHA03307   389 RARAAVAGRARRRDATGR 406
PHA03247 PHA03247
large tegument protein UL36; Provisional
 557-794 1.48e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  557 PPPPPPPRRRRSPT---PPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSH 633
Cdd:PHA03247  2566 RSVPPPRPAPRPSEpavTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  634 SPPPKQRSppvtKRRSPSLSSKHRKGSSPGRSTREARSPQpnkrhspSPRPRApqtsSPPPVRRGASASPQGRQSPSPST 713
Cdd:PHA03247  2646 VPPPERPR----DDPAPGRVSRPRRARRLGRAAQASSPPQ-------RPRRRA----ARPTVGSLTSLADPPPPPPTPEP 2710

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  714 RPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPspvqsQSPSTNWSPAAPAKKAKSPTPSPSP 793
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-----PTTAGPPAPAPPAAPAAGPPRRLTR 2785


                   .
gi 1958776680  794 A 794
Cdd:PHA03247  2786 P 2786
PHA03247 PHA03247
large tegument protein UL36; Provisional
 389-801 2.34e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  389 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEedkg 468
Cdd:PHA03247  2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHP---- 2642

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  469 skmaaadSVQQRRQYRRQNQQSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSPSPPPARRR 548
Cdd:PHA03247  2643 -------PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHAL 2715

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  549 RSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPK 628
Cdd:PHA03247  2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  629 RRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPV-RRGASASPqgrq 707
Cdd:PHA03247  2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVrRRPPSRSP---- 2871

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  708 SPSPSTRPIRRVSRTPEPKKIKKAAS-PSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAkS 786
Cdd:PHA03247  2872 AAKPAAPARPPVRRLARPAVSRSTESfALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP-A 2950

                          410
                   ....*....|....*
gi 1958776680  787 PTPSPSPARNSDQEG 801
Cdd:PHA03247  2951 GAGEPSGAVPQPWLG 2965
PHA03247 PHA03247
large tegument protein UL36; Provisional
 378-718 4.58e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 4.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  378 SPPRKTRRLSPSA---SPPRRRHRPSSPATPPPKT---RHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 451
Cdd:PHA03247  2662 SRPRRARRLGRAAqasSPPQRPRRRAARPTVGSLTslaDPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  452 APKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRkrqkeTS 531
Cdd:PHA03247  2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP-----AA 2816

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  532 PRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTA 611
Cdd:PHA03247  2817 ALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  612 S---PPPPPKRRASPSPPPkrrvshsPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRhSPSPRPRAPQ 688
Cdd:PHA03247  2897 SfalPPDQPERPPQPQAPP-------PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA-VPQPWLGALV 2968

                          330       340       350
                   ....*....|....*....|....*....|
gi 1958776680  689 TSSPPPVRRGASASPQGRQSPSPSTRPIRR 718
Cdd:PHA03247  2969 PGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 659-883 5.87e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 5.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 659 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 738
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 739 VRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDK 818
Cdd:PRK07764  665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958776680 819 KHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 883
Cdd:PRK07764  745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 384-704 8.46e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 8.46e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  384 RRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKhKGTEKRESPSPAPKPRKVELSES 463
Cdd:PHA03307   138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP-PPSTPPAAASPRPPRRSSPISAS 216

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  464 EEDKGSKMAAADSVQQRRqyrrqnqqSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSPSPP 543
Cdd:PHA03307   217 ASSPAPAPGRSAADDAGA--------SSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSS 288

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  544 PARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRrspsprrysppiqrrySPSPPPKRRTASPPPPPKRRaSP 623
Cdd:PHA03307   289 SSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSST----------------SSSSESSRGAAVSPGPSPSR-SP 351

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  624 SPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASP 703
Cdd:PHA03307   352 SPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFY 427


                   .
gi 1958776680  704 Q 704
Cdd:PHA03307   428 A 428
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
601-702 3.17e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 3.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 601 SPSPPPKRRTASPPPPPKRRASPSPPPKR-------RVSHSPPPKQRSPPVTKRRSP----------SLSSKHRKGSSPG 663
Cdd:PRK12323  455 AAAPAAAARPAAAGPRPVAAAAAAAPARAapaaapaPADDDPPPWEELPPEFASPAPaqpdaapagwVAESIPDPATADP 534

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958776680 664 RSTREARSPQPNKrhSPSPRPRAPQTSSPPPVRRGASAS 702
Cdd:PRK12323  535 DDAFETLAPAPAA--APAPRAAAATEPVVAPRPPRASAS 571
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 599-724 5.35e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 5.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 599 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPPVTkrrSPSLSSKHRKGSSPGRSTREARSPQPN 675
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958776680 676 KRH-SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPE 724
Cdd:PRK14951  444 AVAlAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 617-792 5.61e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 43.91  E-value: 5.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 617 PKRRASPSPPPKRRVSHSPPPKQ-----RSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQpnkRHSPSPRPRAPQTSS 691
Cdd:PTZ00449  543 PKEGGKPGETKEGEVGKKPGPAKehkpsKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQ---RPTRPKSPKLPELLD 619

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 692 PP--PVRRGASASPQgrqSPSPSTRPI--RRVSRTPEPKKIKKAASPSP--------------------------QSVRR 741
Cdd:PTZ00449  620 IPksPKRPESPKSPK---RPPPPQRPSspERPEGPKIIKSPKPPKSPKPpfdpkfkekfyddyldaaaksketktTVVLD 696

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958776680 742 VSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPS 792
Cdd:PTZ00449  697 ESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDI 747
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 557-793 6.36e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 6.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  557 PPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 636
Cdd:PHA03307   128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  637 PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP---SPRPRAPQTSSPPPVRRGASASPQG-RQSPSPS 712
Cdd:PHA03307   208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPeneCPLPRPAPITLPTRIWEASGWNGPSsRPGPASS 287

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  713 TRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPV-------QSQSPSTNWSPAAPAKKAK 785
Cdd:PHA03307   288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVspgpspsRSPSPSRPPPPADPSSPRK 367


                   ....*...
gi 1958776680  786 SPTPSPSP 793
Cdd:PHA03307   368 RPRPSRAP 375
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
604-737 1.02e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 604 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 683
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958776680 684 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 737
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 601-736 1.76e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 42.12  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 601 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRspPVTKRRSPSLSSKHRKGSSpgRSTREARSPQPNKRHSP 680
Cdd:pfam08580 483 STLKQTKRPSKIPRASPNHSGFLSTPSNTATSETPTPALR--PPSRPQPPPPGNRPRWNAS--TNTNDLDVGHNFKPLTL 558

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958776680 681 SPRPRAPQTSSPP--------PVRRGASASPqgrqspSPSTRPIRRVSRTPEPKKIKKAASPSP 736
Cdd:pfam08580 559 TTPSPTPSRSSRSsstlppvsPLSRDKSRSP------APTCRSVSRASRRRASRKPTRIGSPNS 616
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 603-736 3.30e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.00  E-value: 3.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 603 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK-QRSPPVTKRRSPSLSSKHRKgsspgrSTREARSPQPNKRHSPS 681
Cdd:PRK07994  371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApQQAPAVPLPETTSQLLAARQ------QLQRAQGATKAKKSEPA 444

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958776680 682 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 736
Cdd:PRK07994  445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 601-794 5.11e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 5.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  601 SPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSP-- 672
Cdd:PHA03307   219 SPAPAPGRSAADDAGASSSDSSSSESsgcgwgPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPsp 298

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  673 QPNKRHSPS--PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSG 750
Cdd:PHA03307   299 SPSSPGSGPapSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1958776680  751 SPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 794
Cdd:PHA03307   379 AASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAA 422
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 601-712 5.35e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 5.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 601 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 680
Cdd:PRK07764  393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958776680 681 SPRPRAPQTSSPPPVRRGAsASPQGRQSPSPS 712
Cdd:PRK07764  473 APEPTAAPAPAPPAAPAPA-AAPAAPAAPAAP 503
PHA03247 PHA03247
large tegument protein UL36; Provisional
 596-793 6.30e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 6.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  596 IQRRYSPSPPPKRRTASPPPPP--KRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPS-LSSKHRKGSSPGRSTREARSP 672
Cdd:PHA03247   238 VERRVVISHPLRGDIAAPAPPPvvGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgVWGAALAGAPLALPAPPDPPP 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680  673 QPNKRH--------------SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKK-IKKAASPSPQ 737
Cdd:PHA03247   318 PAPAGDaeeeddedgamevvSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRsARHAATPFAR 397

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958776680  738 SVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNwSPAAPAKKAKSPTPSPSP 793
Cdd:PHA03247   398 GPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP-LPSAEPGSDDGPAPPPER 452
Gag_spuma pfam03276
Spumavirus gag protein;
602-710 6.43e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 40.12  E-value: 6.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 602 PSPPPKRRTASPPPPPK-------RRASPSPPPKRRVSHSPPPKQRSPPVTKRRSpslSSKHRKGSSPGRSTREARSPQP 674
Cdd:pfam03276 207 PAIPGIHARAPPGNIARslgddimPSLGDAGMPQPRFAFHPGNPFAEAEGHPFAE---AEGERPRDIPRAPRIDAPSAPA 283

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1958776680 675 NKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPS 710
Cdd:pfam03276 284 IPAIQPIAPPMIPPIGAPIPIPHGASIPGEHIRNPR 319
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
600-802 6.44e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 6.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 600 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTkrrspslsskhrkGSSPGRSTREARSPQPNKRHS 679
Cdd:PRK07003  358 FEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-------------GAAGAALAPKAAAAAAATRAE 424

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 680 PSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKP 759
Cdd:PRK07003  425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1958776680 760 PAPPSPVQSQSPSTNWSPAAPAKKA-KSPTPSPSPARNSDQEGG 802
Cdd:PRK07003  505 AAVPDARAPAAASREDAPAAAAPPApEARPPTPAAAAPAARAGG 548
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 602-718 8.76e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 8.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776680 602 PSPPPKRRTASPPPPPKRRASPsPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 681
Cdd:PRK07764  399 PSAAAAAPAAAPAPAAAAPAAA-AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958776680 682 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 718
Cdd:PRK07764  478 AAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRE 514
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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