NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958775099|ref|XP_038965344|]
View 

BSD domain-containing protein 1 isoform X2 [Rattus norvegicus]

Protein Classification

BSD domain-containing protein( domain architecture ID 10654557)

BSD domain-containing protein similar to Homo sapiens BSD domain-containing protein 1 and synapse-associated protein 1

CATH:  1.10.3970.10
PubMed:  11943536
SCOP:  4001198

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BSD smart00751
domain in transcription factors and synapse-associated proteins;
148-198 7.84e-15

domain in transcription factors and synapse-associated proteins;


:

Pssm-ID: 128990 [Multi-domain]  Cd Length: 51  Bit Score: 68.37  E-value: 7.84e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1958775099  148 SRFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 198
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51
 
Name Accession Description Interval E-value
BSD smart00751
domain in transcription factors and synapse-associated proteins;
148-198 7.84e-15

domain in transcription factors and synapse-associated proteins;


Pssm-ID: 128990 [Multi-domain]  Cd Length: 51  Bit Score: 68.37  E-value: 7.84e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1958775099  148 SRFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 198
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51
BSD pfam03909
BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...
 152-202 5.88e-14

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.


Pssm-ID: 461089  Cd Length: 55  Bit Score: 65.99  E-value: 5.88e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1958775099 152 LEEKKGEISELLVGS-PSIRALYTKMVPAAVSHSEFWHRYFYKVHQLEQEQA 202
Cdd:pfam03909   4 LDEKTEEIAQLLLKEdPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQEEE 55
 
Name Accession Description Interval E-value
BSD smart00751
domain in transcription factors and synapse-associated proteins;
148-198 7.84e-15

domain in transcription factors and synapse-associated proteins;


Pssm-ID: 128990 [Multi-domain]  Cd Length: 51  Bit Score: 68.37  E-value: 7.84e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1958775099  148 SRFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 198
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51
BSD pfam03909
BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...
 152-202 5.88e-14

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.


Pssm-ID: 461089  Cd Length: 55  Bit Score: 65.99  E-value: 5.88e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1958775099 152 LEEKKGEISELLVGS-PSIRALYTKMVPAAVSHSEFWHRYFYKVHQLEQEQA 202
Cdd:pfam03909   4 LDEKTEEIAQLLLKEdPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQEEE 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH