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Conserved domains on  [gi|1958772839|ref|XP_038964672|]
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cilia- and flagella-associated protein 100 isoform X5 [Rattus norvegicus]

Protein Classification

DUF4200 domain-containing protein( domain architecture ID 11227509)

DUF4200 domain-containing protein such as cilia- and flagella-associated protein (CFAP), which is a coiled-coil domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
63-181 1.99e-24

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


:

Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 98.02  E-value: 1.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958772839  63 YMEKKRSMFLLQYALAMKHNEIQRLEMLATREENRLERAEKFLEKDASLFDEFLRENDRNSVQAMRLAEKETKIKTEKIV 142
Cdd:pfam13863   1 LLEKKREMFLVQLALDAKREEIERLEELLKQREEELEKKEQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEK 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958772839 143 EIRELTAQITSIKSEISKFEDTLKHYKIYKDFLYKVSPK 181
Cdd:pfam13863  81 EIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
63-181 1.99e-24

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 98.02  E-value: 1.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958772839  63 YMEKKRSMFLLQYALAMKHNEIQRLEMLATREENRLERAEKFLEKDASLFDEFLRENDRNSVQAMRLAEKETKIKTEKIV 142
Cdd:pfam13863   1 LLEKKREMFLVQLALDAKREEIERLEELLKQREEELEKKEQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEK 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958772839 143 EIRELTAQITSIKSEISKFEDTLKHYKIYKDFLYKVSPK 181
Cdd:pfam13863  81 EIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
 
Name Accession Description Interval E-value
DUF4200 pfam13863
Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil ...
63-181 1.99e-24

Domain of unknown function (DUF4200); This family is found in eukaryotes. It is a coiled-coil domain of unknwon function.


Pssm-ID: 464003 [Multi-domain]  Cd Length: 119  Bit Score: 98.02  E-value: 1.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958772839  63 YMEKKRSMFLLQYALAMKHNEIQRLEMLATREENRLERAEKFLEKDASLFDEFLRENDRNSVQAMRLAEKETKIKTEKIV 142
Cdd:pfam13863   1 LLEKKREMFLVQLALDAKREEIERLEELLKQREEELEKKEQELKEDLIKFDKFLKENDAKRRRALKKAEEETKLKKEKEK 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958772839 143 EIRELTAQITSIKSEISKFEDTLKHYKIYKDFLYKVSPK 181
Cdd:pfam13863  81 EIKKLTAQIEELKSEISKLEEKLEEYKPYEDFLEKVVPK 119
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
18-168 5.87e-03

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 463796 [Multi-domain]  Cd Length: 712  Bit Score: 39.27  E-value: 5.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958772839  18 LQLEDEMEQQQLNAEAEEMNEFRDNNawkMTVTREKKKE---HETLNDYMEKKRSMFLLQYA---LAMKHNE-IQRLEML 90
Cdd:pfam13166 315 LLSAFELDVEDIESEAEVLNSQLDGL---RRALEAKRKDpfkSIELDSVDAKIESINDLVASineLIAKHNEiTDNFEEE 391
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958772839  91 ATREENRLERAEkfLEKDASLFDEFlRENDRNSVQAMRLAEKETKIKTEKIV----EIRELTAQITSIKSEISKFEDTLK 166
Cdd:pfam13166 392 KNKAKKKLRLHL--VEEFKSEIDEY-KDKYAGLEKAINSLEKEIKNLEAEIKklreEIKELEAQLRDHKPGADEINKLLK 468

                  ..
gi 1958772839 167 HY 168
Cdd:pfam13166 469 AF 470
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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