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Conserved domains on  [gi|1958771466|ref|XP_038964281|]
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E3 ubiquitin-protein ligase KCMF1 isoform X1 [Rattus norvegicus]

Protein Classification

zinc finger and BTB domain-containing protein( domain architecture ID 10528896)

C2H2 zinc finger and BTB (BR-C, ttk and bab)/POZ (Pox virus and Zinc finger) domain-containing protein similar to Drosophila melanogaster protein abrupt (also known as clueless) that may be involved in transcriptional regulation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-Di19 pfam05605
Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought ...
 25-86 2.58e-23

Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. This domain is a zinc-binding domain.


:

Pssm-ID: 428539  Cd Length: 54  Bit Score: 90.82  E-value: 2.58e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958771466  25 QSFTCPYCGKmGYTETSLQEHVTSEHAETSTEVICPICAalpggdpNHVTDDFAAHLTLEHR 86
Cdd:pfam05605   1 DEFTCPFCGE-DFDVVSLCEHVEDEHPVESKNVVCPVCA-------AKVGKDMIGHLTLQHG 54
 
Name Accession Description Interval E-value
zf-Di19 pfam05605
Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought ...
 25-86 2.58e-23

Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. This domain is a zinc-binding domain.


Pssm-ID: 428539  Cd Length: 54  Bit Score: 90.82  E-value: 2.58e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958771466  25 QSFTCPYCGKmGYTETSLQEHVTSEHAETSTEVICPICAalpggdpNHVTDDFAAHLTLEHR 86
Cdd:pfam05605   1 DEFTCPFCGE-DFDVVSLCEHVEDEHPVESKNVVCPVCA-------AKVGKDMIGHLTLQHG 54
 
Name Accession Description Interval E-value
zf-Di19 pfam05605
Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought ...
 25-86 2.58e-23

Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. This domain is a zinc-binding domain.


Pssm-ID: 428539  Cd Length: 54  Bit Score: 90.82  E-value: 2.58e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958771466  25 QSFTCPYCGKmGYTETSLQEHVTSEHAETSTEVICPICAalpggdpNHVTDDFAAHLTLEHR 86
Cdd:pfam05605   1 DEFTCPFCGE-DFDVVSLCEHVEDEHPVESKNVVCPVCA-------AKVGKDMIGHLTLQHG 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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