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Conserved domains on  [gi|1958770249|ref|XP_038963792|]
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transmembrane protein 72 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMEM72 super family cl24578
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
34-129 1.84e-40

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


The actual alignment was detected with superfamily member pfam16054:

Pssm-ID: 435102  Cd Length: 154  Bit Score: 137.14  E-value: 1.84e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770249  34 LRFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKEKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITG 113
Cdd:pfam16054  43 LLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCWKFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILG 122
                          90
                  ....*....|....*.
gi 1958770249 114 LAYFLLSKRKKKKAAP 129
Cdd:pfam16054 123 FLYFILSFRKKVSTGP 138
 
Name Accession Description Interval E-value
TMEM72 pfam16054
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
34-129 1.84e-40

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


Pssm-ID: 435102  Cd Length: 154  Bit Score: 137.14  E-value: 1.84e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770249  34 LRFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKEKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITG 113
Cdd:pfam16054  43 LLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCWKFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILG 122
                          90
                  ....*....|....*.
gi 1958770249 114 LAYFLLSKRKKKKAAP 129
Cdd:pfam16054 123 FLYFILSFRKKVSTGP 138
 
Name Accession Description Interval E-value
TMEM72 pfam16054
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
34-129 1.84e-40

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


Pssm-ID: 435102  Cd Length: 154  Bit Score: 137.14  E-value: 1.84e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770249  34 LRFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAKEKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITG 113
Cdd:pfam16054  43 LLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCWKFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILG 122
                          90
                  ....*....|....*.
gi 1958770249 114 LAYFLLSKRKKKKAAP 129
Cdd:pfam16054 123 FLYFILSFRKKVSTGP 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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