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Conserved domains on  [gi|1958764962|ref|XP_038962149|]
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complement C5 isoform X4 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MG1 pfam17790
Macroglobulin domain MG1; This entry represents the N-terminal macroglobulin domain found in ...
 32-128 1.15e-19

Macroglobulin domain MG1; This entry represents the N-terminal macroglobulin domain found in complement proteins C3, C4 and C5.


:

Pssm-ID: 465508  Cd Length: 101  Bit Score: 80.08  E-value: 1.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764962  32 YIISTPIVFRVGAPENVTVQAYGYTEAFDTTISVKSYPNKNVNYSSGTVELSPENKFQNSAILTIQAQELSEEQNWFSNV 111
Cdd:pfam17790   4 YLLTAPNVLRVESEENIVVEAHGYTAPVEVTITVMDFPDKKALLASTSVTLNSDNNYQALVTIKIPAKLFRKDRKGKQYV 83

                          90
                  ....*....|....*..
gi 1958764962 112 YSEVVSKHFSKLEIMPI 128
Cdd:pfam17790  84 YLQAKFPHFELEKVVLV 100
MG2 super family cl47206
MG2 domain; This is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes. ...
 134-169 1.18e-03

MG2 domain; This is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes. Alpha-2-macroglobulins (A2Ms) are plasma proteins that trap and inhibit a broad range of proteases and are major components of the eukaryotic innate immune system. However, A2M-like proteins were identified in pathogenically invasive bacteria and species that colonize higher eukaryotes. This domain is found in eukaryotic and bacterial proteins. In human A2Ms, this domain is termed macroglobulin-like (MG) domain 2 and in Salmonella enterica ser A2Ms, this is domain 4.


The actual alignment was detected with superfamily member pfam01835:

Pssm-ID: 426464 [Multi-domain]  Cd Length: 95  Bit Score: 36.91  E-value: 1.18e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958764962 134 SLFVHTDKPVYTPEQPVKVAVYSVDDDLEPVTRTTV 169
Cdd:pfam01835   1 RAFVYTDRGIYRPGETVHFKGLLRDQDLRPLAGLPV 36
 
Name Accession Description Interval E-value
MG1 pfam17790
Macroglobulin domain MG1; This entry represents the N-terminal macroglobulin domain found in ...
 32-128 1.15e-19

Macroglobulin domain MG1; This entry represents the N-terminal macroglobulin domain found in complement proteins C3, C4 and C5.


Pssm-ID: 465508  Cd Length: 101  Bit Score: 80.08  E-value: 1.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764962  32 YIISTPIVFRVGAPENVTVQAYGYTEAFDTTISVKSYPNKNVNYSSGTVELSPENKFQNSAILTIQAQELSEEQNWFSNV 111
Cdd:pfam17790   4 YLLTAPNVLRVESEENIVVEAHGYTAPVEVTITVMDFPDKKALLASTSVTLNSDNNYQALVTIKIPAKLFRKDRKGKQYV 83

                          90
                  ....*....|....*..
gi 1958764962 112 YSEVVSKHFSKLEIMPI 128
Cdd:pfam17790  84 YLQAKFPHFELEKVVLV 100
MG2 pfam01835
MG2 domain; This is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes. ...
 134-169 1.18e-03

MG2 domain; This is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes. Alpha-2-macroglobulins (A2Ms) are plasma proteins that trap and inhibit a broad range of proteases and are major components of the eukaryotic innate immune system. However, A2M-like proteins were identified in pathogenically invasive bacteria and species that colonize higher eukaryotes. This domain is found in eukaryotic and bacterial proteins. In human A2Ms, this domain is termed macroglobulin-like (MG) domain 2 and in Salmonella enterica ser A2Ms, this is domain 4.


Pssm-ID: 426464 [Multi-domain]  Cd Length: 95  Bit Score: 36.91  E-value: 1.18e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958764962 134 SLFVHTDKPVYTPEQPVKVAVYSVDDDLEPVTRTTV 169
Cdd:pfam01835   1 RAFVYTDRGIYRPGETVHFKGLLRDQDLRPLAGLPV 36
 
Name Accession Description Interval E-value
MG1 pfam17790
Macroglobulin domain MG1; This entry represents the N-terminal macroglobulin domain found in ...
 32-128 1.15e-19

Macroglobulin domain MG1; This entry represents the N-terminal macroglobulin domain found in complement proteins C3, C4 and C5.


Pssm-ID: 465508  Cd Length: 101  Bit Score: 80.08  E-value: 1.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764962  32 YIISTPIVFRVGAPENVTVQAYGYTEAFDTTISVKSYPNKNVNYSSGTVELSPENKFQNSAILTIQAQELSEEQNWFSNV 111
Cdd:pfam17790   4 YLLTAPNVLRVESEENIVVEAHGYTAPVEVTITVMDFPDKKALLASTSVTLNSDNNYQALVTIKIPAKLFRKDRKGKQYV 83

                          90
                  ....*....|....*..
gi 1958764962 112 YSEVVSKHFSKLEIMPI 128
Cdd:pfam17790  84 YLQAKFPHFELEKVVLV 100
MG2 pfam01835
MG2 domain; This is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes. ...
 134-169 1.18e-03

MG2 domain; This is the MG2 (macroglobulin) domain of alpha-2-macroglobulin in eukaryotes. Alpha-2-macroglobulins (A2Ms) are plasma proteins that trap and inhibit a broad range of proteases and are major components of the eukaryotic innate immune system. However, A2M-like proteins were identified in pathogenically invasive bacteria and species that colonize higher eukaryotes. This domain is found in eukaryotic and bacterial proteins. In human A2Ms, this domain is termed macroglobulin-like (MG) domain 2 and in Salmonella enterica ser A2Ms, this is domain 4.


Pssm-ID: 426464 [Multi-domain]  Cd Length: 95  Bit Score: 36.91  E-value: 1.18e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958764962 134 SLFVHTDKPVYTPEQPVKVAVYSVDDDLEPVTRTTV 169
Cdd:pfam01835   1 RAFVYTDRGIYRPGETVHFKGLLRDQDLRPLAGLPV 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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