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Conserved domains on  [gi|1958762786|ref|XP_038961295|]
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general transcription factor 3C polypeptide 5 isoform X2 [Rattus norvegicus]

Protein Classification

TFIIIC subunit 5 family protein( domain architecture ID 10560826)

TFIIIC subunit 5 family protein similar to Homo sapiens general transcription factor 3C polypeptide 5 (GTF3C5) involved in RNA polymerase III-mediated transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tau95 pfam09734
RNA polymerase III transcription factor (TF)IIIC subunit HTH domain; TFIIIC1 is a multisubunit ...
 43-197 3.97e-61

RNA polymerase III transcription factor (TF)IIIC subunit HTH domain; TFIIIC1 is a multisubunit DNA binding factor that serves as a dynamic platform for assembly of pre-initiation complexes on class III genes. This entry represents the tau 95 subunit which holds a key position in TFIIIC, exerting both upstream and downstream influence on the TFIIIC-DNA complex by rendering the complex more stable. Once bound to tDNA-intragenic promoter elements, TFIIIC directs the assembly of TFIIIB on the DNA, which in turn recruits the RNA polymerase III (pol III) and activates multiple rounds of transcription.


:

Pssm-ID: 462865  Cd Length: 151  Bit Score: 194.04  E-value: 3.97e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958762786  43 IPPPIFSRLDTPVDYFYRPETQHREGYHnpsiSGENLIGLSRARRPHNAIFVNFEDTE-VPEQPLEAAVQTWKKactNPI 121
Cdd:pfam09734   2 LPPPLFSRIDLPFNYNYRQNPAVKVVKE----SGELRLVNTRKSRKLHTIFVNFDDEEpVPTEPPPELLKELKS---KPI 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958762786 122 DQKVEEELRKLFDIRPIWSRNAVKSNVSVHPDK-LKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFR 197
Cdd:pfam09734  75 LQRAIEELKKLFEERPIWTRRALLNRLPKKGRHlLKQALPYVAYYFKSGPWRDTWVRFGYDPRKDPEYRIYQTLDFR 151
 
Name Accession Description Interval E-value
Tau95 pfam09734
RNA polymerase III transcription factor (TF)IIIC subunit HTH domain; TFIIIC1 is a multisubunit ...
 43-197 3.97e-61

RNA polymerase III transcription factor (TF)IIIC subunit HTH domain; TFIIIC1 is a multisubunit DNA binding factor that serves as a dynamic platform for assembly of pre-initiation complexes on class III genes. This entry represents the tau 95 subunit which holds a key position in TFIIIC, exerting both upstream and downstream influence on the TFIIIC-DNA complex by rendering the complex more stable. Once bound to tDNA-intragenic promoter elements, TFIIIC directs the assembly of TFIIIB on the DNA, which in turn recruits the RNA polymerase III (pol III) and activates multiple rounds of transcription.


Pssm-ID: 462865  Cd Length: 151  Bit Score: 194.04  E-value: 3.97e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958762786  43 IPPPIFSRLDTPVDYFYRPETQHREGYHnpsiSGENLIGLSRARRPHNAIFVNFEDTE-VPEQPLEAAVQTWKKactNPI 121
Cdd:pfam09734   2 LPPPLFSRIDLPFNYNYRQNPAVKVVKE----SGELRLVNTRKSRKLHTIFVNFDDEEpVPTEPPPELLKELKS---KPI 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958762786 122 DQKVEEELRKLFDIRPIWSRNAVKSNVSVHPDK-LKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFR 197
Cdd:pfam09734  75 LQRAIEELKKLFEERPIWTRRALLNRLPKKGRHlLKQALPYVAYYFKSGPWRDTWVRFGYDPRKDPEYRIYQTLDFR 151
 
Name Accession Description Interval E-value
Tau95 pfam09734
RNA polymerase III transcription factor (TF)IIIC subunit HTH domain; TFIIIC1 is a multisubunit ...
 43-197 3.97e-61

RNA polymerase III transcription factor (TF)IIIC subunit HTH domain; TFIIIC1 is a multisubunit DNA binding factor that serves as a dynamic platform for assembly of pre-initiation complexes on class III genes. This entry represents the tau 95 subunit which holds a key position in TFIIIC, exerting both upstream and downstream influence on the TFIIIC-DNA complex by rendering the complex more stable. Once bound to tDNA-intragenic promoter elements, TFIIIC directs the assembly of TFIIIB on the DNA, which in turn recruits the RNA polymerase III (pol III) and activates multiple rounds of transcription.


Pssm-ID: 462865  Cd Length: 151  Bit Score: 194.04  E-value: 3.97e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958762786  43 IPPPIFSRLDTPVDYFYRPETQHREGYHnpsiSGENLIGLSRARRPHNAIFVNFEDTE-VPEQPLEAAVQTWKKactNPI 121
Cdd:pfam09734   2 LPPPLFSRIDLPFNYNYRQNPAVKVVKE----SGELRLVNTRKSRKLHTIFVNFDDEEpVPTEPPPELLKELKS---KPI 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958762786 122 DQKVEEELRKLFDIRPIWSRNAVKSNVSVHPDK-LKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFR 197
Cdd:pfam09734  75 LQRAIEELKKLFEERPIWTRRALLNRLPKKGRHlLKQALPYVAYYFKSGPWRDTWVRFGYDPRKDPEYRIYQTLDFR 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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