NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958751669|ref|XP_038958640|]
View 

G-protein-signaling modulator 2 isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-316 3.30e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.37  E-value: 3.30e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  46 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 125
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 126 LYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 206 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEY 285
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1958751669 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 471-493 1.18e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.18  E-value: 1.18e-06
                           10        20
                   ....*....|....*....|...
gi 1958751669  471 DEGFFDLLRRLQSSRMEDQRCHL 493
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 574-596 1.34e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.80  E-value: 1.34e-06
                           10        20
                   ....*....|....*....|...
gi 1958751669  574 DEDFFDILVKCQGSRLDDQRCAP 596
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
609-630 6.69e-06

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 6.69e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 609 EDFFSLILRSQAKRMDEQRVLL 630
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
524-545 8.30e-06

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 8.30e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 524 DEFLDLLASSQSRRLDDQRASF 545
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_7 pfam13176
Tetratricopeptide repeat;
305-340 4.05e-03

Tetratricopeptide repeat;


:

Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 4.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958751669 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 340
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-316 3.30e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.37  E-value: 3.30e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  46 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 125
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 126 LYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 206 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEY 285
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1958751669 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR_12 pfam13424
Tetratricopeptide repeat;
224-295 1.48e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 1.48e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958751669 224 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 295
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 471-493 1.18e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.18  E-value: 1.18e-06
                           10        20
                   ....*....|....*....|...
gi 1958751669  471 DEGFFDLLRRLQSSRMEDQRCHL 493
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 574-596 1.34e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.80  E-value: 1.34e-06
                           10        20
                   ....*....|....*....|...
gi 1958751669  574 DEDFFDILVKCQGSRLDDQRCAP 596
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
575-594 2.33e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 44.33  E-value: 2.33e-06
                          10        20
                  ....*....|....*....|
gi 1958751669 575 EDFFDILVKCQGSRLDDQRC 594
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
GoLoco pfam02188
GoLoco motif;
472-493 2.49e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.95  E-value: 2.49e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 472 EGFFDLLRRLQSSRMEDQRCHL 493
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
609-630 6.69e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 6.69e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 609 EDFFSLILRSQAKRMDEQRVLL 630
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
524-545 8.30e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 8.30e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 524 DEFLDLLASSQSRRLDDQRASF 545
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 608-630 1.48e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 42.10  E-value: 1.48e-05
                           10        20
                   ....*....|....*....|...
gi 1958751669  608 DEDFFSLILRSQAKRMDEQRVLL 630
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 69-357 2.40e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.61  E-value: 2.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  69 DLTLARTIGDQLGEA-------------KASGNLGNTLKVLGNFDEAivccqrhldisRELNDKV-GEARALYNLGNVYH 134
Cdd:NF040586  407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 135 ----AKGkSFGcpgpQD---VGEFPEevrlalqaAVELYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 205
Cdd:NF040586  476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 206 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYRKTLLLA------RQLKDRAVeaqSCYSLG 270
Cdd:NF040586  543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 271 ntytllqDYEKAIEyhlKHLAIAQELKDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksGE--- 342
Cdd:NF040586  620 -------RLEEALE---LAEDTYERYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---GEdhp 686

                         330
                  ....*....|....*..
gi 1958751669 343 --LTARLNLSDLQMVLG 357
Cdd:NF040586  687 ftLACRNNLAVLLRALG 703
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 93-357 4.07e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 46.84  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  93 LKVLGNFDEAIVCCQRHLDISRELNDKVGE--ARALYNLGNVYHAKGKsfgcpgPQDVGEFPEEVrLALQAAVELYEEN- 169
Cdd:NF040586  402 LYLRGDYESARDLAERALERWRERLGPDDRqtLRLRFHLANALRSLGR------YEEARELDEDT-LERQRRVLGLGEDh 474

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 170 -LSLVTALGdRAAQGRAfgnlgnthylLGNFRDAVIAHEQRLLIAKE-FGDKAAE-RRAYSNLGNAYIFLGEFETASEYY 246
Cdd:NF040586  475 pHTLMTAGG-LGADLRA----------LGRFREALELDEETLERHRRvFGEDHPRtLRAANNLAVSLRLLGDYREALELD 543

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 247 RKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAI-------EYHLKHLAIAqelkDRIGEGRACWSLGNAYTALG 317
Cdd:NF040586  544 REVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALdlleealERYREVLGGP----DHPDTLRAAKSLAVALRRAG 619

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1958751669 318 NHDQAMHFAEKHLEISREV-GDKSGE-LTARLNLSDLQMVLG 357
Cdd:NF040586  620 RLEEALELAEDTYERYRRRfGPDHPDtLAAALSLANDLRALG 661
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 523-545 4.74e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.56  E-value: 4.74e-05
                           10        20
                   ....*....|....*....|...
gi 1958751669  523 TDEFLDLLASSQSRRLDDQRASF 545
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 263-295 3.59e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 3.59e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1958751669  263 AQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 295
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
305-340 4.05e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 4.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958751669 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 340
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-316 3.30e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.37  E-value: 3.30e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  46 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARA 125
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 126 LYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 206 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEY 285
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1958751669 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
82-349 2.56e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 85.06  E-value: 2.56e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQA 161
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGR--------------------YEE 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 162 AVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFET 241
Cdd:COG0457    61 ALADYEQ------ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDE 128

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 242 ASEYYRKTLLLARQLkdraveAQSCYSLGNTYTLLQDYEKAIEYHLKhlAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321
Cdd:COG0457   129 AIEAYERALELDPDD------ADALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALL 200

                         250       260
                  ....*....|....*....|....*...
gi 1958751669 322 AMHFAEKHLEISREVGDKSGELTARLNL 349
Cdd:COG0457   201 LALEQALRKKLAILTLAALAELLLLALA 228
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 48-332 5.43e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.84  E-value: 5.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  48 QLGNAYFYLHDYAKALEYhhhdltLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALY 127
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDL------LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 128 NLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207
Cdd:COG2956    81 ELAQDYLKAGL--------------------LDRAEELLEK------LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 208 QrllIAKEFGDKAaerRAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHL 287
Cdd:COG2956   135 R---LLKLGPENA---HAYCELAELYLEQGDYDEAIEALEK----ALKLDPDCARAL--LLLAELYLEQGDYEEAIAALE 202

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1958751669 288 KHLAIAQELKDRIGEgracwsLGNAYTALGNHDQAMHFAEKHLEI 332
Cdd:COG2956   203 RALEQDPDYLPALPR------LAELYEKLGDPEEALELLRKALEL 241
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 37-255 2.98e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.56  E-value: 2.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  37 EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIsrel 116
Cdd:COG3914    72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALAL---- 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 117 ndKVGEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLslvtalgdraaqgRAFGNLGNTHYLL 196
Cdd:COG3914   142 --NPDFAEAYLNLGEALRRLGR-------------LEEAIAALRRALELDPDNA-------------EALNNLGNALQDL 193

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958751669 197 GNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 255
Cdd:COG3914   194 GRLEEAIAAYRRALELDPDN------ADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 159-357 6.79e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 6.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 159 LQAAVELYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGE 238
Cdd:COG2956    24 PDKAIDLLEE------ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 239 FETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEGRACWSLGNAYTALGN 318
Cdd:COG2956    92 LDRAEELLEK----LLELDPDDAEAL--RLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGD 159

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958751669 319 HDQAMHFAEKHLEISREvgdksgELTARLNLSDLQMVLG 357
Cdd:COG2956   160 YDEAIEALEKALKLDPD------CARALLLLAELYLEQG 192
COG3899 COG3899
Predicted ATPase [General function prediction only];
156-310 8.84e-11

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 65.26  E-value: 8.84e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  156 RLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Cdd:COG3899    718 RGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFeeaeallERALAARALAALAALRHGNPPASARAYAN 797

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  229 LGnaYIFLGEFETASEYYRKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDRIGEGRACWS 308
Cdd:COG3899    798 LG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAA 875


                   ..
gi 1958751669  309 LG 310
Cdd:COG3899    876 AA 877
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 10-331 9.37e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.21  E-value: 9.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTlsaiYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNL 89
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA----HLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLEL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  90 GNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEEn 169
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGD--------------------WEKAIEVLER- 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 170 lslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYRKT 249
Cdd:COG2956   136 -----LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERA 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 250 LllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDRIgegracwSLGNAYTALGNHDQAMHFAEKH 329
Cdd:COG2956   205 L----EQDPDYLPAL--PRLAELYEKLGDPEEALELLRKALELDPSDDLLL-------ALADLLERKEGLEAALALLERQ 271


                  ..
gi 1958751669 330 LE 331
Cdd:COG2956   272 LR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 156-332 2.10e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 2.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 156 RLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIF 235
Cdd:COG3914    51 LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 236 LGEFETASEYYRKtlllARQLKDRAVEAqsCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELkdrigeGRACWSLGNAYTA 315
Cdd:COG3914   125 LGRLEEALAALRR----ALALNPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQD 192

                         170
                  ....*....|....*..
gi 1958751669 316 LGNHDQAMHFAEKHLEI 332
Cdd:COG3914   193 LGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 152-357 3.81e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 3.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 152 PEEVRLALQAAVELYEENLSlvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231
Cdd:COG3914    10 AALAAAALLAAAAAAELALA---AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 232 AYIFLGEFETASEYYRKTLLLARQlkdravEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELkdrigeGRACWSLGN 311
Cdd:COG3914    87 LLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGE 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1958751669 312 AYTALGNHDQAMHFAEKHLEIsrevgdKSGELTARLNLSDLQMVLG 357
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALEL------DPDNAEALNNLGNALQDLG 194
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 152-293 7.78e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 7.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 152 PEEVRLALQAAVELYEENLSlvtalgdraaqgrAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGN 231
Cdd:COG3914    94 YEEALALYRRALALNPDNAE-------------ALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGE 154

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958751669 232 AYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIA 293
Cdd:COG3914   155 ALRRLGRLEEAIAALRR----ALELDPDNAEAL--NNLGNALQDLGRLEEAIAAYRRALELD 210
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 180-333 1.42e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 1.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDR 259
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE------AFALLGEILLQLGDLDEAIVLLHE----ALELDPD 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958751669 260 AVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG4783    71 EPEAR--LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_12 pfam13424
Tetratricopeptide repeat;
224-295 1.48e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 1.48e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958751669 224 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 295
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
267-335 5.81e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.08  E-value: 5.81e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958751669 267 YSLGNTYTLLQDYEKAIEYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
12-226 3.93e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 3.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  12 GERLCKSGDCRAGVSFFEAAVQVGTEDlktlSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdqlgEAKASGNLGN 91
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  92 TLKVLGNFDEAIVCCQRHLDISRELndkvgeARALYNLGNVYHAKGKSfgcPGPQDVGEFPEEVRLALQAAVELYEENLS 171
Cdd:COG0457   119 ALLELGRYDEAIEAYERALELDPDD------ADALYNLGIALEKLGRY---EEALELLEKLEAAALAALLAAALGEAALA 189

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958751669 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 121-295 9.33e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 9.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 121 GEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLslvtalgdraaqgRAFGNLGNTHYLLGNFR 200
Cdd:COG4783     2 ACAEALYALAQALLLAGD-------------YDEAEALLEKALELDPDNP-------------EAFALLGEILLQLGDLD 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 201 DAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGEFETASEYYRKTLLLARQlkdravEAQSCYSLGNTYTLLQDYE 280
Cdd:COG4783    56 EAIVLLHEALELDPD------EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPD 123

                         170
                  ....*....|....*
gi 1958751669 281 KAIEYHLKHLAIAQE 295
Cdd:COG4783   124 EAIAALEKALELDPD 138
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 471-493 1.18e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.18  E-value: 1.18e-06
                           10        20
                   ....*....|....*....|...
gi 1958751669  471 DEGFFDLLRRLQSSRMEDQRCHL 493
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 171-285 1.33e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRKtl 250
Cdd:COG4235     5 RLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLER-- 76

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958751669 251 llARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEY 285
Cdd:COG4235    77 --ALALDPDNPEAL--YLLGLAAFQQGDYAEAIAA 107
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 574-596 1.34e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.80  E-value: 1.34e-06
                           10        20
                   ....*....|....*....|...
gi 1958751669  574 DEDFFDILVKCQGSRLDDQRCAP 596
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR_12 pfam13424
Tetratricopeptide repeat;
184-255 1.62e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 1.62e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958751669 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 255
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 146-293 2.13e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 2.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 146 QDVGEFPEEVRLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrA 225
Cdd:COG5010    17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE------L 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958751669 226 YSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIA 293
Cdd:COG5010    91 YYNLALLYSRSGDKDEAKEYYEK----ALALSPDNPNAY--SNLAALLLSLGQDDEAKAALQRALGTS 152
GoLoco pfam02188
GoLoco motif;
575-594 2.33e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 44.33  E-value: 2.33e-06
                          10        20
                  ....*....|....*....|
gi 1958751669 575 EDFFDILVKCQGSRLDDQRC 594
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
GoLoco pfam02188
GoLoco motif;
472-493 2.49e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.95  E-value: 2.49e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 472 EGFFDLLRRLQSSRMEDQRCHL 493
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_12 pfam13424
Tetratricopeptide repeat;
83-168 3.61e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 3.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQ 160
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGR-------------YEEALELLE 69


                  ....*...
gi 1958751669 161 AAVELYEE 168
Cdd:pfam13424  70 RALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-169 4.18e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 4.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669   7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLktlsAIYSQLGNAYFYLHDYAKALEYHHHDLTLARtigdqlGEAKAS 86
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEAR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  87 GNLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELY 166
Cdd:COG4783    76 LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGR-------------PDEAIAALEKALELD 136


                  ...
gi 1958751669 167 EEN 169
Cdd:COG4783   137 PDD 139
COG3899 COG3899
Predicted ATPase [General function prediction only];
59-322 6.37e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.47  E-value: 6.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669   59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYhakgk 138
Cdd:COG3899    728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL----- 802

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  139 sfgcpgpqdvgefpeevRLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218
Cdd:COG3899    803 -----------------LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  219 KAAERRAYSNLGNAYIFLGEFETASEYYRKTLLLAR------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKHLAI 292
Cdd:COG3899    866 AALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945

                          250       260       270
                   ....*....|....*....|....*....|
gi 1958751669  293 AQELKDRIGEGRACWSLGNAYTALGNHDQA 322
Cdd:COG3899    946 AAAAAAAALAAALALAAAAAAAAAAALAAA 975
GoLoco pfam02188
GoLoco motif;
609-630 6.69e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 6.69e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 609 EDFFSLILRSQAKRMDEQRVLL 630
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_12 pfam13424
Tetratricopeptide repeat;
42-115 7.24e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.30  E-value: 7.24e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958751669  42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco pfam02188
GoLoco motif;
524-545 8.30e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.79  E-value: 8.30e-06
                          10        20
                  ....*....|....*....|..
gi 1958751669 524 DEFLDLLASSQSRRLDDQRASF 545
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
122-305 1.10e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.22  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 122 EARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEenlslvTALGDRAAQGRAFGNLGNTHYLLGNFRD 201
Cdd:COG4785    72 LAQLYYERGVAYDSLGD--------------------YDLAIADFD------QALELDPDLAEAYNNRGLAYLLLGDYDA 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 202 AVIAheqrlliakeFgDKAAERR-----AYSNLGNAYIFLGEFETASEYYRKTLLLARQLKDRAVEAQSCYslgntytLL 276
Cdd:COG4785   126 ALED----------F-DRALELDpdyayAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAE-------RK 187

                         170       180
                  ....*....|....*....|....*....
gi 1958751669 277 QDYEKAIEYHLKHLAIAQELKDRIGEGRA 305
Cdd:COG4785   188 LDPEKALALLLEDWATAYLLQGDTEEARE 216
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-333 1.19e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 1.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 224 RAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEG 303
Cdd:COG4235    18 EGWLLLGRAYLRLGRYDEALAAYEK----ALRLDPDNADAL--LDLAEALLAAGDTEEAEELLERALALDPD------NP 85

                          90       100       110
                  ....*....|....*....|....*....|
gi 1958751669 304 RACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 608-630 1.48e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 42.10  E-value: 1.48e-05
                           10        20
                   ....*....|....*....|...
gi 1958751669  608 DEDFFSLILRSQAKRMDEQRVLL 630
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 69-357 2.40e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.61  E-value: 2.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  69 DLTLARTIGDQLGEA-------------KASGNLGNTLKVLGNFDEAivccqrhldisRELNDKV-GEARALYNLGNVYH 134
Cdd:NF040586  407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 135 ----AKGkSFGcpgpQD---VGEFPEevrlalqaAVELYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 205
Cdd:NF040586  476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 206 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYRKTLLLA------RQLKDRAVeaqSCYSLG 270
Cdd:NF040586  543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 271 ntytllqDYEKAIEyhlKHLAIAQELKDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksGE--- 342
Cdd:NF040586  620 -------RLEEALE---LAEDTYERYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---GEdhp 686

                         330
                  ....*....|....*..
gi 1958751669 343 --LTARLNLSDLQMVLG 357
Cdd:NF040586  687 ftLACRNNLAVLLRALG 703
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
232-335 3.15e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 3.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 232 AYIFLGEFETASEYYRKTLLLARQlkdravEAQSCYSLGNTYTLLQDYEKAIEYHlKHLAIAQElkdrigEGRACWSLGN 311
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-KALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 1958751669 312 AYTALGNHDQAMHFAEKHLEISRE 335
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
154-333 3.29e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 3.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 154 EVRLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAaerRAYSNLGNAY 233
Cdd:COG4785     7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA---QLYYERGVAY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 234 IFLGEFETAseyyRKTLLLARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYhlkhLAIAQELKDRIGEgrACWSLGNAY 313
Cdd:COG4785    84 DSLGDYDLA----IADFDQALELDPDLAEAY--NNRGLAYLLLGDYDAALED----FDRALELDPDYAY--AYLNRGIAL 151

                         170       180
                  ....*....|....*....|
gi 1958751669 314 TALGNHDQAMHFAEKHLEIS 333
Cdd:COG4785   152 YYLGRYELAIADLEKALELD 171
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 229-333 3.97e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 3.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 229 LGNAYIFLGEFETASEYYRKTLllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdrigEGRACWS 308
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEAL----ELDPETVEAH--LALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                          90       100
                  ....*....|....*....|....*
gi 1958751669 309 LGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELD 106
TPR_7 pfam13176
Tetratricopeptide repeat;
265-299 3.99e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.99  E-value: 3.99e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1958751669 265 SCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDR 299
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 93-357 4.07e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 46.84  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  93 LKVLGNFDEAIVCCQRHLDISRELNDKVGE--ARALYNLGNVYHAKGKsfgcpgPQDVGEFPEEVrLALQAAVELYEEN- 169
Cdd:NF040586  402 LYLRGDYESARDLAERALERWRERLGPDDRqtLRLRFHLANALRSLGR------YEEARELDEDT-LERQRRVLGLGEDh 474

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 170 -LSLVTALGdRAAQGRAfgnlgnthylLGNFRDAVIAHEQRLLIAKE-FGDKAAE-RRAYSNLGNAYIFLGEFETASEYY 246
Cdd:NF040586  475 pHTLMTAGG-LGADLRA----------LGRFREALELDEETLERHRRvFGEDHPRtLRAANNLAVSLRLLGDYREALELD 543

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 247 RKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAI-------EYHLKHLAIAqelkDRIGEGRACWSLGNAYTALG 317
Cdd:NF040586  544 REVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALdlleealERYREVLGGP----DHPDTLRAAKSLAVALRRAG 619

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1958751669 318 NHDQAMHFAEKHLEISREV-GDKSGE-LTARLNLSDLQMVLG 357
Cdd:NF040586  620 RLEEALELAEDTYERYRRRfGPDHPDtLAAALSLANDLRALG 661
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 523-545 4.74e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.56  E-value: 4.74e-05
                           10        20
                   ....*....|....*....|...
gi 1958751669  523 TDEFLDLLASSQSRRLDDQRASF 545
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR_12 pfam13424
Tetratricopeptide repeat;
123-215 1.10e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.83  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 123 ARALYNLGNVYHAKGKsfgcpgpqdvgefpeevrlaLQAAVELYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR 200
Cdd:pfam13424   3 ATALNNLAAVLRRLGR--------------------YDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYE 62

                          90
                  ....*....|....*
gi 1958751669 201 DAVIAHEQRLLIAKE 215
Cdd:pfam13424  63 EALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 220-357 1.15e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 1.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 220 AAERRAYSNLGNAYIFLGEFETASEYYRKtlllARQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQElkdr 299
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEK----ALELDPDNPEAF--ALLGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958751669 300 igEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDksgeltARLNLSDLQMVLG 357
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALG 120
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
153-299 1.49e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 153 EEVRLALQAAVELYEENLSLVTALGDRAaqgRAFGNLGNTHYLLGNFRDAVIAHEQRLliaKEFGDKAaerRAYSNLGNA 232
Cdd:COG4785    46 LALAAAALAAAALAAERIDRALALPDLA---QLYYERGVAYDSLGDYDLAIADFDQAL---ELDPDLA---EAYNNRGLA 116

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958751669 233 YIFLGEFETASEYYRKTLllarQLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDR 299
Cdd:COG4785   117 YLLLGDYDAALEDFDRAL----ELDPDYAYAY--LNRGIALYYLGRYELAIADLEKALELDPNDPER 177
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 160-248 2.39e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 2.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 160 QAAVELYEEnlsLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEF 239
Cdd:COG1729    10 DEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDY 83


                  ....*....
gi 1958751669 240 ETASEYYRK 248
Cdd:COG1729    84 DKARATLEE 92
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 193-285 2.48e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 193 HYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKtllLARQLKDRAVEAQSCYSLGNT 272
Cdd:COG1729     3 LLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLS 76

                          90
                  ....*....|...
gi 1958751669 273 YTLLQDYEKAIEY 285
Cdd:COG1729    77 YLELGDYDKARAT 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 175-333 2.73e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 2.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKtlllAR 254
Cdd:COG5010     6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----AL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958751669 255 QLKDRAVEAQscYSLGNTYTLLQDYEKAIEYHLKHLAIAQelkdriGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG5010    82 QLDPNNPELY--YNLALLYSRSGDKDEAKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 232-322 3.42e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 232 AYIFLGEFETASEYYRKtllLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIEYHLKhlaIAQELKDRIGEGRACWSLGN 311
Cdd:COG1729     2 ALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGL 75

                          90
                  ....*....|.
gi 1958751669 312 AYTALGNHDQA 322
Cdd:COG1729    76 SYLELGDYDKA 86
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 263-295 3.59e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 3.59e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1958751669  263 AQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 295
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
224-255 4.36e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 4.36e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958751669 224 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 255
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 224-255 7.35e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 7.35e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958751669  224 RAYSNLGNAYIFLGEFETASEYYRKTLLLARQ 255
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
83-112 7.48e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 7.48e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1958751669  83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 83-115 1.25e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.66  E-value: 1.25e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1958751669   83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 88-211 1.31e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  88 NLGNTLKVLGNFDEAIVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYE 167
Cdd:COG4235    22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGD-------------TEEAEELLERALALDP 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1958751669 168 ENLslvtalgdraaqgRAFGNLGNTHYLLGNFRDAvIAHEQRLL 211
Cdd:COG4235    83 DNP-------------EALYLLGLAAFQQGDYAEA-IAAWQKLL 112
COG3899 COG3899
Predicted ATPase [General function prediction only];
6-264 1.45e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.15  E-value: 1.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669    6 LELALE-GERLCKSGDCRAGVSFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77
Cdd:COG3899    745 LALLLElAEALYLAGRFEEAEALLERALAARAlaalaalRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLG 824

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669   78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYnlgnvyhakgksfgcpgpqdvGEFPEEVRL 157
Cdd:COG3899    825 DRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA---------------------AAAAAAAAA 883

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  158 ALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237
Cdd:COG3899    884 AALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAA 963

                          250       260
                   ....*....|....*....|....*..
gi 1958751669  238 EFETASEYYRKTLLLARQLKDRAVEAQ 264
Cdd:COG3899    964 AAAAAAAALAAAAAAAAAAAAAAAAAA 990
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 123-250 1.53e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 123 ARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLSlvtalgdraaqgrAFGNLGNTHYLLGNFRDA 202
Cdd:COG4235    17 AEGWLLLGRAYLRLGR-------------YDEALAAYEKALRLDPDNAD-------------ALLDLAEALLAAGDTEEA 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1958751669 203 VIAHEQRLLIAKEFGdkaaerRAYSNLGNAYIFLGEFETASEYYRKTL 250
Cdd:COG4235    71 EELLERALALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLL 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 38-214 1.59e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  38 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREln 117
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 118 dkvgEARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENLslvtalgdraaqgRAFGNLGNTHYLLG 197
Cdd:COG5010    87 ----NPELYYNLALLYSRSGD-------------KDEAKEYYEKALALSPDNP-------------NAYSNLAALLLSLG 136

                         170
                  ....*....|....*..
gi 1958751669 198 NFRDAVIAHEQRLLIAK 214
Cdd:COG5010   137 QDDEAKAALQRALGTSP 153
TPR_7 pfam13176
Tetratricopeptide repeat;
225-260 2.31e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.98  E-value: 2.31e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958751669 225 AYSNLGNAYIFLGEFETASEYYRKTLLLARQLKDRA 260
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_1 pfam00515
Tetratricopeptide repeat;
263-295 2.53e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 2.53e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958751669 263 AQSCYSLGNTYTLLQDYEKAIEYHLKHLAIAQE 295
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_11 pfam13414
TPR repeat;
90-137 3.75e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 3.75e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1958751669  90 GNTLKVLGNFDEAIVCCQRHLDISRELndkvgeARALYNLGNVYHAKG 137
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDN------PEAYYNLGLAYYKLG 42
TPR_7 pfam13176
Tetratricopeptide repeat;
305-340 4.05e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 4.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958751669 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 340
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
42-250 5.30e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.74  E-value: 5.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669  42 LSAIYSQLGNAYFYLHDYAKALEyhhhDLTLArtIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLdisrELNDKvg 121
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIA----DFDQA--LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL----ELDPD-- 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 122 EARALYNLGNVYHAKGKsfgcpgpqdvgefPEEVRLALQAAVELYEENlslvtalgdraaqgrafgnlgnthyllgnfrd 201
Cdd:COG4785   140 YAYAYLNRGIALYYLGR-------------YELAIADLEKALELDPND-------------------------------- 174

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1958751669 202 aVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKTL 250
Cdd:COG4785   175 -PERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLAL 222
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
193-296 6.00e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 6.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 193 HYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYRktlllARQLKDRAVEAQscYSLGNT 272
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAEAL--LNLAEL 68

                          90       100
                  ....*....|....*....|....
gi 1958751669 273 YTLLQDYEKAIEYHLKHLAIAQEL 296
Cdd:COG3063    69 LLELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
159-256 6.06e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 6.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958751669 159 LQAAVELYEENLSLvtalgdRAAQGRAFGNLGNTHYLLGNFRDAvIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGE 238
Cdd:COG3063     8 LEEAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAE------ALLNLAELLLELGD 74

                          90
                  ....*....|....*...
gi 1958751669 239 FETASEYYRKTLLLARQL 256
Cdd:COG3063    75 YDEALAYLERALELDPSA 92
TPR_8 pfam13181
Tetratricopeptide repeat;
224-248 7.39e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.29  E-value: 7.39e-03
                          10        20
                  ....*....|....*....|....*
gi 1958751669 224 RAYSNLGNAYIFLGEFETASEYYRK 248
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEK 26
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 45-75 7.57e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 7.57e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1958751669   45 IYSQLGNAYFYLHDYAKALEYHHHDLTLART 75
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH