|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
246-504 |
1.03e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 246 RQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQL 325
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 326 EKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKK 405
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 406 QYEVL--ILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEgdyRKLEEMHQRCLAAERSKDDLQLR 483
Cdd:COG1196 395 AAELAaqLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA---EEEAELEEEEEALLELLAELLEE 471
|
250 260
....*....|....*....|.
gi 1958749346 484 LKTAENRIKQLEINSSEEISR 504
Cdd:COG1196 472 AALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
250-558 |
1.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 250 LDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQI 329
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 330 KELQAK--CSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKktishliQDAAIKARKEVESTKKQY 407
Cdd:TIGR02168 305 QILRERlaNLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-------LEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 408 EVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQ--DEGDYRKLEEMHQRCLAAERSKDDLQLRLK 485
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllKKLEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958749346 486 TAENRIKQLEinsseeisrshEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKA 558
Cdd:TIGR02168 458 RLEEALEELR-----------EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
171-561 |
4.58e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 4.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 171 EAQIHVFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKQLRSRGSVQDhqGRNMEASRQAKl 250
Cdd:PTZ00121 1061 EAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAED--ARKAEEARKAE- 1137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 251 dlrvAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRvqQLQSSIKQLESRLCIAIQEA-NVLKTGKTQLEKQI 329
Cdd:PTZ00121 1138 ----DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK--KAEAARKAEEVRKAEELRKAeDARKAEAARKAEEE 1211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 330 KELQAKCSESENEKYEAISRARDSMQLLEEANiKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQyev 409
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE--- 1287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 410 lilQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAEN 489
Cdd:PTZ00121 1288 ---EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958749346 490 RIKQLEINSSEEISRSHEMIQKLQTVLESErencgfvseqrlKLQQENEQLQKETEDLRKVALEAQKKAKLK 561
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKAD------------EAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
62-593 |
1.16e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 62 EYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHSKLKDAVEKQlEALPFGTgigndicaddETVRNLQEQLQIAN 141
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA-EAAEKKK----------EEAKKKADAAKKKA 1387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 142 QEKNWAVQLWQTASQELESVQKLYQEhmTEAQIHVFENRKQKDQLNNFQQLTKKLHVANENIEmtnhhfLKTVTEQNMEI 221
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKA--AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE------AKKKAEEAKKA 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 222 EKLRKQLRSRGSVQDHQGRNMEASR--QAKLDLRVAVTKVEELTKvteglQEQMLKKEEDIMSAQGKEEASDRRvqQLQS 299
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKadEAKKKAEEAKKKADEAKK-----AAEAKKKADEAKKAEEAKKADEAK--KAEE 1532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 300 SIKQLESRLCIAIQEANVLKTGKtQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEkQKEVERE 379
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE-EKKMKAE 1610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 380 KMKKTishliQDAAIKA---RKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRavEEELEKIYREGKQD 456
Cdd:PTZ00121 1611 EAKKA-----EEAKIKAeelKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK--AEEDKKKAEEAKKA 1683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 457 EGDYRKLEEMHQRclAAERSKDDLQLRLKTAENRIKQLEINSSEEISRSHemiqklqtvleserencgfvSEQRLKLQQE 536
Cdd:PTZ00121 1684 EEDEKKAAEALKK--EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK--------------------AEEAKKEAEE 1741
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958749346 537 NeqlQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREM--EDSNRNSIVE 593
Cdd:PTZ00121 1742 D---KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELdeEDEKRRMEVD 1797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
59-611 |
1.05e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 59 LIAEYEKHLEELNRQ----LTYYQKHMGEMKLQLETVITENERLHSKLkDAVEKQLEALpfgtgiGNDICADDETVRNLQ 134
Cdd:COG1196 194 ILGELERQLEPLERQaekaERYRELKEELKELEAELLLLKLRELEAEL-EELEAELEEL------EAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 135 EQLQIANQEKnwavqlwQTASQELESVQKLYQEHMTEAQIHVFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTV 214
Cdd:COG1196 267 AELEELRLEL-------EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 215 TEQNMEIEKLRKQLrsrgsvqdhqgrnmeasRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRV 294
Cdd:COG1196 340 EELEEELEEAEEEL-----------------EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 295 QQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQK 374
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 375 EVEREKMKKTISHLIQ--------DAAIKARKEVESTKKQYEVLILQLKEE-----------LSALQMDCDEKQGQIDRA 435
Cdd:COG1196 483 LEELAEAAARLLLLLEaeadyegfLEGVKAALLLAGLRGLAGAVAVLIGVEaayeaaleaalAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 436 I------RGKRAVEEELEKIyrEGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEINSSEEISRSHEMI 509
Cdd:COG1196 563 IeylkaaKAGRATFLPLDKI--RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 510 QKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKE---HGFEVQLREMEDS 586
Cdd:COG1196 641 TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEeerELAEAEEERLEEE 720
|
570 580
....*....|....*....|....*
gi 1958749346 587 NRNSIVELRHLLAAQQKTANRWKEE 611
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEE 745
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
261-617 |
1.50e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.97 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 261 ELTKVTEGLQEQmlkKEEDIMSAQGKEEASDRRVQQLQSSIKQLEsrlciaiQEANVLKTGKTQLEKQIKELQAKCSESE 340
Cdd:pfam07888 45 ELLQAQEAANRQ---REKEKERYKRDREQWERQRRELESRVAELK-------EELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 341 NEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTishliQDAAIKARKEVESTKKQYEVLILQLKEELSA 420
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKER-----AKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 421 LQMDCDEKQGQIDRAIRGKRAVEEELEKIyregkqdegdYRKLEEMHQRCLAAERSKDDL---QLRLKTAENRIKQLEIN 497
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTL----------TQKLTTAHRKEAENEALLEELrslQERLNASERKVEGLGEE 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 498 SSEEIS-RSHEMIQKLQTVLESERENcGFVSEQRLKLQQENEQLQKETEDLRKVA-LEAQKKAKLKVSTMEHQFSIKEH- 574
Cdd:pfam07888 260 LSSMAAqRDRTQAELHQARLQAAQLT-LQLADASLALREGRARWAQERETLQQSAeADKDRIEKLSAELQRLEERLQEEr 338
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1958749346 575 ----GFEVQLREMEDSNR-------NSIVELRHLLAAQQKTANRWKEETKKLTE 617
Cdd:pfam07888 339 mereKLEVELGREKDCNRvqlsesrRELQELKASLRVAQKEKEQLQAEKQELLE 392
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-535 |
1.63e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 21 QHQIEHIFRDPAMQNSMSKGGRGDTLTNSVNDQSALPPLIAEYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHS 100
Cdd:pfam15921 298 QSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 101 KLKD------------AVEKQLEALPFGTGIGNDICAD----DETVRNLQ-------------------EQLQIANQEKN 145
Cdd:pfam15921 378 QLQKlladlhkrekelSLEKEQNKRLWDRDTGNSITIDhlrrELDDRNMEvqrleallkamksecqgqmERQMAAIQGKN 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 146 WAVQLWQTASQELESVQKLYQEHMTE--AQIHVFENRKQkdqlnNFQQLTKKLHVANENIEMTNhhflktvteqnMEIEK 223
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEEltAKKMTLESSER-----TVSDLTASLQEKERAIEATN-----------AEITK 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 224 LRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMlkkeEDIMSAQGKEeasDRRVQQLQSSIKQ 303
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI----ENMTQLVGQH---GRTAGAMQVEKAQ 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 304 LESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKK 383
Cdd:pfam15921 595 LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 384 TISHLIQDAAIKArKEVESTKKQYEVLILQLKEELS---------------------ALQMDCDEKQGQIDRAIRGKRAV 442
Cdd:pfam15921 675 DYEVLKRNFRNKS-EEMETTTNKLKMQLKSAQSELEqtrntlksmegsdghamkvamGMQKQITAKRGQIDALQSKIQFL 753
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 443 EEELEKIYREGKQDEGDYRKLEEmHQRCLAAERSKDDLQLR-LKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESERE 521
Cdd:pfam15921 754 EEAMTNANKEKHFLKEEKNKLSQ-ELSTVATEKNKMAGELEvLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
570
....*....|....
gi 1958749346 522 ncgfvSEQRLKLQQ 535
Cdd:pfam15921 833 -----ESVRLKLQH 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
157-553 |
1.66e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 157 ELESVQKLYQEHMTEAQIHVFENRKQKDQLNN-FQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKQLRSRGSVQ 235
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEeLEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 236 DHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEA 315
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 316 NVLKTGKTQLEKQIKELQAkcsesenekyeaisrARDSMQLLEEANIKQNQILLEEkqKEVEREKMKKTISHLiqDAAIK 395
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAA---------------EIEELEELIEELESELEALLNE--RASLEEALALLRSEL--EELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 396 ARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRaIRGKRAVEEELEkiyregkqdegdyrkLEEMHQRCLAAER 475
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN-LQERLSEEYSLT---------------LEEAEALENKIED 965
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 476 SKDDLQLRLKTAENRIKQL-EIN--SSEEisrshemiqklqtvLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVAL 552
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKELgPVNlaAIEE--------------YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
|
.
gi 1958749346 553 E 553
Cdd:TIGR02168 1032 E 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
293-570 |
1.72e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 293 RVQQLQSSIKQLESRLCIAIQEanvlktgKTQLEKQIKELQAKCSESENEkyeaISRARDSMQLLEEANIKQNQIL--LE 370
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSE-------LRRIENRLDELSQELSDASRK----IGEIEKEIEQLEQEEEKLKERLeeLE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 371 EKQKEVEREKmkktishliqDAAIKARKEVESTKKQYEVLILQLKEELSAL-QMDCDEKQGQIDRAIRGKRAVEEELEKI 449
Cdd:TIGR02169 744 EDLSSLEQEI----------ENVKSELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 450 YREGKQdegdyrKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEinssEEISRSHEMIQKLQTVLESERENCGFVSEQ 529
Cdd:TIGR02169 814 LREIEQ------KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE----KEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1958749346 530 RLKLQQENEQLQKETEDLRKvaleAQKKAKLKVSTMEHQFS 570
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELER----KIEELEAQIEKKRKRLS 920
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
324-585 |
2.24e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 324 QLEKQIKELQAKCSESENEkyeaisrardsmqlLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARKE--VE 401
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKA--------------LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVeqLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 402 STKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQ-----------RC 470
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTllneeaanlreRL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 471 LAAERSKDDLQLRLKTAENRIKQLE---INSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDL 547
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSediESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260 270
....*....|....*....|....*....|....*...
gi 1958749346 548 RKVALEAQKKAKLKvSTMEHQFSIKEHGFEVQLREMED 585
Cdd:TIGR02168 907 ESKRSELRRELEEL-REKLAQLELRLEGLEVRIDNLQE 943
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
340-557 |
5.81e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 340 ENEKYEAISRARDSMQLLEEAnikQNQILLEEKQKEV---------EREKMKKTISHLIQDAAiKARKEVESTKkqyevl 410
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA---HEALEDAREQIELlepirelaeRYAAARERLAELEYLRA-ALRLWFAQRR------ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 411 ILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDyrKLEEMHQRCLAAERSKDDLQLRLKTAENR 490
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD--RLEQLEREIERLERELEERERRRARLEAL 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958749346 491 IKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKV--ALEAQKK 557
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaSLERRKS 436
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
236-547 |
6.10e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 236 DHQGRNMEASRQAK------LDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQgkEEASDRRVQ--QLQSSIKQLESR 307
Cdd:COG3096 334 DHLNLVQTALRQQEkieryqEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAE--EEVDSLKSQlaDYQQALDVQQTR 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 308 lCIAIQEA-NVLKTGKTQLE------KQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQ--ILLEEKQKEVER 378
Cdd:COG3096 412 -AIQYQQAvQALEKARALCGlpdltpENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKayELVCKIAGEVER 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 379 EKMKKTISHLIQDAAikarkEVESTKKQYEVLILQLKE--ELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQD 456
Cdd:COG3096 491 SQAWQTARELLRRYR-----SQQALAQRLQQLRAQLAEleQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQ 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 457 -EGDYRKLEEMHQRCLAAERSKDDLQLRLK----------TAENRIKQLEINSSEEISRSHEMIQKLQTVLESEREncgf 525
Cdd:COG3096 566 lEELEEQAAEAVEQRSELRQQLEQLRARIKelaarapawlAAQDALERLREQSGEALADSQEVTAAMQQLLERERE---- 641
|
330 340
....*....|....*....|..
gi 1958749346 526 VSEQRLKLQQENEQLQKETEDL 547
Cdd:COG3096 642 ATVERDELAARKQALESQIERL 663
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
371-620 |
7.52e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 7.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 371 EKQKEVEReKMKKTISHL--IQDAAIKARKEVESTKKQYEVLI--LQLKEELSALQ-----MDCDEKQGQIDRAIRGKRA 441
Cdd:TIGR02168 172 ERRKETER-KLERTRENLdrLEDILNELERQLKSLERQAEKAEryKELKAELRELElallvLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 442 VEEELEKIYREGKQDEGdyrKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEiNSSEEISRSHEMIQKLQTVLESERE 521
Cdd:TIGR02168 251 AEEELEELTAELQELEE---KLEELRLEVSELEEEIEELQKELYALANEISRLE-QQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 522 NcgfVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEV---------QLREMEDSNRNSIV 592
Cdd:TIGR02168 327 E---LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQletlrskvaQLELQIASLNNEIE 403
|
250 260
....*....|....*....|....*...
gi 1958749346 593 ELRHLLAAQQKTANRWKEETKKLTESAE 620
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLE 431
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
60-547 |
1.22e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 60 IAEYEK---HLEELNRQLTYYQKHMGemKLQLETVITENERLHSKLK---------DAVEKQLEALPFGTGIGNDICADD 127
Cdd:TIGR01612 1199 IAEIEKdktSLEEVKGINLSYGKNLG--KLFLEKIDEEKKKSEHMIKameayiedlDEIKEKSPEIENEMGIEMDIKAEM 1276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 128 ETV---RNLQEQLQIANQE--------KNWAVQLWQTASQE--LESVQKLYQEHMTEAQIHVFE---------NRKQKDQ 185
Cdd:TIGR01612 1277 ETFnisHDDDKDHHIISKKhdenisdiREKSLKIIEDFSEEsdINDIKKELQKNLLDAQKHNSDinlylneiaNIYNILK 1356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 186 LNNFQQLTKKLHVANENIEMTNhhflKTVTEQNMEIEKLRKQLRSRGSVQDHQGRnMEASRQAKlDLRVAVTKVEELtkv 265
Cdd:TIGR01612 1357 LNKIKKIIDEVKEYTKEIEENN----KNIKDELDKSEKLIKKIKDDINLEECKSK-IESTLDDK-DIDECIKKIKEL--- 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 266 teglQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLE--SRLCIAIQEANvlktGKTQLEKQIKELQAKCSESENEK 343
Cdd:TIGR01612 1428 ----KNHILSEESNIDTYFKNADENNENVLLLFKNIEMADnkSQHILKIKKDN----ATNDHDFNINELKEHIDKSKGCK 1499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 344 YEAISRARdsmqlleeaNIKQNQILLEEKQKEVerekmkktISHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQM 423
Cdd:TIGR01612 1500 DEADKNAK---------AIEKNKELFEQYKKDV--------TELLNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFIL 1562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 424 DCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSK---DDLQLRLKTAENRIKQLEINSSE 500
Cdd:TIGR01612 1563 EAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKkkiNDCLKETESIEKKISSFSIDSQD 1642
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1958749346 501 -EISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDL 547
Cdd:TIGR01612 1643 tELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDV 1690
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
147-470 |
2.21e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 44.25 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 147 AVQLWQTASQELESVQKLYQEHMTEAQihvFENRKQKDQLNN-FQQLTKKLHVANENIEMTNhhflktvtEQNMEIEKLR 225
Cdd:pfam05667 213 AAELAAAQEWEEEWNSQGLASRLTPEE---YRKRKRTKLLKRiAEQLRSAALAGTEATSGAS--------RSAQDLAELL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 226 KQLRSRGSVQDHQGRNMEASRQAKLDL-RVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQL 304
Cdd:pfam05667 282 SSFSGSSTTDTGLTKGSRFTHTEKLQFtNEAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 305 ESRLCIAIQEANVLKTGKTQLEKQ-----------------IKELQAKCSESEN------EKYEAIsRARDSMQLLEEAN 361
Cdd:pfam05667 362 ESSIKQVEEELEELKEQNEELEKQykvkkktldllpdaeenIAKLQALVDASAQrlvelaGQWEKH-RVPLIEEYRALKE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 362 IKQNQiLLEEKQKEVEREKMKKTISHLIQDAAIKAR------KEVESTKKQ-----YEVLILQL-------KEELSALQM 423
Cdd:pfam05667 441 AKSNK-EDESQRKLEEIKELREKIKEVAEEAKQKEElykqlvAEYERLPKDvsrsaYTRRILEIvknikkqKEEITKILS 519
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1958749346 424 DCDEKQGQIDRAI-RGKRAVEEELEKIYREGKQDEG---DYRKLEEMHQRC 470
Cdd:pfam05667 520 DTKSLQKEINSLTgKLDRTFTVTDELVFKDAKKDESvrkAYKYLAALHENC 570
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
369-561 |
2.46e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 369 LEEKQKEVEREKMKKTISHLIQ-DAAIKARKEVESTKKQYEVLILQLK------EELSALQMDCDEKQGQIDRAIRgKRA 441
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEELEeleeelEELEAELEELREELEKLEKLLQ-LLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 442 VEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEINSSEEisrSHEMIQKLQTVLESERE 521
Cdd:COG4717 130 LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEELEELQQ 206
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958749346 522 NCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLK 561
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
255-465 |
5.82e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 255 AVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQA 334
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 335 KCSESENE------KYEAISRARDSMQLLEEANIKQNQILLE-----EKQKEVEREKMKKTISHLIQdaaikARKEVEST 403
Cdd:COG4942 98 ELEAQKEElaellrALYRLGRQPPLALLLSPEDFLDAVRRLQylkylAPARREQAEELRADLAELAA-----LRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958749346 404 KKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEE 465
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
413-620 |
7.85e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 7.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 413 QLKEELSALQMDcdEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRclaAERSKDDLQLRLKTAENRIK 492
Cdd:COG1196 224 ELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE---LELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 493 QLE---INSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQF 569
Cdd:COG1196 299 RLEqdiARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958749346 570 SIKEHGFEVQLREMEDSN--RNSIVELRHLLAAQQKTANRWKEETKKLTESAE 620
Cdd:COG1196 379 EELEELAEELLEALRAAAelAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-558 |
8.47e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 8.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 224 LRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQ 303
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 304 LESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEA----------ISRARDSMQLLEE-ANIKQNQILLEEK 372
Cdd:PRK02224 291 LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrvaaqahneeAESLREDADDLEErAEELREEAAELES 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 373 QKEVEREKMKKTISHL--IQDAAIKARKEVESTKKQYEVLiLQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIY 450
Cdd:PRK02224 371 ELEEAREAVEDRREEIeeLEEEIEELRERFGDAPVDLGNA-EDFLEELREERDELREREAELEATLRTARERVEEAEALL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 451 REGK--------QDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLE--INSSEEISRSHEMIQKLQTVLESER 520
Cdd:PRK02224 450 EAGKcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERR 529
|
330 340 350
....*....|....*....|....*....|....*...
gi 1958749346 521 ENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKA 558
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-598 |
1.46e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 211 LKTVTEQNMEIEKLRKQLRSRGSVQDhQGRNMEASRQAKL-----------DLRVAVTKVEELTKVTEGLQEQMLKKEED 279
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEE-LIKEKEKELEEVLreineisselpELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 280 IMSAQGKEEASDRRVQQLQSSIKQLESRL------CIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDS 353
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIeeleekVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 354 MQLLEEANIKQNQI-LLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQYEVL----ILQLKEELSALQMDCDEK 428
Cdd:PRK03918 327 EERIKELEEKEERLeELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtpekLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 429 QGQIDRAIRGKRAVEEELEKIYREGKQDEGDY----RKLEEMHQRCLAAERSKD--DLQLRLKTAENRIKQLEINSSEEi 502
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAElkRIEKELKEIEEKERKLRKELREL- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 503 srshEMIQKLQTVLESERENCGFVSEQRLKLQQEN-EQLQKETEDLRKVaLEAQKKAKLKVSTMEHQFSiKEHGFEVQLR 581
Cdd:PRK03918 486 ----EKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKL-KEKLIKLKGEIKSLKKELE-KLEELKKKLA 559
|
410
....*....|....*..
gi 1958749346 582 EMEDSNRNSIVELRHLL 598
Cdd:PRK03918 560 ELEKKLDELEEELAELL 576
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
246-445 |
1.52e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 246 RQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRlciaiqeanvLKTGKTQL 325
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE----------IEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 326 EKQIKELQAKCS---------ESEN-----EKYEAISRARDSMQ-LLEEanIKQNQILLEEKQKEVERekmKKTISHLIQ 390
Cdd:COG3883 89 GERARALYRSGGsvsyldvllGSESfsdflDRLSALSKIADADAdLLEE--LKADKAELEAKKAELEA---KLAELEALK 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958749346 391 DAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEE 445
Cdd:COG3883 164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
265-409 |
1.79e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 265 VTEGLQEQMLKKEEDimSAQGKEEASDRRVQQLQSSIKQLESRlciaIQEanvLKTGKTQLEKQIKELQAKCSESENEKY 344
Cdd:COG2433 381 ALEELIEKELPEEEP--EAEREKEHEERELTEEEEEIRRLEEQ----VER---LEAEVEELEAELEEKDERIERLERELS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 345 EAISRARDSMQLLEEANIKQNQI-----LLEEKQKEVER-----EKMKKTISHLIQDAAIKA-------RKEVESTKKQY 407
Cdd:COG2433 452 EARSEERREIRKDREISRLDREIerlerELEEERERIEElkrklERLKELWKLEHSGELVPVkvvekftKEAIRRLEEEY 531
|
..
gi 1958749346 408 EV 409
Cdd:COG2433 532 GL 533
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
60-585 |
1.84e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 60 IAEYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHSKLKDAVEKQLEALpfgtgigNDICADDETVRNLQEQLqi 139
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-------QDIARLEERRRELEERL-- 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 140 anQEKNWAVQLWQTASQELESVQKLYQEHMTEAQIhvfENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNM 219
Cdd:COG1196 319 --EELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 220 EIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELtkvTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQS 299
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE---EEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 300 SIKQLESRLCIAIQEAnvlktgktQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVERE 379
Cdd:COG1196 471 EAALLEAALAELLEEL--------AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 380 KMKKTISHLI--QDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRG------------KRAVEEE 445
Cdd:COG1196 543 ALAAALQNIVveDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvasdlreadaryYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 446 LEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESERENcgf 525
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL--- 699
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 526 vSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMED 585
Cdd:COG1196 700 -LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
220-499 |
2.00e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 220 EIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELT---KVTEGLQEQMLKKEEDIMSAqgkeEASDRRVQQ 296
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeIDVASAEREIAELEAELERL----DASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 297 LQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQakcsesenekyEAISRARDSMQLLEEANIKQNQILLEEKQKEV 376
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-----------EELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 377 EREKMKKTISHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDcdekqgqIDRAIRGKRAVEEELEKIyregkQD 456
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETAD-------LDADLESLPEYLALLDRL-----EE 826
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1958749346 457 EGDYRKLEEMHQRCL-AAERSKDDLQLRLKTAENRIKQ--LEINSS 499
Cdd:COG4913 827 DGLPEYEERFKELLNeNSIEFVADLLSKLRRAIREIKEriDPLNDS 872
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
344-614 |
2.92e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 344 YEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQ-DAAIKARKEVESTKKQYEVLILQLKEELsALQ 422
Cdd:pfam17380 233 YEKMERRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQhQKAVSERQQQEKFEKMEQERLRQEKEEK-ARE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 423 MdcdEKQGQIDRAIRGKRAVEEELEKIYREgkqdegdyrkleemhQRCLAAERSKDDLQLRLktaENRIKQLEINSSEEI 502
Cdd:pfam17380 312 V---ERRRKLEEAEKARQAEMDRQAAIYAE---------------QERMAMERERELERIRQ---EERKRELERIRQEEI 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 503 SRSHEMIQKLQTvLESERencgfvseqrlklQQENEQLQKETEDLRKVAL---EAQKKAKLKVSTMEHQFSIKEHGFEVQ 579
Cdd:pfam17380 371 AMEISRMRELER-LQMER-------------QQKNERVRQELEAARKVKIleeERQRKIQQQKVEMEQIRAEQEEARQRE 436
|
250 260 270
....*....|....*....|....*....|....*..
gi 1958749346 580 LREMEDSNRNSI--VELRHLLAAQQKTANRWKEETKK 614
Cdd:pfam17380 437 VRRLEEERAREMerVRLEEQERQQQVERLRQQEEERK 473
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
292-433 |
3.01e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 292 RRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESEnEKYEAISRARDSMQLL-EEANIKQNQILLE 370
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE-EQLGNVRNNKEYEALQkEIESLKRRISDLE 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958749346 371 EKQKEV--EREKMKKTISHLiQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQID 433
Cdd:COG1579 110 DEILELmeRIEELEEELAEL-EAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
211-505 |
3.14e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 211 LKTVTEQNMEIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAV-TKVEELTKVTEGLQEQMLKKEEDI-----MSAQ 284
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVkSELKELEARIEELEEDLHKLEEALndleaRLSH 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 285 GKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQ 364
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 365 NQILLEEKQKEVEREKMKKTISHLIQD--AAIKARKEVESTKKQYEVLILQLKEELSALQmdcdEKQGQIDRAIRGKRAV 442
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQlrELERKIEELEAQIEKKRKRLSELKAKLEALE----EELSEIEDPKGEDEEI 946
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958749346 443 EEE---LEKIYREGKQDEGDYRKLEEMHQRCL----AAERSKDDLQLRLKTAENRIKQLE--INSSEEISRS 505
Cdd:TIGR02169 947 PEEelsLEDVQAELQRVEEEIRALEPVNMLAIqeyeEVLKRLDELKEKRAKLEEERKAILerIEEYEKKKRE 1018
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
233-547 |
4.33e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 233 SVQDHQGRNMEASRQAKLDLRVavtkVEELTKVTEGLQEQMLKKEEdimsAQGKEEASDRRVQQLQSSIKQLESRLCIAI 312
Cdd:PRK04863 332 AASDHLNLVQTALRQQEKIERY----QADLEELEERLEEQNEVVEE----ADEQQEENEARAEAAEEEVDELKSQLADYQ 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 313 QEANVLKTGKTQ------------------------LEKQIKELQAKCSESENEKYEAISRARDSmqllEEANIKQNQ-- 366
Cdd:PRK04863 404 QALDVQQTRAIQyqqavqalerakqlcglpdltadnAEDWLEEFQAKEQEATEELLSLEQKLSVA----QAAHSQFEQay 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 367 ILLEEKQKEVEREKMKKTISHLIQDAaIKARKEVESTKkqyevlilQLKEELSALQMDcDEKQGQIDRAIR--GKRA--- 441
Cdd:PRK04863 480 QLVRKIAGEVSRSEAWDVARELLRRL-REQRHLAEQLQ--------QLRMRLSELEQR-LRQQQRAERLLAefCKRLgkn 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 442 --VEEELEKIYRE-GKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLK----------TAENRIKQLEINSSEEISRSHEM 508
Cdd:PRK04863 550 ldDEDELEQLQEElEARLESLSESVSEARERRMALRQQLEQLQARIQrlaarapawlAAQDALARLREQSGEEFEDSQDV 629
|
330 340 350
....*....|....*....|....*....|....*....
gi 1958749346 509 IQKLQTVLESEREncgfVSEQRLKLQQENEQLQKETEDL 547
Cdd:PRK04863 630 TEYMQQLLERERE----LTVERDELAARKQALDEEIERL 664
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
126-630 |
6.02e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 126 DDETVRNLQEQLQIANQEKNWAVQLWQTASQELESVQKLYQEHMTEAQIHVFE-NRKQKDQLNNFQQLTKKLHVANENIE 204
Cdd:pfam05483 220 DHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQlEEKTKLQDENLKELIEKKDHLTKELE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 205 MTNHHFLKTVTEQNMEIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGL---QEQMLKKEED-- 279
Cdd:pfam05483 300 DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELlrtEQQRLEKNEDql 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 280 -IMSAQGKEEASDRRVQQLQSSIKQLE-SRLCIAIQEANVLKTGKTQLEKQIKELQAKCSE------------------- 338
Cdd:pfam05483 380 kIITMELQKKSSELEEMTKFKNNKEVElEELKKILAEDEKLLDEKKQFEKIAEELKGKEQElifllqarekeihdleiql 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 339 --SENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLI------QDAAIKARKEVESTKKQYEVL 410
Cdd:pfam05483 460 taIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTlelkkhQEDIINCKKQEERMLKQIENL 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 411 I---LQLKEELSALQMDC----DEKQGQIDRAIRGKRAVEEELEKIYREG-----------KQDEGDYRKLEEMHQRCLA 472
Cdd:pfam05483 540 EekeMNLRDELESVREEFiqkgDEVKCKLDKSEENARSIEYEVLKKEKQMkilenkcnnlkKQIENKNKNIEELHQENKA 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 473 AERSKDDLQLRLKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESERencgfVSEQrlKLQQENEQLQKETEDLRKVAL 552
Cdd:pfam05483 620 LKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKK-----ISEE--KLLEEVEKAKAIADEAVKLQK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 553 EAQKKAKLKVSTM-------EHQFS--IKEHGFEVQL---REMEDSNRNSIVE-----LRHLLAAQQKTANRWKEETKKL 615
Cdd:pfam05483 693 EIDKRCQHKIAEMvalmekhKHQYDkiIEERDSELGLyknKEQEQSSAKAALEielsnIKAELLSLKKQLEIEKEEKEKL 772
|
570
....*....|....*
gi 1958749346 616 TESAEMRISSLNRCK 630
Cdd:pfam05483 773 KMEAKENTAILKDKK 787
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
220-570 |
6.25e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 220 EIEKLRKQLRSRGSVQDHQGRNMeASRQAKLDLRVAVTKVEELTKVTEGLQ----EQMLKKEEDIMSAQ--GKEEASDRR 293
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNM-ALRKAEEAKKAEEARIEEVMKLYEEEKkmkaEEAKKAEEAKIKAEelKKAEEEKKK 1634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 294 VQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEAniKQNQILLEEKQ 373
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKKKEA 1712
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 374 KEVEREKMKKTISHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKiyREG 453
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE--EDE 1790
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 454 KQDEGDYRKLEEMHQRCLAAERSKDDLQLRLktaeNRIKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKL 533
Cdd:PTZ00121 1791 KRRMEVDKKIKDIFDNFANIIEGGKEGNLVI----NDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNK 1866
|
330 340 350
....*....|....*....|....*....|....*..
gi 1958749346 534 QQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFS 570
Cdd:PTZ00121 1867 EADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIP 1903
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
222-564 |
6.46e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 222 EKLRKQLRSRGSVQDHQGRNMEASRQAKL---DLRVAVTKVEELTKVTeglQEQMLKKEEDIMSAQGKEEASD-RRVQQL 297
Cdd:pfam17380 307 EKAREVERRRKLEEAEKARQAEMDRQAAIyaeQERMAMERERELERIR---QEERKRELERIRQEEIAMEISRmRELERL 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 298 QSSIKQLESRLciaIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAisrardsmqllEEANIKQNQILLEEKQKEVE 377
Cdd:pfam17380 384 QMERQQKNERV---RQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ-----------EEARQREVRRLEEERAREME 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 378 REKMkktishliqdaaikarkevESTKKQYEVLILQLKEElsalqmDCDEKQGQIDRAIRgKRAVEEELEKIYREGKQDE 457
Cdd:pfam17380 450 RVRL-------------------EEQERQQQVERLRQQEE------ERKRKKLELEKEKR-DRKRAEEQRRKILEKELEE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 458 GDYRKLEEMHQRCLAAERSKD------DLQLRLKTAENRIKQLEInssEEISRSHEMIQKlqtvleserencgfVSEQRL 531
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEMEErqkaiyEEERRREAEEERRKQQEM---EERRRIQEQMRK--------------ATEERS 566
|
330 340 350
....*....|....*....|....*....|...
gi 1958749346 532 KLqqenEQLQKETEDLRKVALEAQKKAKLKVST 564
Cdd:pfam17380 567 RL----EAMEREREMMRQIVESEKARAEYEATT 595
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
174-505 |
8.40e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 174 IHVFENRKQKDQLNNFQQLTKKLHVANENIEMtnHHFLKTVTEQNMEIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLR 253
Cdd:pfam02463 179 IEETENLAELIIDLEELKLQELKLKEQAKKAL--EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 254 VAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSikQLESRLCIAIQEANVLKTGKTQLEKQIKELQ 333
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL--KLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 334 AKCSESENEK-------YEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARK-EVESTKK 405
Cdd:pfam02463 335 EEIEELEKELkeleikrEAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEaQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 406 QYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLK 485
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
330 340
....*....|....*....|
gi 1958749346 486 TAENRIKQLEINSSEEISRS 505
Cdd:pfam02463 495 LEERSQKESKARSGLKVLLA 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
308-559 |
9.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.59 E-value: 9.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 308 LCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISH 387
Cdd:COG4942 8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 388 LIQDAAiKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMH 467
Cdd:COG4942 88 LEKEIA-ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749346 468 QrclAAERSKDDLQLRLKTAENRIKQLEinssEEISRSHEMIQKLQTVLESERencgfvsEQRLKLQQENEQLQKETEDL 547
Cdd:COG4942 167 A---ELEAERAELEALLAELEEERAALE----ALKAERQKLLARLEKELAELA-------AELAELQQEAEELEALIARL 232
|
250
....*....|..
gi 1958749346 548 RKVALEAQKKAK 559
Cdd:COG4942 233 EAEAAAAAERTP 244
|
|
| |
