|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
131-672 |
1.54e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 131 RNLQEQLQIAnqEKNWAVQLWQTASQELESVQKLYQEHMTEAQIHVFENRKQKDQLnnfQQLTKKLHVANENIEMTNHHF 210
Cdd:COG1196 216 RELKEELKEL--EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL---EELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 211 LKTVTEQNMEIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEAS 290
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 291 DRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLE 370
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 371 EKQKEVEREKMKKTISHL------IQDAAIKARKEVESTKKQYEVLILQLKEEL----SALQMDCDEKQGQIDRAIRGKR 440
Cdd:COG1196 451 EAELEEEEEALLELLAELleeaalLEAALAELLEELAEAAARLLLLLEAEADYEgfleGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 441 AVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKT-AENRIKQLEINSSEEISRSHEMIQKLQTVLESE 519
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 520 RENCGFVSEQRLkLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLLA 599
Cdd:COG1196 611 ADARYYVLGDTL-LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 600 AQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEH--------------QEKA 665
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEaleelpeppdleelEREL 769
|
....*..
gi 1958749344 666 NRLQRRL 672
Cdd:COG1196 770 ERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
246-705 |
9.08e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 9.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 246 RQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQL 325
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 326 EKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQD---------AAIKA 396
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEleelaeellEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 397 RKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERS 476
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 477 KDDLQLRLKTAENRIKQLEINSSEEISRSHEMIQ--KLQTVLESERENCGFVSEQRLK-----------LQQENEQLQKE 543
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVeaayeaaleaaLAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 544 TEDLRKVALEAQKKAKLKVST-------------------MEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKT 604
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATflpldkiraraalaaalarGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 605 ANRWKEET--KKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASA 682
Cdd:COG1196 635 ALRRAVTLagRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500
....*....|....*....|...
gi 1958749344 683 SQQLSVITVQRRKAASMMNLENI 705
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREEL 737
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
59-686 |
1.47e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 59 LIAEYEKHLEELNRQltyyqkhmgemklqletvitenerlhsklkdaVEKQLEAlpfgtgigndicaddetvRNLQEQLQ 138
Cdd:COG1196 194 ILGELERQLEPLERQ--------------------------------AEKAERY------------------RELKEELK 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 139 IAnqEKNWAVQLWQTASQELESVQKLYQEHMTEAQIHVFENRKQKDQLnnfQQLTKKLHVANENIEMTNHHFLKTVTEQN 218
Cdd:COG1196 224 EL--EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL---EELRLELEELELELEEAQAEEYELLAELA 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 219 MEIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQ 298
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 299 SSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVER 378
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 379 EKMKKTISHL------IQDAAIKARKEVESTKKQYEVLILQLKEEL----SALQMDCDEKQGQIDRAIRGKRAVEEELEK 448
Cdd:COG1196 459 EALLELLAELleeaalLEAALAELLEELAEAAARLLLLLEAEADYEgfleGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 449 IYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKT-AENRIKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVS 527
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 528 EQRLkLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANR 607
Cdd:COG1196 619 GDTL-LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958749344 608 WKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQL 686
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
171-678 |
4.48e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 4.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 171 EAQIHVFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKQLRSRGSVQDhqGRNMEASRQAKl 250
Cdd:PTZ00121 1061 EAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAED--ARKAEEARKAE- 1137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 251 dlrvAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRvqQLQSSIKQLESRLCIAIQEA-NVLKTGKTQLEKQI 329
Cdd:PTZ00121 1138 ----DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK--KAEAARKAEEVRKAEELRKAeDARKAEAARKAEEE 1211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 330 KELQAKCSESENEKYEAISRARDSMQLLEEANiKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQyev 409
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE--- 1287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 410 lilQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAEN 489
Cdd:PTZ00121 1288 ---EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 490 RIKQLEINSSEEISRSHEMIQKLQTVLESER-----ENCGFVSEQRLKLQQEN---EQLQKETEDLRKvALEAQKKAKLK 561
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEakkkaEEDKKKADELKKAAAAKkkaDEAKKKAEEKKK-ADEAKKKAEEA 1443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 562 VSTMEHQFSIKE-HGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQEL 640
Cdd:PTZ00121 1444 KKADEAKKKAEEaKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1958749344 641 LSQLEMANEKVAENEKLILEHQEKANRLQR--RLSQAEER 678
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKaeELKKAEEK 1563
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
371-681 |
2.34e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 371 EKQKEVEReKMKKTISHL--IQDAAIKARKEVESTKKQYEVLI--LQLKEELSALQ-----MDCDEKQGQIDRAIRGKRA 441
Cdd:TIGR02168 172 ERRKETER-KLERTRENLdrLEDILNELERQLKSLERQAEKAEryKELKAELRELElallvLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 442 VEEELEKIYREGKQDEGdyrKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEiNSSEEISRSHEMIQKLQTVLESERE 521
Cdd:TIGR02168 251 AEEELEELTAELQELEE---KLEELRLEVSELEEEIEELQKELYALANEISRLE-QQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 522 NcgfVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEV---------QLREMEDSNRNSIV 592
Cdd:TIGR02168 327 E---LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQletlrskvaQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 593 ELRHLLAAQQKTANRWKEETKKLTESA-EMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRR 671
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330
....*....|
gi 1958749344 672 LSQAEERAAS 681
Cdd:TIGR02168 484 LAQLQARLDS 493
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
250-558 |
5.93e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 5.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 250 LDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQI 329
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 330 KELQAK--CSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKktishliQDAAIKARKEVESTKKQY 407
Cdd:TIGR02168 305 QILRERlaNLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-------LEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 408 EVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQ--DEGDYRKLEEMHQRCLAAERSKDDLQLRLK 485
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllKKLEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958749344 486 TAENRIKQLEinsseeisrshEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKA 558
Cdd:TIGR02168 458 RLEEALEELR-----------EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-666 |
5.64e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 5.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 152 QTASQELESVQKLYQEHMTEAQIHVFENRKQKDQLNNFQQLTKKLHVANENiEMTNHHFLKTVTEQNMEIEKLRKQLRSR 231
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE-AKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 232 GSVQDHQGRNMEASRQAKLDLRVA--VTKVEELTKVTEGLQ--EQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESR 307
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKkaDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 308 lciaiqEANVLKTGKTQLEKQIKELQAKCSE---SENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKT 384
Cdd:PTZ00121 1484 ------KADEAKKKAEEAKKKADEAKKAAEAkkkADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 385 ISHLIQDAAIKARKEVEstKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLE 464
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEE--DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 465 EMHQRCLAAERSKDDlQLRLKTAENRIKqleinsSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQEneqlQKET 544
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAE-ELKKAEEENKIK------AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE----AKKA 1704
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 545 EDLRKVALEAQKKAKlKVSTMEHQFSIKEHgfevQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRIS 624
Cdd:PTZ00121 1705 EELKKKEAEEKKKAE-ELKKAEEENKIKAE----EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1958749344 625 SLKSELSRQKlhtQELLSQLEMANEKVAENEKLILEHQEKAN 666
Cdd:PTZ00121 1780 VIEEELDEED---EKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
324-674 |
1.30e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 324 QLEKQIKELQAKCSESENEkyeaISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQdaaikarkEVEST 403
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKA----LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE--------QLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 404 KKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRclaaerskddLQLR 483
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL----------LNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 484 LKTAENRIKQLEinssEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLrkvaLEAQKKAKLKVS 563
Cdd:TIGR02168 819 AANLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL----LNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 564 TMEHQFSIKEHgfevQLREMEDSNRnsivELRHLLAAQQKTANRWKEEtkklTESAEMRISSLKSELSrqklhtQELLSQ 643
Cdd:TIGR02168 891 LLRSELEELSE----ELRELESKRS----ELRRELEELREKLAQLELR----LEGLEVRIDNLQERLS------EEYSLT 952
|
330 340 350
....*....|....*....|....*....|.
gi 1958749344 644 LEMANEKVAENEKLILEHQEKANRLQRRLSQ 674
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
344-699 |
1.77e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 344 YEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQ-DAAIKARKEVESTKKQYEVLILQLKEELsALQ 422
Cdd:pfam17380 233 YEKMERRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQhQKAVSERQQQEKFEKMEQERLRQEKEEK-ARE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 423 MdcdEKQGQIDRAIRGKRAVEEELEKIYREgkqdegdyrkleemhQRCLAAERSKDDLQLRLktaENRIKQLEINSSEEI 502
Cdd:pfam17380 312 V---ERRRKLEEAEKARQAEMDRQAAIYAE---------------QERMAMERERELERIRQ---EERKRELERIRQEEI 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 503 SRSHEMIQKLQTvLESERencgfvseqrlklQQENEQLQKETEDLRKVAL---EAQKKAKLKVSTMEHQFSIKEHGFEVQ 579
Cdd:pfam17380 371 AMEISRMRELER-LQMER-------------QQKNERVRQELEAARKVKIleeERQRKIQQQKVEMEQIRAEQEEARQRE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 580 LREMED--------------SNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLE 645
Cdd:pfam17380 437 VRRLEEeraremervrleeqERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRK 516
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1958749344 646 MANEKVAENEKLILEHQEKANRLQRRLSQAE-ERAASASQQLSVITVQRRKAASM 699
Cdd:pfam17380 517 LLEKEMEERQKAIYEEERRREAEEERRKQQEmEERRRIQEQMRKATEERSRLEAM 571
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-681 |
2.10e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 211 LKTVTEQNMEIEKLRKQLRSRGSVQDhQGRNMEASRQAKL-----------DLRVAVTKVEELTKVTEGLQEQMLKKEED 279
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEE-LIKEKEKELEEVLreineisselpELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 280 IMSAQGKEEASDRRVQQLQSSIKQLESRL------CIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDS 353
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIeeleekVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 354 MQLLEEANIKQNQI-LLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQYEVL----ILQLKEELSALQMDCDEK 428
Cdd:PRK03918 327 EERIKELEEKEERLeELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtpekLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 429 QGQIDRAIRGKRAVEEELEKIYREGKQDEGDY----RKLEEMHQRCLAAERSKD--DLQLRLKTAENRIKQLEINSSEEi 502
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAElkRIEKELKEIEEKERKLRKELREL- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 503 srshEMIQKLQTVLESERENCGFVSEQRLKLQQEN-EQLQKETEDLRKVaLEAQKKAKLKVSTMEHQFSiKEHGFEVQLR 581
Cdd:PRK03918 486 ----EKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKL-KEKLIKLKGEIKSLKKELE-KLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 582 EMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAE------MRISSLKSELSRQKLHTQELLSQLEMANEKVAENE 655
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500
....*....|....*....|....*.
gi 1958749344 656 KLILEHQEKANRLQRRLSQAEERAAS 681
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELR 665
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
332-686 |
2.57e-05 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 47.59 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 332 LQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTISHLIQDAAIKARKEVESTKKQYEVLI 411
Cdd:pfam15964 319 VRSSLAEAQQRESSAYEQVKQAVQMTEEANFEKTKALIQCEQLKSELERQKERLEKELASQQEKRAQEKEALRKEMKKER 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 412 LQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKL-EEMHQRCLAAERSKDDLQLRLKTAENR 490
Cdd:pfam15964 399 EELGATMLALSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKVcGEMRYQLNQTKMKKDEAEKEHREYRTK 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 491 -IKQLEINSSE------EISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKVS 563
Cdd:pfam15964 479 tGRQLEIKDQEieklglELSESKQRLEQAQQDAARAREECLKLTELLGESEHQLHLTRLEKESIQQSFSNEAKAQALQAQ 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 564 TMEHQFSIKehgfevqLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQ 643
Cdd:pfam15964 559 QREQELTQK-------MQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEECCTLAKKLEEITQKSRSEVEQLSQEKEYLQDR 631
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958749344 644 LEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQL 686
Cdd:pfam15964 632 LEKLQKRNEELEEQCVQHGRMHERMKQRLRQLDKHCQATAQQL 674
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
293-650 |
9.25e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 9.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 293 RVQQLQSSIKQLESRLCIAIQEanvlktgKTQLEKQIKELQAKCSESENEkyeaISRARDSMQLLEEANIKQNQIL--LE 370
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSE-------LRRIENRLDELSQELSDASRK----IGEIEKEIEQLEQEEEKLKERLeeLE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 371 EKQKEVEREKmkktishliqDAAIKARKEVESTKKQYEVLILQLKEELSAL-QMDCDEKQGQIDRAIRGKRAVEEELEKI 449
Cdd:TIGR02169 744 EDLSSLEQEI----------ENVKSELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 450 YREGKQdegdyrKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEinssEEISRSHEMIQKLQTVLESERENCGFVSEQ 529
Cdd:TIGR02169 814 LREIEQ------KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE----KEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 530 RLKLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEvQLREMEDSNRN--SIVELRHLLAAQQKTANR 607
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE-ELSEIEDPKGEdeEIPEEELSLEDVQAELQR 962
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958749344 608 WKEETKKLT----------ESAEMRISSLKSELSRQKLHTQELLSQLEMANEK 650
Cdd:TIGR02169 963 VEEEIRALEpvnmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
157-553 |
1.36e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 157 ELESVQKLYQEHMTEAQIHVFENRKQKDQLNN-FQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKQLRSRGSVQ 235
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEeLEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 236 DHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEA 315
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 316 NVLKTGKTQLEKQIkelqakcsesenekyEAISRARDSMQLLEEANIKQNQILLEEkqKEVEREKMKKTISHLiqDAAIK 395
Cdd:TIGR02168 841 EDLEEQIEELSEDI---------------ESLAAEIEELEELIEELESELEALLNE--RASLEEALALLRSEL--EELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 396 ARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRaIRGKRAVEEELEkiyregkqdegdyrkLEEMHQRCLAAER 475
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN-LQERLSEEYSLT---------------LEEAEALENKIED 965
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 476 SKDDLQLRLKTAENRIKQL-EIN--SSEEisrshemiqklqtvLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVAL 552
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKELgPVNlaAIEE--------------YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
|
.
gi 1958749344 553 E 553
Cdd:TIGR02168 1032 E 1032
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
60-547 |
1.37e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 60 IAEYEK---HLEELNRQLTYYQKHMGemKLQLETVITENERLHSKLK---------DAVEKQLEALPFGTGIGNDICADD 127
Cdd:TIGR01612 1199 IAEIEKdktSLEEVKGINLSYGKNLG--KLFLEKIDEEKKKSEHMIKameayiedlDEIKEKSPEIENEMGIEMDIKAEM 1276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 128 ETV---RNLQEQLQIANQE--------KNWAVQLWQTASQE--LESVQKLYQEHMTEAQIHVFE---------NRKQKDQ 185
Cdd:TIGR01612 1277 ETFnisHDDDKDHHIISKKhdenisdiREKSLKIIEDFSEEsdINDIKKELQKNLLDAQKHNSDinlylneiaNIYNILK 1356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 186 LNNFQQLTKKLHVANENIEMTNhhflKTVTEQNMEIEKLRKQLRSRGSVQDHQGRnMEASRQAKlDLRVAVTKVEELtkv 265
Cdd:TIGR01612 1357 LNKIKKIIDEVKEYTKEIEENN----KNIKDELDKSEKLIKKIKDDINLEECKSK-IESTLDDK-DIDECIKKIKEL--- 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 266 teglQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLE--SRLCIAIQEANvlktGKTQLEKQIKELQAKCSESENEK 343
Cdd:TIGR01612 1428 ----KNHILSEESNIDTYFKNADENNENVLLLFKNIEMADnkSQHILKIKKDN----ATNDHDFNINELKEHIDKSKGCK 1499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 344 YEAISRARdsmqlleeaNIKQNQILLEEKQKEVerekmkktISHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQM 423
Cdd:TIGR01612 1500 DEADKNAK---------AIEKNKELFEQYKKDV--------TELLNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFIL 1562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 424 DCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSK---DDLQLRLKTAENRIKQLEINSSE 500
Cdd:TIGR01612 1563 EAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKkkiNDCLKETESIEKKISSFSIDSQD 1642
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1958749344 501 -EISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDL 547
Cdd:TIGR01612 1643 tELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDV 1690
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
340-557 |
2.06e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 340 ENEKYEAISRARDSMQLLEEAnikQNQILLEEKQKEV---------EREKMKKTISHLIQDAAiKARKEVESTKkqyevl 410
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA---HEALEDAREQIELlepirelaeRYAAARERLAELEYLRA-ALRLWFAQRR------ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 411 ILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDyrKLEEMHQRCLAAERSKDDLQLRLKTAENR 490
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD--RLEQLEREIERLERELEERERRRARLEAL 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958749344 491 IKQLEINSSEEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKV--ALEAQKK 557
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaSLERRKS 436
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
369-685 |
2.52e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 369 LEEKQKEVEREKMKKTISHLIQ-DAAIKARKEVESTKKQYEVLILQLK------EELSALQMDCDEKQGQIDRAIRgKRA 441
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEELEeleeelEELEAELEELREELEKLEKLLQ-LLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 442 VEEELEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLEINSSEEisrSHEMIQKLQTVLESERE 521
Cdd:COG4717 130 LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 522 NCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKLKvstmEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQ 601
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK----EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 602 QKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAAS 681
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
....
gi 1958749344 682 ASQQ 685
Cdd:COG4717 363 LQLE 366
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
220-686 |
3.13e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 220 EIEKLRKQLRSRGSVQDHQGRNMEASRQ--------AKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASD 291
Cdd:COG4913 243 ALEDAREQIELLEPIRELAERYAAARERlaeleylrAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 292 RRVQQLQSS--------IKQLESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARdsmQLLEEANIK 363
Cdd:COG4913 323 EELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAA---ALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 364 QNQILLEEKQKEVEREKMKKTISHLIQDaaikaRKEVESTKKQYEVLILQLKEELSA---------------LQMDCDEK 428
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAE-----IASLERRKSNIPARLLALRDALAEalgldeaelpfvgelIEVRPEEE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 429 --QGQIDRAIRGKR---AVEEE-----LEKIYREGKQDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIK---QLE 495
Cdd:COG4913 475 rwRGAIERVLGGFAltlLVPPEhyaaaLRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRawlEAE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 496 INS--------SEE--------------ISRSHEMIQKLQTVLESERENCGFVSEQRLK-LQQENEQLQKETEDLRKVAL 552
Cdd:COG4913 555 LGRrfdyvcvdSPEelrrhpraitragqVKGNGTRHEKDDRRRIRSRYVLGFDNRAKLAaLEAELAELEEELAEAEERLE 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 553 EAQKKAKLKVSTMEHQFSIKEHGF---------------EVQLREMEDSNrnsiVELRHlLAAQQKTANRWKEETKKLTE 617
Cdd:COG4913 635 ALEAELDALQERREALQRLAEYSWdeidvasaereiaelEAELERLDASS----DDLAA-LEEQLEELEAELEELEEELD 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 618 SAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILE-----------HQEKANRLQRRLSQAEERAASASQQL 686
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfaaalgdavERELRENLEERIDALRARLNRAEEEL 789
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
236-547 |
3.53e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 236 DHQGRNMEASRQAK------LDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQgkEEASDRRVQ--QLQSSIKQLESR 307
Cdd:COG3096 334 DHLNLVQTALRQQEkieryqEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAE--EEVDSLKSQlaDYQQALDVQQTR 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 308 lCIAIQEA-NVLKTGKTQLE------KQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQ--ILLEEKQKEVER 378
Cdd:COG3096 412 -AIQYQQAvQALEKARALCGlpdltpENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKayELVCKIAGEVER 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 379 EKMKKTISHLIQDAAikarkEVESTKKQYEVLILQLKE--ELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQD 456
Cdd:COG3096 491 SQAWQTARELLRRYR-----SQQALAQRLQQLRAQLAEleQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQ 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 457 -EGDYRKLEEMHQRCLAAERSKDDLQLRLK----------TAENRIKQLEINSSEEISRSHEMIQKLQTVLESEREncgf 525
Cdd:COG3096 566 lEELEEQAAEAVEQRSELRQQLEQLRARIKelaarapawlAAQDALERLREQSGEALADSQEVTAAMQQLLERERE---- 641
|
330 340
....*....|....*....|..
gi 1958749344 526 VSEQRLKLQQENEQLQKETEDL 547
Cdd:COG3096 642 ATVERDELAARKQALESQIERL 663
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
261-617 |
3.67e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.73 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 261 ELTKVTEGLQEQmlkKEEDIMSAQGKEEASDRRVQQLQSSIKQLEsrlciaiQEANVLKTGKTQLEKQIKELQAKCSESE 340
Cdd:pfam07888 45 ELLQAQEAANRQ---REKEKERYKRDREQWERQRRELESRVAELK-------EELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 341 NEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKKTishliQDAAIKARKEVESTKKQYEVLILQLKEELSA 420
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKER-----AKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 421 LQMDCDEKQGQIDRAIRGKRAVEEELEKIyregkqdegdYRKLEEMHQRCLAAERSKDDL---QLRLKTAENRIKQLEIN 497
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTL----------TQKLTTAHRKEAENEALLEELrslQERLNASERKVEGLGEE 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 498 SSEEIS-RSHEMIQKLQTVLESERENcGFVSEQRLKLQQENEQLQKETEDLRKVA-LEAQKKAKLKVSTMEHQFSIKEH- 574
Cdd:pfam07888 260 LSSMAAqRDRTQAELHQARLQAAQLT-LQLADASLALREGRARWAQERETLQQSAeADKDRIEKLSAELQRLEERLQEEr 338
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1958749344 575 ----GFEVQLREMEDSNR-------NSIVELRHLLAAQQKTANRWKEETKKLTE 617
Cdd:pfam07888 339 mereKLEVELGREKDCNRvqlsesrRELQELKASLRVAQKEKEQLQAEKQELLE 392
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
286-687 |
4.35e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 286 KEEASDRRV------QQLQSSIKQLESRlcIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEE 359
Cdd:PRK02224 168 RERASDARLgvervlSDQRGSLDQLKAQ--IEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 360 AnikqnqillEEKQKEVERekMKKTISHLIQDAAiKARKEVESTKKQYEVL---ILQLKEELSALQMDCDEKQGQIDRAI 436
Cdd:PRK02224 246 H---------EERREELET--LEAEIEDLRETIA-ETEREREELAEEVRDLrerLEELEEERDDLLAEAGLDDADAEAVE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 437 RGKRAVE---EELEKIYREGKQDEGDYRKLEEmhqrclAAERSKDDLQLRLKTAENRIKQLEI---NSSEEISRSHEMIQ 510
Cdd:PRK02224 314 ARREELEdrdEELRDRLEECRVAAQAHNEEAE------SLREDADDLEERAEELREEAAELESeleEAREAVEDRREEIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 511 KLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKvaleaqkkaklkvstmehqfsiKEHGFEVQLREMedsnRNS 590
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRE----------------------REAELEATLRTA----RER 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 591 IVELRHLLAAQQ-KTANRWKEETKKL--TESAEMRISSLKSELSRQKLHTQELLSQLEMAnEKVAENEKLILEHQEKANR 667
Cdd:PRK02224 442 VEEAEALLEAGKcPECGQPVEGSPHVetIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERRED 520
|
410 420
....*....|....*....|
gi 1958749344 668 LQRRLSQAEERAASASQQLS 687
Cdd:PRK02224 521 LEELIAERRETIEEKRERAE 540
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-535 |
4.77e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 21 QHQIEHIFRDPAMQNSMSKGGRGDTLTNSVNDQSALPPLIAEYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHS 100
Cdd:pfam15921 298 QSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 101 KLKD------------AVEKQLEALPFGTGIGNDICAD----DETVRNLQ-------------------EQLQIANQEKN 145
Cdd:pfam15921 378 QLQKlladlhkrekelSLEKEQNKRLWDRDTGNSITIDhlrrELDDRNMEvqrleallkamksecqgqmERQMAAIQGKN 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 146 WAVQLWQTASQELESVQKLYQEHMTE--AQIHVFENRKQkdqlnNFQQLTKKLHVANENIEMTNhhflktvteqnMEIEK 223
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEEltAKKMTLESSER-----TVSDLTASLQEKERAIEATN-----------AEITK 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 224 LRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMlkkeEDIMSAQGKEeasDRRVQQLQSSIKQ 303
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI----ENMTQLVGQH---GRTAGAMQVEKAQ 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 304 LESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVEREKMKK 383
Cdd:pfam15921 595 LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 384 TISHLIQDAAIKArKEVESTKKQYEVLILQLKEELS---------------------ALQMDCDEKQGQIDRAIRGKRAV 442
Cdd:pfam15921 675 DYEVLKRNFRNKS-EEMETTTNKLKMQLKSAQSELEqtrntlksmegsdghamkvamGMQKQITAKRGQIDALQSKIQFL 753
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 443 EEELEKIYREGKQDEGDYRKLEEmHQRCLAAERSKDDLQLR-LKTAENRIKQLEINSSEEISRSHEMIQKLQTVLESERE 521
Cdd:pfam15921 754 EEAMTNANKEKHFLKEEKNKLSQ-ELSTVATEKNKMAGELEvLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
570
....*....|....
gi 1958749344 522 ncgfvSEQRLKLQQ 535
Cdd:pfam15921 833 -----ESVRLKLQH 841
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-677 |
6.61e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 6.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 224 LRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQ 303
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 304 LESRLCIAIQEANVLKTGKTQLEKQIKELQAKCSESENEKYEA----------ISRARDSMQLLEE-ANIKQNQILLEEK 372
Cdd:PRK02224 291 LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrvaaqahneeAESLREDADDLEErAEELREEAAELES 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 373 QKEVEREKMKKTISHL--IQDAAIKARKEVESTKKQYEVLiLQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIY 450
Cdd:PRK02224 371 ELEEAREAVEDRREEIeeLEEEIEELRERFGDAPVDLGNA-EDFLEELREERDELREREAELEATLRTARERVEEAEALL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 451 REGK--------QDEGDYRKLEEMHQRCLAAERSKDDLQLRLKTAENRIKQLE--INSSEEISRSHEMIQKLQTVLESER 520
Cdd:PRK02224 450 EAGKcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 521 ENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKlkvstmEHQFSIKEhgFEVQLREMEDSnRNSIVELRHLLAA 600
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE------EAREEVAE--LNSKLAELKER-IESLERIRTLLAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 601 QQKTANRWKEETKKLTESAEM-------------RISSLKSELSRQKLhtQELLSQLEMANEKVAENEKLILEHQEKANR 667
Cdd:PRK02224 601 IADAEDEIERLREKREALAELnderrerlaekreRKRELEAEFDEARI--EEAREDKERAEEYLEQVEEKLDELREERDD 678
|
490
....*....|
gi 1958749344 668 LQRRLSQAEE 677
Cdd:PRK02224 679 LQAEIGAVEN 688
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
610-702 |
7.69e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 43.02 E-value: 7.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 610 EETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVI 689
Cdd:PRK11448 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQK 217
|
90
....*....|....
gi 1958749344 690 TVQR-RKAASMMNL 702
Cdd:PRK11448 218 RKEItDQAAKRLEL 231
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
216-470 |
1.46e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.94 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 216 EQNMEIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDL-RVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRV 294
Cdd:pfam05667 272 RSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFtNEAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSI 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 295 QQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQ-----------------IKELQAKCSESEN------EKYEAIsRAR 351
Cdd:pfam05667 352 QELEKEIKKLESSIKQVEEELEELKEQNEELEKQykvkkktldllpdaeenIAKLQALVDASAQrlvelaGQWEKH-RVP 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 352 DSMQLLEEANIKQNQiLLEEKQKEVEREKMKKTISHLIQDAAIKAR------KEVESTKKQ-----YEVLILQL------ 414
Cdd:pfam05667 431 LIEEYRALKEAKSNK-EDESQRKLEEIKELREKIKEVAEEAKQKEElykqlvAEYERLPKDvsrsaYTRRILEIvknikk 509
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958749344 415 -KEELSALQMDCDEKQGQIDRAI-RGKRAVEEELEKIYREGKQDEG---DYRKLEEMHQRC 470
Cdd:pfam05667 510 qKEEITKILSDTKSLQKEINSLTgKLDRTFTVTDELVFKDAKKDESvrkAYKYLAALHENC 570
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
60-688 |
1.63e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 60 IAEYEKHLEELNRQLTYYQKHMGEMKLQLETVITENERLHSKLKDAVEKQLEALPFGTGIGNDICADDETVRNLQEQLQI 139
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 140 ANQEKNWAVQLWQTA---SQELESVQKLYQEHMTEAQIHVFENRKQKDQLNN-FQQLTKKLHVANENIEmtnhHFLKTVT 215
Cdd:TIGR02168 349 LKEELESLEAELEELeaeLEELESRLEELEEQLETLRSKVAQLELQIASLNNeIERLEARLERLEDRRE----RLQQEIE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 216 EQNMEIEKLRKQLRSRGSVQDHQGRNmeasrQAKLDLRVAVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEAsdrrVQ 295
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELEEELE-----ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS----LE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 296 QLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIK---------------ELQAKCSESENEKYEAIS------RARDSM 354
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyeaaieaalggRLQAVVVENLNAAKKAIAflkqneLGRVTF 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 355 QLLEEANIKQNQILLEEKQKEVER------------EKMKKTISHLIQDAAI---------------------------- 394
Cdd:TIGR02168 576 LPLDSIKGTEIQGNDREILKNIEGflgvakdlvkfdPKLRKALSYLLGGVLVvddldnalelakklrpgyrivtldgdlv 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 395 -------KARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREgkqdegdyrkLEEMH 467
Cdd:TIGR02168 656 rpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE----------LEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 468 QRCLAAERSKDDLQLRLKTAENRIKQLEInsseEISRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDL 547
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSK----ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 548 RKVALEAQK----------KAKLKVSTMEHQFSIKEHGFEVQLREMEDsNRNSIVELRHLLAAQQKTANRWKEETKKLTE 617
Cdd:TIGR02168 802 REALDELRAeltllneeaaNLRERLESLERRIAATERRLEDLEEQIEE-LSEDIESLAAEIEELEELIEELESELEALLN 880
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958749344 618 saemRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSV 688
Cdd:TIGR02168 881 ----ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
322-673 |
2.16e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.26 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 322 KTQLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIK----QNQILLEEKQKEVEREKMKKTISHLIQ-----DA 392
Cdd:pfam05557 8 KARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRnqelQKRIRLLEKREAEAEEALREQAELNRLkkkylEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 393 AIKARKEVESTKKQYEVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEEMHQRCLA 472
Cdd:pfam05557 88 LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 473 AERSKDDLQLRLKTAENRIKQLEiNSSEEISRshemIQKLQTVLESERENCGFVSEqrlkLQQENEQLQKETEDLRKvAL 552
Cdd:pfam05557 168 AEQRIKELEFEIQSQEQDSEIVK-NSKSELAR----IPELEKELERLREHNKHLNE----NIENKLLLKEEVEDLKR-KL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 553 EAQKKAKLKVSTMEhqfsIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEEtkkLTESAEmrISSLKSELSR 632
Cdd:pfam05557 238 EREEKYREEAATLE----LEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQRE---IVLKEE--NSSLTSSARQ 308
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958749344 633 QKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLS 673
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVL 349
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
255-465 |
2.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 255 AVTKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQA 334
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 335 KCSESENE------KYEAISRARDSMQLLEEANIKQNQILLE-EKQKEVEREKMKKTISHLIQDAAiKARKEVESTKKQY 407
Cdd:COG4942 98 ELEAQKEElaellrALYRLGRQPPLALLLSPEDFLDAVRRLQyLKYLAPARREQAEELRADLAELA-ALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958749344 408 EVLILQLKEELSALQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEGDYRKLEE 465
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
265-409 |
4.77e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 265 VTEGLQEQMLKKEEDimSAQGKEEASDRRVQQLQSSIKQLESRlciaIQEanvLKTGKTQLEKQIKELQAKCSESENEKY 344
Cdd:COG2433 381 ALEELIEKELPEEEP--EAEREKEHEERELTEEEEEIRRLEEQ----VER---LEAEVEELEAELEEKDERIERLERELS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 345 EAISRARDSMQLLEEANIKQNQI-----LLEEKQKEVER-----EKMKKTISHLIQDAAIKA-------RKEVESTKKQY 407
Cdd:COG2433 452 EARSEERREIRKDREISRLDREIerlerELEEERERIEElkrklERLKELWKLEHSGELVPVkvvekftKEAIRRLEEEY 531
|
..
gi 1958749344 408 EV 409
Cdd:COG2433 532 GL 533
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
220-499 |
7.74e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 220 EIEKLRKQLRSRGSVQDHQGRNMEASRQAKLDLRVAVTKVEELT---KVTEGLQEQMLKKEEDIMSAqgkeEASDRRVQQ 296
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeIDVASAEREIAELEAELERL----DASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 297 LQSSIKQLESRLCIAIQEANVLKTGKTQLEKQIKELQakcsesenekyEAISRARDSMQLLEEANIKQNQILLEEKQKEV 376
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE-----------EELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 377 EREKMKKTISHLIQDAAIKARKEVESTKKQYEVLILQLKEELSALQMDcdekqgqIDRAIRGKRAVEEELEKIyregkQD 456
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETAD-------LDADLESLPEYLALLDRL-----EE 826
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1958749344 457 EGDYRKLEEMHQRCL-AAERSKDDLQLRLKTAENRIKQ--LEINSS 499
Cdd:COG4913 827 DGLPEYEERFKELLNeNSIEFVADLLSKLRRAIREIKEriDPLNDS 872
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
597-686 |
8.29e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.98 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958749344 597 LLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAE 676
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90
....*....|
gi 1958749344 677 ERAASASQQL 686
Cdd:COG4942 90 KEIAELRAEL 99
|
|
| |
