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Conserved domains on  [gi|1958655286|ref|XP_038957381|]
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coiled-coil domain-containing protein 186 isoform X1 [Rattus norvegicus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK03918 super family cl35229
DNA double-strand break repair ATPase Rad50;
226-734 4.00e-13

DNA double-strand break repair ATPase Rad50;


The actual alignment was detected with superfamily member PRK03918:

Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 73.56  E-value: 4.00e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 226 YLQQELTIQQLIKENKNHQELILN----ICSEKDNLREEL---KKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVA 298
Cdd:PRK03918  184 FIKRTENIEELIKEKEKELEEVLReineISSELPELREELeklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 299 QDVTAKNAIQQIH--KEMAQRMDQANKKCDEAR---QEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASK---ELEKN 370
Cdd:PRK03918  264 LEERIEELKKEIEelEEKVKELKELKEKAEEYIklsEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEkeeRLEEL 343
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 371 TNKIKQLSQEKGRLQ---QLYE---SKEGETTRL-ARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTK 443
Cdd:PRK03918  344 KKKLKELEKRLEELEerhELYEeakAKKEELERLkKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 444 LTQAKEEAEQIRQNCQDMIKTYQESEEiksNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLK------RTFKE 517
Cdd:PRK03918  424 LKKAIEELKKAKGKCPVCGRELTEEHR---KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkeselIKLKE 500
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 518 GMDELRTLRTKTKCLEDERL-RTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLIN 596
Cdd:PRK03918  501 LAEQLKELEEKLKKYNLEELeKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 597 DLQ-KDIEGSRKRESELllftEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEE 675
Cdd:PRK03918  581 ELGfESVEELEERLKEL----EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655286 676 VQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:PRK03918  657 SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
 
Name Accession Description Interval E-value
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
226-734 4.00e-13

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 73.56  E-value: 4.00e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 226 YLQQELTIQQLIKENKNHQELILN----ICSEKDNLREEL---KKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVA 298
Cdd:PRK03918  184 FIKRTENIEELIKEKEKELEEVLReineISSELPELREELeklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 299 QDVTAKNAIQQIH--KEMAQRMDQANKKCDEAR---QEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASK---ELEKN 370
Cdd:PRK03918  264 LEERIEELKKEIEelEEKVKELKELKEKAEEYIklsEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEkeeRLEEL 343
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 371 TNKIKQLSQEKGRLQ---QLYE---SKEGETTRL-ARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTK 443
Cdd:PRK03918  344 KKKLKELEKRLEELEerhELYEeakAKKEELERLkKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 444 LTQAKEEAEQIRQNCQDMIKTYQESEEiksNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLK------RTFKE 517
Cdd:PRK03918  424 LKKAIEELKKAKGKCPVCGRELTEEHR---KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkeselIKLKE 500
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 518 GMDELRTLRTKTKCLEDERL-RTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLIN 596
Cdd:PRK03918  501 LAEQLKELEEKLKKYNLEELeKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 597 DLQ-KDIEGSRKRESELllftEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEE 675
Cdd:PRK03918  581 ELGfESVEELEERLKEL----EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655286 676 VQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:PRK03918  657 SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
247-598 1.50e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 72.01  E-value: 1.50e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  247 ILNICSEKDNLREElkkrteteklhmntIKQLELRIEELNKEVKASKDQLvaqdvtaknaiqqihkemaqrmDQANKKCD 326
Cdd:TIGR02168  672 ILERRREIEELEEK--------------IEELEEKIAELEKALAELRKEL----------------------EELEEELE 715
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:TIGR02168  716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  407 EEMNShiikVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKtyQESEEIKSNELD-AKLRVTKG 485
Cdd:TIGR02168  796 EELKA----LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE--ELSEDIESLAAEiEELEELIE 869
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  486 ELEKQMQEKSDQLEMHHAKIKELEDLKRTFkegMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVK 565
Cdd:TIGR02168  870 ELESELEALLNERASLEEALALLRSELEEL---SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1958655286  566 AAQQLQEQLYSGKQ-----EIEHLKEEMESLNSLINDL 598
Cdd:TIGR02168  947 EEYSLTLEEAEALEnkiedDEEEARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
327-639 2.89e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 64.19  E-value: 2.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:COG1196   208 QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 407 EEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcqdmiktyQESEEIKSNELDAKLRVTKGE 486
Cdd:COG1196   288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--------LEELEEELEEAEEELEEAEAE 359
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 487 LEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKA 566
Cdd:COG1196   360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958655286 567 AQQLQEQLysgKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDS 639
Cdd:COG1196   440 EEEALEEA---AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
275-734 3.11e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 54.35  E-value: 3.11e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  275 IKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQA-NKKCDEARQ--EKEAMVMKYVRGEKEALDLRK 351
Cdd:pfam15921  262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArNQNSMYMRQlsDLESTVSQLRSELREAKRMYE 341
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  352 EK-ETLERKLRDASKELEKNTNKIKQLSQEKG----RLQQLYESKEGETTRLARETEKLK-----EEMNSHIIkvkwaqN 421
Cdd:pfam15921  342 DKiEELEKQLVLANSELTEARTERDQFSQESGnlddQLQKLLADLHKREKELSLEKEQNKrlwdrDTGNSITI------D 415
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  422 KLKAEVDSHKETKDKLKETttkLTQAKEEAEQIRQNCQDMIKTYQESEEiKSNELDAKLRVTKGELEKQMQEKSdqlemh 501
Cdd:pfam15921  416 HLRRELDDRNMEVQRLEAL---LKAMKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELT------ 485
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  502 hAKIKELEDLKRTFKegmDELRTLRTKTKCLEderlRTEDELSKYREIINRQKAEIQ---NVWDKVKAAQQ----LQEQL 574
Cdd:pfam15921  486 -AKKMTLESSERTVS---DLTASLQEKERAIE----ATNAEITKLRSRVDLKLQELQhlkNEGDHLRNVQTeceaLKLQM 557
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  575 YSGKQEIEHLKEEMESLNSLIND--------------LQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSL 640
Cdd:pfam15921  558 AEKDKVIEILRQQIENMTQLVGQhgrtagamqvekaqLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKL 637
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  641 SCSESQLQSQCEHMKQTNGDLESrllkeeelrkeevqslqaELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSK 720
Cdd:pfam15921  638 VNAGSERLRAVKDIKQERDQLLN------------------EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM 699
                          490
                   ....*....|....
gi 1958655286  721 QLQQARRKLDQTEN 734
Cdd:pfam15921  700 QLKSAQSELEQTRN 713
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
491-607 8.19e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 39.23  E-value: 8.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  491 MQEKSDQLEMHHAKIKEL-EDLKRTFKEGMDELRTLRTKTKCLEDERlrtEDELSKYREIINRQKAEIQNvwdKVKAAQQ 569
Cdd:smart00787 156 LKEDYKLLMKELELLNSIkPKLRDRKDALEEELRQLKQLEDELEDCD---PTELDRAKEKLKKLLQEIMI---KVKKLEE 229
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1958655286  570 LQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267
 
Name Accession Description Interval E-value
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
226-734 4.00e-13

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 73.56  E-value: 4.00e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 226 YLQQELTIQQLIKENKNHQELILN----ICSEKDNLREEL---KKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVA 298
Cdd:PRK03918  184 FIKRTENIEELIKEKEKELEEVLReineISSELPELREELeklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 299 QDVTAKNAIQQIH--KEMAQRMDQANKKCDEAR---QEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASK---ELEKN 370
Cdd:PRK03918  264 LEERIEELKKEIEelEEKVKELKELKEKAEEYIklsEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEkeeRLEEL 343
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 371 TNKIKQLSQEKGRLQ---QLYE---SKEGETTRL-ARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTK 443
Cdd:PRK03918  344 KKKLKELEKRLEELEerhELYEeakAKKEELERLkKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 444 LTQAKEEAEQIRQNCQDMIKTYQESEEiksNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLK------RTFKE 517
Cdd:PRK03918  424 LKKAIEELKKAKGKCPVCGRELTEEHR---KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkeselIKLKE 500
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 518 GMDELRTLRTKTKCLEDERL-RTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLIN 596
Cdd:PRK03918  501 LAEQLKELEEKLKKYNLEELeKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 597 DLQ-KDIEGSRKRESELllftEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEE 675
Cdd:PRK03918  581 ELGfESVEELEERLKEL----EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655286 676 VQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:PRK03918  657 SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
PTZ00121 PTZ00121
MAEBL; Provisional
252-718 1.33e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 72.10  E-value: 1.33e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  252 SEKDNLREELKKRTETEKLHMNTIK----QLELRIEELNKEVKASKDQLVAQDVTAKnAIQQIHKEMAQRMDQANKKCDE 327
Cdd:PTZ00121  1311 AEEAKKADEAKKKAEEAKKKADAAKkkaeEAKKAAEAAKAEAEAAADEAEAAEEKAE-AAEKKKEEAKKKADAAKKKAEE 1389
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  328 ARQEKEAM------------VMKYVRGEKEALDLRKEKETlERKLRDASKELE--KNTNKIKQLSQEKGRLQQLyeSKEG 393
Cdd:PTZ00121  1390 KKKADEAKkkaeedkkkadeLKKAAAAKKKADEAKKKAEE-KKKADEAKKKAEeaKKADEAKKKAEEAKKAEEA--KKKA 1466
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  394 ETTRLARETEKLKEEM-NSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEI- 471
Cdd:PTZ00121  1467 EEAKKADEAKKKAEEAkKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKk 1546
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  472 KSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDE-------LS 544
Cdd:PTZ00121  1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEakikaeeLK 1626
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  545 KYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK------RESELLLFTEK 618
Cdd:PTZ00121  1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKaaealkKEAEEAKKAEE 1706
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  619 LTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQtngdlESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQV- 697
Cdd:PTZ00121  1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK-----KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVi 1781
                          490       500
                   ....*....|....*....|..
gi 1958655286  698 -EELKDELVTQRRKHASNVKDL 718
Cdd:PTZ00121  1782 eEELDEEDEKRRMEVDKKIKDI 1803
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
247-598 1.50e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 72.01  E-value: 1.50e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  247 ILNICSEKDNLREElkkrteteklhmntIKQLELRIEELNKEVKASKDQLvaqdvtaknaiqqihkemaqrmDQANKKCD 326
Cdd:TIGR02168  672 ILERRREIEELEEK--------------IEELEEKIAELEKALAELRKEL----------------------EELEEELE 715
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:TIGR02168  716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  407 EEMNShiikVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKtyQESEEIKSNELD-AKLRVTKG 485
Cdd:TIGR02168  796 EELKA----LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE--ELSEDIESLAAEiEELEELIE 869
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  486 ELEKQMQEKSDQLEMHHAKIKELEDLKRTFkegMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVK 565
Cdd:TIGR02168  870 ELESELEALLNERASLEEALALLRSELEEL---SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1958655286  566 AAQQLQEQLYSGKQ-----EIEHLKEEMESLNSLINDL 598
Cdd:TIGR02168  947 EEYSLTLEEAEALEnkiedDEEEARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
400-734 1.39e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 68.54  E-value: 1.39e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  400 RETEKLKEEMNSHIIKVKWAQNKLKAEVDS----------HKETKDKLKET-----TTKLTQAKEEAEQIRQNCQDMIKT 464
Cdd:TIGR02168  175 KETERKLERTRENLDRLEDILNELERQLKSlerqaekaerYKELKAELRELelallVLRLEELREELEELQEELKEAEEE 254
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  465 YQESEEiKSNELDAKL---RVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEgmdELRTLRTKTKCLEDERLRTED 541
Cdd:TIGR02168  255 LEELTA-ELQELEEKLeelRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE---RLANLERQLEELEAQLEELES 330
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  542 ELSKYREIINRQKAEIQnvwdkvkaaqQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTS 621
Cdd:TIGR02168  331 KLDELAEELAELEEKLE----------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  622 KNAQLQSEASSLQAQVDSLSCSESQLqsqcehmkqtngdLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELK 701
Cdd:TIGR02168  401 EIERLEARLERLEDRRERLQQEIEEL-------------LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
                          330       340       350
                   ....*....|....*....|....*....|...
gi 1958655286  702 DELVTQRRKhasnVKDLSKQLQQARRKLDQTEN 734
Cdd:TIGR02168  468 EELEEAEQA----LDAAERELAQLQARLDSLER 496
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
225-733 2.64e-11

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 67.78  E-value: 2.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 225 RYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLhmntIKQLELRIEELNKEVKASKDQL--VAQDVT 302
Cdd:PRK03918  149 KVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEEL----IKEKEKELEEVLREINEISSELpeLREELE 224
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 303 AKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKlrdaskelEKNTNKIKQLSQEKG 382
Cdd:PRK03918  225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYI 296
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 383 RLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKlKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMI 462
Cdd:PRK03918  297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 463 KTYQESEEIKSNELDAKLRvtkgELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRtlRTKTKCLEDERLRTEDE 542
Cdd:PRK03918  376 RLKKRLTGLTPEKLEKELE----ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK--KAKGKCPVCGRELTEEH 449
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 543 lskYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIE-----------------HLKEEMESLNSL-INDLQKDIEG 604
Cdd:PRK03918  450 ---RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlkkeseliklkelaeQLKELEEKLKKYnLEELEKKAEE 526
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 605 SRKRESELLlfteKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQA--- 681
Cdd:PRK03918  527 YEKLKEKLI----KLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyn 602
                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655286 682 ---ELSAVQTEARALSTQVEELKDELVTQRRKHA---SNVKDLSKQLQQARRKLDQTE 733
Cdd:PRK03918  603 eylELKDAEKELEREEKELKKLEEELDKAFEELAeteKRLEELRKELEELEKKYSEEE 660
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
183-832 3.89e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.39  E-value: 3.89e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  183 DDLLGEIESEL----LSAELAEE-HQVPNGVNKGEHALALFE-KCVHSRYLQQELTIQQLIKENKNH-------QELILN 249
Cdd:TIGR02168  192 EDILNELERQLksleRQAEKAERyKELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELtaelqelEEKLEE 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  250 ICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLV------AQDVTAKNAIQQIHKEMAQRMDQANK 323
Cdd:TIGR02168  272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEeleaqlEELESKLDELAEELAELEEKLEELKE 351
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  324 KCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKI----KQLSQEKGRLQQLYESKEGETTRLA 399
Cdd:TIGR02168  352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIerleARLERLEDRRERLQQEIEELLKKLE 431
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  400 R-ETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCqDMIKTYQESEEIKSNELDA 478
Cdd:TIGR02168  432 EaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL-DSLERLQENLEGFSEGVKA 510
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  479 -----------------KLRVTKG---ELEKQMQEKSDQLEMHHAK--------IKELEDLKRTFKE----GMDELRTLR 526
Cdd:TIGR02168  511 llknqsglsgilgvlseLISVDEGyeaAIEAALGGRLQAVVVENLNaakkaiafLKQNELGRVTFLPldsiKGTEIQGND 590
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  527 TKTKCLEDERLRTEDELSKYREIINRQKAEIQN---VWDKVKAAQQLQEQLYSG-------------------------- 577
Cdd:TIGR02168  591 REILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlVVDDLDNALELAKKLRPGyrivtldgdlvrpggvitggsaktns 670
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  578 -----KQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCE 652
Cdd:TIGR02168  671 silerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  653 HMKQTNGDLEsrllKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHAS---NVKDLSKQLQQARRKL 729
Cdd:TIGR02168  751 QLSKELTELE----AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElraELTLLNEEAANLRERL 826
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  730 DQTENGNYDK-----DVSSMGSRSSSSGSLNARSSAEDRSPENTSSSVAVDNfpEVDKAMLIDRIVRLQKAHARKNEKIE 804
Cdd:TIGR02168  827 ESLERRIAATerrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL--LNERASLEEALALLRSELEELSEELR 904
                          730       740
                   ....*....|....*....|....*...
gi 1958655286  805 FMEDHIKQLVEEIRKKTKIIQSYVLREE 832
Cdd:TIGR02168  905 ELESKRSELRRELEELREKLAQLELRLE 932
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
233-517 2.27e-10

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 64.66  E-value: 2.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 233 IQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIH- 311
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSv 451
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 312 -----KEMAQRMDQANKKCDE-------ARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQ 379
Cdd:TIGR04523 452 keliiKNLDNTRESLETQLKVlsrsinkIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 380 EKGRlqqlyesKEGETTRLARETEKLKEEMNShiikvkwaqNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQ 459
Cdd:TIGR04523 532 EKKE-------KESKISDLEDELNKDDFELKK---------ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958655286 460 DMIKTY---QESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKE 517
Cdd:TIGR04523 596 KEKKDLikeIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
233-656 2.27e-10

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 64.66  E-value: 2.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 233 IQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQlvaqdvtaknAIQQIHK 312
Cdd:TIGR04523 241 INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ----------KEQDWNK 310
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 313 EMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKE 392
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 393 GETTRLARE---TEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcqdmIKTYQESE 469
Cdd:TIGR04523 391 SQINDLESKiqnQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN----LDNTRESL 466
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 470 EIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREI 549
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 550 INRQKAEIQNvwdkvkaaQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:TIGR04523 547 LNKDDFELKK--------ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
                         410       420
                  ....*....|....*....|....*..
gi 1958655286 630 ASSLQAQVDSLSCSESQLQSQCEHMKQ 656
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQ 645
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
327-639 2.89e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 64.19  E-value: 2.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:COG1196   208 QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 407 EEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcqdmiktyQESEEIKSNELDAKLRVTKGE 486
Cdd:COG1196   288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--------LEELEEELEEAEEELEEAEAE 359
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 487 LEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKA 566
Cdd:COG1196   360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958655286 567 AQQLQEQLysgKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDS 639
Cdd:COG1196   440 EEEALEEA---AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
352-702 5.99e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 63.55  E-value: 5.99e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  352 EKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEgETTRLARETEKLKEEMNSHIIKVKWAQ-NKLKAEVDSH 430
Cdd:TIGR02169  171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELLKEKEALERQkEAIERQLASL 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  431 KETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELED 510
Cdd:TIGR02169  250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  511 LKRTFKEGMDELRtlrtktKCLEDERLRTE---DELSKYREIINRQKAEIQnvwDKVKAAQQLQEQLYSGKQEIEHLKEE 587
Cdd:TIGR02169  330 EIDKLLAEIEELE------REIEEERKRRDkltEEYAELKEELEDLRAELE---EVDKEFAETRDELKDYREKLEKLKRE 400
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  588 MESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESrllk 667
Cdd:TIGR02169  401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE---- 476
                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1958655286  668 EEELRKEEVQSLQAELSAVQTEARALSTQVEELKD 702
Cdd:TIGR02169  477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
PTZ00121 PTZ00121
MAEBL; Provisional
259-820 6.11e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 63.62  E-value: 6.11e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  259 EELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMK 338
Cdd:PTZ00121  1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  339 YVRGE--KEALDLRKEKETleRKLRDASK-ELEKNTNKIKQLSQEKGRLQQLYESKEgETTRLARETEKLKEEMNShiiK 415
Cdd:PTZ00121  1271 AIKAEeaRKADELKKAEEK--KKADEAKKaEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAAKKKAEEAKK---A 1344
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  416 VKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKtyqeSEEIKSNELDAKLRVTKGELEKQMQEKS 495
Cdd:PTZ00121  1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK----ADEAKKKAEEDKKKADELKKAAAAKKKA 1420
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  496 DQLEMHHAKIKELEDLKRTFKEG--MDELRTLRTKTKCLEDERLRTEDElskyreiinRQKAEIQNVWDKVKAAQQLQEQ 573
Cdd:PTZ00121  1421 DEAKKKAEEKKKADEAKKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEA---------KKADEAKKKAEEAKKADEAKKK 1491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  574 LYSGKQEIEHLKEEMESLNSLinDLQKDIEGSRKREsELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEH 653
Cdd:PTZ00121  1492 AEEAKKKADEAKKAAEAKKKA--DEAKKAEEAKKAD-EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  654 MKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQV-----EELKDELVTQRRKHASNVKDLSKQLQQARRK 728
Cdd:PTZ00121  1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  729 LDQTENGNYDKDVSSMGSRSSSSGslNARSSAEDRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMED 808
Cdd:PTZ00121  1649 AEELKKAEEENKIKAAEEAKKAEE--DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
                          570
                   ....*....|..
gi 1958655286  809 HIKQLVEEIRKK 820
Cdd:PTZ00121  1727 ENKIKAEEAKKE 1738
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
275-603 7.28e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 63.16  E-value: 7.28e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  275 IKQLELRIEELNKEVKASKDQLvaqdvtaknAIQQIHKEMAQRMDQANKKCDEARQ-----EKEAMVMKYVRGEKEALDL 349
Cdd:TIGR02169  179 LEEVEENIERLDLIIDEKRQQL---------ERLRREREKAERYQALLKEKREYEGyellkEKEALERQKEAIERQLASL 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  350 RKEKETLERKLRDASKE-------LEKNTNKIKQL-SQEKGRLQQLYESKEGETTRLARETEKLKEEMNshiiKVKWAQN 421
Cdd:TIGR02169  250 EEELEKLTEEISELEKRleeieqlLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELE----DAEERLA 325
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  422 KLKAEVDSHKETKDKLKEtttKLTQAKEEAEQIRQNCQDMIKTYQESEEiKSNELDAKLRVTKGELeKQMQEKSDQLemh 501
Cdd:TIGR02169  326 KLEAEIDKLLAEIEELER---EIEEERKRRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDEL-KDYREKLEKL--- 397
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  502 hakIKELEDLKRTFKEGMDELRTLRTKtkcLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEI 581
Cdd:TIGR02169  398 ---KREINELKRELDRLQEELQRLSEE---LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
                          330       340
                   ....*....|....*....|..
gi 1958655286  582 EHLKEEMESLNSLINDLQKDIE 603
Cdd:TIGR02169  472 YDLKEEYDRVEKELSKLQRELA 493
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
431-731 9.84e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.65  E-value: 9.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 431 KETKDKLKETTTKLTQA--------------KEEAEQIRQNcqdmiKTYQESEEIKSNEL----DAKLRVTKGELEKQMQ 492
Cdd:COG1196   175 EEAERKLEATEENLERLedilgelerqleplERQAEKAERY-----RELKEELKELEAELlllkLRELEAELEELEAELE 249
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 493 EKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKtkcLEDERLRTEDELSKYREIINRQKAEIQNVwdkVKAAQQLQE 572
Cdd:COG1196   250 ELEAELEELEAELAELEAELEELRLELEELELELEE---AQAEEYELLAELARLEQDIARLEERRREL---EERLEELEE 323
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 573 QLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCE 652
Cdd:COG1196   324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655286 653 HMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKdELVTQRRKHASNVKDLSKQLQQARRKLDQ 731
Cdd:COG1196   404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA-ELEEEEEALLELLAELLEEAALLEAALAE 481
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
276-640 1.28e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 62.39  E-value: 1.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  276 KQLELRIEELNKEVKASKDQLvaqdvtakNAIQQIHKEMAQRMDQANKKCDEARQEKEAMvmkyvrgEKEALDLRKEKET 355
Cdd:TIGR02169  670 RSEPAELQRLRERLEGLKREL--------SSLQSELRRIENRLDELSQELSDASRKIGEI-------EKEIEQLEQEEEK 734
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  356 LERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQ-NKLKAEVDSHKETK 434
Cdd:TIGR02169  735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARL 814
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  435 DKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDaklrvtkgELEKQMQEKSDQLEMHHAKIKELEDLKRT 514
Cdd:TIGR02169  815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE--------NLNGKKEELEEELEELEAALRDLESRLGD 886
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  515 FKEGMDElrtLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSG----------KQEIEHL 584
Cdd:TIGR02169  887 LKKERDE---LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsledvQAELQRV 963
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655286  585 KEEMESLNSLINDLQKDIEGSRKRESElllftekLTSKNAQLQSEASSLQAQVDSL 640
Cdd:TIGR02169  964 EEEIRALEPVNMLAIQEYEEVLKRLDE-------LKEKRAKLEEERKAILERIEEY 1012
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
228-733 3.10e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 3.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAI 307
Cdd:COG1196   250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 308 QQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQL 387
Cdd:COG1196   330 EEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 388 YESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRqncqdmiktyQE 467
Cdd:COG1196   409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE----------AA 478
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 468 SEEIKSNELDAKLRVtkgELEKQMQEKSDQLEMHHAKIKELEDLKRtfkeGMDELRTLRTKTKCLEDERLRTEDELSKYR 547
Cdd:COG1196   479 LAELLEELAEAAARL---LLLLEAEADYEGFLEGVKAALLLAGLRG----LAGAVAVLIGVEAAYEAALEAALAAALQNI 551
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 548 EIINRQKAEIQNVWDKVKAA-----QQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSK 622
Cdd:COG1196   552 VVEDDEVAAAAIEYLKAAKAgratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 623 NAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKD 702
Cdd:COG1196   632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
                         490       500       510
                  ....*....|....*....|....*....|.
gi 1958655286 703 ELVTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:COG1196   712 AEEERLEEELEEEALEEQLEAEREELLEELL 742
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
229-734 5.09e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 60.03  E-value: 5.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 229 QELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNaiq 308
Cdd:TIGR04523  31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK--- 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 309 qIHKEMAQRMDQANKKcdearqekeamvmkyvrgEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLY 388
Cdd:TIGR04523 108 -INSEIKNDKEQKNKL------------------EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQK 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 389 ESKEGETTRLARETEKLKEEMNshiiKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQES 468
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNID----KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 469 EEIKSNeLDAKLRVTKGELEK---QMQEKSDQLEMHHAKIKELEDLKRTFKEGMDEL---------RTLRTKTKCLEDER 536
Cdd:TIGR04523 245 TTEISN-TQTQLNQLKDEQNKikkQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnnqkeqdwnKELKSELKNQEKKL 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 537 LRTEDELSKYREIINRQKAEIQN----VWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESEL 612
Cdd:TIGR04523 324 EEIQNQISQNNKIISQLNEQISQlkkeLTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 613 LLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARA 692
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 1958655286 693 LSTQVEELK------DELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:TIGR04523 484 LEQKQKELKskekelKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
224-612 8.55e-09

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 59.31  E-value: 8.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 224 SRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHmNTIKQLELRIEELNK---------------E 288
Cdd:PRK03918  317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKrltgltpeklekeleE 395
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 289 VKASKDQLVAQDVTAKNAIQQIHKEMAQRMD------QANKKCDEARQE-----KEAMVMKYVRGEKEALDLRKEKETLE 357
Cdd:PRK03918  396 LEKAKEEIEEEISKITARIGELKKEIKELKKaieelkKAKGKCPVCGRElteehRKELLEEYTAELKRIEKELKEIEEKE 475
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 358 RKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEG-------ETTRLARETEKLKEEMnshiIKVKWAQNKLKAEVDSH 430
Cdd:PRK03918  476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKlkkynleELEKKAEEYEKLKEKL----IKLKGEIKSLKKELEKL 551
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 431 KETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDA------KLRVTKGELEKQMQEKSDQLEMHHAK 504
Cdd:PRK03918  552 EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKA 631
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 505 IKELEDLKRTFKEGMDELRTLRTKTKclEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHL 584
Cdd:PRK03918  632 FEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
                         410       420
                  ....*....|....*....|....*...
gi 1958655286 585 KEEMESLNSLINDLQKDIEGSRKRESEL 612
Cdd:PRK03918  710 KKELEKLEKALERVEELREKVKKYKALL 737
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
222-681 1.17e-08

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 58.88  E-value: 1.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 222 VHSRYLQQELTIQQLIKENKNHQELILNIcSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDV 301
Cdd:TIGR04523 192 IKNKLLKLELLLSNLKKKIQKNKSLESQI-SELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 302 TAKNAIQQIHKEMAQRMDQANK---KCDEARQEKEAMVMKyvrgekealDLRKEKETLERKLRDASKELEKNTNKIKQLS 378
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQlksEISDLNNQKEQDWNK---------ELKSELKNQEKKLEEIQNQISQNNKIISQLN 341
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 379 QEKGRLQQLYESKEGETTRLARETEKLKEEMNshiikvkwaqnKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNC 458
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIE-----------KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQK 410
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 459 QDMIKTYQESEEIKSNELDaKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDEL----RTLRTKTKCLED 534
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIE-RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsrsiNKIKQNLEQKQK 489
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 535 ERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIE----HLKEEMESLNS---------LINDLQKD 601
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKEskisDLEDELNKDDFelkkenlekEIDEKNKE 569
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 602 IEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQA 681
Cdd:TIGR04523 570 IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
281-729 1.19e-08

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 59.01  E-value: 1.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 281 RIEELNKEVKASKDQlvaqdVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMvmkyvRGEKEALDLRKEKETLERKL 360
Cdd:COG4717    72 ELKELEEELKEAEEK-----EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPLYQELEALEAEL 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 361 RDASKELEKNTNKIKQLSQEKGRLQQLyeskegeTTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKET 440
Cdd:COG4717   142 AELPERLEELEERLEELRELEEELEEL-------EAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 441 TTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIK--------ELEDLK 512
Cdd:COG4717   215 LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFlvlgllalLFLLLA 294
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 513 RTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLN 592
Cdd:COG4717   295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAA 374
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 593 SLINDLQKDIEGSRKRESELLLF---TEKLTSKNAQLQSEASSLQAQVDSLSCS--ESQLQSQCEHMKQTNGDLEsrllk 667
Cdd:COG4717   375 LLAEAGVEDEEELRAALEQAEEYqelKEELEELEEQLEELLGELEELLEALDEEelEEELEELEEELEELEEELE----- 449
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958655286 668 eeeLRKEEVQSLQAELSAVQTEAR--ALSTQVEELKDELVTQRRKHASNVKdLSKQLQQARRKL 729
Cdd:COG4717   450 ---ELREELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALKL-ALELLEEAREEY 509
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
262-920 9.89e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 56.22  E-value: 9.89e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  262 KKRTETEKLHMNTIKQLElRIEELNKEVKASKDQLVAQDVTA------KNAIQQIHKEM-AQRMDQANKKCDEARQEKEA 334
Cdd:TIGR02168  172 ERRKETERKLERTRENLD-RLEDILNELERQLKSLERQAEKAerykelKAELRELELALlVLRLEELREELEELQEELKE 250
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  335 MVMKYVRGEKEA-------LDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKG-------RLQQLYESKEGETTRLAR 400
Cdd:TIGR02168  251 AEEELEELTAELqeleeklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQilrerlaNLERQLEELEAQLEELES 330
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  401 ETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcQDMIKTYQESEEIKSNELDAKL 480
Cdd:TIGR02168  331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK-VAQLELQIASLNNEIERLEARL 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  481 RVTKGELEKQMQEKSDQLEMHHAKikELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNV 560
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  561 WDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLL----FTEKLTSKNAQLQSEASSLQAQ 636
Cdd:TIGR02168  488 QARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggRLQAVVVENLNAAKKAIAFLKQ 567
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  637 VDSL--------SCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAV---------------------- 686
Cdd:TIGR02168  568 NELGrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgyri 647
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  687 -------------------QTEARALSTQVEelKDELVTQRRKHASNVKDLSKQLQQARRKLDQTENGNYDKDVSSMGSR 747
Cdd:TIGR02168  648 vtldgdlvrpggvitggsaKTNSSILERRRE--IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  748 SSSSGSLNARSSAEDRSpENTSSSVAVDNFPEVDkamLIDRIVRLQKAHARKNEKIEFMEDHIKQLVEEIRKktkiiqsy 827
Cdd:TIGR02168  726 RQISALRKDLARLEAEV-EQLEERIAQLSKELTE---LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ-------- 793
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  828 vLREESGTLSSEASDFNKVH--LSRRGGIMASLYTSHPADSGLTlELSLEINRKLQAVLEDTLLKNITLKENLQTLGTEI 905
Cdd:TIGR02168  794 -LKEELKALREALDELRAELtlLNEEAANLRERLESLERRIAAT-ERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
                          730
                   ....*....|....*
gi 1958655286  906 ERliKHQHELEQRTK 920
Cdd:TIGR02168  872 ES--ELEALLNERAS 884
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
390-704 1.11e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.83  E-value: 1.11e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  390 SKEGETTRLARETE--KLKEEMNSHIIKVKWAQNKLKaevdshkETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQ- 466
Cdd:TIGR02168  665 SAKTNSSILERRREieELEEKIEELEEKIAELEKALA-------ELRKELEELEEELEQLRKELEELSRQISALRKDLAr 737
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  467 -ESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELED----LKRTFKEGMDELRTLRTKTKCLEDERLRTED 541
Cdd:TIGR02168  738 lEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAeieeLEAQIEQLKEELKALREALDELRAELTLLNE 817
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  542 EL----SKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTE 617
Cdd:TIGR02168  818 EAanlrERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  618 KLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQV 697
Cdd:TIGR02168  898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977

                   ....*..
gi 1958655286  698 EELKDEL 704
Cdd:TIGR02168  978 ENKIKEL 984
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
275-734 3.11e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 54.35  E-value: 3.11e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  275 IKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQA-NKKCDEARQ--EKEAMVMKYVRGEKEALDLRK 351
Cdd:pfam15921  262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArNQNSMYMRQlsDLESTVSQLRSELREAKRMYE 341
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  352 EK-ETLERKLRDASKELEKNTNKIKQLSQEKG----RLQQLYESKEGETTRLARETEKLK-----EEMNSHIIkvkwaqN 421
Cdd:pfam15921  342 DKiEELEKQLVLANSELTEARTERDQFSQESGnlddQLQKLLADLHKREKELSLEKEQNKrlwdrDTGNSITI------D 415
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  422 KLKAEVDSHKETKDKLKETttkLTQAKEEAEQIRQNCQDMIKTYQESEEiKSNELDAKLRVTKGELEKQMQEKSdqlemh 501
Cdd:pfam15921  416 HLRRELDDRNMEVQRLEAL---LKAMKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELT------ 485
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  502 hAKIKELEDLKRTFKegmDELRTLRTKTKCLEderlRTEDELSKYREIINRQKAEIQ---NVWDKVKAAQQ----LQEQL 574
Cdd:pfam15921  486 -AKKMTLESSERTVS---DLTASLQEKERAIE----ATNAEITKLRSRVDLKLQELQhlkNEGDHLRNVQTeceaLKLQM 557
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  575 YSGKQEIEHLKEEMESLNSLIND--------------LQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSL 640
Cdd:pfam15921  558 AEKDKVIEILRQQIENMTQLVGQhgrtagamqvekaqLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKL 637
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  641 SCSESQLQSQCEHMKQTNGDLESrllkeeelrkeevqslqaELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSK 720
Cdd:pfam15921  638 VNAGSERLRAVKDIKQERDQLLN------------------EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM 699
                          490
                   ....*....|....
gi 1958655286  721 QLQQARRKLDQTEN 734
Cdd:pfam15921  700 QLKSAQSELEQTRN 713
PTZ00121 PTZ00121
MAEBL; Provisional
253-629 6.10e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.61  E-value: 6.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  253 EKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEK 332
Cdd:PTZ00121  1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAE 1191
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  333 EAMVMKYVRGEKEAldlRKEKEtlERKLRDASK-ELEKNTNKIKQLSQEKGRLQqlyESKEGETTRLARETEKLKEEMNS 411
Cdd:PTZ00121  1192 ELRKAEDARKAEAA---RKAEE--ERKAEEARKaEDAKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRKFEEARMA 1263
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  412 HIIKVKWA-QNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKtyqeSEEIKSNELDAKLRVTKGELEKQ 490
Cdd:PTZ00121  1264 HFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK----ADEAKKKAEEAKKKADAAKKKAE 1339
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  491 MQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLE----DERLRTEDELSKYREIINRQKAEIQNVWDKVKA 566
Cdd:PTZ00121  1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakkkAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958655286  567 AQQLQEQLYSGKQEIEHLKEEMESLNSliNDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:PTZ00121  1420 ADEAKKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
46 PHA02562
endonuclease subunit; Provisional
271-517 6.37e-07

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 53.09  E-value: 6.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 271 HMNTIkqLELRIEELNKEVKAskdqlvaQDVTAKNAIQQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVrgeKEALDLR 350
Cdd:PHA02562  167 EMDKL--NKDKIRELNQQIQT-------LDMKIDHIQQQI-KTYNKNIEEQRKKNGENIARKQNKYDELV---EEAKTIK 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 351 KEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGEttrlaretEKLKEEmnsHIIKVKWAQNkLKAEVDSH 430
Cdd:PHA02562  234 AEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV--------IKMYEK---GGVCPTCTQQ-ISEGPDRI 301
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 431 KETKDKLKETTTKLTQAK---EEAEQIRQNCQDMIKTYQE-SEEIKSNELDAKLRVTKG-ELEKQMQEKSDQLEMHHAKI 505
Cdd:PHA02562  302 TKIKDKLKELQHSLEKLDtaiDELEEIMDEFNEQSKKLLElKNKISTNKQSLITLVDKAkKVKAAIEELQAEFVDNAEEL 381
                         250
                  ....*....|...
gi 1958655286 506 KEL-EDLKRTFKE 517
Cdd:PHA02562  382 AKLqDELDKIVKT 394
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
252-607 7.50e-07

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 53.52  E-value: 7.50e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  252 SEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKdqlvaqdvtAKNAIQQIhKEMAQRMDQANKKCDEARQE 331
Cdd:TIGR01612 1318 SDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNK---------IKKIIDEV-KEYTKEIEENNKNIKDELDK 1387
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  332 KEAMVMKYvrgeKEALDLRKEKETLERKLRDasKELEKNTNKIKQ-----LSQEKGRLQQLYESKE-GETTRLARETEKL 405
Cdd:TIGR01612 1388 SEKLIKKI----KDDINLEECKSKIESTLDD--KDIDECIKKIKElknhiLSEESNIDTYFKNADEnNENVLLLFKNIEM 1461
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  406 KEEMNSHIIKVK---------WAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEeiksneL 476
Cdd:TIGR01612 1462 ADNKSQHILKIKkdnatndhdFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALA------I 1535
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  477 DAKLRVTKGELEKQMQEKSD-------QLEMHHAKIKELEDLKRTFKEGMDE--------------LRTLRTKTKCLEDE 535
Cdd:TIGR01612 1536 KNKFAKTKKDSEIIIKEIKDahkkfilEAEKSEQKIKEIKKEKFRIEDDAAKndksnkaaidiqlsLENFENKFLKISDI 1615
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  536 RLRTEDELSKYREI--------INRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:TIGR01612 1616 KKKINDCLKETESIekkissfsIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKK 1695
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
275-735 9.10e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.00  E-value: 9.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  275 IKQLElRIEELNKEVKASKDQLVAQDvTAKNAIQqiHKEMAQRMDQANKKCDEARQEKEamvmkyvRGEKEALDLRKEKE 354
Cdd:COG4913    251 IELLE-PIRELAERYAAARERLAELE-YLRAALR--LWFAQRRLELLEAELEELRAELA-------RLEAELERLEARLD 319
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  355 TLERKLRDASKELEKN-TNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKET 433
Cdd:COG4913    320 ALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEE 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  434 KDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESeeiKSNeLDAKLRVTKGELEKQMQEKSDQLEMhhakIKELEDLK- 512
Cdd:COG4913    400 LEALEEALAEAEAALRDLRRELRELEAEIASLERR---KSN-IPARLLALRDALAEALGLDEAELPF----VGELIEVRp 471
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  513 -------------RTFK-----------------EGMD---ELRTLRTKTKCLEDERLRTED---------ELSKYREII 550
Cdd:COG4913    472 eeerwrgaiervlGGFAltllvppehyaaalrwvNRLHlrgRLVYERVRTGLPDPERPRLDPdslagkldfKPHPFRAWL 551
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  551 NRQKAEIQNVWdKVKAAQQLQE---------QLYSG----------------------KQEIEHLKEEMESLNSLINDLQ 599
Cdd:COG4913    552 EAELGRRFDYV-CVDSPEELRRhpraitragQVKGNgtrhekddrrrirsryvlgfdnRAKLAALEAELAELEEELAEAE 630
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  600 KDIEGSRKREselllftEKLTSKNAQLQSEASSLQAQVDSLSCSE--SQLQSQCEHMKQTNGDLESrllkeeelrkeevq 677
Cdd:COG4913    631 ERLEALEAEL-------DALQERREALQRLAEYSWDEIDVASAEReiAELEAELERLDASSDDLAA-------------- 689
                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655286  678 sLQAELSAVQTEARALstqvEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTENG 735
Cdd:COG4913    690 -LEEQLEELEAELEEL----EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
273-493 1.62e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.30  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 273 NTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIhKEMAQRMDQANKKCDEARQEKEAMvmkyvrgEKEALDLRKE 352
Cdd:COG4942    20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-AALERRIAALARRIRALEQELAAL-------EAELAELEKE 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 353 KETLERKLRDASKELEKNTNKIKQLSQEkGRLQQLYESKE-GETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHK 431
Cdd:COG4942    92 IAELRAELEAQKEELAELLRALYRLGRQ-PPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958655286 432 ETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKgELEKQMQE 493
Cdd:COG4942   171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-ELEALIAR 231
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
306-509 1.77e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.30  E-value: 1.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 306 AIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQ 385
Cdd:COG4942    17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 386 QLYESKEGETTRLARETEKLK--------------EEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEA 451
Cdd:COG4942    97 AELEAQKEELAELLRALYRLGrqpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655286 452 EQIRQNCQDMIKTYQESEEIKsNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELE 509
Cdd:COG4942   177 EALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
445-712 2.08e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.99  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  445 TQAKEEAEQIRQNCQDM------IKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEG 518
Cdd:TIGR02169  670 RSEPAELQRLRERLEGLkrelssLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  519 MDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKA--------EIQNVWDKVK--------AAQQLQEQLYSGKQEIE 582
Cdd:TIGR02169  750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlshsripEIQAELSKLEeevsrieaRLREIEQKLNRLTLEKE 829
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  583 HLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLE 662
Cdd:TIGR02169  830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1958655286  663 S---RLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHA 712
Cdd:TIGR02169  910 AqieKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
490-729 2.48e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.45  E-value: 2.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  490 QMQEKSDQLEMHHAKIKELEDLKRTFkegmDELRTLRTKTKCLEDERlRTEDELSKYREIINRQKAEIQNVWdkVKAAQQ 569
Cdd:COG4913    216 YMLEEPDTFEAADALVEHFDDLERAH----EALEDAREQIELLEPIR-ELAERYAAARERLAELEYLRAALR--LWFAQR 288
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  570 LQEQLysgKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLftEKLTSKN---AQLQSEASSLQAQVDSLSCSESQ 646
Cdd:COG4913    289 RLELL---EAELEELRAELARLEAELERLEARLDALREELDELEA--QIRGNGGdrlEQLEREIERLERELEERERRRAR 363
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  647 LQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHAS---NVKDLSKQLQ 723
Cdd:COG4913    364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASlerRKSNIPARLL 443

                   ....*.
gi 1958655286  724 QARRKL 729
Cdd:COG4913    444 ALRDAL 449
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
227-409 3.07e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 3.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 227 LQQELtiQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAqdvtAKNA 306
Cdd:COG4942    25 AEAEL--EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE----LRAE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 307 IQQIHKEMAQRMDQANKK------------CDEARQEKEAMVMKYVRGE--KEALDLRKEKETLERKLRDASKELEKNTN 372
Cdd:COG4942    99 LEAQKEELAELLRALYRLgrqpplalllspEDFLDAVRRLQYLKYLAPArrEQAEELRADLAELAALRAELEAERAELEA 178
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1958655286 373 KIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEM 409
Cdd:COG4942   179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
533-773 3.56e-06

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 50.21  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 533 EDERLRTEDELSKYREIINRQKAEIQNVWDKVkaaQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESEL 612
Cdd:COG3883    15 DPQIQAKQKELSELQAELEAAQAELDALQAEL---EELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 613 L--LFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLEsrllkeeelrkeEVQSLQAELSAVQTEA 690
Cdd:COG3883    92 AraLYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKA------------ELEAKKAELEAKLAEL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 691 RALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTENGNYDKDVSSMGSRSSSSGSLNARSSAEDRSPENTSS 770
Cdd:COG3883   160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239

                  ...
gi 1958655286 771 SVA 773
Cdd:COG3883   240 AAA 242
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
348-592 4.41e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.68  E-value: 4.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  348 DLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGE--TTRLARETEKLKEEM------NSHIIKVKWA 419
Cdd:COG4913    614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREIAELEAELerldasSDDLAALEEQ 693
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  420 QNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNE-LDAKLRVTKGE-----LEKQMQE 493
Cdd:COG4913    694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAlLEERFAAALGDavereLRENLEE 773
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  494 KSDQL-EMHHAKIKELEDLKRTFK--------------EGMDELRTLRTKtkcLEDERL-RTEDELSKYreiinRQKAEI 557
Cdd:COG4913    774 RIDALrARLNRAEEELERAMRAFNrewpaetadldadlESLPEYLALLDR---LEEDGLpEYEERFKEL-----LNENSI 845
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1958655286  558 QNVwdkvkaaQQLQEQLYsgkQEIEHLKEEMESLN 592
Cdd:COG4913    846 EFV-------ADLLSKLR---RAIREIKERIDPLN 870
PTZ00121 PTZ00121
MAEBL; Provisional
252-832 6.13e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.52  E-value: 6.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  252 SEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQlvaqdvTAKNAIQQIHKEMAQRMDQANKKCDEARQE 331
Cdd:PTZ00121  1075 SYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE------EAKKKAEDARKAEEARKAEDARKAEEARKA 1148
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  332 KEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRlqQLYESKEGETTRLARETEKLKEEmnS 411
Cdd:PTZ00121  1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR--KAEAARKAEEERKAEEARKAEDA--K 1224
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  412 HIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQncqdmiKTYQESEEIKSNELDAKLRVTKGELEKQM 491
Cdd:PTZ00121  1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ------AAIKAEEARKADELKKAEEKKKADEAKKA 1298
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  492 QE--KSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTkcledERLRTEDELSKYREiiNRQKAEIQNVWDKVKAAQQ 569
Cdd:PTZ00121  1299 EEkkKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA-----EEAKKAAEAAKAEA--EAAADEAEAAEEKAEAAEK 1371
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  570 LQEQlysGKQEIEHLKEEMESLNSlINDLQKDIEGSRKRESELllftekltSKNAQLQSEASSLQAQVDSLSCSEsQLQS 649
Cdd:PTZ00121  1372 KKEE---AKKKADAAKKKAEEKKK-ADEAKKKAEEDKKKADEL--------KKAAAAKKKADEAKKKAEEKKKAD-EAKK 1438
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  650 QCEHMKQtngdleSRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKL 729
Cdd:PTZ00121  1439 KAEEAKK------ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  730 DQTENGNYDKDVSSMGSRSSSSGSLNARSSAEDRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMEDH 809
Cdd:PTZ00121  1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
                          570       580
                   ....*....|....*....|...
gi 1958655286  810 IKQLVEEIRKKTKIIQSYVLREE 832
Cdd:PTZ00121  1593 RIEEVMKLYEEEKKMKAEEAKKA 1615
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
228-732 6.66e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.94  E-value: 6.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAI 307
Cdd:COG1196   320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 308 QQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQL 387
Cdd:COG1196   400 AQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 388 YESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQE 467
Cdd:COG1196   479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 468 SEEIKSNELDAKL-RVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKY 546
Cdd:COG1196   559 AAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 547 REIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLnslindLQKDIEGSRKRESELLLFTEKLTSKNAQL 626
Cdd:COG1196   639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE------LAERLAEEELELEEALLAEEEEERELAEA 712
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 627 QSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALST----------Q 696
Cdd:COG1196   713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnllaieeyeE 792
                         490       500       510
                  ....*....|....*....|....*....|....*....
gi 1958655286 697 VEELKDELVTQRrkhasnvKDLS---KQLQQARRKLDQT 732
Cdd:COG1196   793 LEERYDFLSEQR-------EDLEearETLEEAIEEIDRE 824
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
285-629 8.13e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 49.84  E-value: 8.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  285 LNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQrmdqANKKCDEARQEKEAMVMKY---------VRGEKEALDLRKEKET 355
Cdd:pfam12128  598 SEEELRERLDKAEEALQSAREKQAAAEEQLVQ----ANGELEKASREETFARTALknarldlrrLFDEKQSEKDKKNKAL 673
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  356 LERK------LRDASKELEKNTNKIKQLSQEKGR------------LQQLYESKEGETTRLARETEKLKEEMNSHIIKV- 416
Cdd:pfam12128  674 AERKdsanerLNSLEAQLKQLDKKHQAWLEEQKEqkreartekqayWQVVEGALDAQLALLKAAIAARRSGAKAELKALe 753
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  417 KWAQNKLKAeVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQeksd 496
Cdd:pfam12128  754 TWYKRDLAS-LGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQ---- 828
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  497 qlemhhakikeleDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIInRQKAEIQNVWDKVKAAQQLQEQLYS 576
Cdd:pfam12128  829 -------------QLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM-SKLATLKEDANSEQAQGSIGERLAQ 894
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1958655286  577 GKQEIEHLKEEMESLNSLINDLQKDIegSRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:pfam12128  895 LEDLKLKRDYLSESVKKYVEHFKNVI--ADHSGSGLAETWESLREEDHYQNDK 945
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
238-722 9.94e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 49.65  E-value: 9.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 238 KENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEElnkevkaskdqlvaqdvtaknaiqqiHKEMAQR 317
Cdd:PRK02224  199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEE--------------------------HEERREE 252
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 318 MDQANKKCDEARQEKEAMvmkyvrgekealdlRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRlqqlyESKEGETTR 397
Cdd:PRK02224  253 LETLEAEIEDLRETIAET--------------EREREELAEEVRDLRERLEELEEERDDLLAEAGL-----DDADAEAVE 313
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 398 LARET-EKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNEL 476
Cdd:PRK02224  314 ARREElEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 477 D------AKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLE-------DERLRTEDEL 543
Cdd:PRK02224  394 EelrerfGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEcgqpvegSPHVETIEED 473
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 544 SKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRkreselllftEKLTSKN 623
Cdd:PRK02224  474 RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR----------ERAEELR 543
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 624 AQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLEsrLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELkDE 703
Cdd:PRK02224  544 ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA--ELKERIESLERIRTLLAAIADAEDEIERLREKREAL-AE 620
                         490
                  ....*....|....*....
gi 1958655286 704 LVTQRRKHASNVKDLSKQL 722
Cdd:PRK02224  621 LNDERRERLAEKRERKREL 639
PRK01156 PRK01156
chromosome segregation protein; Provisional
253-607 1.17e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 49.13  E-value: 1.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 253 EKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQ----LVAQDVTAkNAIQQIHKEMAQRMDQANKKCDEA 328
Cdd:PRK01156  350 DLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFiseiLKIQEIDP-DAIKKELNEINVKLQDISSKVSSL 428
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 329 RQEKEAMVMKYVR---------------------GEKEALDLRK----EKETLERKLRDASKELEKNTNKIKQLSQEKGR 383
Cdd:PRK01156  429 NQRIRALRENLDElsrnmemlngqsvcpvcgttlGEEKSNHIINhyneKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 384 LqqlyeskEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEE----AEQIRQNCq 459
Cdd:PRK01156  509 L-------ESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTswlnALAVISLI- 580
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 460 DMIKTYQESEEIKS---------NELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRtfkegmdELRTLRTKTK 530
Cdd:PRK01156  581 DIETNRSRSNEIKKqlndlesrlQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKI-------LIEKLRGKID 653
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655286 531 CLEdERLRTEDELSKYREIINRQKAEIQNVWDKV-KAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:PRK01156  654 NYK-KQIAEIDSIIPDLKEITSRINDIEDNLKKSrKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
228-725 1.94e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 48.58  E-value: 1.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKkrtETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAI 307
Cdd:pfam15921  300 QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELR---EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLD 376
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  308 QQIHKEMAQrmdqANKKCDEARQEKEAMVMKYVRGEKEALDLrkekETLERKLRDASKELEKNTNKIKQLSQE-KGRLQQ 386
Cdd:pfam15921  377 DQLQKLLAD----LHKREKELSLEKEQNKRLWDRDTGNSITI----DHLRRELDDRNMEVQRLEALLKAMKSEcQGQMER 448
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  387 LYESKEGETTRLARETEklkeeMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQ 466
Cdd:pfam15921  449 QMAAIQGKNESLEKVSS-----LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR 523
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  467 ESEEIKSNELdaKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDEL-----RT---LRTKTKCLEDERLR 538
Cdd:pfam15921  524 SRVDLKLQEL--QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgqhgRTagaMQVEKAQLEKEIND 601
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  539 TEDELSKYREIINRQKAEIQNV--------WDKVKAAQQLQEQLYSG---KQEIEHLKEEMESLNSLINDLQKDIE---- 603
Cdd:pfam15921  602 RRLELQEFKILKDKKDAKIRELearvsdleLEKVKLVNAGSERLRAVkdiKQERDQLLNEVKTSRNELNSLSEDYEvlkr 681
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  604 GSRKRESELLLFTEKLTSKNAQLQSE---------------------ASSLQAQVDSLSCSESQLQSQCEHMKQ--TNGD 660
Cdd:pfam15921  682 NFRNKSEEMETTTNKLKMQLKSAQSEleqtrntlksmegsdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEamTNAN 761
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655286  661 LESRLLKEEElrkeevQSLQAELSAVQTEARALSTQVEELKdelvTQRRKHASNVKDLSKQLQQA 725
Cdd:pfam15921  762 KEKHFLKEEK------NKLSQELSTVATEKNKMAGELEVLR----SQERRLKEKVANMEVALDKA 816
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
255-454 2.29e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.53  E-value: 2.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  255 DNLREELKKRTETEKLHMNT-IKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQrMDQANKKCDEARQEKE 333
Cdd:TIGR02169  275 EELNKKIKDLGEEEQLRVKEkIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE-IEELEREIEEERKRRD 353
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  334 AMVMKYVRGEKEALDLRKEKETLE-------RKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:TIGR02169  354 KLTEEYAELKEELEDLRAELEEVDkefaetrDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1958655286  407 EEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQI 454
Cdd:TIGR02169  434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
219-656 2.60e-05

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 48.12  E-value: 2.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  219 EKCVHSRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRteteklhMNTIKQLELRIEELNKEVKASKdqlva 298
Cdd:TIGR00606  208 ELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR-------LKEIEHNLSKIMKLDNEIKALK----- 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  299 qdvTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRG-EKEALDLRKEKETLERKLRDASKELEKNTNKIKQL 377
Cdd:TIGR00606  276 ---SRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREkERELVDCQRELEKLNKERRLLNQEKTELLVEQGRL 352
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  378 SQEKGRLQQLYESKEGETTRLARETE--KLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIR 455
Cdd:TIGR00606  353 QLQADRHQEHIRARDSLIQSLATRLEldGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIR 432
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  456 QNCQDMIKTYQESEEIKSNELDaKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDElrTLRTKTKCLEDE 535
Cdd:TIGR00606  433 DEKKGLGRTIELKKEILEKKQE-ELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE--TLKKEVKSLQNE 509
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  536 RL---RTEDELSKYREIINRQKAEIQNVW----DKVKAAQQLQEQLYSGKQEIEHLKEEM---ESLNSLINDLQKDIEGS 605
Cdd:TIGR00606  510 KAdldRKLRKLDQEMEQLNHHTTTRTQMEmltkDKMDKDEQIRKIKSRHSDELTSLLGYFpnkKQLEDWLHSKSKEINQT 589
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958655286  606 RKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLS------CSESQLQSQCEHMKQ 656
Cdd:TIGR00606  590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvCGSQDEESDLERLKE 646
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
532-734 4.44e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.68  E-value: 4.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 532 LEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQ----LQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:COG4942    25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaaLARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 608 RESELLlftekltsKNAQLQSEASSLQAQVDSlsCSESQLQSQCEHMKQTNGDLEsrllkeeeLRKEEVQSLQAELSAVQ 687
Cdd:COG4942   105 ELAELL--------RALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARR--------EQAEELRADLAELAALR 166
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1958655286 688 TEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:COG4942   167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA 213
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
363-523 4.82e-05

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 47.13  E-value: 4.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 363 ASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEvdSHKETKDKLKEttt 442
Cdd:PRK00409  507 AKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE--AEKEAQQAIKE--- 581
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 443 kltqAKEEAEQIRQNCQDMIKtyQESEEIKSNELDAKLRvtkgELEKQMQEKSdqlemhhAKIKELEDLKRTFKEGmDEL 522
Cdd:PRK00409  582 ----AKKEADEIIKELRQLQK--GGYASVKAHELIEARK----RLNKANEKKE-------KKKKKQKEKQEELKVG-DEV 643

                  .
gi 1958655286 523 R 523
Cdd:PRK00409  644 K 644
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
162-732 5.53e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 47.14  E-value: 5.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  162 SLYDTDCTRKLISKIKTVSASDDLLGEIESELLSAELAEEHQVPNG--VNKGEHALALFEKCVHSRYLQQELTIQQLIKE 239
Cdd:pfam12128  170 ALCDSESPLRHIDKIAKAMHSKEGKFRDVKSMIVAILEDDGVVPPKsrLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQE 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  240 NKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMaQRMD 319
Cdd:pfam12128  250 FNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSEL-EALE 328
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  320 QANKKCDEARQEKEAmvmkyvrGEKEALDLrkeketLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESkegettRLA 399
Cdd:pfam12128  329 DQHGAFLDADIETAA-------ADQEQLPS------WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKE------QNN 389
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  400 RETEKLKEEMnshiikvkwaqnklkaevDSHKETKDKLKETTTKLTQAkEEAEQIRQNCQDMIKTYQESEEIKSNELDAK 479
Cdd:pfam12128  390 RDIAGIKDKL------------------AKIREARDRQLAVAEDDLQA-LESELREQLEAGKLEFNEEEYRLKSRLGELK 450
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  480 LRVTKG--ELEKQMQEKSDQLEMHHAKiKELEDLKRTFKEGMDELRTLRTKTkclederlrteDELSKYREIINRQKAEI 557
Cdd:pfam12128  451 LRLNQAtaTPELLLQLENFDERIERAR-EEQEAANAEVERLQSELRQARKRR-----------DQASEALRQASRRLEER 518
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  558 QNvwdkvkAAQQLQEQLYSGKQE-IEHLKEEM----ESLNSLIN-------DLQKDIEGSRKREsELLLFTEKLTSKNAQ 625
Cdd:pfam12128  519 QS------ALDELELQLFPQAGTlLHFLRKEApdweQSIGKVISpellhrtDLDPEVWDGSVGG-ELNLYGVKLDLKRID 591
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  626 LQSEASSLQAQVDSLSCSESQLQSQC-------EHMKQTNGDLESRLLKEEELRKEEVQS---LQAELSAVQTEARALST 695
Cdd:pfam12128  592 VPEWAASEEELRERLDKAEEALQSARekqaaaeEQLVQANGELEKASREETFARTALKNArldLRRLFDEKQSEKDKKNK 671
                          570       580       590
                   ....*....|....*....|....*....|....*..
gi 1958655286  696 QVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQT 732
Cdd:pfam12128  672 ALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQ 708
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
282-557 6.28e-05

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 46.84  E-value: 6.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 282 IEELNKEVKASKDQLVAQDVT-AKNAIQQIHKEMaqrmdQANKKCDEARQEkeamvMKYVRGEKEALDLRKEKETLERKL 360
Cdd:PRK05771   33 IEDLKEELSNERLRKLRSLLTkLSEALDKLRSYL-----PKLNPLREEKKK-----VSVKSLEELIKDVEEELEKIEKEI 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 361 RDASKELEKNTNKIKQLSQEKGRLQQLY-----ESKEGETTRLARETEKLKEEmnshiikvKWAQNKLKAEVDSHKETKD 435
Cdd:PRK05771  103 KELEEEISELENEIKELEQEIERLEPWGnfdldLSLLLGFKYVSVFVGTVPED--------KLEELKLESDVENVEYIST 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 436 KLKETTTKLTQAKEEAEQIrqncqdmiktyqeSEEIKSNELDAKLRVTKGELEKQMQEKSDQLEmhhAKIKELEDLKrtf 515
Cdd:PRK05771  175 DKGYVYVVVVVLKELSDEV-------------EEELKKLGFERLELEEEGTPSELIREIKEELE---EIEKERESLL--- 235
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1958655286 516 kegmDELRTLRTKtkcLEDERLRTEDELSkyreiINRQKAEI 557
Cdd:PRK05771  236 ----EELKELAKK---YLEELLALYEYLE-----IELERAEA 265
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
343-587 7.15e-05

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 464932 [Multi-domain]  Cd Length: 329  Bit Score: 45.96  E-value: 7.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 343 EKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK---------EEMNSHI 413
Cdd:pfam15905  79 EKEIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVNELLKakfsedgtqKKMSSLS 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 414 IKVKWAQNKL----KAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQE--SEEIKSNELDAKLRVTKGEL 487
Cdd:pfam15905 159 MELMKLRNKLeakmKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEekSETEKLLEYITELSCVSEQV 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 488 EKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRT----LRTKTKCLEDErlrTEDELSKYREIINRQKAEIQNvwdk 563
Cdd:pfam15905 239 EKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKqikdLNEKCKLLESE---KEELLREYEEKEQTLNAELEE---- 311
                         250       260
                  ....*....|....*....|....
gi 1958655286 564 vkaaqqLQEQLYSGKQEIEHLKEE 587
Cdd:pfam15905 312 ------LKEKLTLEEQEHQKLQQK 329
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
255-613 7.98e-05

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 46.39  E-value: 7.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 255 DNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLvaqdvtaKNAIQQIHKemaqRMDQANKKCDEARQEKEA 334
Cdd:pfam06160 103 KQILEELDELLESEEKNREEVEELKDKYRELRKTLLANRFSY-------GPAIDELEK----QLAEIEEEFSQFEELTES 171
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 335 MvmKYVRGEKEALDLRKEKETLERK-------LRDASKELEKNTNKIKQLSQE-------------KGRLQQLYESKEGE 394
Cdd:pfam06160 172 G--DYLEAREVLEKLEEETDALEELmedipplYEELKTELPDQLEELKEGYREmeeegyalehlnvDKEIQQLEEQLEEN 249
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 395 TTRLAR----ETEKLKEEMNSHIIKVkwaQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTY--QES 468
Cdd:pfam06160 250 LALLENleldEAEEALEEIEERIDQL---YDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYtlNEN 326
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 469 EEIKSNELDAKLRvtkgELEKQMQEKSDQLEMHHAK----IKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELS 544
Cdd:pfam06160 327 ELERVRGLEKQLE----ELEKRYDEIVERLEEKEVAyselQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLD 402
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655286 545 KYREIINRQKAEIQNVwDKVKAAQQLQEQLYSGKQEIEHLKEE-------MESLNSLINDLQKDIEGSRKRESELL 613
Cdd:pfam06160 403 EFKLELREIKRLVEKS-NLPGLPESYLDYFFDVSDEIEDLADElnevplnMDEVNRLLDEAQDDVDTLYEKTEELI 477
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
224-704 8.41e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.57  E-value: 8.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 224 SRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTET--EKLHMNTIKQLELRIEELNKE-VKASKDQLVAQD 300
Cdd:PRK02224  244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERleELEEERDDLLAEAGLDDADAEaVEARREELEDRD 323
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 301 VTAKNAIQqihkEMAQRMDQANKKCDEARQEKEAMvmkyvrgEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQE 380
Cdd:PRK02224  324 EELRDRLE----ECRVAAQAHNEEAESLREDADDL-------EERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 381 KGRLQQLYESKEGETTRLARETEKLKEEMNshiikvkwaqnklkaevdshkETKDKLKETTTKLTQAK---EEAEQIRQ- 456
Cdd:PRK02224  393 IEELRERFGDAPVDLGNAEDFLEELREERD---------------------ELREREAELEATLRTARervEEAEALLEa 451
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 457 -NCQDMIKTYQESEEIKSNELDaklRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEgMDELRTLRTKTKCLEDE 535
Cdd:PRK02224  452 gKCPECGQPVEGSPHVETIEED---RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR-IERLEERREDLEELIAE 527
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 536 RLRTEDELSKYREIINRQKAEIQ-NVWDKVKAAQQLQEQLYSGKQEI-------EHLKEEMESLN------SLINDLQKD 601
Cdd:PRK02224  528 RRETIEEKRERAEELRERAAELEaEAEEKREAAAEAEEEAEEAREEVaelnsklAELKERIESLErirtllAAIADAEDE 607
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 602 IEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQ--CEHMKQTNGDLESRLLKEEelrkeevqSL 679
Cdd:PRK02224  608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraEEYLEQVEEKLDELREERD--------DL 679
                         490       500
                  ....*....|....*....|....*
gi 1958655286 680 QAELSAVQTEARALstqvEELKDEL 704
Cdd:PRK02224  680 QAEIGAVENELEEL----EELRERR 700
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
466-713 1.18e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 466 QESEEIKSNELDAKLRVTKGELEKQMQEKSDQLemhhakiKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSK 545
Cdd:COG4942    22 AAEAEAELEQLQQEIAELEKELAALKKEEKALL-------KQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 546 YREIINRQKAEIQNVwdkVKAAQQLQEQ----LYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKReselllfTEKLTS 621
Cdd:COG4942    95 LRAELEAQKEELAEL---LRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAD-------LAELAA 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 622 KNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLlkeeelrkeevQSLQAELSAVQTEARALSTQVEELK 701
Cdd:COG4942   165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL-----------AELAAELAELQQEAEELEALIARLE 233
                         250
                  ....*....|..
gi 1958655286 702 DELVTQRRKHAS 713
Cdd:COG4942   234 AEAAAAAERTPA 245
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
349-536 1.32e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.53  E-value: 1.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 349 LRKEKETLE----RKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLArETEKLKEEMNSHIIKVKWAQNKLK 424
Cdd:COG4717    51 LEKEADELFkpqgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLP 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 425 AEVDShKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKsNELDAKLRVTKGELEKQMQEKSDQLEMHHAK 504
Cdd:COG4717   130 LYQEL-EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQ-EELEELLEQLSLATEEELQDLAEELEELQQR 207
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1958655286 505 IK----ELEDLKRTFKEGMDELRTLRTKTKCLEDER 536
Cdd:COG4717   208 LAeleeELEEAQEELEELEEELEQLENELEAAALEE 243
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
227-738 1.84e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 45.34  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  227 LQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVT---- 302
Cdd:TIGR00618  228 LKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTqieq 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  303 -AKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKN-TNKIKQLSQE 380
Cdd:TIGR00618  308 qAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTlTQHIHTLQQQ 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  381 KGRLQQLYESKEGETTRLARETEK---LKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQN 457
Cdd:TIGR00618  388 KTTLTQKLQSLCKELDILQREQATidtRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  458 CQDMIKTYQESEEIKSNE-----LDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKcl 532
Cdd:TIGR00618  468 LKEREQQLQTKEQIHLQEtrkkaVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE-- 545
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  533 ederlRTEDELSKYREIINRQKAEIqnvwdkvkaaQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEG-SRKRESE 611
Cdd:TIGR00618  546 -----DVYHQLTSERKQRASLKEQM----------QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKlSEAEDML 610
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  612 LLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEAR 691
Cdd:TIGR00618  611 ACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKE 690
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*....
gi 1958655286  692 ALSTQVEEL--KDELVTQRRKHASNVKDLSKQLQQARRKLDQTENGNYD 738
Cdd:TIGR00618  691 QLTYWKEMLaqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARED 739
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
256-611 1.98e-04

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 45.35  E-value: 1.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  256 NLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQlvAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAM 335
Cdd:pfam02463  166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ--AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  336 VMKYVRGEKEALDLRKEKETlERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIK 415
Cdd:pfam02463  244 ELLRDEQEEIESSKQEIEKE-EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  416 VKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcqdmiktyQESEEIKSNELDAKLRVTKGELEKQMQEKS 495
Cdd:pfam02463  323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL--------QEKLEQLEEELLAKKKLESERLSSAAKLKE 394
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  496 DQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKtkclEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLY 575
Cdd:pfam02463  395 EELELKSEEEKEAQLLLELARQLEDLLKEEKKE----ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
                          330       340       350
                   ....*....|....*....|....*....|....*.
gi 1958655286  576 SGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESE 611
Cdd:pfam02463  471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
545-734 2.11e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 45.31  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 545 KYREIinRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNA 624
Cdd:COG1196   214 RYREL--KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 625 QLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRkeevQSLQAELSAVQTEARALSTQVEELKDEL 704
Cdd:COG1196   292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEAL 367
                         170       180       190
                  ....*....|....*....|....*....|
gi 1958655286 705 VTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:COG1196   368 LEAEAELAEAEEELEELAEELLEALRAAAE 397
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
275-508 2.17e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.29  E-value: 2.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  275 IKQLELRIEELNKEVKASKDQLvAQDVTAKNAIQQI--HKEMAQRMDQANKKCDEARQEKEAMV--MKYVRGEKEALD-L 349
Cdd:COG4913    619 LAELEEELAEAEERLEALEAEL-DALQERREALQRLaeYSWDEIDVASAEREIAELEAELERLDasSDDLAALEEQLEeL 697
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  350 RKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETeklkeemnshiikvkwAQNKLKAEVDS 429
Cdd:COG4913    698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL----------------LEERFAAALGD 761
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  430 HKEtKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRvTKGELEKQMQE-KSDQLEMHHAKIKEL 508
Cdd:COG4913    762 AVE-RELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLE-SLPEYLALLDRlEEDGLPEYEERFKEL 839
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
339-543 2.55e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.91  E-value: 2.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  339 YVRGEKEALDLRKEKETLERkLRDASKELEKNTNKIKQLSQEKGRL-----QQLYESKEGETTRLARETEKLKEEMNSHI 413
Cdd:COG4913    237 LERAHEALEDAREQIELLEP-IRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLE 315
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  414 IKVKWAQNK---LKAEVDSHK-ETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEK 489
Cdd:COG4913    316 ARLDALREEldeLEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1958655286  490 QMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDEL 543
Cdd:COG4913    396 LEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
PRK12704 PRK12704
phosphodiesterase; Provisional
256-408 2.67e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.77  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 256 NLREELKKRTETEKLHMNTIKQLELRieELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAM 335
Cdd:PRK12704   35 EAEEEAKRILEEAKKEAEAIKKEALL--EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655286 336 VMKYVRGEKEALDLRKEKETLERKLRDASKELEkntnKIKQLSQEKGR---LQQLYESKEGETTRLARETEKLKEE 408
Cdd:PRK12704  113 EKKEKELEQKQQELEKKEEELEELIEEQLQELE----RISGLTAEEAKeilLEKVEEEARHEAAVLIKEIEEEAKE 184
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
435-610 2.69e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.76  E-value: 2.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 435 DKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRT 514
Cdd:COG4717    71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 515 FKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAeiQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSL 594
Cdd:COG4717   151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE--EELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
                         170
                  ....*....|....*.
gi 1958655286 595 INDLQKDIEGSRKRES 610
Cdd:COG4717   229 LEQLENELEAAALEER 244
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
504-729 2.78e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 2.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  504 KIKELEDLKRTfKEGMDELRT----LRTKTKCLEDERLRTEdelsKYREIinRQKAEIQNVWDKVKAAQQLQEQLYSGKQ 579
Cdd:TIGR02169  172 KEKALEELEEV-EENIERLDLiideKRQQLERLRREREKAE----RYQAL--LKEKREYEGYELLKEKEALERQKEAIER 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  580 EIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTS-KNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTN 658
Cdd:TIGR02169  245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  659 GDLESRLLKEEELR-----------------KEEVQSLQAELSAVQTEARALSTQVEELKDELVtQRRKHASNVKDLSKQ 721
Cdd:TIGR02169  325 AKLEAEIDKLLAEIeelereieeerkrrdklTEEYAELKEELEDLRAELEEVDKEFAETRDELK-DYREKLEKLKREINE 403

                   ....*...
gi 1958655286  722 LQQARRKL 729
Cdd:TIGR02169  404 LKRELDRL 411
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
312-830 2.83e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 44.71  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 312 KEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESK 391
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDL 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 392 EGETTRLARETEKLKEEMNSHII----KVKWAQNKLK-AEVDSHKETKDKLKETTTKLTQAKEEAEQIRqncqDMIKTYQ 466
Cdd:pfam05483 189 NNNIEKMILAFEELRVQAENARLemhfKLKEDHEKIQhLEEEYKKEINDKEKQVSLLLIQITEKENKMK----DLTFLLE 264
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 467 ESEEiKSNELDAKLRVTKGELeKQMQEKSDQLemhhakIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKY 546
Cdd:pfam05483 265 ESRD-KANQLEEKTKLQDENL-KELIEKKDHL------TKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQ 336
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 547 REIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEieHLKEEMESLNSLINDLQKdiegsrkRESELLLFTEKLTSKNAQL 626
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQ--RLEKNEDQLKIITMELQK-------KSSELEEMTKFKNNKEVEL 407
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 627 QsEASSLQAQVDSLSCSESQLQSQCEHMKQTngdlESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVT 706
Cdd:pfam05483 408 E-ELKKILAEDEKLLDEKKQFEKIAEELKGK----EQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEK 482
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 707 QRRKHA----------------------------SNVKDLSKQLQQARRKLDQTENGNYDKDVSSMGSRSSSSGSLNARS 758
Cdd:pfam05483 483 EKLKNIeltahcdklllenkeltqeasdmtlelkKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGD 562
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655286 759 SAE---DRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMEDHIKQLVEEIRKKTKIIQSYVLR 830
Cdd:pfam05483 563 EVKcklDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIK 637
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
228-733 2.93e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.96  E-value: 2.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQdvtaknAI 307
Cdd:TIGR00618  337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE------QA 410
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  308 QQIHKEMAQRMDQANKKCDEARQ--EKEAMVMKYVRGEKEALDLrKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQ 385
Cdd:TIGR00618  411 TIDTRTSAFRDLQGQLAHAKKQQelQQRYAELCAAAITCTAQCE-KLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKK 489
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  386 QLYESKEGETTRLARETEKLKEEMNSHII----------KVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIR 455
Cdd:TIGR00618  490 AVVLARLLELQEEPCPLCGSCIHPNPARQdidnpgpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  456 QNCQDMIKTYQESEEIKSNELDAKLRVTKgELEKQMQEKSDQLEMHHAKIKELE------DLKRTFKEGMDELRTLRTkT 529
Cdd:TIGR00618  570 QSFSILTQCDNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALLRKLQpeqdlqDVRLHLQQCSQELALKLT-A 647
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  530 KCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLnslindLQKDIEGSRKRE 609
Cdd:TIGR00618  648 LHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL------ETHIEEYDREFN 721
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  610 selllftekltsknaQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTngdlesrllKEEELRKEEVQSLQAELSAVQTe 689
Cdd:TIGR00618  722 ---------------EIENASSSLGSDLAAREDALNQSLKELMHQART---------VLKARTEAHFNNNEEVTAALQT- 776
                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....
gi 1958655286  690 aralSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:TIGR00618  777 ----GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDE 816
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
403-731 3.95e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 44.34  E-value: 3.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  403 EKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEiksnELDAKLRV 482
Cdd:pfam15921   74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQE----DLRNQLQN 149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  483 TKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSK--YREIINRQKAEIQNV 560
Cdd:pfam15921  150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmhFRSLGSAISKILREL 229
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  561 WDKVkaaQQLQEQLYSGKQEIEHLKEEMES-LNSLINDLQKDIEG-SRKRESELLLFTEKLTSKNAQLQSEASSLQAQVD 638
Cdd:pfam15921  230 DTEI---SYLKGRIFPVEDQLEALKSESQNkIELLLQQHQDRIEQlISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  639 SLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQ-------AELSAVQTEARALSTQVEELKDELVTQRRKH 711
Cdd:pfam15921  307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanSELTEARTERDQFSQESGNLDDQLQKLLADL 386
                          330       340
                   ....*....|....*....|
gi 1958655286  712 ASNVKDLSKQLQQARRKLDQ 731
Cdd:pfam15921  387 HKREKELSLEKEQNKRLWDR 406
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
506-657 4.64e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.60  E-value: 4.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 506 KELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQ------ 579
Cdd:COG1579    17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealqk 96
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655286 580 EIEHLKEEMESLNSLINDLQKDIEGSRKRESELllfTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQT 657
Cdd:COG1579    97 EIESLKRRISDLEDEILELMERIEELEEELAEL---EAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
261-734 4.65e-04

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 44.27  E-value: 4.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  261 LKKRTETEKLHMNTIKQLELRIEELNKEVKASK----DQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMV 336
Cdd:TIGR01612 1228 LEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPeienEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKS 1307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  337 MKYVRGEKEALDLRKEKETLERKLRDASK---ELEKNTNKIKQLSQekgrLQQLYESKE--GETTRLARETEKLKEEMNS 411
Cdd:TIGR01612 1308 LKIIEDFSEESDINDIKKELQKNLLDAQKhnsDINLYLNEIANIYN----ILKLNKIKKiiDEVKEYTKEIEENNKNIKD 1383
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  412 HIIKVKWAQNKLKAEVdSHKETKDKLkETTTKLTQAKEEAEQIRQncqdmIKTYQESEEIKSNEL--DAKLRVTKGELEK 489
Cdd:TIGR01612 1384 ELDKSEKLIKKIKDDI-NLEECKSKI-ESTLDDKDIDECIKKIKE-----LKNHILSEESNIDTYfkNADENNENVLLLF 1456
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  490 QMQEKSDQLEMHHAKIKElEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAqQ 569
Cdd:TIGR01612 1457 KNIEMADNKSQHILKIKK-DNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSAL-A 1534
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  570 LQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLscsESQLQS 649
Cdd:TIGR01612 1535 IKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENF---ENKFLK 1611
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  650 QCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDElvtqrrkhASNVKDLSKQLQQARRKL 729
Cdd:TIGR01612 1612 ISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQ--------KKNIEDKKKELDELDSEI 1683

                   ....*
gi 1958655286  730 DQTEN 734
Cdd:TIGR01612 1684 EKIEI 1688
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
327-634 5.08e-04

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 44.19  E-value: 5.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:pfam02463  202 LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK 281
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  407 EEMNSHiikvkwaQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRvTKGE 486
Cdd:pfam02463  282 KLQEEE-------LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEI-KREA 353
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  487 LEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKA 566
Cdd:pfam02463  354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655286  567 AQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQ-KDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQ 634
Cdd:pfam02463  434 EEEESIELKQGKLTEEKEELEKQELKLLKDELElKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKE 502
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
188-437 5.16e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.89  E-value: 5.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  188 EIESELLSAELAEEHQVPNGVNKGEHALALFEKCVHSRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTET 267
Cdd:TIGR02168  746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  268 EKLHMNTIKQLELRIEELNKEVKASKDQLVaqdvtaknAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEAL 347
Cdd:TIGR02168  826 LESLERRIAATERRLEDLEEQIEELSEDIE--------SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  348 DLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGettRLARETEKLKEEMNSHIIKVKWAQNKLKAEV 427
Cdd:TIGR02168  898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRL 974
                          250
                   ....*....|
gi 1958655286  428 DSHKETKDKL 437
Cdd:TIGR02168  975 KRLENKIKEL 984
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
263-469 5.40e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.85  E-value: 5.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 263 KRTETEKlhmnTIKQLELRIEELNKEVKASKDQL---------VAQDVTAKNAIQQIhKEMAQRMDQANKKCDEARQEKE 333
Cdd:COG3206   169 RREEARK----ALEFLEEQLPELRKELEEAEAALeefrqknglVDLSEEAKLLLQQL-SELESQLAEARAELAEAEARLA 243
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 334 AM---------VMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQlyeskegettRLARETEK 404
Cdd:COG3206   244 ALraqlgsgpdALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA----------QLQQEAQR 313
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655286 405 LKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESE 469
Cdd:COG3206   314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
PTZ00121 PTZ00121
MAEBL; Provisional
239-611 5.65e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 5.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  239 ENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHK-EMAQR 317
Cdd:PTZ00121  1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaEEAKK 1669
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  318 MDQANKKCDEARQE------KEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEkgrlqqlyesk 391
Cdd:PTZ00121  1670 AEEDKKKAEEAKKAeedekkAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE----------- 1738
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  392 EGETTRLARETEKLKEEMNshiikvKWAQnkLKAEVDSHKETKDKLKETTTKlTQAKEEAEQIRQNCQDMIK-TYQESEE 470
Cdd:PTZ00121  1739 AEEDKKKAEEAKKDEEEKK------KIAH--LKKEEEKKAEEIRKEKEAVIE-EELDEEDEKRRMEVDKKIKdIFDNFAN 1809
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  471 IKSNELDAKLRVtkgelekqmqekSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREII 550
Cdd:PTZ00121  1810 IIEGGKEGNLVI------------NDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLK 1877
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958655286  551 NRQKAEIQNVwdkvkaaqQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESE 611
Cdd:PTZ00121  1878 EDDEEEIEEA--------DEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAE 1930
PRK01156 PRK01156
chromosome segregation protein; Provisional
349-733 5.96e-04

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 43.74  E-value: 5.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 349 LRKEKETLERKLRDASKELEKNTnkikqLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVkwaqNKLKAEVD 428
Cdd:PRK01156   99 IKKDGSIIAEGFDDTTKYIEKNI-----LGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEI----NSLERNYD 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 429 SHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKlrvtkGELEKQMQEKSDQLEMHHAKIKEL 508
Cdd:PRK01156  170 KLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEI-----ERLSIEYNNAMDDYNNLKSALNEL 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 509 EDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINrqkaeiqnvwDKVKAAQQLQEQLYSGKQEIEHLKEEM 588
Cdd:PRK01156  245 SSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIN----------DPVYKNRNYINDYFKYKNDIENKKQIL 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 589 ESLNSLINDLQKDIegsrKRESELllftEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLEsrllke 668
Cdd:PRK01156  315 SNIDAEINKYHAII----KKLSVL----QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE------ 380
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655286 669 eeLRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:PRK01156  381 --EYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELS 443
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
374-619 6.43e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 42.98  E-value: 6.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 374 IKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKwaqnKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQ 453
Cdd:COG1340    10 LEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVK----ELREEAQELREKRDELNEKVKELKEERDELNE 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 454 IRQNCQDMIKTYQES--EEIKSNELDAKLRVTKGELEKQMQ------EKSDQLEMHHAKIKELEDLKRTFKEGMDELRTL 525
Cdd:COG1340    86 KLNELREELDELRKElaELNKAGGSIDKLRKEIERLEWRQQtevlspEEEKELVEKIKELEKELEKAKKALEKNEKLKEL 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 526 RTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVwdkVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGS 605
Cdd:COG1340   166 RAELKELRKEAEEIHKKIKELAEEAQELHEEMIEL---YKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELREL 242
                         250
                  ....*....|....
gi 1958655286 606 RKRESELLLFTEKL 619
Cdd:COG1340   243 RKELKKLRKKQRAL 256
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
381-734 9.02e-04

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 43.02  E-value: 9.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 381 KGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQD 460
Cdd:COG5185   165 FGKLTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESE 244
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 461 MIKTYQESEEIKSN-ELDAKLRVTK----GELEKQMQEKS----DQLEMHHAKIKELE---DLKRTFKEGMDELRTLRTK 528
Cdd:COG5185   245 LEDLAQTSDKLEKLvEQNTDLRLEKlgenAESSKRLNENAnnliKQFENTKEKIAEYTksiDIKKATESLEEQLAAAEAE 324
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 529 TKcLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAA----------QQLQEQLYSGKQEIEHLKEEMEslNSLINDL 598
Cdd:COG5185   325 QE-LEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEienivgevelSKSSEELDSFKDTIESTKESLD--EIPQNQR 401
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 599 QKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQsqcehmkqtngdlESRLLKEEELRKEEVQS 678
Cdd:COG5185   402 GYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELN-------------KVMREADEESQSRLEEA 468
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655286 679 LQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:COG5185   469 YDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAE 524
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
275-428 9.93e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.83  E-value: 9.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 275 IKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQI-HKEMAQRMDQANKKCDEARQEKeamvmkyVRGEKEALDLRKEK 353
Cdd:COG1579    26 LKELPAELAELEDELAALEARLEAAKTELEDLEKEIkRLELEIEEVEARIKKYEEQLGN-------VRNNKEYEALQKEI 98
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655286 354 ETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVD 428
Cdd:COG1579    99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
46 PHA02562
endonuclease subunit; Provisional
408-602 1.05e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 42.69  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 408 EMNSHIIKVKWAQNKLKAEVDSHKE--------TKDKLKETTTKLTQAKEEAEQIRQ---NCQDMIKTYQESEEIKSNEL 476
Cdd:PHA02562  178 ELNQQIQTLDMKIDHIQQQIKTYNKnieeqrkkNGENIARKQNKYDELVEEAKTIKAeieELTDELLNLVMDIEDPSAAL 257
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 477 dAKLRVTKGELEKQMQEKSDQLEMHH----------------AKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTE 540
Cdd:PHA02562  258 -NKLNTAAAKIKSKIEQFQKVIKMYEkggvcptctqqisegpDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQS 336
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655286 541 DELSKYREIINRQKAEIQNVWDKVKAAQ----QLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDI 602
Cdd:PHA02562  337 KKLLELKNKISTNKQSLITLVDKAKKVKaaieELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
PRK12704 PRK12704
phosphodiesterase; Provisional
303-484 1.23e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.46  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 303 AKNAIQQIHKEMAQRMDQANKKCDEARQEKEamvmkyVRGEKEALDLRKEketLERKLRDASKELEKNTNKIKQLSQEKG 382
Cdd:PRK12704   29 AEAKIKEAEEEAKRILEEAKKEAEAIKKEAL------LEAKEEIHKLRNE---FEKELRERRNELQKLEKRLLQKEENLD 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 383 RLQQLYESKEGETTRLARETEKLKEEMnshiikvkwaqNKLKAEVDS-HKETKDKLkETTTKLTQakEEA-EQIRQNCQD 460
Cdd:PRK12704  100 RKLELLEKREEELEKKEKELEQKQQEL-----------EKKEEELEElIEEQLQEL-ERISGLTA--EEAkEILLEKVEE 165
                         170       180
                  ....*....|....*....|....
gi 1958655286 461 MIKtYQESEEIKSNELDAKLRVTK 484
Cdd:PRK12704  166 EAR-HEAAVLIKEIEEEAKEEADK 188
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
218-634 1.24e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 42.73  E-value: 1.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  218 FEKCVHSRYLQQELTIQQLIKENKNHQELILNicseKDNLREELKKRTETEKLHMNTI------KQLELRIEELNKEVKA 291
Cdd:TIGR00606  575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQN----KNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEK 650
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  292 SKDQLvAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEamvmkyvrgekealDLRKEKETLERKLRDASKELEKNT 371
Cdd:TIGR00606  651 SSKQR-AMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEA--------------ELQEFISDLQSKLRLAPDKLKSTE 715
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  372 NKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNShiikvkwaQNKLKAEVDSHKETKDKLKETttkLTQAKEEA 451
Cdd:TIGR00606  716 SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQK--------VNRDIQRLKNDIEEQETLLGT---IMPEEESA 784
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  452 EQIRQNCQDMIKTYQESEEI--KSNELDAKLRVTKGELEKQM--QEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRT 527
Cdd:TIGR00606  785 KVCLTDVTIMERFQMELKDVerKIAQQAAKLQGSDLDRTVQQvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  528 KTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLnslindLQKDIEGSRK 607
Cdd:TIGR00606  865 KTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL------ISSKETSNKK 938
                          410       420
                   ....*....|....*....|....*..
gi 1958655286  608 RESELLLFTEKLTSKNAQLQSEASSLQ 634
Cdd:TIGR00606  939 AQDKVNDIKEKVKNIHGYMKDIENKIQ 965
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
259-380 1.32e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 42.51  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 259 EELKKRTETEKLHmntIKQLELRIEELNKEVKASKDQLvaqdvtaknaiQQIHKEMAQRMDQ-ANKKCDEARQEKEAMVM 337
Cdd:PRK00409  526 EELERELEQKAEE---AEALLKEAEKLKEELEEKKEKL-----------QEEEDKLLEEAEKeAQQAIKEAKKEADEIIK 591
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1958655286 338 KYVRGEKEALDLRKEKETLE--RKLRDASKELEKNTNKIKQLSQE 380
Cdd:PRK00409  592 ELRQLQKGGYASVKAHELIEarKRLNKANEKKEKKKKKQKEKQEE 636
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
433-635 1.83e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 41.84  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 433 TKDKLKETTTKL----------TQAKEEAEQIR---------QNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQE 493
Cdd:PRK05771   14 LKSYKDEVLEALhelgvvhiedLKEELSNERLRklrslltklSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEE 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 494 KSDQLE-----MHHaKIKELEDLKRTFKEGMDELRTLRTKTkcLEDERLRT------------EDELSKYREIINRQKAE 556
Cdd:PRK05771   94 ELEKIEkeikeLEE-EISELENEIKELEQEIERLEPWGNFD--LDLSLLLGfkyvsvfvgtvpEDKLEELKLESDVENVE 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 557 IQN---------VWDKVKAAQQLQEQL-----------YSG--KQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLL 614
Cdd:PRK05771  171 YIStdkgyvyvvVVVLKELSDEVEEELkklgferleleEEGtpSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250
                         250       260
                  ....*....|....*....|.
gi 1958655286 615 FTEKLTSkNAQLQSEASSLQA 635
Cdd:PRK05771  251 ALYEYLE-IELERAEALSKFL 270
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
343-494 1.85e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.06  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 343 EKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNShIIKVKWAQNk 422
Cdd:COG1579    16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGN-VRNNKEYEA- 93
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958655286 423 LKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEK 494
Cdd:COG1579    94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER 165
Filament pfam00038
Intermediate filament protein;
531-726 1.91e-03

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 41.44  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 531 CLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLK----EEMESLNSLINDLQKDIEGSR 606
Cdd:pfam00038  83 AAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKknheEEVRELQAQVSDTQVNVEMDA 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 607 KRESELllfTEKLTSKNAQLQSEASSLQAQvdslscSESQLQSQCEHMKQ---TNGDLESRLLKEEELRKEEVQSLQAEL 683
Cdd:pfam00038 163 ARKLDL---TSALAEIRAQYEEIAAKNREE------AEEWYQSKLEELQQaaaRNGDALRSAKEEITELRRTIQSLEIEL 233
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1958655286 684 SAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQAR 726
Cdd:pfam00038 234 QSLKKQKASLERQLAETEERYELQLADYQELISELEAELQETR 276
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
255-922 2.45e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.98  E-value: 2.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  255 DNLREELKkRTETEKLHMNTIKQLELRIEELN-KEVKASKDQLVAQDVTAKNAIQQIHKEMAQ---RMDQANKKCDEARQ 330
Cdd:TIGR02169  194 DEKRQQLE-RLRREREKAERYQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEELEKlteEISELEKRLEEIEQ 272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  331 EKEAMVMK--------YVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARET 402
Cdd:TIGR02169  273 LLEELNKKikdlgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  403 EKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESE------------- 469
Cdd:TIGR02169  353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSeeladlnaaiagi 432
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  470 EIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREI 549
Cdd:TIGR02169  433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  550 INRQKAEIQNVW--------------------------------------------------------DKVKAAQQLQEQ 573
Cdd:TIGR02169  513 EEVLKASIQGVHgtvaqlgsvgeryataievaagnrlnnvvveddavakeaiellkrrkagratflplNKMRDERRDLSI 592
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  574 LY----------------------------------------------------------------------------SG 577
Cdd:TIGR02169  593 LSedgvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprggilfsrSE 672
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  578 KQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQT 657
Cdd:TIGR02169  673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  658 NGDLESRllkeeelrkeeVQSLQAELSAVQTEARALSTQVEELKDEL----VTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:TIGR02169  753 IENVKSE-----------LKELEARIEELEEDLHKLEEALNDLEARLshsrIPEIQAELSKLEEEVSRIEARLREIEQKL 821
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  734 NG-NYDKDVSSMGSRSSSSGSLNARSSAEDRSPENTSSSVAVDNFPEVDK------AMLIDRIVRLQKAHARKNEKIEFM 806
Cdd:TIGR02169  822 NRlTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEeleaalRDLESRLGDLKKERDELEAQLREL 901
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  807 EDHIKQLVEEIRKKTKIIQsyVLREESGTLSSEASdfnkvHLSRRGGIMASLYTSHPADSGLTLELsLEINRKLQAV--- 883
Cdd:TIGR02169  902 ERKIEELEAQIEKKRKRLS--ELKAKLEALEEELS-----EIEDPKGEDEEIPEEELSLEDVQAEL-QRVEEEIRALepv 973
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*.
gi 1958655286  884 -------LEDTLLKNITLKENLQTLGTEIERLIKHQHELEQRTKKA 922
Cdd:TIGR02169  974 nmlaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
274-530 2.81e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 40.66  E-value: 2.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 274 TIKQLELRIEELNKEVKASKDQLvaqdvtakNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEK 353
Cdd:COG1340     9 SLEELEEKIEELREEIEELKEKR--------DELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEER 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 354 ETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNshIIKVKWAQNKLKAEVDSHKET 433
Cdd:COG1340    81 DELNEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKE--LVEKIKELEKELEKAKKALEK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 434 KDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQE-SEEIKS--NELDaKLRVTKGELEKQMQEKSDQLEMHHAKIKELED 510
Cdd:COG1340   159 NEKLKELRAELKELRKEAEEIHKKIKELAEEAQElHEEMIElyKEAD-ELRKEADELHKEIVEAQEKADELHEEIIELQK 237
                         250       260
                  ....*....|....*....|
gi 1958655286 511 LKRTFKEGMDELRTLRTKTK 530
Cdd:COG1340   238 ELRELRKELKKLRKKQRALK 257
PLN02939 PLN02939
transferase, transferring glycosyl groups
262-590 3.13e-03

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.43  E-value: 3.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 262 KKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEAR------------ 329
Cdd:PLN02939   57 KQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQlsdfqledlvgm 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 330 -QEKEAMVMKYVRGEKEALD----LRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYE---------SKEGET 395
Cdd:PLN02939  137 iQNAEKNILLLNQARLQALEdlekILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEqleklrnelLIRGAT 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 396 TR-----LARETEKLKEEMNShiikVKWAQNKLKAEVDSHKETKDKL----KETTTKLTQAKEEAEQIRQNCQDMIKTYQ 466
Cdd:PLN02939  217 EGlcvhsLSKELDVLKEENML----LKDDIQFLKAELIEVAETEERVfkleKERSLLDASLRELESKFIVAQEDVSKLSP 292
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 467 ESEEI---KSNELDAKLRVTKGELEK------QMQEKSDQLEMHHAKIKEledlKRTFKEGMDELRTLRTKTKCLEDERL 537
Cdd:PLN02939  293 LQYDCwweKVENLQDLLDRATNQVEKaalvldQNQDLRDKVDKLEASLKE----ANVSKFSSYKVELLQQKLKLLEERLQ 368
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958655286 538 RTEDELSKYREIINRQKAEIQNVWDKVKAAqqlqeqlySGKQEIEHLKEEMES 590
Cdd:PLN02939  369 ASDHEIHSYIQLYQESIKEFQDTLSKLKEE--------SKKRSLEHPADDMPS 413
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
258-472 3.43e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 41.26  E-value: 3.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  258 REELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAiqqihkeMAQRMdqanKKCDEARQEKEAMVM 337
Cdd:pfam15921  592 KAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA-------GSERL----RAVKDIKQERDQLLN 660
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  338 KYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIK-QLSQEKGRLQQL------YESKEGETTRLA----------- 399
Cdd:pfam15921  661 EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKmQLKSAQSELEQTrntlksMEGSDGHAMKVAmgmqkqitakr 740
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  400 ---------------------RETEKLKEEMN---SHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIR 455
Cdd:pfam15921  741 gqidalqskiqfleeamtnanKEKHFLKEEKNklsQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQF 820
                          250
                   ....*....|....*..
gi 1958655286  456 QNCQDMIKTyQESEEIK 472
Cdd:pfam15921  821 AECQDIIQR-QEQESVR 836
PRK01156 PRK01156
chromosome segregation protein; Provisional
253-662 4.32e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 41.04  E-value: 4.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 253 EKDNLREELKK---RTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQiHKEMAQRMDQANKKCDEAR 329
Cdd:PRK01156  250 MKNRYESEIKTaesDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHAII 328
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 330 Q---EKEAMVMKYVRGEKEALDLRKEK---ETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETE 403
Cdd:PRK01156  329 KklsVLQKDYNDYIKKKSRYDDLNNQIlelEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIK 408
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 404 KLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKL-----------TQAKEEAEQIRQNCQDMIKTYQES---E 469
Cdd:PRK01156  409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLngqsvcpvcgtTLGEEKSNHIINHYNEKKSRLEEKireI 488
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 470 EIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDE--RLRTEDELSKYR 547
Cdd:PRK01156  489 EIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRykSLKLEDLDSKRT 568
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 548 EIIN----RQKAEIQNVWDKVKAAQQLQEQLYSGKQEIE-------------------------HLKEEMESLNSLINDL 598
Cdd:PRK01156  569 SWLNalavISLIDIETNRSRSNEIKKQLNDLESRLQEIEigfpddksyidksireieneannlnNKYNEIQENKILIEKL 648
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958655286 599 QKDIEGSRKRESELLLFTEK---LTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLE 662
Cdd:PRK01156  649 RGKIDNYKKQIAEIDSIIPDlkeITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
223-721 4.43e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 40.86  E-value: 4.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 223 HSRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVT 302
Cdd:pfam05483 221 HEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 303 AKNAIQQ---IHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKE----ALDLRKEKETLERKLRDASKELEKNTNKIK 375
Cdd:pfam05483 301 IKMSLQRsmsTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAhsfvVTEFEATTCSLEELLRTEQQRLEKNEDQLK 380
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 376 QL-------SQEKGRLQQLYESKEGETTRLAR---ETEKLKEEmNSHIIKVKWAQNKLKAEVDSHKETKDK-LKETTTKL 444
Cdd:pfam05483 381 IItmelqkkSSELEEMTKFKNNKEVELEELKKilaEDEKLLDE-KKQFEKIAEELKGKEQELIFLLQAREKeIHDLEIQL 459
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 445 TQAKEEAEQIRQNCQDMiKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSD---QLEMHHAKI---------------- 505
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDL-KTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtlELKKHQEDIinckkqeermlkqien 538
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 506 ---------KELEDLKRTFKEGMDELRTLRTKT----KCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQE 572
Cdd:pfam05483 539 leekemnlrDELESVREEFIQKGDEVKCKLDKSeenaRSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 573 -----------QLYSGKQEIEHLKEEMES----LNSLINDLQKDIEGSRKRESELLLFTEK---LTSKNAQLQSEAS-SL 633
Cdd:pfam05483 619 alkkkgsaenkQLNAYEIKVNKLELELASakqkFEEIIDNYQKEIEDKKISEEKLLEEVEKakaIADEAVKLQKEIDkRC 698
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 634 QAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHAS 713
Cdd:pfam05483 699 QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778

                  ....*...
gi 1958655286 714 NVKDLSKQ 721
Cdd:pfam05483 779 NTAILKDK 786
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
343-727 5.06e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 40.79  E-value: 5.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 343 EKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQL---YESKEGETTRLARETEKLKEEmnshIIKVKWA 419
Cdd:PRK02224  198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleeHEERREELETLEAEIEDLRET----IAETERE 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 420 QNKLKAEVDSHKETKDKLKETTTK--------------LTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELD-------- 477
Cdd:PRK02224  274 REELAEEVRDLRERLEELEEERDDllaeaglddadaeaVEARREELEDRDEELRDRLEECRVAAQAHNEEAEslredadd 353
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 478 -----AKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKtkcLEDERLRTEDELSKYREIINR 552
Cdd:PRK02224  354 leeraEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN---AEDFLEELREERDELREREAE 430
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 553 QKAEIQNVWDKVKAAQQLQEQ------------------LYSGKQEIEHLKEEMESLNSLINDLQKDIE------GSRKR 608
Cdd:PRK02224  431 LEATLRTARERVEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEEVEERLEraedlvEAEDR 510
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 609 ESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESrllkEEELRKEEVQSLQAELSAVQT 688
Cdd:PRK02224  511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE----EAEEAREEVAELNSKLAELKE 586
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*..
gi 1958655286 689 EARALST------QVEELKDELVT--QRRKHASNVKDLSKQLQQARR 727
Cdd:PRK02224  587 RIESLERirtllaAIADAEDEIERlrEKREALAELNDERRERLAEKR 633
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
255-386 5.19e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 5.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  255 DNLREELKKRTETeklhMNTIKQLELRIEELNKEVKASKDQLvaqdvtakNAIQQIHKEMAQRMDQANKKCDEARQEKEA 334
Cdd:COG4913    671 AELEAELERLDAS----SDDLAALEEQLEELEAELEELEEEL--------DELKGEIGRLEKELEQAEEELDELQDRLEA 738
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1958655286  335 MVMKYVRGEKEALDLRKEKETLERKLRDASKELEkntNKIKQLSQEKGRLQQ 386
Cdd:COG4913    739 AEDLARLELRALLEERFAAALGDAVERELRENLE---ERIDALRARLNRAEE 787
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
275-375 5.32e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 40.45  E-value: 5.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 275 IKQLELRIEELNKEvkasKDQLVA-QDVTAKNAIQQIHKEMAQRMDQANKKcdEARQEKEAMVMKYVRGEKEALDLRKEK 353
Cdd:COG0542   413 LDELERRLEQLEIE----KEALKKeQDEASFERLAELRDELAELEEELEAL--KARWEAEKELIEEIQELKEELEQRYGK 486
                          90       100
                  ....*....|....*....|...
gi 1958655286 354 E-TLERKLRDASKELEKNTNKIK 375
Cdd:COG0542   487 IpELEKELAELEEELAELAPLLR 509
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
228-602 7.30e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 40.34  E-value: 7.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLE------LRIEELNKEVKASKDQLVAQDV 301
Cdd:TIGR00618  473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltrrmQRGEQTYAQLETSEEDVYHQLT 552
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  302 TAKNAIQqIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEK-------NTNKI 374
Cdd:TIGR00618  553 SERKQRA-SLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRklqpeqdLQDVR 631
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  375 KQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHK------------ETKDKLKETTT 442
Cdd:TIGR00618  632 LHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEkeqltywkemlaQCQTLLRELET 711
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  443 KLTQAKEEAEQIRQNCQDMIKTYQESEEIKS---NELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGM 519
Cdd:TIGR00618  712 HIEEYDREFNEIENASSSLGSDLAAREDALNqslKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN 791
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  520 DELRTLRTKTKCLEDE--RLRTEDELSKYREIINRQK----------------AEIQNVWDKVKAAQQLQEQLYSGKQEI 581
Cdd:TIGR00618  792 RLREEDTHLLKTLEAEigQEIPSDEDILNLQCETLVQeeeqflsrleeksatlGEITHQLLKYEECSKQLAQLTQEQAKI 871
                          410       420
                   ....*....|....*....|.
gi 1958655286  582 EHLKEEMESLNSLINDLQKDI 602
Cdd:TIGR00618  872 IQLSDKLNGINQIKIQFDGDA 892
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
228-635 7.99e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 39.75  E-value: 7.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHM--NTIKQLELRIEELNKEVkaskDQLVAQDVTAKN 305
Cdd:COG4717    85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERL----EELEERLEELRE 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 306 AIQQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALD-LRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRL 384
Cdd:COG4717   161 LEEEL-EELEAELAELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 385 QQLYESKEGETTRLA-------RETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQN 457
Cdd:COG4717   240 ALEERLKEARLLLLIaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 458 CQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEmhHAKIKELEDLKRTF--KEGMDELRTLRTKTKcLEDE 535
Cdd:COG4717   320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEIAALlaEAGVEDEEELRAALE-QAEE 396
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 536 RLRTEDELSKYREIINRQKAEIQNVWDKVKAAqQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIE--GSRKRESELL 613
Cdd:COG4717   397 YQELKEELEELEEQLEELLGELEELLEALDEE-ELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELL 475
                         410       420
                  ....*....|....*....|..
gi 1958655286 614 LFTEKLTSKNAQLQSEASSLQA 635
Cdd:COG4717   476 QELEELKAELRELAEEWAALKL 497
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
491-607 8.19e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 39.23  E-value: 8.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  491 MQEKSDQLEMHHAKIKEL-EDLKRTFKEGMDELRTLRTKTKCLEDERlrtEDELSKYREIINRQKAEIQNvwdKVKAAQQ 569
Cdd:smart00787 156 LKEDYKLLMKELELLNSIkPKLRDRKDALEEELRQLKQLEDELEDCD---PTELDRAKEKLKKLLQEIMI---KVKKLEE 229
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1958655286  570 LQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
358-731 8.61e-03

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 39.84  E-value: 8.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 358 RKLRDASKELEKNTNKIKQLS--QEKGRLQQLyeSKEGET-TRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHK--E 432
Cdd:pfam06160   6 KKIYKEIDELEERKNELMNLPvqEELSKVKKL--NLTGETqEKFEEWRKKWDDIVTKSLPDIEELLFEAEELNDKYRfkK 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 433 TKDKLKETTTKLTQAKEEAEQIRQNCQDMIktyqESEEIKSNELDaKLRVTKGELEKQMQEKSDQ----LEMHHAKIKEL 508
Cdd:pfam06160  84 AKKALDEIEELLDDIEEDIKQILEELDELL----ESEEKNREEVE-ELKDKYRELRKTLLANRFSygpaIDELEKQLAEI 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 509 EDLKRTFKEGM---------DELRTLRTKTKCLED---------ERLRTE--DELSKYREIINRQKA------------E 556
Cdd:pfam06160 159 EEEFSQFEELTesgdylearEVLEKLEEETDALEElmedipplyEELKTElpDQLEELKEGYREMEEegyalehlnvdkE 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 557 IQNVWDKVKAAQQLQEQLysgkqEIEHLKEEMESLNSLINDLQKDIEG-------SRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:pfam06160 239 IQQLEEQLEENLALLENL-----ELDEAEEALEEIEERIDQLYDLLEKevdakkyVEKNLPEIEDYLEHAEEQNKELKEE 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 630 ASSLQaqvDSLSCSESQLQSQcehmKQTNGDLESRLLKEEELRKEEVQSLQAeLSAVQTEARALSTQVEELKDELVtqrr 709
Cdd:pfam06160 314 LERVQ---QSYTLNENELERV----RGLEKQLEELEKRYDEIVERLEEKEVA-YSELQEELEEILEQLEEIEEEQE---- 381
                         410       420
                  ....*....|....*....|..
gi 1958655286 710 KHASNVKDLSKQLQQARRKLDQ 731
Cdd:pfam06160 382 EFKESLQSLRKDELEAREKLDE 403
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
252-541 8.65e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 40.02  E-value: 8.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 252 SEKDNLREELKKRTETeklhmntIKQLELRIEELNKEVKASKDQLVAQDV-------TAKNAIQQIHKEMAQRMDQANKK 324
Cdd:PRK02224  419 EERDELREREAELEAT-------LRTARERVEEAEALLEAGKCPECGQPVegsphveTIEEDRERVEELEAELEDLEEEV 491
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 325 cdEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEK 404
Cdd:PRK02224  492 --EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286 405 LKEEMNshiikvkwAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEI------KSNELDA 478
Cdd:PRK02224  570 AREEVA--------ELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERlaekreRKRELEA 641
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958655286 479 KL--------RVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTED 541
Cdd:PRK02224  642 EFdearieeaREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEA 712
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
443-640 8.70e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 8.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  443 KLTQAKEEAEQIRQNCQDMIKTYQESEEIKsNELDAKLRVTKGELEKQMQEksDQLEMHHAKIKELEDLKRTFKEGMDEL 522
Cdd:COG4913    611 KLAALEAELAELEEELAEAEERLEALEAEL-DALQERREALQRLAEYSWDE--IDVASAEREIAELEAELERLDASSDDL 687
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  523 RTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEI------EHLKEEM--ESLNSL 594
Cdd:COG4913    688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleERFAAALgdAVEREL 767
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1958655286  595 INDLQKDIEGSRKRESELL-LFTEKLTSKNAQLQSEASSLQAQVDSL 640
Cdd:COG4913    768 RENLEERIDALRARLNRAEeELERAMRAFNREWPAETADLDADLESL 814
COG5022 COG5022
Myosin heavy chain [General function prediction only];
473-724 9.82e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 39.68  E-value: 9.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  473 SNELDAKLRVTKGELEKQMQEKS-DQLEMHHAKIKELEDLKRTFKEGMDELRtLRTKTKcLEDERLRTEDELSKYREIIN 551
Cdd:COG5022    819 IIKLQKTIKREKKLRETEEVEFSlKAEVLIQKFGRSLKAKKRFSLLKKETIY-LQSAQR-VELAERQLQELKIDVKSISS 896
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  552 RQKAEIQNVWDKVKAAQQLQEQLysgKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLftEKLTSKNAQLQSEAS 631
Cdd:COG5022    897 LKLVNLELESEIIELKKSLSSDL---IENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPEL--NKLHEVESKLKETSE 971
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655286  632 SLQAQVDSLSCSESQLQSQCEHMKQTNGDLE--SRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELK--DELVTQ 707
Cdd:COG5022    972 EYEDLLKKSTILVREGNKANSELKNFKKELAelSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSilKPLQKL 1051
                          250
                   ....*....|....*..
gi 1958655286  708 RRKHASNVKDLSKQLQQ 724
Cdd:COG5022   1052 KGLLLLENNQLQARYKA 1068
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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