|
Name |
Accession |
Description |
Interval |
E-value |
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
226-734 |
4.00e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.56 E-value: 4.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 226 YLQQELTIQQLIKENKNHQELILN----ICSEKDNLREEL---KKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVA 298
Cdd:PRK03918 184 FIKRTENIEELIKEKEKELEEVLReineISSELPELREELeklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 299 QDVTAKNAIQQIH--KEMAQRMDQANKKCDEAR---QEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASK---ELEKN 370
Cdd:PRK03918 264 LEERIEELKKEIEelEEKVKELKELKEKAEEYIklsEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEkeeRLEEL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 371 TNKIKQLSQEKGRLQ---QLYE---SKEGETTRL-ARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTK 443
Cdd:PRK03918 344 KKKLKELEKRLEELEerhELYEeakAKKEELERLkKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 444 LTQAKEEAEQIRQNCQDMIKTYQESEEiksNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLK------RTFKE 517
Cdd:PRK03918 424 LKKAIEELKKAKGKCPVCGRELTEEHR---KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkeselIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 518 GMDELRTLRTKTKCLEDERL-RTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLIN 596
Cdd:PRK03918 501 LAEQLKELEEKLKKYNLEELeKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 597 DLQ-KDIEGSRKRESELllftEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEE 675
Cdd:PRK03918 581 ELGfESVEELEERLKEL----EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655280 676 VQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:PRK03918 657 SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
252-718 |
1.33e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 252 SEKDNLREELKKRTETEKLHMNTIK----QLELRIEELNKEVKASKDQLVAQDVTAKnAIQQIHKEMAQRMDQANKKCDE 327
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKkkaeEAKKAAEAAKAEAEAAADEAEAAEEKAE-AAEKKKEEAKKKADAAKKKAEE 1389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 328 ARQEKEAM------------VMKYVRGEKEALDLRKEKETlERKLRDASKELE--KNTNKIKQLSQEKGRLQQLyeSKEG 393
Cdd:PTZ00121 1390 KKKADEAKkkaeedkkkadeLKKAAAAKKKADEAKKKAEE-KKKADEAKKKAEeaKKADEAKKKAEEAKKAEEA--KKKA 1466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 394 ETTRLARETEKLKEEM-NSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEI- 471
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAkKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKk 1546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 472 KSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDE-------LS 544
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEakikaeeLK 1626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 545 KYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK------RESELLLFTEK 618
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKaaealkKEAEEAKKAEE 1706
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 619 LTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQtngdlESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQV- 697
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK-----KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVi 1781
|
490 500
....*....|....*....|..
gi 1958655280 698 -EELKDELVTQRRKHASNVKDL 718
Cdd:PTZ00121 1782 eEELDEEDEKRRMEVDKKIKDI 1803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
247-598 |
1.50e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 247 ILNICSEKDNLREElkkrteteklhmntIKQLELRIEELNKEVKASKDQLvaqdvtaknaiqqihkemaqrmDQANKKCD 326
Cdd:TIGR02168 672 ILERRREIEELEEK--------------IEELEEKIAELEKALAELRKEL----------------------EELEEELE 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 407 EEMNShiikVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKtyQESEEIKSNELD-AKLRVTKG 485
Cdd:TIGR02168 796 EELKA----LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE--ELSEDIESLAAEiEELEELIE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 486 ELEKQMQEKSDQLEMHHAKIKELEDLKRTFkegMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVK 565
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEEL---SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
330 340 350
....*....|....*....|....*....|....*...
gi 1958655280 566 AAQQLQEQLYSGKQ-----EIEHLKEEMESLNSLINDL 598
Cdd:TIGR02168 947 EEYSLTLEEAEALEnkiedDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-734 |
1.39e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 400 RETEKLKEEMNSHIIKVKWAQNKLKAEVDS----------HKETKDKLKET-----TTKLTQAKEEAEQIRQNCQDMIKT 464
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSlerqaekaerYKELKAELRELelallVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 465 YQESEEiKSNELDAKL---RVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEgmdELRTLRTKTKCLEDERLRTED 541
Cdd:TIGR02168 255 LEELTA-ELQELEEKLeelRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE---RLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 542 ELSKYREIINRQKAEIQnvwdkvkaaqQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTS 621
Cdd:TIGR02168 331 KLDELAEELAELEEKLE----------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 622 KNAQLQSEASSLQAQVDSLSCSESQLqsqcehmkqtngdLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELK 701
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEEL-------------LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
330 340 350
....*....|....*....|....*....|...
gi 1958655280 702 DELVTQRRKhasnVKDLSKQLQQARRKLDQTEN 734
Cdd:TIGR02168 468 EELEEAEQA----LDAAERELAQLQARLDSLER 496
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
225-733 |
2.64e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 2.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 225 RYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLhmntIKQLELRIEELNKEVKASKDQL--VAQDVT 302
Cdd:PRK03918 149 KVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEEL----IKEKEKELEEVLREINEISSELpeLREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 303 AKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKlrdaskelEKNTNKIKQLSQEKG 382
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 383 RLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKlKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMI 462
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 463 KTYQESEEIKSNELDAKLRvtkgELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRtlRTKTKCLEDERLRTEDE 542
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELE----ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK--KAKGKCPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 543 lskYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIE-----------------HLKEEMESLNSL-INDLQKDIEG 604
Cdd:PRK03918 450 ---RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlkkeseliklkelaeQLKELEEKLKKYnLEELEKKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 605 SRKRESELLlfteKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQA--- 681
Cdd:PRK03918 527 YEKLKEKLI----KLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyn 602
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655280 682 ---ELSAVQTEARALSTQVEELKDELVTQRRKHA---SNVKDLSKQLQQARRKLDQTE 733
Cdd:PRK03918 603 eylELKDAEKELEREEKELKKLEEELDKAFEELAeteKRLEELRKELEELEKKYSEEE 660
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
183-832 |
3.89e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 3.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 183 DDLLGEIESEL----LSAELAEE-HQVPNGVNKGEHALALFE-KCVHSRYLQQELTIQQLIKENKNH-------QELILN 249
Cdd:TIGR02168 192 EDILNELERQLksleRQAEKAERyKELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELtaelqelEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 250 ICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLV------AQDVTAKNAIQQIHKEMAQRMDQANK 323
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEeleaqlEELESKLDELAEELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 324 KCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKI----KQLSQEKGRLQQLYESKEGETTRLA 399
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIerleARLERLEDRRERLQQEIEELLKKLE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 400 R-ETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCqDMIKTYQESEEIKSNELDA 478
Cdd:TIGR02168 432 EaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL-DSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 479 -----------------KLRVTKG---ELEKQMQEKSDQLEMHHAK--------IKELEDLKRTFKE----GMDELRTLR 526
Cdd:TIGR02168 511 llknqsglsgilgvlseLISVDEGyeaAIEAALGGRLQAVVVENLNaakkaiafLKQNELGRVTFLPldsiKGTEIQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 527 TKTKCLEDERLRTEDELSKYREIINRQKAEIQN---VWDKVKAAQQLQEQLYSG-------------------------- 577
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlVVDDLDNALELAKKLRPGyrivtldgdlvrpggvitggsaktns 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 578 -----KQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCE 652
Cdd:TIGR02168 671 silerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 653 HMKQTNGDLEsrllKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHAS---NVKDLSKQLQQARRKL 729
Cdd:TIGR02168 751 QLSKELTELE----AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElraELTLLNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 730 DQTENGNYDK-----DVSSMGSRSSSSGSLNARSSAEDRSPENTSSSVAVDNfpEVDKAMLIDRIVRLQKAHARKNEKIE 804
Cdd:TIGR02168 827 ESLERRIAATerrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL--LNERASLEEALALLRSELEELSEELR 904
|
730 740
....*....|....*....|....*...
gi 1958655280 805 FMEDHIKQLVEEIRKKTKIIQSYVLREE 832
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLE 932
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
233-517 |
2.27e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 233 IQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIH- 311
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSv 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 312 -----KEMAQRMDQANKKCDE-------ARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQ 379
Cdd:TIGR04523 452 keliiKNLDNTRESLETQLKVlsrsinkIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 380 EKGRlqqlyesKEGETTRLARETEKLKEEMNShiikvkwaqNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQ 459
Cdd:TIGR04523 532 EKKE-------KESKISDLEDELNKDDFELKK---------ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958655280 460 DMIKTY---QESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKE 517
Cdd:TIGR04523 596 KEKKDLikeIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
233-656 |
2.27e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 233 IQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQlvaqdvtaknAIQQIHK 312
Cdd:TIGR04523 241 INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ----------KEQDWNK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 313 EMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKE 392
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 393 GETTRLARE---TEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcqdmIKTYQESE 469
Cdd:TIGR04523 391 SQINDLESKiqnQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN----LDNTRESL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 470 EIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREI 549
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 550 INRQKAEIQNvwdkvkaaQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:TIGR04523 547 LNKDDFELKK--------ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
410 420
....*....|....*....|....*..
gi 1958655280 630 ASSLQAQVDSLSCSESQLQSQCEHMKQ 656
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
327-639 |
2.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:COG1196 208 QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 407 EEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcqdmiktyQESEEIKSNELDAKLRVTKGE 486
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--------LEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 487 LEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKA 566
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958655280 567 AQQLQEQLysgKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDS 639
Cdd:COG1196 440 EEEALEEA---AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
352-702 |
5.99e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 5.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 352 EKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEgETTRLARETEKLKEEMNSHIIKVKWAQ-NKLKAEVDSH 430
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEGYELLKEKEALERQkEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 431 KETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELED 510
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 511 LKRTFKEGMDELRtlrtktKCLEDERLRTE---DELSKYREIINRQKAEIQnvwDKVKAAQQLQEQLYSGKQEIEHLKEE 587
Cdd:TIGR02169 330 EIDKLLAEIEELE------REIEEERKRRDkltEEYAELKEELEDLRAELE---EVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 588 MESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESrllk 667
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE---- 476
|
330 340 350
....*....|....*....|....*....|....*
gi 1958655280 668 EEELRKEEVQSLQAELSAVQTEARALSTQVEELKD 702
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
259-820 |
6.11e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 6.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 259 EELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMK 338
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 339 YVRGE--KEALDLRKEKETleRKLRDASK-ELEKNTNKIKQLSQEKGRLQQLYESKEgETTRLARETEKLKEEMNShiiK 415
Cdd:PTZ00121 1271 AIKAEeaRKADELKKAEEK--KKADEAKKaEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAAKKKAEEAKK---A 1344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 416 VKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKtyqeSEEIKSNELDAKLRVTKGELEKQMQEKS 495
Cdd:PTZ00121 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK----ADEAKKKAEEDKKKADELKKAAAAKKKA 1420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 496 DQLEMHHAKIKELEDLKRTFKEG--MDELRTLRTKTKCLEDERLRTEDElskyreiinRQKAEIQNVWDKVKAAQQLQEQ 573
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEA---------KKADEAKKKAEEAKKADEAKKK 1491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 574 LYSGKQEIEHLKEEMESLNSLinDLQKDIEGSRKREsELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEH 653
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKA--DEAKKAEEAKKAD-EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 654 MKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQV-----EELKDELVTQRRKHASNVKDLSKQLQQARRK 728
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 729 LDQTENGNYDKDVSSMGSRSSSSGslNARSSAEDRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMED 808
Cdd:PTZ00121 1649 AEELKKAEEENKIKAAEEAKKAEE--DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
|
570
....*....|..
gi 1958655280 809 HIKQLVEEIRKK 820
Cdd:PTZ00121 1727 ENKIKAEEAKKE 1738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
275-603 |
7.28e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 7.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 275 IKQLELRIEELNKEVKASKDQLvaqdvtaknAIQQIHKEMAQRMDQANKKCDEARQ-----EKEAMVMKYVRGEKEALDL 349
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQL---------ERLRREREKAERYQALLKEKREYEGyellkEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 350 RKEKETLERKLRDASKE-------LEKNTNKIKQL-SQEKGRLQQLYESKEGETTRLARETEKLKEEMNshiiKVKWAQN 421
Cdd:TIGR02169 250 EEELEKLTEEISELEKRleeieqlLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELE----DAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 422 KLKAEVDSHKETKDKLKEtttKLTQAKEEAEQIRQNCQDMIKTYQESEEiKSNELDAKLRVTKGELeKQMQEKSDQLemh 501
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELER---EIEEERKRRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDEL-KDYREKLEKL--- 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 502 hakIKELEDLKRTFKEGMDELRTLRTKtkcLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEI 581
Cdd:TIGR02169 398 ---KREINELKRELDRLQEELQRLSEE---LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340
....*....|....*....|..
gi 1958655280 582 EHLKEEMESLNSLINDLQKDIE 603
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELA 493
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
431-731 |
9.84e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 9.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 431 KETKDKLKETTTKLTQA--------------KEEAEQIRQNcqdmiKTYQESEEIKSNEL----DAKLRVTKGELEKQMQ 492
Cdd:COG1196 175 EEAERKLEATEENLERLedilgelerqleplERQAEKAERY-----RELKEELKELEAELlllkLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 493 EKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKtkcLEDERLRTEDELSKYREIINRQKAEIQNVwdkVKAAQQLQE 572
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEE---AQAEEYELLAELARLEQDIARLEERRREL---EERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 573 QLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCE 652
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655280 653 HMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKdELVTQRRKHASNVKDLSKQLQQARRKLDQ 731
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA-ELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
276-640 |
1.28e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 276 KQLELRIEELNKEVKASKDQLvaqdvtakNAIQQIHKEMAQRMDQANKKCDEARQEKEAMvmkyvrgEKEALDLRKEKET 355
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKREL--------SSLQSELRRIENRLDELSQELSDASRKIGEI-------EKEIEQLEQEEEK 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 356 LERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQ-NKLKAEVDSHKETK 434
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 435 DKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDaklrvtkgELEKQMQEKSDQLEMHHAKIKELEDLKRT 514
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE--------NLNGKKEELEEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 515 FKEGMDElrtLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSG----------KQEIEHL 584
Cdd:TIGR02169 887 LKKERDE---LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsledvQAELQRV 963
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655280 585 KEEMESLNSLINDLQKDIEGSRKRESElllftekLTSKNAQLQSEASSLQAQVDSL 640
Cdd:TIGR02169 964 EEEIRALEPVNMLAIQEYEEVLKRLDE-------LKEKRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-733 |
3.10e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAI 307
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 308 QQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQL 387
Cdd:COG1196 330 EEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 388 YESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRqncqdmiktyQE 467
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE----------AA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 468 SEEIKSNELDAKLRVtkgELEKQMQEKSDQLEMHHAKIKELEDLKRtfkeGMDELRTLRTKTKCLEDERLRTEDELSKYR 547
Cdd:COG1196 479 LAELLEELAEAAARL---LLLLEAEADYEGFLEGVKAALLLAGLRG----LAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 548 EIINRQKAEIQNVWDKVKAA-----QQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSK 622
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAgratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 623 NAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKD 702
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510
....*....|....*....|....*....|.
gi 1958655280 703 ELVTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELL 742
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
229-734 |
5.09e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 229 QELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNaiq 308
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK--- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 309 qIHKEMAQRMDQANKKcdearqekeamvmkyvrgEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLY 388
Cdd:TIGR04523 108 -INSEIKNDKEQKNKL------------------EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQK 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 389 ESKEGETTRLARETEKLKEEMNshiiKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQES 468
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNID----KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 469 EEIKSNeLDAKLRVTKGELEK---QMQEKSDQLEMHHAKIKELEDLKRTFKEGMDEL---------RTLRTKTKCLEDER 536
Cdd:TIGR04523 245 TTEISN-TQTQLNQLKDEQNKikkQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLnnqkeqdwnKELKSELKNQEKKL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 537 LRTEDELSKYREIINRQKAEIQN----VWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESEL 612
Cdd:TIGR04523 324 EEIQNQISQNNKIISQLNEQISQlkkeLTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 613 LLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARA 692
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1958655280 693 LSTQVEELK------DELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:TIGR04523 484 LEQKQKELKskekelKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
224-612 |
8.55e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 8.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 224 SRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHmNTIKQLELRIEELNK---------------E 288
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKrltgltpeklekeleE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 289 VKASKDQLVAQDVTAKNAIQQIHKEMAQRMD------QANKKCDEARQE-----KEAMVMKYVRGEKEALDLRKEKETLE 357
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKaieelkKAKGKCPVCGRElteehRKELLEEYTAELKRIEKELKEIEEKE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 358 RKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEG-------ETTRLARETEKLKEEMnshiIKVKWAQNKLKAEVDSH 430
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKlkkynleELEKKAEEYEKLKEKL----IKLKGEIKSLKKELEKL 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 431 KETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDA------KLRVTKGELEKQMQEKSDQLEMHHAK 504
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKA 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 505 IKELEDLKRTFKEGMDELRTLRTKTKclEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHL 584
Cdd:PRK03918 632 FEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
410 420
....*....|....*....|....*...
gi 1958655280 585 KEEMESLNSLINDLQKDIEGSRKRESEL 612
Cdd:PRK03918 710 KKELEKLEKALERVEELREKVKKYKALL 737
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
222-681 |
1.17e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 222 VHSRYLQQELTIQQLIKENKNHQELILNIcSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDV 301
Cdd:TIGR04523 192 IKNKLLKLELLLSNLKKKIQKNKSLESQI-SELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 302 TAKNAIQQIHKEMAQRMDQANK---KCDEARQEKEAMVMKyvrgekealDLRKEKETLERKLRDASKELEKNTNKIKQLS 378
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQlksEISDLNNQKEQDWNK---------ELKSELKNQEKKLEEIQNQISQNNKIISQLN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 379 QEKGRLQQLYESKEGETTRLARETEKLKEEMNshiikvkwaqnKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNC 458
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRELEEKQNEIE-----------KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQK 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 459 QDMIKTYQESEEIKSNELDaKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDEL----RTLRTKTKCLED 534
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIE-RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsrsiNKIKQNLEQKQK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 535 ERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIE----HLKEEMESLNS---------LINDLQKD 601
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKEskisDLEDELNKDDFelkkenlekEIDEKNKE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 602 IEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQA 681
Cdd:TIGR04523 570 IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
281-729 |
1.19e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.01 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 281 RIEELNKEVKASKDQlvaqdVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMvmkyvRGEKEALDLRKEKETLERKL 360
Cdd:COG4717 72 ELKELEEELKEAEEK-----EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 361 RDASKELEKNTNKIKQLSQEKGRLQQLyeskegeTTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKET 440
Cdd:COG4717 142 AELPERLEELEERLEELRELEEELEEL-------EAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 441 TTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIK--------ELEDLK 512
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFlvlgllalLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 513 RTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLN 592
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 593 SLINDLQKDIEGSRKRESELLLF---TEKLTSKNAQLQSEASSLQAQVDSLSCS--ESQLQSQCEHMKQTNGDLEsrllk 667
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYqelKEELEELEEQLEELLGELEELLEALDEEelEEELEELEEELEELEEELE----- 449
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958655280 668 eeeLRKEEVQSLQAELSAVQTEAR--ALSTQVEELKDELVTQRRKHASNVKdLSKQLQQARRKL 729
Cdd:COG4717 450 ---ELREELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALKL-ALELLEEAREEY 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
262-920 |
9.89e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 9.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 262 KKRTETEKLHMNTIKQLElRIEELNKEVKASKDQLVAQDVTA------KNAIQQIHKEM-AQRMDQANKKCDEARQEKEA 334
Cdd:TIGR02168 172 ERRKETERKLERTRENLD-RLEDILNELERQLKSLERQAEKAerykelKAELRELELALlVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 335 MVMKYVRGEKEA-------LDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKG-------RLQQLYESKEGETTRLAR 400
Cdd:TIGR02168 251 AEEELEELTAELqeleeklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQilrerlaNLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 401 ETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcQDMIKTYQESEEIKSNELDAKL 480
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK-VAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 481 RVTKGELEKQMQEKSDQLEMHHAKikELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNV 560
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 561 WDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLL----FTEKLTSKNAQLQSEASSLQAQ 636
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggRLQAVVVENLNAAKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 637 VDSL--------SCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAV---------------------- 686
Cdd:TIGR02168 568 NELGrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 687 -------------------QTEARALSTQVEelKDELVTQRRKHASNVKDLSKQLQQARRKLDQTENGNYDKDVSSMGSR 747
Cdd:TIGR02168 648 vtldgdlvrpggvitggsaKTNSSILERRRE--IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 748 SSSSGSLNARSSAEDRSpENTSSSVAVDNFPEVDkamLIDRIVRLQKAHARKNEKIEFMEDHIKQLVEEIRKktkiiqsy 827
Cdd:TIGR02168 726 RQISALRKDLARLEAEV-EQLEERIAQLSKELTE---LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ-------- 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 828 vLREESGTLSSEASDFNKVH--LSRRGGIMASLYTSHPADSGLTlELSLEINRKLQAVLEDTLLKNITLKENLQTLGTEI 905
Cdd:TIGR02168 794 -LKEELKALREALDELRAELtlLNEEAANLRERLESLERRIAAT-ERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
730
....*....|....*
gi 1958655280 906 ERliKHQHELEQRTK 920
Cdd:TIGR02168 872 ES--ELEALLNERAS 884
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
390-704 |
1.11e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 390 SKEGETTRLARETE--KLKEEMNSHIIKVKWAQNKLKaevdshkETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQ- 466
Cdd:TIGR02168 665 SAKTNSSILERRREieELEEKIEELEEKIAELEKALA-------ELRKELEELEEELEQLRKELEELSRQISALRKDLAr 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 467 -ESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELED----LKRTFKEGMDELRTLRTKTKCLEDERLRTED 541
Cdd:TIGR02168 738 lEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAeieeLEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 542 EL----SKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTE 617
Cdd:TIGR02168 818 EAanlrERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 618 KLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQV 697
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
....*..
gi 1958655280 698 EELKDEL 704
Cdd:TIGR02168 978 ENKIKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
275-734 |
3.11e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 3.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 275 IKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQA-NKKCDEARQ--EKEAMVMKYVRGEKEALDLRK 351
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArNQNSMYMRQlsDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 352 EK-ETLERKLRDASKELEKNTNKIKQLSQEKG----RLQQLYESKEGETTRLARETEKLK-----EEMNSHIIkvkwaqN 421
Cdd:pfam15921 342 DKiEELEKQLVLANSELTEARTERDQFSQESGnlddQLQKLLADLHKREKELSLEKEQNKrlwdrDTGNSITI------D 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 422 KLKAEVDSHKETKDKLKETttkLTQAKEEAEQIRQNCQDMIKTYQESEEiKSNELDAKLRVTKGELEKQMQEKSdqlemh 501
Cdd:pfam15921 416 HLRRELDDRNMEVQRLEAL---LKAMKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELT------ 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 502 hAKIKELEDLKRTFKegmDELRTLRTKTKCLEderlRTEDELSKYREIINRQKAEIQ---NVWDKVKAAQQ----LQEQL 574
Cdd:pfam15921 486 -AKKMTLESSERTVS---DLTASLQEKERAIE----ATNAEITKLRSRVDLKLQELQhlkNEGDHLRNVQTeceaLKLQM 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 575 YSGKQEIEHLKEEMESLNSLIND--------------LQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSL 640
Cdd:pfam15921 558 AEKDKVIEILRQQIENMTQLVGQhgrtagamqvekaqLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 641 SCSESQLQSQCEHMKQTNGDLESrllkeeelrkeevqslqaELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSK 720
Cdd:pfam15921 638 VNAGSERLRAVKDIKQERDQLLN------------------EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM 699
|
490
....*....|....
gi 1958655280 721 QLQQARRKLDQTEN 734
Cdd:pfam15921 700 QLKSAQSELEQTRN 713
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
253-629 |
6.10e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 6.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 253 EKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEK 332
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAE 1191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 333 EAMVMKYVRGEKEAldlRKEKEtlERKLRDASK-ELEKNTNKIKQLSQEKGRLQqlyESKEGETTRLARETEKLKEEMNS 411
Cdd:PTZ00121 1192 ELRKAEDARKAEAA---RKAEE--ERKAEEARKaEDAKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRKFEEARMA 1263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 412 HIIKVKWA-QNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKtyqeSEEIKSNELDAKLRVTKGELEKQ 490
Cdd:PTZ00121 1264 HFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK----ADEAKKKAEEAKKKADAAKKKAE 1339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 491 MQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLE----DERLRTEDELSKYREIINRQKAEIQNVWDKVKA 566
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakkkAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958655280 567 AQQLQEQLYSGKQEIEHLKEEMESLNSliNDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:PTZ00121 1420 ADEAKKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
271-517 |
6.37e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 53.09 E-value: 6.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 271 HMNTIkqLELRIEELNKEVKAskdqlvaQDVTAKNAIQQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVrgeKEALDLR 350
Cdd:PHA02562 167 EMDKL--NKDKIRELNQQIQT-------LDMKIDHIQQQI-KTYNKNIEEQRKKNGENIARKQNKYDELV---EEAKTIK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 351 KEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGEttrlaretEKLKEEmnsHIIKVKWAQNkLKAEVDSH 430
Cdd:PHA02562 234 AEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV--------IKMYEK---GGVCPTCTQQ-ISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 431 KETKDKLKETTTKLTQAK---EEAEQIRQNCQDMIKTYQE-SEEIKSNELDAKLRVTKG-ELEKQMQEKSDQLEMHHAKI 505
Cdd:PHA02562 302 TKIKDKLKELQHSLEKLDtaiDELEEIMDEFNEQSKKLLElKNKISTNKQSLITLVDKAkKVKAAIEELQAEFVDNAEEL 381
|
250
....*....|...
gi 1958655280 506 KEL-EDLKRTFKE 517
Cdd:PHA02562 382 AKLqDELDKIVKT 394
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
252-607 |
7.50e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.52 E-value: 7.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 252 SEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKdqlvaqdvtAKNAIQQIhKEMAQRMDQANKKCDEARQE 331
Cdd:TIGR01612 1318 SDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNK---------IKKIIDEV-KEYTKEIEENNKNIKDELDK 1387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 332 KEAMVMKYvrgeKEALDLRKEKETLERKLRDasKELEKNTNKIKQ-----LSQEKGRLQQLYESKE-GETTRLARETEKL 405
Cdd:TIGR01612 1388 SEKLIKKI----KDDINLEECKSKIESTLDD--KDIDECIKKIKElknhiLSEESNIDTYFKNADEnNENVLLLFKNIEM 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 406 KEEMNSHIIKVK---------WAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEeiksneL 476
Cdd:TIGR01612 1462 ADNKSQHILKIKkdnatndhdFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALA------I 1535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 477 DAKLRVTKGELEKQMQEKSD-------QLEMHHAKIKELEDLKRTFKEGMDE--------------LRTLRTKTKCLEDE 535
Cdd:TIGR01612 1536 KNKFAKTKKDSEIIIKEIKDahkkfilEAEKSEQKIKEIKKEKFRIEDDAAKndksnkaaidiqlsLENFENKFLKISDI 1615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 536 RLRTEDELSKYREI--------INRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:TIGR01612 1616 KKKINDCLKETESIekkissfsIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKK 1695
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
275-735 |
9.10e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 9.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 275 IKQLElRIEELNKEVKASKDQLVAQDvTAKNAIQqiHKEMAQRMDQANKKCDEARQEKEamvmkyvRGEKEALDLRKEKE 354
Cdd:COG4913 251 IELLE-PIRELAERYAAARERLAELE-YLRAALR--LWFAQRRLELLEAELEELRAELA-------RLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 355 TLERKLRDASKELEKN-TNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKET 433
Cdd:COG4913 320 ALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEE 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 434 KDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESeeiKSNeLDAKLRVTKGELEKQMQEKSDQLEMhhakIKELEDLK- 512
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLERR---KSN-IPARLLALRDALAEALGLDEAELPF----VGELIEVRp 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 513 -------------RTFK-----------------EGMD---ELRTLRTKTKCLEDERLRTED---------ELSKYREII 550
Cdd:COG4913 472 eeerwrgaiervlGGFAltllvppehyaaalrwvNRLHlrgRLVYERVRTGLPDPERPRLDPdslagkldfKPHPFRAWL 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 551 NRQKAEIQNVWdKVKAAQQLQE---------QLYSG----------------------KQEIEHLKEEMESLNSLINDLQ 599
Cdd:COG4913 552 EAELGRRFDYV-CVDSPEELRRhpraitragQVKGNgtrhekddrrrirsryvlgfdnRAKLAALEAELAELEEELAEAE 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 600 KDIEGSRKREselllftEKLTSKNAQLQSEASSLQAQVDSLSCSE--SQLQSQCEHMKQTNGDLESrllkeeelrkeevq 677
Cdd:COG4913 631 ERLEALEAEL-------DALQERREALQRLAEYSWDEIDVASAEReiAELEAELERLDASSDDLAA-------------- 689
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655280 678 sLQAELSAVQTEARALstqvEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTENG 735
Cdd:COG4913 690 -LEEQLEELEAELEEL----EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
273-493 |
1.62e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 273 NTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIhKEMAQRMDQANKKCDEARQEKEAMvmkyvrgEKEALDLRKE 352
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-AALERRIAALARRIRALEQELAAL-------EAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 353 KETLERKLRDASKELEKNTNKIKQLSQEkGRLQQLYESKE-GETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHK 431
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQ-PPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958655280 432 ETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKgELEKQMQE 493
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-ELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
306-509 |
1.77e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 306 AIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQ 385
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 386 QLYESKEGETTRLARETEKLK--------------EEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEA 451
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGrqpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655280 452 EQIRQNCQDMIKTYQESEEIKsNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELE 509
Cdd:COG4942 177 EALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
445-712 |
2.08e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 445 TQAKEEAEQIRQNCQDM------IKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEG 518
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLkrelssLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 519 MDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKA--------EIQNVWDKVK--------AAQQLQEQLYSGKQEIE 582
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlshsripEIQAELSKLEeevsrieaRLREIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 583 HLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLE 662
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958655280 663 S---RLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHA 712
Cdd:TIGR02169 910 AqieKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-729 |
2.48e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 490 QMQEKSDQLEMHHAKIKELEDLKRTFkegmDELRTLRTKTKCLEDERlRTEDELSKYREIINRQKAEIQNVWdkVKAAQQ 569
Cdd:COG4913 216 YMLEEPDTFEAADALVEHFDDLERAH----EALEDAREQIELLEPIR-ELAERYAAARERLAELEYLRAALR--LWFAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 570 LQEQLysgKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLftEKLTSKN---AQLQSEASSLQAQVDSLSCSESQ 646
Cdd:COG4913 289 RLELL---EAELEELRAELARLEAELERLEARLDALREELDELEA--QIRGNGGdrlEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 647 LQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHAS---NVKDLSKQLQ 723
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASlerRKSNIPARLL 443
|
....*.
gi 1958655280 724 QARRKL 729
Cdd:COG4913 444 ALRDAL 449
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
227-409 |
3.07e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 227 LQQELtiQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAqdvtAKNA 306
Cdd:COG4942 25 AEAEL--EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE----LRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 307 IQQIHKEMAQRMDQANKK------------CDEARQEKEAMVMKYVRGE--KEALDLRKEKETLERKLRDASKELEKNTN 372
Cdd:COG4942 99 LEAQKEELAELLRALYRLgrqpplalllspEDFLDAVRRLQYLKYLAPArrEQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958655280 373 KIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEM 409
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
533-773 |
3.56e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 533 EDERLRTEDELSKYREIINRQKAEIQNVWDKVkaaQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESEL 612
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAEL---EELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 613 L--LFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLEsrllkeeelrkeEVQSLQAELSAVQTEA 690
Cdd:COG3883 92 AraLYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKA------------ELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 691 RALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTENGNYDKDVSSMGSRSSSSGSLNARSSAEDRSPENTSS 770
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
...
gi 1958655280 771 SVA 773
Cdd:COG3883 240 AAA 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
348-592 |
4.41e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 4.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 348 DLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGE--TTRLARETEKLKEEM------NSHIIKVKWA 419
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREIAELEAELerldasSDDLAALEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 420 QNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNE-LDAKLRVTKGE-----LEKQMQE 493
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAlLEERFAAALGDavereLRENLEE 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 494 KSDQL-EMHHAKIKELEDLKRTFK--------------EGMDELRTLRTKtkcLEDERL-RTEDELSKYreiinRQKAEI 557
Cdd:COG4913 774 RIDALrARLNRAEEELERAMRAFNrewpaetadldadlESLPEYLALLDR---LEEDGLpEYEERFKEL-----LNENSI 845
|
250 260 270
....*....|....*....|....*....|....*
gi 1958655280 558 QNVwdkvkaaQQLQEQLYsgkQEIEHLKEEMESLN 592
Cdd:COG4913 846 EFV-------ADLLSKLR---RAIREIKERIDPLN 870
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
252-832 |
6.13e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 6.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 252 SEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQlvaqdvTAKNAIQQIHKEMAQRMDQANKKCDEARQE 331
Cdd:PTZ00121 1075 SYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE------EAKKKAEDARKAEEARKAEDARKAEEARKA 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 332 KEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRlqQLYESKEGETTRLARETEKLKEEmnS 411
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR--KAEAARKAEEERKAEEARKAEDA--K 1224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 412 HIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQncqdmiKTYQESEEIKSNELDAKLRVTKGELEKQM 491
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ------AAIKAEEARKADELKKAEEKKKADEAKKA 1298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 492 QE--KSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTkcledERLRTEDELSKYREiiNRQKAEIQNVWDKVKAAQQ 569
Cdd:PTZ00121 1299 EEkkKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA-----EEAKKAAEAAKAEA--EAAADEAEAAEEKAEAAEK 1371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 570 LQEQlysGKQEIEHLKEEMESLNSlINDLQKDIEGSRKRESELllftekltSKNAQLQSEASSLQAQVDSLSCSEsQLQS 649
Cdd:PTZ00121 1372 KKEE---AKKKADAAKKKAEEKKK-ADEAKKKAEEDKKKADEL--------KKAAAAKKKADEAKKKAEEKKKAD-EAKK 1438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 650 QCEHMKQtngdleSRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKL 729
Cdd:PTZ00121 1439 KAEEAKK------ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 730 DQTENGNYDKDVSSMGSRSSSSGSLNARSSAEDRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMEDH 809
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
570 580
....*....|....*....|...
gi 1958655280 810 IKQLVEEIRKKTKIIQSYVLREE 832
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKA 1615
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-732 |
6.66e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 6.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAI 307
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 308 QQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQL 387
Cdd:COG1196 400 AQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 388 YESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQE 467
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 468 SEEIKSNELDAKL-RVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKY 546
Cdd:COG1196 559 AAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 547 REIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLnslindLQKDIEGSRKRESELLLFTEKLTSKNAQL 626
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE------LAERLAEEELELEEALLAEEEEERELAEA 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 627 QSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALST----------Q 696
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnllaieeyeE 792
|
490 500 510
....*....|....*....|....*....|....*....
gi 1958655280 697 VEELKDELVTQRrkhasnvKDLS---KQLQQARRKLDQT 732
Cdd:COG1196 793 LEERYDFLSEQR-------EDLEearETLEEAIEEIDRE 824
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
285-629 |
8.13e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 8.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 285 LNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQrmdqANKKCDEARQEKEAMVMKY---------VRGEKEALDLRKEKET 355
Cdd:pfam12128 598 SEEELRERLDKAEEALQSAREKQAAAEEQLVQ----ANGELEKASREETFARTALknarldlrrLFDEKQSEKDKKNKAL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 356 LERK------LRDASKELEKNTNKIKQLSQEKGR------------LQQLYESKEGETTRLARETEKLKEEMNSHIIKV- 416
Cdd:pfam12128 674 AERKdsanerLNSLEAQLKQLDKKHQAWLEEQKEqkreartekqayWQVVEGALDAQLALLKAAIAARRSGAKAELKALe 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 417 KWAQNKLKAeVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQeksd 496
Cdd:pfam12128 754 TWYKRDLAS-LGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQ---- 828
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 497 qlemhhakikeleDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIInRQKAEIQNVWDKVKAAQQLQEQLYS 576
Cdd:pfam12128 829 -------------QLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM-SKLATLKEDANSEQAQGSIGERLAQ 894
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958655280 577 GKQEIEHLKEEMESLNSLINDLQKDIegSRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:pfam12128 895 LEDLKLKRDYLSESVKKYVEHFKNVI--ADHSGSGLAETWESLREEDHYQNDK 945
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
238-722 |
9.94e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 9.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 238 KENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEElnkevkaskdqlvaqdvtaknaiqqiHKEMAQR 317
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEE--------------------------HEERREE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 318 MDQANKKCDEARQEKEAMvmkyvrgekealdlRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRlqqlyESKEGETTR 397
Cdd:PRK02224 253 LETLEAEIEDLRETIAET--------------EREREELAEEVRDLRERLEELEEERDDLLAEAGL-----DDADAEAVE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 398 LARET-EKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNEL 476
Cdd:PRK02224 314 ARREElEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 477 D------AKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLE-------DERLRTEDEL 543
Cdd:PRK02224 394 EelrerfGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEcgqpvegSPHVETIEED 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 544 SKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRkreselllftEKLTSKN 623
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR----------ERAEELR 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 624 AQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLEsrLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELkDE 703
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA--ELKERIESLERIRTLLAAIADAEDEIERLREKREAL-AE 620
|
490
....*....|....*....
gi 1958655280 704 LVTQRRKHASNVKDLSKQL 722
Cdd:PRK02224 621 LNDERRERLAEKRERKREL 639
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
253-607 |
1.17e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 253 EKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQ----LVAQDVTAkNAIQQIHKEMAQRMDQANKKCDEA 328
Cdd:PRK01156 350 DLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFiseiLKIQEIDP-DAIKKELNEINVKLQDISSKVSSL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 329 RQEKEAMVMKYVR---------------------GEKEALDLRK----EKETLERKLRDASKELEKNTNKIKQLSQEKGR 383
Cdd:PRK01156 429 NQRIRALRENLDElsrnmemlngqsvcpvcgttlGEEKSNHIINhyneKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 384 LqqlyeskEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEE----AEQIRQNCq 459
Cdd:PRK01156 509 L-------ESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTswlnALAVISLI- 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 460 DMIKTYQESEEIKS---------NELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRtfkegmdELRTLRTKTK 530
Cdd:PRK01156 581 DIETNRSRSNEIKKqlndlesrlQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKI-------LIEKLRGKID 653
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655280 531 CLEdERLRTEDELSKYREIINRQKAEIQNVWDKV-KAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:PRK01156 654 NYK-KQIAEIDSIIPDLKEITSRINDIEDNLKKSrKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
228-725 |
1.94e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKkrtETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAI 307
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELR---EAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLD 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 308 QQIHKEMAQrmdqANKKCDEARQEKEAMVMKYVRGEKEALDLrkekETLERKLRDASKELEKNTNKIKQLSQE-KGRLQQ 386
Cdd:pfam15921 377 DQLQKLLAD----LHKREKELSLEKEQNKRLWDRDTGNSITI----DHLRRELDDRNMEVQRLEALLKAMKSEcQGQMER 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 387 LYESKEGETTRLARETEklkeeMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQ 466
Cdd:pfam15921 449 QMAAIQGKNESLEKVSS-----LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 467 ESEEIKSNELdaKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDEL-----RT---LRTKTKCLEDERLR 538
Cdd:pfam15921 524 SRVDLKLQEL--QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgqhgRTagaMQVEKAQLEKEIND 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 539 TEDELSKYREIINRQKAEIQNV--------WDKVKAAQQLQEQLYSG---KQEIEHLKEEMESLNSLINDLQKDIE---- 603
Cdd:pfam15921 602 RRLELQEFKILKDKKDAKIRELearvsdleLEKVKLVNAGSERLRAVkdiKQERDQLLNEVKTSRNELNSLSEDYEvlkr 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 604 GSRKRESELLLFTEKLTSKNAQLQSE---------------------ASSLQAQVDSLSCSESQLQSQCEHMKQ--TNGD 660
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSEleqtrntlksmegsdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEamTNAN 761
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655280 661 LESRLLKEEElrkeevQSLQAELSAVQTEARALSTQVEELKdelvTQRRKHASNVKDLSKQLQQA 725
Cdd:pfam15921 762 KEKHFLKEEK------NKLSQELSTVATEKNKMAGELEVLR----SQERRLKEKVANMEVALDKA 816
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
255-454 |
2.29e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 255 DNLREELKKRTETEKLHMNT-IKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQrMDQANKKCDEARQEKE 333
Cdd:TIGR02169 275 EELNKKIKDLGEEEQLRVKEkIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE-IEELEREIEEERKRRD 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 334 AMVMKYVRGEKEALDLRKEKETLE-------RKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:TIGR02169 354 KLTEEYAELKEELEDLRAELEEVDkefaetrDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958655280 407 EEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQI 454
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
219-656 |
2.60e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 219 EKCVHSRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRteteklhMNTIKQLELRIEELNKEVKASKdqlva 298
Cdd:TIGR00606 208 ELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR-------LKEIEHNLSKIMKLDNEIKALK----- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 299 qdvTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRG-EKEALDLRKEKETLERKLRDASKELEKNTNKIKQL 377
Cdd:TIGR00606 276 ---SRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREkERELVDCQRELEKLNKERRLLNQEKTELLVEQGRL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 378 SQEKGRLQQLYESKEGETTRLARETE--KLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIR 455
Cdd:TIGR00606 353 QLQADRHQEHIRARDSLIQSLATRLEldGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIR 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 456 QNCQDMIKTYQESEEIKSNELDaKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDElrTLRTKTKCLEDE 535
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQE-ELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE--TLKKEVKSLQNE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 536 RL---RTEDELSKYREIINRQKAEIQNVW----DKVKAAQQLQEQLYSGKQEIEHLKEEM---ESLNSLINDLQKDIEGS 605
Cdd:TIGR00606 510 KAdldRKLRKLDQEMEQLNHHTTTRTQMEmltkDKMDKDEQIRKIKSRHSDELTSLLGYFpnkKQLEDWLHSKSKEINQT 589
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958655280 606 RKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLS------CSESQLQSQCEHMKQ 656
Cdd:TIGR00606 590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvCGSQDEESDLERLKE 646
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
532-734 |
4.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 532 LEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQ----LQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaaLARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 608 RESELLlftekltsKNAQLQSEASSLQAQVDSlsCSESQLQSQCEHMKQTNGDLEsrllkeeeLRKEEVQSLQAELSAVQ 687
Cdd:COG4942 105 ELAELL--------RALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARR--------EQAEELRADLAELAALR 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958655280 688 TEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA 213
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
363-523 |
4.82e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 47.13 E-value: 4.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 363 ASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEvdSHKETKDKLKEttt 442
Cdd:PRK00409 507 AKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE--AEKEAQQAIKE--- 581
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 443 kltqAKEEAEQIRQNCQDMIKtyQESEEIKSNELDAKLRvtkgELEKQMQEKSdqlemhhAKIKELEDLKRTFKEGmDEL 522
Cdd:PRK00409 582 ----AKKEADEIIKELRQLQK--GGYASVKAHELIEARK----RLNKANEKKE-------KKKKKQKEKQEELKVG-DEV 643
|
.
gi 1958655280 523 R 523
Cdd:PRK00409 644 K 644
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
162-732 |
5.53e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 162 SLYDTDCTRKLISKIKTVSASDDLLGEIESELLSAELAEEHQVPNG--VNKGEHALALFEKCVHSRYLQQELTIQQLIKE 239
Cdd:pfam12128 170 ALCDSESPLRHIDKIAKAMHSKEGKFRDVKSMIVAILEDDGVVPPKsrLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 240 NKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMaQRMD 319
Cdd:pfam12128 250 FNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSEL-EALE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 320 QANKKCDEARQEKEAmvmkyvrGEKEALDLrkeketLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESkegettRLA 399
Cdd:pfam12128 329 DQHGAFLDADIETAA-------ADQEQLPS------WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKE------QNN 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 400 RETEKLKEEMnshiikvkwaqnklkaevDSHKETKDKLKETTTKLTQAkEEAEQIRQNCQDMIKTYQESEEIKSNELDAK 479
Cdd:pfam12128 390 RDIAGIKDKL------------------AKIREARDRQLAVAEDDLQA-LESELREQLEAGKLEFNEEEYRLKSRLGELK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 480 LRVTKG--ELEKQMQEKSDQLEMHHAKiKELEDLKRTFKEGMDELRTLRTKTkclederlrteDELSKYREIINRQKAEI 557
Cdd:pfam12128 451 LRLNQAtaTPELLLQLENFDERIERAR-EEQEAANAEVERLQSELRQARKRR-----------DQASEALRQASRRLEER 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 558 QNvwdkvkAAQQLQEQLYSGKQE-IEHLKEEM----ESLNSLIN-------DLQKDIEGSRKREsELLLFTEKLTSKNAQ 625
Cdd:pfam12128 519 QS------ALDELELQLFPQAGTlLHFLRKEApdweQSIGKVISpellhrtDLDPEVWDGSVGG-ELNLYGVKLDLKRID 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 626 LQSEASSLQAQVDSLSCSESQLQSQC-------EHMKQTNGDLESRLLKEEELRKEEVQS---LQAELSAVQTEARALST 695
Cdd:pfam12128 592 VPEWAASEEELRERLDKAEEALQSARekqaaaeEQLVQANGELEKASREETFARTALKNArldLRRLFDEKQSEKDKKNK 671
|
570 580 590
....*....|....*....|....*....|....*..
gi 1958655280 696 QVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQT 732
Cdd:pfam12128 672 ALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQ 708
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
282-557 |
6.28e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.84 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 282 IEELNKEVKASKDQLVAQDVT-AKNAIQQIHKEMaqrmdQANKKCDEARQEkeamvMKYVRGEKEALDLRKEKETLERKL 360
Cdd:PRK05771 33 IEDLKEELSNERLRKLRSLLTkLSEALDKLRSYL-----PKLNPLREEKKK-----VSVKSLEELIKDVEEELEKIEKEI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 361 RDASKELEKNTNKIKQLSQEKGRLQQLY-----ESKEGETTRLARETEKLKEEmnshiikvKWAQNKLKAEVDSHKETKD 435
Cdd:PRK05771 103 KELEEEISELENEIKELEQEIERLEPWGnfdldLSLLLGFKYVSVFVGTVPED--------KLEELKLESDVENVEYIST 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 436 KLKETTTKLTQAKEEAEQIrqncqdmiktyqeSEEIKSNELDAKLRVTKGELEKQMQEKSDQLEmhhAKIKELEDLKrtf 515
Cdd:PRK05771 175 DKGYVYVVVVVLKELSDEV-------------EEELKKLGFERLELEEEGTPSELIREIKEELE---EIEKERESLL--- 235
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1958655280 516 kegmDELRTLRTKtkcLEDERLRTEDELSkyreiINRQKAEI 557
Cdd:PRK05771 236 ----EELKELAKK---YLEELLALYEYLE-----IELERAEA 265
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
343-587 |
7.15e-05 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.96 E-value: 7.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 343 EKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK---------EEMNSHI 413
Cdd:pfam15905 79 EKEIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVNELLKakfsedgtqKKMSSLS 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 414 IKVKWAQNKL----KAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQE--SEEIKSNELDAKLRVTKGEL 487
Cdd:pfam15905 159 MELMKLRNKLeakmKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEekSETEKLLEYITELSCVSEQV 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 488 EKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRT----LRTKTKCLEDErlrTEDELSKYREIINRQKAEIQNvwdk 563
Cdd:pfam15905 239 EKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKqikdLNEKCKLLESE---KEELLREYEEKEQTLNAELEE---- 311
|
250 260
....*....|....*....|....
gi 1958655280 564 vkaaqqLQEQLYSGKQEIEHLKEE 587
Cdd:pfam15905 312 ------LKEKLTLEEQEHQKLQQK 329
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
255-613 |
7.98e-05 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 46.39 E-value: 7.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 255 DNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLvaqdvtaKNAIQQIHKemaqRMDQANKKCDEARQEKEA 334
Cdd:pfam06160 103 KQILEELDELLESEEKNREEVEELKDKYRELRKTLLANRFSY-------GPAIDELEK----QLAEIEEEFSQFEELTES 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 335 MvmKYVRGEKEALDLRKEKETLERK-------LRDASKELEKNTNKIKQLSQE-------------KGRLQQLYESKEGE 394
Cdd:pfam06160 172 G--DYLEAREVLEKLEEETDALEELmedipplYEELKTELPDQLEELKEGYREmeeegyalehlnvDKEIQQLEEQLEEN 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 395 TTRLAR----ETEKLKEEMNSHIIKVkwaQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTY--QES 468
Cdd:pfam06160 250 LALLENleldEAEEALEEIEERIDQL---YDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYtlNEN 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 469 EEIKSNELDAKLRvtkgELEKQMQEKSDQLEMHHAK----IKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELS 544
Cdd:pfam06160 327 ELERVRGLEKQLE----ELEKRYDEIVERLEEKEVAyselQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLD 402
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655280 545 KYREIINRQKAEIQNVwDKVKAAQQLQEQLYSGKQEIEHLKEE-------MESLNSLINDLQKDIEGSRKRESELL 613
Cdd:pfam06160 403 EFKLELREIKRLVEKS-NLPGLPESYLDYFFDVSDEIEDLADElnevplnMDEVNRLLDEAQDDVDTLYEKTEELI 477
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-704 |
8.41e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 8.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 224 SRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTET--EKLHMNTIKQLELRIEELNKE-VKASKDQLVAQD 300
Cdd:PRK02224 244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERleELEEERDDLLAEAGLDDADAEaVEARREELEDRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 301 VTAKNAIQqihkEMAQRMDQANKKCDEARQEKEAMvmkyvrgEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQE 380
Cdd:PRK02224 324 EELRDRLE----ECRVAAQAHNEEAESLREDADDL-------EERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 381 KGRLQQLYESKEGETTRLARETEKLKEEMNshiikvkwaqnklkaevdshkETKDKLKETTTKLTQAK---EEAEQIRQ- 456
Cdd:PRK02224 393 IEELRERFGDAPVDLGNAEDFLEELREERD---------------------ELREREAELEATLRTARervEEAEALLEa 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 457 -NCQDMIKTYQESEEIKSNELDaklRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEgMDELRTLRTKTKCLEDE 535
Cdd:PRK02224 452 gKCPECGQPVEGSPHVETIEED---RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR-IERLEERREDLEELIAE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 536 RLRTEDELSKYREIINRQKAEIQ-NVWDKVKAAQQLQEQLYSGKQEI-------EHLKEEMESLN------SLINDLQKD 601
Cdd:PRK02224 528 RRETIEEKRERAEELRERAAELEaEAEEKREAAAEAEEEAEEAREEVaelnsklAELKERIESLErirtllAAIADAEDE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 602 IEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQ--CEHMKQTNGDLESRLLKEEelrkeevqSL 679
Cdd:PRK02224 608 IERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKEraEEYLEQVEEKLDELREERD--------DL 679
|
490 500
....*....|....*....|....*
gi 1958655280 680 QAELSAVQTEARALstqvEELKDEL 704
Cdd:PRK02224 680 QAEIGAVENELEEL----EELRERR 700
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
466-713 |
1.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 466 QESEEIKSNELDAKLRVTKGELEKQMQEKSDQLemhhakiKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSK 545
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALL-------KQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 546 YREIINRQKAEIQNVwdkVKAAQQLQEQ----LYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKReselllfTEKLTS 621
Cdd:COG4942 95 LRAELEAQKEELAEL---LRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAD-------LAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 622 KNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLlkeeelrkeevQSLQAELSAVQTEARALSTQVEELK 701
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL-----------AELAAELAELQQEAEELEALIARLE 233
|
250
....*....|..
gi 1958655280 702 DELVTQRRKHAS 713
Cdd:COG4942 234 AEAAAAAERTPA 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
349-536 |
1.32e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 349 LRKEKETLE----RKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLArETEKLKEEMNSHIIKVKWAQNKLK 424
Cdd:COG4717 51 LEKEADELFkpqgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 425 AEVDShKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKsNELDAKLRVTKGELEKQMQEKSDQLEMHHAK 504
Cdd:COG4717 130 LYQEL-EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQ-EELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958655280 505 IK----ELEDLKRTFKEGMDELRTLRTKTKCLEDER 536
Cdd:COG4717 208 LAeleeELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
227-738 |
1.84e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 227 LQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVT---- 302
Cdd:TIGR00618 228 LKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTqieq 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 303 -AKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKN-TNKIKQLSQE 380
Cdd:TIGR00618 308 qAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTlTQHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 381 KGRLQQLYESKEGETTRLARETEK---LKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQN 457
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATidtRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 458 CQDMIKTYQESEEIKSNE-----LDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKcl 532
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQEtrkkaVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE-- 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 533 ederlRTEDELSKYREIINRQKAEIqnvwdkvkaaQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEG-SRKRESE 611
Cdd:TIGR00618 546 -----DVYHQLTSERKQRASLKEQM----------QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKlSEAEDML 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 612 LLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEAR 691
Cdd:TIGR00618 611 ACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKE 690
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1958655280 692 ALSTQVEEL--KDELVTQRRKHASNVKDLSKQLQQARRKLDQTENGNYD 738
Cdd:TIGR00618 691 QLTYWKEMLaqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARED 739
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
256-611 |
1.98e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 256 NLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQlvAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAM 335
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ--AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 336 VMKYVRGEKEALDLRKEKETlERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIK 415
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKE-EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 416 VKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNcqdmiktyQESEEIKSNELDAKLRVTKGELEKQMQEKS 495
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL--------QEKLEQLEEELLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 496 DQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKtkclEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLY 575
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDLLKEEKKE----ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
330 340 350
....*....|....*....|....*....|....*.
gi 1958655280 576 SGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESE 611
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
545-734 |
2.11e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 545 KYREIinRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNA 624
Cdd:COG1196 214 RYREL--KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 625 QLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRkeevQSLQAELSAVQTEARALSTQVEELKDEL 704
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190
....*....|....*....|....*....|
gi 1958655280 705 VTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAE 397
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
275-508 |
2.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 275 IKQLELRIEELNKEVKASKDQLvAQDVTAKNAIQQI--HKEMAQRMDQANKKCDEARQEKEAMV--MKYVRGEKEALD-L 349
Cdd:COG4913 619 LAELEEELAEAEERLEALEAEL-DALQERREALQRLaeYSWDEIDVASAEREIAELEAELERLDasSDDLAALEEQLEeL 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 350 RKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETeklkeemnshiikvkwAQNKLKAEVDS 429
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL----------------LEERFAAALGD 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 430 HKEtKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRvTKGELEKQMQE-KSDQLEMHHAKIKEL 508
Cdd:COG4913 762 AVE-RELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLE-SLPEYLALLDRlEEDGLPEYEERFKEL 839
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
339-543 |
2.55e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 339 YVRGEKEALDLRKEKETLERkLRDASKELEKNTNKIKQLSQEKGRL-----QQLYESKEGETTRLARETEKLKEEMNSHI 413
Cdd:COG4913 237 LERAHEALEDAREQIELLEP-IRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 414 IKVKWAQNK---LKAEVDSHK-ETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEK 489
Cdd:COG4913 316 ARLDALREEldeLEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958655280 490 QMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDEL 543
Cdd:COG4913 396 LEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
256-408 |
2.67e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 256 NLREELKKRTETEKLHMNTIKQLELRieELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAM 335
Cdd:PRK12704 35 EAEEEAKRILEEAKKEAEAIKKEALL--EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655280 336 VMKYVRGEKEALDLRKEKETLERKLRDASKELEkntnKIKQLSQEKGR---LQQLYESKEGETTRLARETEKLKEE 408
Cdd:PRK12704 113 EKKEKELEQKQQELEKKEEELEELIEEQLQELE----RISGLTAEEAKeilLEKVEEEARHEAAVLIKEIEEEAKE 184
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
435-610 |
2.69e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 435 DKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRT 514
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 515 FKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAeiQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLNSL 594
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE--EELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170
....*....|....*.
gi 1958655280 595 INDLQKDIEGSRKRES 610
Cdd:COG4717 229 LEQLENELEAAALEER 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
504-729 |
2.78e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 504 KIKELEDLKRTfKEGMDELRT----LRTKTKCLEDERLRTEdelsKYREIinRQKAEIQNVWDKVKAAQQLQEQLYSGKQ 579
Cdd:TIGR02169 172 KEKALEELEEV-EENIERLDLiideKRQQLERLRREREKAE----RYQAL--LKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 580 EIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTS-KNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTN 658
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 659 GDLESRLLKEEELR-----------------KEEVQSLQAELSAVQTEARALSTQVEELKDELVtQRRKHASNVKDLSKQ 721
Cdd:TIGR02169 325 AKLEAEIDKLLAEIeelereieeerkrrdklTEEYAELKEELEDLRAELEEVDKEFAETRDELK-DYREKLEKLKREINE 403
|
....*...
gi 1958655280 722 LQQARRKL 729
Cdd:TIGR02169 404 LKRELDRL 411
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
312-830 |
2.83e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 312 KEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESK 391
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 392 EGETTRLARETEKLKEEMNSHII----KVKWAQNKLK-AEVDSHKETKDKLKETTTKLTQAKEEAEQIRqncqDMIKTYQ 466
Cdd:pfam05483 189 NNNIEKMILAFEELRVQAENARLemhfKLKEDHEKIQhLEEEYKKEINDKEKQVSLLLIQITEKENKMK----DLTFLLE 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 467 ESEEiKSNELDAKLRVTKGELeKQMQEKSDQLemhhakIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKY 546
Cdd:pfam05483 265 ESRD-KANQLEEKTKLQDENL-KELIEKKDHL------TKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQ 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 547 REIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEieHLKEEMESLNSLINDLQKdiegsrkRESELLLFTEKLTSKNAQL 626
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQ--RLEKNEDQLKIITMELQK-------KSSELEEMTKFKNNKEVEL 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 627 QsEASSLQAQVDSLSCSESQLQSQCEHMKQTngdlESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVT 706
Cdd:pfam05483 408 E-ELKKILAEDEKLLDEKKQFEKIAEELKGK----EQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 707 QRRKHA----------------------------SNVKDLSKQLQQARRKLDQTENGNYDKDVSSMGSRSSSSGSLNARS 758
Cdd:pfam05483 483 EKLKNIeltahcdklllenkeltqeasdmtlelkKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGD 562
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655280 759 SAE---DRSPENTSSSVAVDNFPEVDKAMLIDRIVRLQKAHARKNEKIEFMEDHIKQLVEEIRKKTKIIQSYVLR 830
Cdd:pfam05483 563 EVKcklDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIK 637
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
228-733 |
2.93e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQdvtaknAI 307
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE------QA 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 308 QQIHKEMAQRMDQANKKCDEARQ--EKEAMVMKYVRGEKEALDLrKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQ 385
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQelQQRYAELCAAAITCTAQCE-KLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKK 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 386 QLYESKEGETTRLARETEKLKEEMNSHII----------KVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIR 455
Cdd:TIGR00618 490 AVVLARLLELQEEPCPLCGSCIHPNPARQdidnpgpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 456 QNCQDMIKTYQESEEIKSNELDAKLRVTKgELEKQMQEKSDQLEMHHAKIKELE------DLKRTFKEGMDELRTLRTkT 529
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALLRKLQpeqdlqDVRLHLQQCSQELALKLT-A 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 530 KCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLnslindLQKDIEGSRKRE 609
Cdd:TIGR00618 648 LHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL------ETHIEEYDREFN 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 610 selllftekltsknaQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTngdlesrllKEEELRKEEVQSLQAELSAVQTe 689
Cdd:TIGR00618 722 ---------------EIENASSSLGSDLAAREDALNQSLKELMHQART---------VLKARTEAHFNNNEEVTAALQT- 776
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1958655280 690 aralSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:TIGR00618 777 ----GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDE 816
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
403-731 |
3.95e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 403 EKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEiksnELDAKLRV 482
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQE----DLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 483 TKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSK--YREIINRQKAEIQNV 560
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmhFRSLGSAISKILREL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 561 WDKVkaaQQLQEQLYSGKQEIEHLKEEMES-LNSLINDLQKDIEG-SRKRESELLLFTEKLTSKNAQLQSEASSLQAQVD 638
Cdd:pfam15921 230 DTEI---SYLKGRIFPVEDQLEALKSESQNkIELLLQQHQDRIEQlISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 639 SLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQ-------AELSAVQTEARALSTQVEELKDELVTQRRKH 711
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanSELTEARTERDQFSQESGNLDDQLQKLLADL 386
|
330 340
....*....|....*....|
gi 1958655280 712 ASNVKDLSKQLQQARRKLDQ 731
Cdd:pfam15921 387 HKREKELSLEKEQNKRLWDR 406
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
506-657 |
4.64e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 506 KELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQ------ 579
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealqk 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958655280 580 EIEHLKEEMESLNSLINDLQKDIEGSRKRESELllfTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQT 657
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAEL---EAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
261-734 |
4.65e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 261 LKKRTETEKLHMNTIKQLELRIEELNKEVKASK----DQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEAMV 336
Cdd:TIGR01612 1228 LEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPeienEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKS 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 337 MKYVRGEKEALDLRKEKETLERKLRDASK---ELEKNTNKIKQLSQekgrLQQLYESKE--GETTRLARETEKLKEEMNS 411
Cdd:TIGR01612 1308 LKIIEDFSEESDINDIKKELQKNLLDAQKhnsDINLYLNEIANIYN----ILKLNKIKKiiDEVKEYTKEIEENNKNIKD 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 412 HIIKVKWAQNKLKAEVdSHKETKDKLkETTTKLTQAKEEAEQIRQncqdmIKTYQESEEIKSNEL--DAKLRVTKGELEK 489
Cdd:TIGR01612 1384 ELDKSEKLIKKIKDDI-NLEECKSKI-ESTLDDKDIDECIKKIKE-----LKNHILSEESNIDTYfkNADENNENVLLLF 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 490 QMQEKSDQLEMHHAKIKElEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAqQ 569
Cdd:TIGR01612 1457 KNIEMADNKSQHILKIKK-DNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSAL-A 1534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 570 LQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLscsESQLQS 649
Cdd:TIGR01612 1535 IKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENF---ENKFLK 1611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 650 QCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDElvtqrrkhASNVKDLSKQLQQARRKL 729
Cdd:TIGR01612 1612 ISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQ--------KKNIEDKKKELDELDSEI 1683
|
....*
gi 1958655280 730 DQTEN 734
Cdd:TIGR01612 1684 EKIEI 1688
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
327-634 |
5.08e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 327 EARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLK 406
Cdd:pfam02463 202 LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 407 EEMNSHiikvkwaQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRvTKGE 486
Cdd:pfam02463 282 KLQEEE-------LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEI-KREA 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 487 LEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKA 566
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958655280 567 AQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQ-KDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQ 634
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELElKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
188-437 |
5.16e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 188 EIESELLSAELAEEHQVPNGVNKGEHALALFEKCVHSRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTET 267
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 268 EKLHMNTIKQLELRIEELNKEVKASKDQLVaqdvtaknAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEAL 347
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIE--------SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 348 DLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGettRLARETEKLKEEMNSHIIKVKWAQNKLKAEV 427
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEEARRRL 974
|
250
....*....|
gi 1958655280 428 DSHKETKDKL 437
Cdd:TIGR02168 975 KRLENKIKEL 984
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
263-469 |
5.40e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 263 KRTETEKlhmnTIKQLELRIEELNKEVKASKDQL---------VAQDVTAKNAIQQIhKEMAQRMDQANKKCDEARQEKE 333
Cdd:COG3206 169 RREEARK----ALEFLEEQLPELRKELEEAEAALeefrqknglVDLSEEAKLLLQQL-SELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 334 AM---------VMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQlyeskegettRLARETEK 404
Cdd:COG3206 244 ALraqlgsgpdALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA----------QLQQEAQR 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655280 405 LKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESE 469
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
239-611 |
5.65e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 239 ENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHK-EMAQR 317
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaEEAKK 1669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 318 MDQANKKCDEARQE------KEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEkgrlqqlyesk 391
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAeedekkAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE----------- 1738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 392 EGETTRLARETEKLKEEMNshiikvKWAQnkLKAEVDSHKETKDKLKETTTKlTQAKEEAEQIRQNCQDMIK-TYQESEE 470
Cdd:PTZ00121 1739 AEEDKKKAEEAKKDEEEKK------KIAH--LKKEEEKKAEEIRKEKEAVIE-EELDEEDEKRRMEVDKKIKdIFDNFAN 1809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 471 IKSNELDAKLRVtkgelekqmqekSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREII 550
Cdd:PTZ00121 1810 IIEGGKEGNLVI------------NDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLK 1877
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958655280 551 NRQKAEIQNVwdkvkaaqQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESE 611
Cdd:PTZ00121 1878 EDDEEEIEEA--------DEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAE 1930
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
349-733 |
5.96e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 349 LRKEKETLERKLRDASKELEKNTnkikqLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVkwaqNKLKAEVD 428
Cdd:PRK01156 99 IKKDGSIIAEGFDDTTKYIEKNI-----LGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEI----NSLERNYD 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 429 SHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKlrvtkGELEKQMQEKSDQLEMHHAKIKEL 508
Cdd:PRK01156 170 KLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEI-----ERLSIEYNNAMDDYNNLKSALNEL 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 509 EDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREIINrqkaeiqnvwDKVKAAQQLQEQLYSGKQEIEHLKEEM 588
Cdd:PRK01156 245 SSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIN----------DPVYKNRNYINDYFKYKNDIENKKQIL 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 589 ESLNSLINDLQKDIegsrKRESELllftEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLEsrllke 668
Cdd:PRK01156 315 SNIDAEINKYHAII----KKLSVL----QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE------ 380
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655280 669 eeLRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:PRK01156 381 --EYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELS 443
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
374-619 |
6.43e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.98 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 374 IKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKwaqnKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQ 453
Cdd:COG1340 10 LEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVK----ELREEAQELREKRDELNEKVKELKEERDELNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 454 IRQNCQDMIKTYQES--EEIKSNELDAKLRVTKGELEKQMQ------EKSDQLEMHHAKIKELEDLKRTFKEGMDELRTL 525
Cdd:COG1340 86 KLNELREELDELRKElaELNKAGGSIDKLRKEIERLEWRQQtevlspEEEKELVEKIKELEKELEKAKKALEKNEKLKEL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 526 RTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVwdkVKAAQQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGS 605
Cdd:COG1340 166 RAELKELRKEAEEIHKKIKELAEEAQELHEEMIEL---YKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELREL 242
|
250
....*....|....
gi 1958655280 606 RKRESELLLFTEKL 619
Cdd:COG1340 243 RKELKKLRKKQRAL 256
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
381-734 |
9.02e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.02 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 381 KGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQD 460
Cdd:COG5185 165 FGKLTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 461 MIKTYQESEEIKSN-ELDAKLRVTK----GELEKQMQEKS----DQLEMHHAKIKELE---DLKRTFKEGMDELRTLRTK 528
Cdd:COG5185 245 LEDLAQTSDKLEKLvEQNTDLRLEKlgenAESSKRLNENAnnliKQFENTKEKIAEYTksiDIKKATESLEEQLAAAEAE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 529 TKcLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAA----------QQLQEQLYSGKQEIEHLKEEMEslNSLINDL 598
Cdd:COG5185 325 QE-LEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEienivgevelSKSSEELDSFKDTIESTKESLD--EIPQNQR 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 599 QKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQsqcehmkqtngdlESRLLKEEELRKEEVQS 678
Cdd:COG5185 402 GYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELN-------------KVMREADEESQSRLEEA 468
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655280 679 LQAELSAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQARRKLDQTEN 734
Cdd:COG5185 469 YDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAE 524
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
275-428 |
9.93e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 9.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 275 IKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQI-HKEMAQRMDQANKKCDEARQEKeamvmkyVRGEKEALDLRKEK 353
Cdd:COG1579 26 LKELPAELAELEDELAALEARLEAAKTELEDLEKEIkRLELEIEEVEARIKKYEEQLGN-------VRNNKEYEALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958655280 354 ETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVD 428
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
408-602 |
1.05e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 408 EMNSHIIKVKWAQNKLKAEVDSHKE--------TKDKLKETTTKLTQAKEEAEQIRQ---NCQDMIKTYQESEEIKSNEL 476
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKnieeqrkkNGENIARKQNKYDELVEEAKTIKAeieELTDELLNLVMDIEDPSAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 477 dAKLRVTKGELEKQMQEKSDQLEMHH----------------AKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTE 540
Cdd:PHA02562 258 -NKLNTAAAKIKSKIEQFQKVIKMYEkggvcptctqqisegpDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQS 336
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958655280 541 DELSKYREIINRQKAEIQNVWDKVKAAQ----QLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDI 602
Cdd:PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKaaieELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
303-484 |
1.23e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 303 AKNAIQQIHKEMAQRMDQANKKCDEARQEKEamvmkyVRGEKEALDLRKEketLERKLRDASKELEKNTNKIKQLSQEKG 382
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEEAKKEAEAIKKEAL------LEAKEEIHKLRNE---FEKELRERRNELQKLEKRLLQKEENLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 383 RLQQLYESKEGETTRLARETEKLKEEMnshiikvkwaqNKLKAEVDS-HKETKDKLkETTTKLTQakEEA-EQIRQNCQD 460
Cdd:PRK12704 100 RKLELLEKREEELEKKEKELEQKQQEL-----------EKKEEELEElIEEQLQEL-ERISGLTA--EEAkEILLEKVEE 165
|
170 180
....*....|....*....|....
gi 1958655280 461 MIKtYQESEEIKSNELDAKLRVTK 484
Cdd:PRK12704 166 EAR-HEAAVLIKEIEEEAKEEADK 188
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
218-634 |
1.24e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 218 FEKCVHSRYLQQELTIQQLIKENKNHQELILNicseKDNLREELKKRTETEKLHMNTI------KQLELRIEELNKEVKA 291
Cdd:TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQN----KNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEK 650
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 292 SKDQLvAQDVTAKNAIQQIHKEMAQRMDQANKKCDEARQEKEamvmkyvrgekealDLRKEKETLERKLRDASKELEKNT 371
Cdd:TIGR00606 651 SSKQR-AMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEA--------------ELQEFISDLQSKLRLAPDKLKSTE 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 372 NKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNShiikvkwaQNKLKAEVDSHKETKDKLKETttkLTQAKEEA 451
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQK--------VNRDIQRLKNDIEEQETLLGT---IMPEEESA 784
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 452 EQIRQNCQDMIKTYQESEEI--KSNELDAKLRVTKGELEKQM--QEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRT 527
Cdd:TIGR00606 785 KVCLTDVTIMERFQMELKDVerKIAQQAAKLQGSDLDRTVQQvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 528 KTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLKEEMESLnslindLQKDIEGSRK 607
Cdd:TIGR00606 865 KTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL------ISSKETSNKK 938
|
410 420
....*....|....*....|....*..
gi 1958655280 608 RESELLLFTEKLTSKNAQLQSEASSLQ 634
Cdd:TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDIENKIQ 965
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
259-380 |
1.32e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 259 EELKKRTETEKLHmntIKQLELRIEELNKEVKASKDQLvaqdvtaknaiQQIHKEMAQRMDQ-ANKKCDEARQEKEAMVM 337
Cdd:PRK00409 526 EELERELEQKAEE---AEALLKEAEKLKEELEEKKEKL-----------QEEEDKLLEEAEKeAQQAIKEAKKEADEIIK 591
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1958655280 338 KYVRGEKEALDLRKEKETLE--RKLRDASKELEKNTNKIKQLSQE 380
Cdd:PRK00409 592 ELRQLQKGGYASVKAHELIEarKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
433-635 |
1.83e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 433 TKDKLKETTTKL----------TQAKEEAEQIR---------QNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQE 493
Cdd:PRK05771 14 LKSYKDEVLEALhelgvvhiedLKEELSNERLRklrslltklSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 494 KSDQLE-----MHHaKIKELEDLKRTFKEGMDELRTLRTKTkcLEDERLRT------------EDELSKYREIINRQKAE 556
Cdd:PRK05771 94 ELEKIEkeikeLEE-EISELENEIKELEQEIERLEPWGNFD--LDLSLLLGfkyvsvfvgtvpEDKLEELKLESDVENVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 557 IQN---------VWDKVKAAQQLQEQL-----------YSG--KQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLL 614
Cdd:PRK05771 171 YIStdkgyvyvvVVVLKELSDEVEEELkklgferleleEEGtpSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250
|
250 260
....*....|....*....|.
gi 1958655280 615 FTEKLTSkNAQLQSEASSLQA 635
Cdd:PRK05771 251 ALYEYLE-IELERAEALSKFL 270
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
343-494 |
1.85e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 343 EKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNShIIKVKWAQNk 422
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGN-VRNNKEYEA- 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958655280 423 LKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEK 494
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAER 165
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
531-726 |
1.91e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.44 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 531 CLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEIEHLK----EEMESLNSLINDLQKDIEGSR 606
Cdd:pfam00038 83 AAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKknheEEVRELQAQVSDTQVNVEMDA 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 607 KRESELllfTEKLTSKNAQLQSEASSLQAQvdslscSESQLQSQCEHMKQ---TNGDLESRLLKEEELRKEEVQSLQAEL 683
Cdd:pfam00038 163 ARKLDL---TSALAEIRAQYEEIAAKNREE------AEEWYQSKLEELQQaaaRNGDALRSAKEEITELRRTIQSLEIEL 233
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958655280 684 SAVQTEARALSTQVEELKDELVTQRRKHASNVKDLSKQLQQAR 726
Cdd:pfam00038 234 QSLKKQKASLERQLAETEERYELQLADYQELISELEAELQETR 276
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
255-922 |
2.45e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 255 DNLREELKkRTETEKLHMNTIKQLELRIEELN-KEVKASKDQLVAQDVTAKNAIQQIHKEMAQ---RMDQANKKCDEARQ 330
Cdd:TIGR02169 194 DEKRQQLE-RLRREREKAERYQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEELEKlteEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 331 EKEAMVMK--------YVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARET 402
Cdd:TIGR02169 273 LLEELNKKikdlgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 403 EKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESE------------- 469
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSeeladlnaaiagi 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 470 EIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTEDELSKYREI 549
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 550 INRQKAEIQNVW--------------------------------------------------------DKVKAAQQLQEQ 573
Cdd:TIGR02169 513 EEVLKASIQGVHgtvaqlgsvgeryataievaagnrlnnvvveddavakeaiellkrrkagratflplNKMRDERRDLSI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 574 LY----------------------------------------------------------------------------SG 577
Cdd:TIGR02169 593 LSedgvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprggilfsrSE 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 578 KQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQT 657
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 658 NGDLESRllkeeelrkeeVQSLQAELSAVQTEARALSTQVEELKDEL----VTQRRKHASNVKDLSKQLQQARRKLDQTE 733
Cdd:TIGR02169 753 IENVKSE-----------LKELEARIEELEEDLHKLEEALNDLEARLshsrIPEIQAELSKLEEEVSRIEARLREIEQKL 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 734 NG-NYDKDVSSMGSRSSSSGSLNARSSAEDRSPENTSSSVAVDNFPEVDK------AMLIDRIVRLQKAHARKNEKIEFM 806
Cdd:TIGR02169 822 NRlTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEeleaalRDLESRLGDLKKERDELEAQLREL 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 807 EDHIKQLVEEIRKKTKIIQsyVLREESGTLSSEASdfnkvHLSRRGGIMASLYTSHPADSGLTLELsLEINRKLQAV--- 883
Cdd:TIGR02169 902 ERKIEELEAQIEKKRKRLS--ELKAKLEALEEELS-----EIEDPKGEDEEIPEEELSLEDVQAEL-QRVEEEIRALepv 973
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 1958655280 884 -------LEDTLLKNITLKENLQTLGTEIERLIKHQHELEQRTKKA 922
Cdd:TIGR02169 974 nmlaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
274-530 |
2.81e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 274 TIKQLELRIEELNKEVKASKDQLvaqdvtakNAIQQIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEK 353
Cdd:COG1340 9 SLEELEEKIEELREEIEELKEKR--------DELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 354 ETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNshIIKVKWAQNKLKAEVDSHKET 433
Cdd:COG1340 81 DELNEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKE--LVEKIKELEKELEKAKKALEK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 434 KDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQE-SEEIKS--NELDaKLRVTKGELEKQMQEKSDQLEMHHAKIKELED 510
Cdd:COG1340 159 NEKLKELRAELKELRKEAEEIHKKIKELAEEAQElHEEMIElyKEAD-ELRKEADELHKEIVEAQEKADELHEEIIELQK 237
|
250 260
....*....|....*....|
gi 1958655280 511 LKRTFKEGMDELRTLRTKTK 530
Cdd:COG1340 238 ELRELRKELKKLRKKQRALK 257
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
262-590 |
3.13e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 262 KKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCDEAR------------ 329
Cdd:PLN02939 57 KQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQlsdfqledlvgm 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 330 -QEKEAMVMKYVRGEKEALD----LRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYE---------SKEGET 395
Cdd:PLN02939 137 iQNAEKNILLLNQARLQALEdlekILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEqleklrnelLIRGAT 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 396 TR-----LARETEKLKEEMNShiikVKWAQNKLKAEVDSHKETKDKL----KETTTKLTQAKEEAEQIRQNCQDMIKTYQ 466
Cdd:PLN02939 217 EGlcvhsLSKELDVLKEENML----LKDDIQFLKAELIEVAETEERVfkleKERSLLDASLRELESKFIVAQEDVSKLSP 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 467 ESEEI---KSNELDAKLRVTKGELEK------QMQEKSDQLEMHHAKIKEledlKRTFKEGMDELRTLRTKTKCLEDERL 537
Cdd:PLN02939 293 LQYDCwweKVENLQDLLDRATNQVEKaalvldQNQDLRDKVDKLEASLKE----ANVSKFSSYKVELLQQKLKLLEERLQ 368
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958655280 538 RTEDELSKYREIINRQKAEIQNVWDKVKAAqqlqeqlySGKQEIEHLKEEMES 590
Cdd:PLN02939 369 ASDHEIHSYIQLYQESIKEFQDTLSKLKEE--------SKKRSLEHPADDMPS 413
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
258-472 |
3.43e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 258 REELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAiqqihkeMAQRMdqanKKCDEARQEKEAMVM 337
Cdd:pfam15921 592 KAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA-------GSERL----RAVKDIKQERDQLLN 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 338 KYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIK-QLSQEKGRLQQL------YESKEGETTRLA----------- 399
Cdd:pfam15921 661 EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKmQLKSAQSELEQTrntlksMEGSDGHAMKVAmgmqkqitakr 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 400 ---------------------RETEKLKEEMN---SHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIR 455
Cdd:pfam15921 741 gqidalqskiqfleeamtnanKEKHFLKEEKNklsQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQF 820
|
250
....*....|....*..
gi 1958655280 456 QNCQDMIKTyQESEEIK 472
Cdd:pfam15921 821 AECQDIIQR-QEQESVR 836
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
253-662 |
4.32e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 253 EKDNLREELKK---RTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVTAKNAIQQiHKEMAQRMDQANKKCDEAR 329
Cdd:PRK01156 250 MKNRYESEIKTaesDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHAII 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 330 Q---EKEAMVMKYVRGEKEALDLRKEK---ETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETE 403
Cdd:PRK01156 329 KklsVLQKDYNDYIKKKSRYDDLNNQIlelEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIK 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 404 KLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKL-----------TQAKEEAEQIRQNCQDMIKTYQES---E 469
Cdd:PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLngqsvcpvcgtTLGEEKSNHIINHYNEKKSRLEEKireI 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 470 EIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDE--RLRTEDELSKYR 547
Cdd:PRK01156 489 EIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRykSLKLEDLDSKRT 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 548 EIIN----RQKAEIQNVWDKVKAAQQLQEQLYSGKQEIE-------------------------HLKEEMESLNSLINDL 598
Cdd:PRK01156 569 SWLNalavISLIDIETNRSRSNEIKKQLNDLESRLQEIEigfpddksyidksireieneannlnNKYNEIQENKILIEKL 648
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958655280 599 QKDIEGSRKRESELLLFTEK---LTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLE 662
Cdd:PRK01156 649 RGKIDNYKKQIAEIDSIIPDlkeITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
223-721 |
4.43e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 223 HSRYLQQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLELRIEELNKEVKASKDQLVAQDVT 302
Cdd:pfam05483 221 HEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 303 AKNAIQQ---IHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKE----ALDLRKEKETLERKLRDASKELEKNTNKIK 375
Cdd:pfam05483 301 IKMSLQRsmsTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAhsfvVTEFEATTCSLEELLRTEQQRLEKNEDQLK 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 376 QL-------SQEKGRLQQLYESKEGETTRLAR---ETEKLKEEmNSHIIKVKWAQNKLKAEVDSHKETKDK-LKETTTKL 444
Cdd:pfam05483 381 IItmelqkkSSELEEMTKFKNNKEVELEELKKilaEDEKLLDE-KKQFEKIAEELKGKEQELIFLLQAREKeIHDLEIQL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 445 TQAKEEAEQIRQNCQDMiKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSD---QLEMHHAKI---------------- 505
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDL-KTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtlELKKHQEDIinckkqeermlkqien 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 506 ---------KELEDLKRTFKEGMDELRTLRTKT----KCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQE 572
Cdd:pfam05483 539 leekemnlrDELESVREEFIQKGDEVKCKLDKSeenaRSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENK 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 573 -----------QLYSGKQEIEHLKEEMES----LNSLINDLQKDIEGSRKRESELLLFTEK---LTSKNAQLQSEAS-SL 633
Cdd:pfam05483 619 alkkkgsaenkQLNAYEIKVNKLELELASakqkFEEIIDNYQKEIEDKKISEEKLLEEVEKakaIADEAVKLQKEIDkRC 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 634 QAQVDSLSCSESQLQSQCEHMKQTNGDLESRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELKDELVTQRRKHAS 713
Cdd:pfam05483 699 QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
....*...
gi 1958655280 714 NVKDLSKQ 721
Cdd:pfam05483 779 NTAILKDK 786
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
343-727 |
5.06e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 343 EKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQL---YESKEGETTRLARETEKLKEEmnshIIKVKWA 419
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVleeHEERREELETLEAEIEDLRET----IAETERE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 420 QNKLKAEVDSHKETKDKLKETTTK--------------LTQAKEEAEQIRQNCQDMIKTYQESEEIKSNELD-------- 477
Cdd:PRK02224 274 REELAEEVRDLRERLEELEEERDDllaeaglddadaeaVEARREELEDRDEELRDRLEECRVAAQAHNEEAEslredadd 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 478 -----AKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKtkcLEDERLRTEDELSKYREIINR 552
Cdd:PRK02224 354 leeraEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN---AEDFLEELREERDELREREAE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 553 QKAEIQNVWDKVKAAQQLQEQ------------------LYSGKQEIEHLKEEMESLNSLINDLQKDIE------GSRKR 608
Cdd:PRK02224 431 LEATLRTARERVEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEEEVEEVEERLEraedlvEAEDR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 609 ESELLLFTEKLTSKNAQLQSEASSLQAQVDSLSCSESQLQSQCEHMKQTNGDLESrllkEEELRKEEVQSLQAELSAVQT 688
Cdd:PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE----EAEEAREEVAELNSKLAELKE 586
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1958655280 689 EARALST------QVEELKDELVT--QRRKHASNVKDLSKQLQQARR 727
Cdd:PRK02224 587 RIESLERirtllaAIADAEDEIERlrEKREALAELNDERRERLAEKR 633
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
255-386 |
5.19e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 255 DNLREELKKRTETeklhMNTIKQLELRIEELNKEVKASKDQLvaqdvtakNAIQQIHKEMAQRMDQANKKCDEARQEKEA 334
Cdd:COG4913 671 AELEAELERLDAS----SDDLAALEEQLEELEAELEELEEEL--------DELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1958655280 335 MVMKYVRGEKEALDLRKEKETLERKLRDASKELEkntNKIKQLSQEKGRLQQ 386
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDAVERELRENLE---ERIDALRARLNRAEE 787
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
275-375 |
5.32e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 275 IKQLELRIEELNKEvkasKDQLVA-QDVTAKNAIQQIHKEMAQRMDQANKKcdEARQEKEAMVMKYVRGEKEALDLRKEK 353
Cdd:COG0542 413 LDELERRLEQLEIE----KEALKKeQDEASFERLAELRDELAELEEELEAL--KARWEAEKELIEEIQELKEELEQRYGK 486
|
90 100
....*....|....*....|...
gi 1958655280 354 E-TLERKLRDASKELEKNTNKIK 375
Cdd:COG0542 487 IpELEKELAELEEELAELAPLLR 509
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
228-602 |
7.30e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHMNTIKQLE------LRIEELNKEVKASKDQLVAQDV 301
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltrrmQRGEQTYAQLETSEEDVYHQLT 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 302 TAKNAIQqIHKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEK-------NTNKI 374
Cdd:TIGR00618 553 SERKQRA-SLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRklqpeqdLQDVR 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 375 KQLSQEKGRLQQLYESKEGETTRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHK------------ETKDKLKETTT 442
Cdd:TIGR00618 632 LHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEkeqltywkemlaQCQTLLRELET 711
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 443 KLTQAKEEAEQIRQNCQDMIKTYQESEEIKS---NELDAKLRVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGM 519
Cdd:TIGR00618 712 HIEEYDREFNEIENASSSLGSDLAAREDALNqslKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN 791
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 520 DELRTLRTKTKCLEDE--RLRTEDELSKYREIINRQK----------------AEIQNVWDKVKAAQQLQEQLYSGKQEI 581
Cdd:TIGR00618 792 RLREEDTHLLKTLEAEigQEIPSDEDILNLQCETLVQeeeqflsrleeksatlGEITHQLLKYEECSKQLAQLTQEQAKI 871
|
410 420
....*....|....*....|.
gi 1958655280 582 EHLKEEMESLNSLINDLQKDI 602
Cdd:TIGR00618 872 IQLSDKLNGINQIKIQFDGDA 892
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
228-635 |
7.99e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 228 QQELTIQQLIKENKNHQELILNICSEKDNLREELKKRTETEKLHM--NTIKQLELRIEELNKEVkaskDQLVAQDVTAKN 305
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERL----EELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 306 AIQQIhKEMAQRMDQANKKCDEARQEKEAMVMKYVRGEKEALD-LRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRL 384
Cdd:COG4717 161 LEEEL-EELEAELAELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 385 QQLYESKEGETTRLA-------RETEKLKEEMNSHIIKVKWAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQN 457
Cdd:COG4717 240 ALEERLKEARLLLLIaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 458 CQDMIKTYQESEEIKSNELDAKLRVTKGELEKQMQEKSDQLEmhHAKIKELEDLKRTF--KEGMDELRTLRTKTKcLEDE 535
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEIAALlaEAGVEDEEELRAALE-QAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 536 RLRTEDELSKYREIINRQKAEIQNVWDKVKAAqQLQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIE--GSRKRESELL 613
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEE-ELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELL 475
|
410 420
....*....|....*....|..
gi 1958655280 614 LFTEKLTSKNAQLQSEASSLQA 635
Cdd:COG4717 476 QELEELKAELRELAEEWAALKL 497
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
491-607 |
8.19e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.23 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 491 MQEKSDQLEMHHAKIKEL-EDLKRTFKEGMDELRTLRTKTKCLEDERlrtEDELSKYREIINRQKAEIQNvwdKVKAAQQ 569
Cdd:smart00787 156 LKEDYKLLMKELELLNSIkPKLRDRKDALEEELRQLKQLEDELEDCD---PTELDRAKEKLKKLLQEIMI---KVKKLEE 229
|
90 100 110
....*....|....*....|....*....|....*...
gi 1958655280 570 LQEQLYSGKQEIEHLKEEMESLNSLINDLQKDIEGSRK 607
Cdd:smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
358-731 |
8.61e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 39.84 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 358 RKLRDASKELEKNTNKIKQLS--QEKGRLQQLyeSKEGET-TRLARETEKLKEEMNSHIIKVKWAQNKLKAEVDSHK--E 432
Cdd:pfam06160 6 KKIYKEIDELEERKNELMNLPvqEELSKVKKL--NLTGETqEKFEEWRKKWDDIVTKSLPDIEELLFEAEELNDKYRfkK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 433 TKDKLKETTTKLTQAKEEAEQIRQNCQDMIktyqESEEIKSNELDaKLRVTKGELEKQMQEKSDQ----LEMHHAKIKEL 508
Cdd:pfam06160 84 AKKALDEIEELLDDIEEDIKQILEELDELL----ESEEKNREEVE-ELKDKYRELRKTLLANRFSygpaIDELEKQLAEI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 509 EDLKRTFKEGM---------DELRTLRTKTKCLED---------ERLRTE--DELSKYREIINRQKA------------E 556
Cdd:pfam06160 159 EEEFSQFEELTesgdylearEVLEKLEEETDALEElmedipplyEELKTElpDQLEELKEGYREMEEegyalehlnvdkE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 557 IQNVWDKVKAAQQLQEQLysgkqEIEHLKEEMESLNSLINDLQKDIEG-------SRKRESELLLFTEKLTSKNAQLQSE 629
Cdd:pfam06160 239 IQQLEEQLEENLALLENL-----ELDEAEEALEEIEERIDQLYDLLEKevdakkyVEKNLPEIEDYLEHAEEQNKELKEE 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 630 ASSLQaqvDSLSCSESQLQSQcehmKQTNGDLESRLLKEEELRKEEVQSLQAeLSAVQTEARALSTQVEELKDELVtqrr 709
Cdd:pfam06160 314 LERVQ---QSYTLNENELERV----RGLEKQLEELEKRYDEIVERLEEKEVA-YSELQEELEEILEQLEEIEEEQE---- 381
|
410 420
....*....|....*....|..
gi 1958655280 710 KHASNVKDLSKQLQQARRKLDQ 731
Cdd:pfam06160 382 EFKESLQSLRKDELEAREKLDE 403
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
252-541 |
8.65e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 252 SEKDNLREELKKRTETeklhmntIKQLELRIEELNKEVKASKDQLVAQDV-------TAKNAIQQIHKEMAQRMDQANKK 324
Cdd:PRK02224 419 EERDELREREAELEAT-------LRTARERVEEAEALLEAGKCPECGQPVegsphveTIEEDRERVEELEAELEDLEEEV 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 325 cdEARQEKEAMVMKYVRGEKEALDLRKEKETLERKLRDASKELEKNTNKIKQLSQEKGRLQQLYESKEGETTRLARETEK 404
Cdd:PRK02224 492 --EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 405 LKEEMNshiikvkwAQNKLKAEVDSHKETKDKLKETTTKLTQAKEEAEQIRQNCQDMIKTYQESEEI------KSNELDA 478
Cdd:PRK02224 570 AREEVA--------ELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERlaekreRKRELEA 641
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958655280 479 KL--------RVTKGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKTKCLEDERLRTED 541
Cdd:PRK02224 642 EFdearieeaREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEA 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
443-640 |
8.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 8.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 443 KLTQAKEEAEQIRQNCQDMIKTYQESEEIKsNELDAKLRVTKGELEKQMQEksDQLEMHHAKIKELEDLKRTFKEGMDEL 522
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAEL-DALQERREALQRLAEYSWDE--IDVASAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 523 RTLRTKTKCLEDERLRTEDELSKYREIINRQKAEIQNVWDKVKAAQQLQEQLYSGKQEI------EHLKEEM--ESLNSL 594
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleERFAAALgdAVEREL 767
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958655280 595 INDLQKDIEGSRKRESELL-LFTEKLTSKNAQLQSEASSLQAQVDSL 640
Cdd:COG4913 768 RENLEERIDALRARLNRAEeELERAMRAFNREWPAETADLDADLESL 814
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
473-724 |
9.82e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 39.68 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 473 SNELDAKLRVTKGELEKQMQEKS-DQLEMHHAKIKELEDLKRTFKEGMDELRtLRTKTKcLEDERLRTEDELSKYREIIN 551
Cdd:COG5022 819 IIKLQKTIKREKKLRETEEVEFSlKAEVLIQKFGRSLKAKKRFSLLKKETIY-LQSAQR-VELAERQLQELKIDVKSISS 896
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 552 RQKAEIQNVWDKVKAAQQLQEQLysgKQEIEHLKEEMESLNSLINDLQKDIEGSRKRESELLLftEKLTSKNAQLQSEAS 631
Cdd:COG5022 897 LKLVNLELESEIIELKKSLSSDL---IENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPEL--NKLHEVESKLKETSE 971
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958655280 632 SLQAQVDSLSCSESQLQSQCEHMKQTNGDLE--SRLLKEEELRKEEVQSLQAELSAVQTEARALSTQVEELK--DELVTQ 707
Cdd:COG5022 972 EYEDLLKKSTILVREGNKANSELKNFKKELAelSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSilKPLQKL 1051
|
250
....*....|....*..
gi 1958655280 708 RRKHASNVKDLSKQLQQ 724
Cdd:COG5022 1052 KGLLLLENNQLQARYKA 1068
|
|
| |
