NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958641162|ref|XP_038956649|]
View 

testis-specific Y-encoded protein 1 isoform X2 [Rattus norvegicus]

Protein Classification

NAP domain-containing protein( domain architecture ID 1637)

NAP domain-containing protein similar to Homo sapiens protein testis-specific Y-encoded protein and nucleosome assembly protein 1-like

CATH:  3.30.1120.90
Gene Ontology:  GO:0042393|GO:0003682|GO:0006334
PubMed:  16936827
SCOP:  4003454

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
NAP super family cl47614
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
37-110 2.07e-07

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


The actual alignment was detected with superfamily member pfam00956:

Pssm-ID: 460010  Cd Length: 203  Bit Score: 48.32  E-value: 2.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958641162  37 MNHPQMSSIISNQDEDLLSYM--LSLEVEEYNPGLRMCrmmFFFSENPYFRNDIVTKDYQLSIIGYKE----SDSSTIEW 110
Cdd:pfam00956  40 KNLPLLSEMITERDEPALKHLkdIKIEYPLDEPGFTLE---FHFAPNPYFTNTVLTKTYYYQDEPDGPeiikAEGTEIDW 116
 
Name Accession Description Interval E-value
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
37-110 2.07e-07

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 48.32  E-value: 2.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958641162  37 MNHPQMSSIISNQDEDLLSYM--LSLEVEEYNPGLRMCrmmFFFSENPYFRNDIVTKDYQLSIIGYKE----SDSSTIEW 110
Cdd:pfam00956  40 KNLPLLSEMITERDEPALKHLkdIKIEYPLDEPGFTLE---FHFAPNPYFTNTVLTKTYYYQDEPDGPeiikAEGTEIDW 116
PTZ00007 PTZ00007
(NAP-L) nucleosome assembly protein -L; Provisional
34-166 8.33e-06

(NAP-L) nucleosome assembly protein -L; Provisional


Pssm-ID: 240226 [Multi-domain]  Cd Length: 337  Bit Score: 44.40  E-value: 8.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958641162  34 RQMMNHPQMSSIISNQDEDLLSYMLSLEVEEYNPGLRMC-RMMFFFSENPYFRNDIVTKDYQL----------------S 96
Cdd:PTZ00007  105 TAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGfILVFTFAPNPFFSNTVLTKTYHMkvldgddepllsntvaT 184
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958641162  97 IIGYKESDSSTIEWIGQAEHGY----ANCMQDT-TRLTFFNWLCAHKFPGSNRIAEiiMDDLWPNPLYYYPKEDH 166
Cdd:PTZ00007  185 EIDWKQGKDVTKKVVTKKQRHKktkeTRTVTETvDRESFFNFFTSHEVPSDEELEK--MSKHEIAELEMIVETDY 257
 
Name Accession Description Interval E-value
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
37-110 2.07e-07

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 48.32  E-value: 2.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958641162  37 MNHPQMSSIISNQDEDLLSYM--LSLEVEEYNPGLRMCrmmFFFSENPYFRNDIVTKDYQLSIIGYKE----SDSSTIEW 110
Cdd:pfam00956  40 KNLPLLSEMITERDEPALKHLkdIKIEYPLDEPGFTLE---FHFAPNPYFTNTVLTKTYYYQDEPDGPeiikAEGTEIDW 116
PTZ00007 PTZ00007
(NAP-L) nucleosome assembly protein -L; Provisional
34-166 8.33e-06

(NAP-L) nucleosome assembly protein -L; Provisional


Pssm-ID: 240226 [Multi-domain]  Cd Length: 337  Bit Score: 44.40  E-value: 8.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958641162  34 RQMMNHPQMSSIISNQDEDLLSYMLSLEVEEYNPGLRMC-RMMFFFSENPYFRNDIVTKDYQL----------------S 96
Cdd:PTZ00007  105 TAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGfILVFTFAPNPFFSNTVLTKTYHMkvldgddepllsntvaT 184
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958641162  97 IIGYKESDSSTIEWIGQAEHGY----ANCMQDT-TRLTFFNWLCAHKFPGSNRIAEiiMDDLWPNPLYYYPKEDH 166
Cdd:PTZ00007  185 EIDWKQGKDVTKKVVTKKQRHKktkeTRTVTETvDRESFFNFFTSHEVPSDEELEK--MSKHEIAELEMIVETDY 257
PTZ00008 PTZ00008
(NAP-S) nucleosome assembly protein-S; Provisional
38-161 1.54e-04

(NAP-S) nucleosome assembly protein-S; Provisional


Pssm-ID: 185394  Cd Length: 185  Bit Score: 40.18  E-value: 1.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958641162  38 NHPQMSSIISnQDEDLLSYMLSLEVEEY--NPGLRMCRMMFFFSENPYFRNDIVTKDYQLSIIGYKESDSSTIEW----- 110
Cdd:PTZ00008   46 RHPALSYLVP-EDIDILEHLKKIDLEDNldNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKNNQEKVVEVTKIKWkegks 124
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1958641162 111 -IGQAEHGYANCMQDTTRLTFFNWLCAHKFPGSNRIAEIIMDDLWPNPLYYY 161
Cdd:PTZ00008  125 pIAAAEKARSDLDDECIVWSIFEWFTEEEWQDRPDVGEIIRREIWHAPLLYY 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH