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Conserved domains on  [gi|1958807554|ref|XP_038955731|]
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pre-rRNA-processing protein TSR2 homolog isoform X1 [Rattus norvegicus]

Protein Classification

pre-rRNA-processing TSR2 family protein( domain architecture ID 10563184)

pre-rRNA-processing TSR2 family protein similar to Saccharomyces cerevisiae TSR2 that is required for 20S pre-rRNA processing

Gene Ontology:  GO:0006364

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WGG pfam10273
Pre-rRNA-processing protein TSR2; This entry represents the central conserved section of a ...
 13-127 1.41e-24

Pre-rRNA-processing protein TSR2; This entry represents the central conserved section of a family of proteins described as pre-rRNA-processing protein TSR2. The region has a distinctive WGG motif but the function is unknown.


:

Pssm-ID: 463040  Cd Length: 80  Bit Score: 92.61  E-value: 1.41e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807554  13 FGAGVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANEDVSWfpmsdssqppvtpapedlksvpylptcay 92
Cdd:pfam10273   1 FEEGVSLILSNWTALRLAVENGWGGPDSAEKRDWLAGAVVDLFNENPDLDA----------------------------- 51

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958807554  93 aadlelEEIEDFLGELMTTEFDTVVEDGSLPQVSQ 127
Cdd:pfam10273  52 ------EDLEDFLLQVMEDEFNVVVEDGSAEEVAE 80
 
Name Accession Description Interval E-value
WGG pfam10273
Pre-rRNA-processing protein TSR2; This entry represents the central conserved section of a ...
 13-127 1.41e-24

Pre-rRNA-processing protein TSR2; This entry represents the central conserved section of a family of proteins described as pre-rRNA-processing protein TSR2. The region has a distinctive WGG motif but the function is unknown.


Pssm-ID: 463040  Cd Length: 80  Bit Score: 92.61  E-value: 1.41e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807554  13 FGAGVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANEDVSWfpmsdssqppvtpapedlksvpylptcay 92
Cdd:pfam10273   1 FEEGVSLILSNWTALRLAVENGWGGPDSAEKRDWLAGAVVDLFNENPDLDA----------------------------- 51

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958807554  93 aadlelEEIEDFLGELMTTEFDTVVEDGSLPQVSQ 127
Cdd:pfam10273  52 ------EDLEDFLLQVMEDEFNVVVEDGSAEEVAE 80
 
Name Accession Description Interval E-value
WGG pfam10273
Pre-rRNA-processing protein TSR2; This entry represents the central conserved section of a ...
 13-127 1.41e-24

Pre-rRNA-processing protein TSR2; This entry represents the central conserved section of a family of proteins described as pre-rRNA-processing protein TSR2. The region has a distinctive WGG motif but the function is unknown.


Pssm-ID: 463040  Cd Length: 80  Bit Score: 92.61  E-value: 1.41e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807554  13 FGAGVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANEDVSWfpmsdssqppvtpapedlksvpylptcay 92
Cdd:pfam10273   1 FEEGVSLILSNWTALRLAVENGWGGPDSAEKRDWLAGAVVDLFNENPDLDA----------------------------- 51

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958807554  93 aadlelEEIEDFLGELMTTEFDTVVEDGSLPQVSQ 127
Cdd:pfam10273  52 ------EDLEDFLLQVMEDEFNVVVEDGSAEEVAE 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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