|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2743-2821 |
1.06e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.06e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758593 2743 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKvtaSRPFTRFRTAVRVVIAVLRLRFLVKKW 2821
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1043-1423 |
1.33e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1043 LSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKV 1122
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1123 EKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEE----NSVLWNQKETFTNeAKEREAALQKEVESLTRDQ 1198
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelRAELTLLNEEAAN-LRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1199 WESRKQSEKDRATLLSqmrvLESELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEqaaerehereeFQQE 1278
Cdd:TIGR02168 841 EDLEEQIEELSEDIES----LAAEIEELEEL---IEELESELEALLNERASLEEALALLRSELEE-----------LSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1279 IKWLEGQLRQATRPRppGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIkkdladqqllIQEEEIKHLEETNENiqrQM 1358
Cdd:TIGR02168 903 LRELESKRSELRREL--EELREKLAQLELRLEGLEVRIDNLQERLSEEYS----------LTLEEAEALENKIED---DE 967
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 1359 AQLQEELEKQRRSTEELEVVNSRN-SEIEELKAIIEHLQENQEQLQKAKaeeiEQLHEVIEKLQSE 1423
Cdd:TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAiEEYEELKERYDFLTAQKEDLTEAK----ETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-587 |
5.74e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 5.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEmaLRNEQE 199
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 200 TAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAkhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 280 LKNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLEsMKTNREEQ 359
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 360 NGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKtyqedLTVFQQRLQEAREESLESAE 439
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-----AIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 440 ISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDlkRDAEEKL 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAG 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758593 520 ASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLL 587
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-858 |
1.90e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 154 ELREMLNGRRAQELALLQSRQQCElELMREQHAREKEEMalRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCL 233
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAI-----RKLQEDLRSEHCQYLQD 308
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkaeeaRKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 309 LElRFREKEKAKELELETLQASYEDLKAQSQEEIRhlwSQLESMKTNREEQNGSWEPLLAQAShleelqhlrsdfAQQQQ 388
Cdd:PTZ00121 1295 AK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAE------------AAADE 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 389 QERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSScmfpeetsgRERKEPPDPLDLQLEQ 468
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---------AAAKKKADEAKKKAEE 1429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 469 PKAQGSLIEDYQEKLSNAEEKI---ELMKQEFQKKEAEWELSREDLKRDAEEKLASMflELREKAES--EKLSIINRFEL 543
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEakKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 544 RESSMRHLQDQQAAQISDLERSLREQQG--HLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAillREKEDCALQLltaq 621
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK---KAEEDKNMAL---- 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 622 nRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLAslESKQQAllethvak 701
Cdd:PTZ00121 1581 -RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA--EEKKKA-------- 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 702 MQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEqlQKKDSCHREILTQELEKL-KLKHAEEL 780
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAeELKKAEEE 1727
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758593 781 qsvrNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:PTZ00121 1728 ----NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1059-1546 |
9.84e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 9.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRV 1218
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE-EELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1219 LESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgpr 1298
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE------- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1299 dsQCAKLDEEVELLQEKLREKLDgfNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ---EELEKQRRSTEEL 1375
Cdd:COG1196 471 --EAALLEAALAELLEELAEAAA--RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1376 EVVNSRNSEIEELKAIIEHLQENQ---------EQLQKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTEL 1446
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1447 SCLQAEGMGGQAL------HNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEA 1520
Cdd:COG1196 627 LVAARLEAALRRAvtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500
....*....|....*....|....*.
gi 1958758593 1521 MASRIQEFEATLKAKEAIIVQRDLEI 1546
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEA 732
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2073-2586 |
1.64e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2073 YNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQV 2152
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2153 ELLAY---KVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRYGH 2229
Cdd:COG1196 309 ERRREleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2230 VTwSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ 2309
Cdd:COG1196 389 LE-ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2310 LCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSR---------SLELSEALQHERLLTEQLSRN 2380
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavAVLIGVEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2381 AQEACARQDTQAQHA--LLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE-------------- 2444
Cdd:COG1196 548 LQNIVVEDDEVAAAAieYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAryyvlgdtllgrtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2445 VSGNLRSAVDALQTHKQELGCCL-------EREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV 2517
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTlegeggsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758593 2518 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEAPGGNGPCRGSPCLGSLERDQFQEQQQELEKIRQQL 2586
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2299-2551 |
1.81e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2299 SLEKQLAQNNQLCVALKHERaakdnlqKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEAL----QHERLLT 2374
Cdd:TIGR02168 236 ELREELEELQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2375 EQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGNLRSAVD 2454
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEE--LESKLDELAEELAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2455 ALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL----RELELQRQR 2530
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleEELEELQEE 455
|
250 260
....*....|....*....|.
gi 1958758593 2531 DEHKIEQLQRLVRELRWKEEA 2551
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-543 |
2.10e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 136 QLELTQANLQKeKETALTELREMLNGRRAQELALLQSRqqcelELMREQHAREKEEMALRNEQETAELkEKFRSEMEKTV 215
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREEL-EELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 216 QMMETLkQDWESERELCLETLRKElsakhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQ 295
Cdd:TIGR02168 253 EELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 296 EDLRSEHCQylqdlelrfREKEKAKELELETLQASYEDLKAQSQEEIRhlwsQLESMKTNREEQNgswepllaqashlEE 375
Cdd:TIGR02168 327 ELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 376 LQHLRSDFAqQQQQERAQHESELEHLrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgrer 455
Cdd:TIGR02168 381 LETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL--------------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 456 keppDPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEK--LASMFLELREKAESE 533
Cdd:TIGR02168 436 ----KELQAELEELEEE---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGV 508
|
410
....*....|
gi 1958758593 534 KLSIINRFEL 543
Cdd:TIGR02168 509 KALLKNQSGL 518
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1424 |
2.43e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1139 QQL---IVELEDLRKQLQQASRELLTLKEEnSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEK--DRATLL 1213
Cdd:PRK03918 262 RELeerIEELKKEIEELEEKVKELKELKEK-AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1214 SQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdeqaaeREHEREEFQQEIKWLEgqlrqatrpr 1293
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL-------------TGLTPEKLEKELEELE---------- 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1294 ppgprdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQL------------LIQEEEIKHLEETN----ENIQRQ 1357
Cdd:PRK03918 398 ----------KAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEEYtaelKRIEKE 467
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 1358 MAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-579 |
1.08e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 119 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQ 198
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 199 ETAELKEkfrsEMEKTVQMMETLKQdWESERELcLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEV 278
Cdd:pfam12128 331 HGAFLDA----DIETAAADQEQLPS-WQSELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 279 SLKNLEAQHQAAIRKLQEDLRSEHCQYLQDL-ELRFREKEKAKELELETLQASY-EDLK---AQSQEEIRHLWSQLESMK 353
Cdd:pfam12128 405 ARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 354 TNREeqngSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLrvyfekkLNDAEKTYQEDLTVFQQRLQEAREE 433
Cdd:pfam12128 485 AEVE----RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ-------LFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 434 SLESAEISSSCMFPEETSGR--------------ERKEPPDPLDL--QLEQPKAQ-GSLIEDYQEKLSNAEEKIELMKQE 496
Cdd:pfam12128 554 VISPELLHRTDLDPEVWDGSvggelnlygvkldlKRIDVPEWAASeeELRERLDKaEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 497 FQKKEAEWELSREDLKrDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:pfam12128 634 LEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
...
gi 1958758593 577 EQE 579
Cdd:pfam12128 713 RTE 715
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
273-1165 |
1.73e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 273 KHEAEvslKNLEAQHQAAIRklQEDLRSEHCQYLQDLElrfREKEKAKEleletlqasYEDLKaqsqEEIRHLwsQLESM 352
Cdd:TIGR02168 174 RKETE---RKLERTRENLDR--LEDILNELERQLKSLE---RQAEKAER---------YKELK----AELREL--ELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 353 KTNREEQNGSWEPLLAQashLEELQHLRSDFAQQQQQERAQHEsELEHLRVYFEKKLNDAEKTYQE------DLTVFQQR 426
Cdd:TIGR02168 231 VLRLEELREELEELQEE---LKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYAlaneisRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 427 LQEAREESLESAEissscmfpeetsgrerkeppdPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWEl 506
Cdd:TIGR02168 307 LRERLANLERQLE---------------------ELEAQLEELESK---LDELAEELAELEEKLEELKEELESLEAELE- 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 507 SREDLKRDAEEKLAsmflELREKAESEKLsiiNRFELRESsmrhlQDQQAAQISDLERSLREQQGHLRQLEQELtrdevl 586
Cdd:TIGR02168 362 ELEAELEELESRLE----ELEEQLETLRS---KVAQLELQ-----IASLNNEIERLEARLERLEDRRERLQQEI------ 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 587 lcSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQll 666
Cdd:TIGR02168 424 --EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-- 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 667 alrmeletkHHSELTEQLASLESKQQALLETH-VAKMQVKHDAEIS-----ALEKRHLSNLDELESCYVADIQTIRdEHK 740
Cdd:TIGR02168 500 ---------NLEGFSEGVKALLKNQSGLSGILgVLSELISVDEGYEaaieaALGGRLQAVVVENLNAAKKAIAFLK-QNE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 741 KALELLRAELEEQLQKKDSCHREILTQELEKLKLkhAEELQSVRNSLRVKMSAqhTESGKGPAADLQGAHQQKAPAMALH 820
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV--AKDLVKFDPKLRKALSY--LLGGVLVVDDLDNALELAKKLRPGY 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 821 N----EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKpQELQASQDQGAQVRDQVFLLSRELEEC 896
Cdd:TIGR02168 646 RivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE-KALAELRKELEELEEELEQLRKELEEL 724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 897 RGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT 976
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQL----EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 977 SGAQLAAAALgemwpdegllDIDRTLPEGAETSSVCEISSHVCESFFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALD 1056
Cdd:TIGR02168 801 LREALDELRA----------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1057 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEE 1136
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
890 900 910
....*....|....*....|....*....|
gi 1958758593 1137 SEQQLIVELEDLR-KQLQQASRELLTLKEE 1165
Cdd:TIGR02168 951 LTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
486-1421 |
6.71e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 6.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 486 AEEKIELMKQEFQKKEAEwELSREDLKRDAEEKLasmfLELREKAESEKLSIINRFELRESSMRHLQDQQAA----QISD 561
Cdd:pfam02463 143 KIEIIAMMKPERRLEIEE-EAAGSRLKRKKKEAL----KKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 562 LERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDA 641
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQ----ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 642 FLldtQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAKMQvKHDAEISALEKRHLSNL 721
Cdd:pfam02463 294 EE---EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKRE-AEEEEEEELEKLQEKLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 722 DELEscyvaDIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQ-ELEKLKLKHAEELQSVRNSLrvkmsaqhtESGK 800
Cdd:pfam02463 370 QLEE-----ELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLlELARQLEDLLKEEKKEELEI---------LEEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 801 GPAADLQGAHQQKApamalhneghQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGA 880
Cdd:pfam02463 436 EESIELKQGKLTEE----------KEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 881 QVRDQVFLLSRELEEcrGELEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRI 960
Cdd:pfam02463 506 RSGLKVLLALIKDGV--GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLL 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 961 SERAGLLLDHeDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAEtSSVCEISSHVCESFFMSPENTQECEQPIRKVY 1040
Cdd:pfam02463 584 IPKLKLPLKS-IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL-KDTELTKLKESAKAKESGLRKGVSLEEGLAEK 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1041 QSLSTAVEGLLDMALDSSKQLEDARQLHRcvEKEFRHRDEEMAQAVQKQQELLERLREESAAKD--RLALELHTAEGLLE 1118
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAESELA--KEEILRRQLEIKKKEQREKEELKKLKLEAEELLadRVQEAQDKINEELK 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1119 GFKVEKAD-LQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRD 1197
Cdd:pfam02463 740 LLKQKIDEeEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1198 QWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQ 1277
Cdd:pfam02463 820 EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK 899
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1278 EIKWLEGQlrqatrprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQQLLIQEEEIKHLEETNENIQRQ 1357
Cdd:pfam02463 900 KELEEESQ------------KLNLLEEKENEIEERIKEEAEILLKYEEE--PEELLLEEADEKEKEENNKEEEEERNKRL 965
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758593 1358 MAQLQEELEKQRRSTEELEVVNSRNSEIEElkaiiehlqenqeQLQKAKAEEIEQLHEVIEKLQ 1421
Cdd:pfam02463 966 LLAKEELGKVNLMAIEEFEEKEERYNKDEL-------------EKERLEEEKKKLIRAIIEETC 1016
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1050-1452 |
2.31e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1050 LLDMALDS-SKQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQ 1128
Cdd:pfam05483 381 IITMELQKkSSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1129 EALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTrdqwESRKQSEKd 1208
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEER- 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1209 ratLLSQMRVLEseledqlvqhrgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1288
Cdd:pfam05483 532 ---MLKQIENLE-----------------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1289 AtrprppgprDSQCAKLDEEVElLQEKLREKLDGFNELVIKKDLAD-QQLLIQEEEIKHLEETNENIQRQMAQL----QE 1363
Cdd:pfam05483 592 L---------ENKCNNLKKQIE-NKNKNIEELHQENKALKKKGSAEnKQLNAYEIKVNKLELELASAKQKFEEIidnyQK 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1364 ELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQKAKAEEI-----------EQLHEVIEKLQSELSLMGPTVH 1432
Cdd:pfam05483 662 EIEDKKISEEKLL------EEVEKAKAIADEAVKLQKEIDKRCQHKIaemvalmekhkHQYDKIIEERDSELGLYKNKEQ 735
|
410 420
....*....|....*....|
gi 1958758593 1433 EMSDLpPGSLHTELSCLQAE 1452
Cdd:pfam05483 736 EQSSA-KAALEIELSNIKAE 754
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
234-534 |
3.86e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.24 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKaelekifqaKHEAEVSLKNLEAQHQAAIRKlQEDLRSEHCQYLQDLELRF 313
Cdd:NF033838 109 EKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVAEATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEI 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 314 REKE-KAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKtnreeqngswepllAQASHLEELQHLRsdfaqqqqqERA 392
Cdd:NF033838 179 AESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK--------------AEATRLEKIKTDR---------EKA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 393 QHESEL---EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETsgrerkePPDPlDLQLEQP 469
Cdd:NF033838 234 EEEAKRradAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEET-------LPSP-SLKPEKK 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 470 KAQGS-LIEDYQEKLSNAEEK--------------IELMKQEFQKKEAEWELSREDLKRDA-EEKLAsmflELREKAESE 533
Cdd:NF033838 306 VAEAEkKVEEAKKKAKDQKEEdrrnyptntyktleLEIAESDVKVKEAELELVKEEAKEPRnEEKIK----QAKAKVESK 381
|
.
gi 1958758593 534 K 534
Cdd:NF033838 382 K 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1329-1551 |
3.89e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1329 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKA 1407
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1408 EEIEQLHEVIEKLQselsLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLladhghSQALE 1487
Cdd:COG4942 101 AQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758593 1488 ALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNK 1551
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2076-2551 |
4.08e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2076 LVKKLEKVIQEQGDLQKVREHAclpDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 2155
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2156 AYKVEQEKCIANDLQKTLSKEQEA------ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRlrygh 2229
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK----- 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2230 vtwsysgtSSASAGRAVLDGKENELKVVLEElecERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNnq 2309
Cdd:PTZ00121 1472 --------ADEAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE-- 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2310 lcvALKHERAAKDNLQKELQiEASRCEALLAQEKGQLSELRKSL---EAERSRSLELSEALQHERLLTEQLSRNAQEACA 2386
Cdd:PTZ00121 1539 ---AKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2387 RQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCC 2466
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2467 LEREREKAAWLQAELEQLSARVKQQEARQDEK----RMDRRSSREDLDKRKwqrvKEKLRELELQRQRDEHKIEQLQRLV 2542
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
....*....
gi 1958758593 2543 RELRWKEEA 2551
Cdd:PTZ00121 1771 EEIRKEKEA 1779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
508-1159 |
1.06e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 508 REDLKRDAEekLASMFLELREKAE----SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRD 583
Cdd:COG1196 202 LEPLERQAE--KAERYRELKEELKeleaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 584 EVLLcsqcgkepsVAQDEKSAILLREKEDC--ALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKhshelqllqqgh 661
Cdd:COG1196 280 ELEL---------EEAQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEE------------ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 662 qqqLLALRMELEtkhhsELTEQLASLESKQQALLEthvakmqvkhdaEISALEKRHLSNLDELESCYVADIQTIRDEHKK 741
Cdd:COG1196 339 ---LEELEEELE-----EAEEELEEAEAELAEAEE------------ALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 742 ALELLRAELEEQLQKKDschREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTEsgkgpAADLQGAHQQKAPAMALHN 821
Cdd:COG1196 399 AAQLEELEEAEEALLER---LERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-----AELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 822 EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHtvEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELE 901
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYE--GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 902 QLQQRRERENQEGAtlicmlrADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQL 981
Cdd:COG1196 549 QNIVVEDDEVAAAA-------IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 982 AAAALGEMWPDEGLLDIDRTLPEGAETSSvceisshvcesffmspentqeceQPIRKVYQSLSTAVEGLLDMALDSSKQL 1061
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVT-----------------------LEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1062 EDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQL 1141
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
650
....*....|....*...
gi 1958758593 1142 IVELEDLRKQLQQASREL 1159
Cdd:COG1196 759 PPDLEELERELERLEREI 776
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2308-2551 |
1.87e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2308 NQLCVALKHERAAKDNLQKElQIEASRCEALLAQEKGQLSEL---RKSLEAERSRSLELSEAL----QHERLLTE---QL 2377
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVerrRKLEEAEKARQAEMDRQAaiyaEQERMAMErerEL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2378 SRNAQEACARQDTQAQHallRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAV---- 2453
Cdd:pfam17380 351 ERIRQEERKRELERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEqira 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2454 ---DALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQR 2530
Cdd:pfam17380 428 eqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260
....*....|....*....|.
gi 1958758593 2531 DEHKIEQLQRLVRELRWKEEA 2551
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKA 528
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1303-1423 |
2.02e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1303 AKLDEEVELLQE---KLREKLDGFN-ELVIKKDLA------DQQLL-IQEEEIKHLEETNENIQRQMAQLQEELEkqrrs 1371
Cdd:smart00787 161 KLLMKELELLNSikpKLRDRKDALEeELRQLKQLEdeledcDPTELdRAKEKLKKLLQEIMIKVKKLEELEEELQ----- 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 1372 teELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:smart00787 236 --ELEsKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
198-345 |
2.80e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 198 QETAELKEKFRSEMEKTVQMMETLKQDWESeRELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKifQAKHEAE 277
Cdd:cd16269 149 EDREKLVEKYRQVPRKGVKAEEVLQEFLQS-KEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLE--EQQRELE 225
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 278 VSLKNLEAQHQAAIRKLQEDLRSEHCQYLQDLE--LRFREKEKAKELELETLQASyedlkAQSQEEIRHL 345
Cdd:cd16269 226 QKLEDQERSYEEHLRQLKEKMEEERENLLKEQEraLESKLKEQEALLEEGFKEQA-----ELLQEEIRSL 290
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1328-1602 |
3.02e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1328 IKKDLADQQLLIQ----EEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQ 1403
Cdd:TIGR02168 218 LKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1404 KAKAEEIEQLHEVIEKLQSELSlMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLadhghS 1483
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-----E 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1484 QALEALQERLQDAEAAAArhltELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWKVSHSVELEAL 1563
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958758593 1564 LLALAHFQHA-VEQQTSATPDEPPKLQQLLVQCARLSHQL 1602
Cdd:TIGR02168 448 ELEELQEELErLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| BspD6I-like |
cd22316 |
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction ... |
1303-1423 |
3.34e-03 |
|
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction endonuclease nicking endonuclease BspD6I recognizes a pseudosymmetric DNA sequence (5'-GAGTC) and cuts both strands outside the recognition motif 4 nucleotides downstream. It forms the large subunit in a heterodimeric arrangement. This catalytic domain/subunit belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411720 Cd Length: 345 Bit Score: 42.67 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1303 AKLDEEVELLQEKLREKLDGFNELVIKKDLADqqlliqeeeIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS-- 1380
Cdd:cd22316 38 EKKVEVEEILSNVERKPIFFDSDDDYLEYLFN---------PALPPLDNDDKANLVLELLRIRLKERGILIKISSKPLlt 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1958758593 1381 ---RNSEIEELKAIIEHLQENQeqLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:cd22316 109 padLNIIRKELENKLKKLREKK--YAKRQAEDWEEILEYFDLIENR 152
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2743-2821 |
1.06e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.06e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758593 2743 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKvtaSRPFTRFRTAVRVVIAVLRLRFLVKKW 2821
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1043-1423 |
1.33e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1043 LSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKV 1122
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1123 EKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEE----NSVLWNQKETFTNeAKEREAALQKEVESLTRDQ 1198
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelRAELTLLNEEAAN-LRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1199 WESRKQSEKDRATLLSqmrvLESELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEqaaerehereeFQQE 1278
Cdd:TIGR02168 841 EDLEEQIEELSEDIES----LAAEIEELEEL---IEELESELEALLNERASLEEALALLRSELEE-----------LSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1279 IKWLEGQLRQATRPRppGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIkkdladqqllIQEEEIKHLEETNENiqrQM 1358
Cdd:TIGR02168 903 LRELESKRSELRREL--EELREKLAQLELRLEGLEVRIDNLQERLSEEYS----------LTLEEAEALENKIED---DE 967
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 1359 AQLQEELEKQRRSTEELEVVNSRN-SEIEELKAIIEHLQENQEQLQKAKaeeiEQLHEVIEKLQSE 1423
Cdd:TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAiEEYEELKERYDFLTAQKEDLTEAK----ETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-587 |
5.74e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 5.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEmaLRNEQE 199
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 200 TAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAkhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 280 LKNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLEsMKTNREEQ 359
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 360 NGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKtyqedLTVFQQRLQEAREESLESAE 439
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-----AIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 440 ISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDlkRDAEEKL 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAG 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758593 520 ASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLL 587
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1080-1420 |
6.41e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 6.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1080 EEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQlivELEDLRKQLQQASREL 1159
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1160 LTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQS----EKDRATLLSQMRVLESELEDQlvqHRGCAQ 1235
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElsklEEEVSRIEARLREIEQKLNRL---TLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1236 LAEEVTTLKQQLATLDkhlrSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEK 1315
Cdd:TIGR02169 831 LEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL---------ESRLGDLKKERDELEAQ 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1316 LREKLDGFNELVIKKDLADQQLL-------IQEEEIKHLEETNENIQRQMA------QLQEELEKQRRSTEELEVVNsrN 1382
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSelkakleALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEPVN--M 975
|
330 340 350
....*....|....*....|....*....|....*...
gi 1958758593 1383 SEIEELKAIIEHLQENQEQLQKAKAEEiEQLHEVIEKL 1420
Cdd:TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEER-KAILERIEEY 1012
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-858 |
1.90e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 154 ELREMLNGRRAQELALLQSRQQCElELMREQHAREKEEMalRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCL 233
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAI-----RKLQEDLRSEHCQYLQD 308
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkaeeaRKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 309 LElRFREKEKAKELELETLQASYEDLKAQSQEEIRhlwSQLESMKTNREEQNGSWEPLLAQAShleelqhlrsdfAQQQQ 388
Cdd:PTZ00121 1295 AK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAE------------AAADE 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 389 QERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSScmfpeetsgRERKEPPDPLDLQLEQ 468
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---------AAAKKKADEAKKKAEE 1429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 469 PKAQGSLIEDYQEKLSNAEEKI---ELMKQEFQKKEAEWELSREDLKRDAEEKLASMflELREKAES--EKLSIINRFEL 543
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEakKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 544 RESSMRHLQDQQAAQISDLERSLREQQG--HLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAillREKEDCALQLltaq 621
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK---KAEEDKNMAL---- 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 622 nRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLAslESKQQAllethvak 701
Cdd:PTZ00121 1581 -RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA--EEKKKA-------- 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 702 MQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEqlQKKDSCHREILTQELEKL-KLKHAEEL 780
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAeELKKAEEE 1727
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758593 781 qsvrNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVE 858
Cdd:PTZ00121 1728 ----NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-716 |
1.92e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 1.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 144 LQKEKETAL--TELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETL 221
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE-ELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 222 KQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSE 301
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 302 HCQYLQDLELRFREKEKAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 382 DFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEPPDP 461
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 462 LDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEKLASMFLELREKAESEKLSIINRF 541
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 542 ELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEpsVAQDEKSAILLREKEDCALQLLTAQ 621
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE--GGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 622 NRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAK 701
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
570
....*....|....*.
gi 1958758593 702 MQV-KHDAEISALEKR 716
Cdd:COG1196 760 PDLeELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1121-1424 |
5.38e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 5.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1121 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEEnsvlWNQKETFTNEAKEREAALQKEVESLTRDQWE 1200
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE----LEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1201 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIK 1280
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1281 WLEGQLRQATRprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ 1360
Cdd:TIGR02168 832 RIAATERRLED------LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958758593 1361 LQEELEKQRRSTEEL-EVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:TIGR02168 906 LESKRSELRRELEELrEKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1059-1690 |
9.23e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 9.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKEtftnEAKEREAALQKEVESLTRDQWE-SRKQSEKDRATLLSQMR 1217
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1218 VLESELEDQLVQHRGC-----------AQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF--QQEIKWLEG 1284
Cdd:TIGR02168 444 ELEEELEELQEELERLeealeelreelEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknQSGLSGILG 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1285 QLRQATRPRP----------PGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETN--- 1351
Cdd:TIGR02168 524 VLSELISVDEgyeaaieaalGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFlgv 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1352 -------------------------ENIQRQMAQLQEELEKQRRSTEELEVVN-----------------SRNSEIEELK 1389
Cdd:TIGR02168 604 akdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnssilERRREIEELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1390 AIIEHLQENQEQLQKA---KAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCL----QAEGMGGQALHNE 1462
Cdd:TIGR02168 684 EKIEELEEKIAELEKAlaeLRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEeriaQLSKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1463 LQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQR 1542
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1543 DLEIDAVNK--WKVSHSVELEALLLALAHFQHAVEQQTSATPDEPPK-----LQQLLVQCARLSHQLHVLYRRFLRCQVE 1615
Cdd:TIGR02168 844 EEQIEELSEdiESLAAEIEELEELIEELESELEALLNERASLEEALAllrseLEELSEELRELESKRSELRRELEELREK 923
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958758593 1616 LGQHQPRVasvgcadppAEAQGKRDGELEQdgvssglALAPHSLVAQAKEEQPEDCHLGNTSLRAQLRQLEEKLD 1690
Cdd:TIGR02168 924 LAQLELRL---------EGLEVRIDNLQER-------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1059-1546 |
9.84e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 9.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1139 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRV 1218
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE-EELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1219 LESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgpr 1298
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE------- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1299 dsQCAKLDEEVELLQEKLREKLDgfNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ---EELEKQRRSTEEL 1375
Cdd:COG1196 471 --EAALLEAALAELLEELAEAAA--RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1376 EVVNSRNSEIEELKAIIEHLQENQ---------EQLQKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTEL 1446
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1447 SCLQAEGMGGQAL------HNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEA 1520
Cdd:COG1196 627 LVAARLEAALRRAvtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500
....*....|....*....|....*.
gi 1958758593 1521 MASRIQEFEATLKAKEAIIVQRDLEI 1546
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEA 732
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1041-1553 |
1.22e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1041 QSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGF 1120
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1121 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwE 1200
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE-E 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1201 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIK 1280
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1281 WLEGQLRQATRPR--PPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQM 1358
Cdd:COG1196 502 DYEGFLEGVKAALllAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1359 AQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQ--EQLQKAKAEEIEQLHEVIEKLQSELSLmgptvhEMSD 1436
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTL------EGEG 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1437 LPPGSLHTElscLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEhcvALRQA 1516
Cdd:COG1196 656 GSAGGSLTG---GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQ 729
|
490 500 510
....*....|....*....|....*....|....*..
gi 1958758593 1517 EVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWK 1553
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-648 |
2.38e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 135 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQ---ETAELKEKF---- 207
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkKADAAKKKAeeak 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 208 ------RSEMEKTVQMMETLKQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQK----------AELEKIFQ 271
Cdd:PTZ00121 1343 kaaeaaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkadelkkaaAAKKKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLR--SEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQL 349
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 350 ---ESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQR 426
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 427 LQEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQ-PKAQGSLIEDYQEKLSNAEEKIElmKQEFQKKEAEWE 505
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 506 LSREDLKR-DAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDE 584
Cdd:PTZ00121 1661 IKAAEEAKkAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 585 VLlcSQCGKEPSVAQDEKSAI--LLREKEDCALQLLTAQNRFLEER-KEIMEKFAKEQDAFLLDTQE 648
Cdd:PTZ00121 1741 ED--KKKAEEAKKDEEEKKKIahLKKEEEKKAEEIRKEKEAVIEEElDEEDEKRRMEVDKKIKDIFD 1805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1147-1495 |
2.56e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1147 DLRKQLQQASRELLTLKeensvlWNQKETFTNEAKEREAALQKEVESLTRDQwesrKQSEKDRATLLSQMRVLESELEDQ 1226
Cdd:TIGR02168 217 ELKAELRELELALLVLR------LEELREELEELQEELKEAEEELEELTAEL----QELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1227 lvQHRgCAQLAEEVTTLKQQLATLD---KHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATrprppGPRDSQCA 1303
Cdd:TIGR02168 287 --QKE-LYALANEISRLEQQKQILRerlANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK-----EELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1304 KLDEEVELLQE---KLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS 1380
Cdd:TIGR02168 359 ELEELEAELEElesRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1381 RnSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSlmgptvhEMSDLppGSLHTELSCLQAEGMG-GQAL 1459
Cdd:TIGR02168 439 Q-AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER-------ELAQL--QARLDSLERLQENLEGfSEGV 508
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958758593 1460 HNELQAAQAAKGAFGQLL----ADHGHSQALE-ALQERLQD 1495
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSelisVDEGYEAAIEaALGGRLQA 549
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1429 |
2.98e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 2.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 870 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGET 949
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 950 LKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEgaetssvceisshvcesffmspent 1029
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE------------------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1030 qeceqpIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALE 1109
Cdd:COG1196 370 ------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1110 LHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQK 1189
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1190 EVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTL------KQQLATLDKHLRSQRQFMDE 1263
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkirARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1264 QAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEE 1343
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1344 IKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEE------------IE 1411
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeealeelpeppdLE 763
|
570
....*....|....*...
gi 1958758593 1412 QLHEVIEKLQSELSLMGP 1429
Cdd:COG1196 764 ELERELERLEREIEALGP 781
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
208-917 |
7.33e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 7.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 208 RSEMEKTVQMMETLKqdwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQH 287
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLK---PSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARK 1135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 288 QAAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELetlqasyedlkAQSQEEIRHLWSQLESMKTNREEQngsweplL 367
Cdd:PTZ00121 1136 AEDARKAEEARKAEDAKRVEIA----RKAEDARKAEE-----------ARKAEDAKKAEAARKAEEVRKAEE-------L 1193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 368 AQASHLEELQHLRsdfaqqqqqeRAQHESELEHLRVYFEKKLNDAEKTYQEdltvFQQRLQEAREESLESAEISSSCMFP 447
Cdd:PTZ00121 1194 RKAEDARKAEAAR----------KAEEERKAEEARKAEDAKKAEAVKKAEE----AKKDAEEAKKAEEERNNEEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 448 EETSGRERKEPPDPLDlqlEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEE--KLASmflE 525
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAE---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakKKAD---A 1333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 526 LREKAE-SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSA 604
Cdd:PTZ00121 1334 AKKKAEeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 605 ILLREKEDcALQLLTAQNRFLEERKEIMEKfAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQL 684
Cdd:PTZ00121 1414 AAAKKKAD-EAKKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 685 ASlESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREI 764
Cdd:PTZ00121 1492 AE-EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 765 LTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESGKGPAADLQGAHQQKAPAMALHNEghQLEEDGDAALGGADTEDLQH 844
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKK 1648
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 845 HAEPREREGPHTV----EMQTSQTELAKPQELQASQDQGAQVRDQvflLSRELEECRgELEQLQQRRERENQEGATL 917
Cdd:PTZ00121 1649 AEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAK-KAEELKKKEAEEKKKAEEL 1721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2073-2586 |
1.64e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2073 YNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQV 2152
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2153 ELLAY---KVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRYGH 2229
Cdd:COG1196 309 ERRREleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2230 VTwSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ 2309
Cdd:COG1196 389 LE-ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2310 LCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSR---------SLELSEALQHERLLTEQLSRN 2380
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavAVLIGVEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2381 AQEACARQDTQAQHA--LLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE-------------- 2444
Cdd:COG1196 548 LQNIVVEDDEVAAAAieYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAryyvlgdtllgrtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2445 VSGNLRSAVDALQTHKQELGCCL-------EREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV 2517
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTlegeggsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758593 2518 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEAPGGNGPCRGSPCLGSLERDQFQEQQQELEKIRQQL 2586
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1087-1425 |
4.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 4.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1087 QKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIV-ELEDLRKQLQQASRELLTLKEE 1165
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1166 nsvlwnqKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQ 1245
Cdd:TIGR02169 253 -------LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA----------SLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1246 QLatldkhlrsqrQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRppgprdsqcAKLDEEVELLQEKLREKLDGFNE 1325
Cdd:TIGR02169 316 EL-----------EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR---------DKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1326 LVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEEL------------EVVNSRNSEIEELKAIIE 1393
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLnaaiagieakinELEEEKEDKALEIKKQEW 455
|
330 340 350
....*....|....*....|....*....|..
gi 1958758593 1394 HLQENQEQLQKAKaEEIEQLHEVIEKLQSELS 1425
Cdd:TIGR02169 456 KLEQLAADLSKYE-QELYDLKEEYDRVEKELS 486
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
147-781 |
8.96e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 8.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 147 EKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWE 226
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 227 SERELCL---ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEkifQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEhc 303
Cdd:PTZ00121 1289 KKKADEAkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD---AAKKKAEEAKKAAEAAKAEAEAAADEAEAAE-- 1363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 304 qylqdlelrfrEKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDF 383
Cdd:PTZ00121 1364 -----------EKAEAAEKKKEEAKKKADAAKKKAEEK-----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 384 AQQQQQERAQHESELehlrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEISsscmfpEETSGRERKEPPDPLD 463
Cdd:PTZ00121 1428 EEKKKADEAKKKAEE-------AKKADEAKKKAEE-----AKKAEEAKKKAEEAKKAD------EAKKKAEEAKKADEAK 1489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 464 LQLEQPKAQGSLIEDYQEKLSNAEE--KIELMKQEFQKKEAEWELSREDLKRDAEEKLASmflELREKAESEKLSIINRF 541
Cdd:PTZ00121 1490 KKAEEAKKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 542 E--LRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVllcsqcgkepSVAQDEK-SAILLREKEDCALQLL 618
Cdd:PTZ00121 1567 EeaKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA----------KKAEEAKiKAEELKKAEEEKKKVE 1636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 619 TAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETH 698
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 699 VAKmQVKHDAEISALEKRHLSNLDElESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAE 778
Cdd:PTZ00121 1717 KAE-ELKKAEEENKIKAEEAKKEAE-EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
...
gi 1958758593 779 ELQ 781
Cdd:PTZ00121 1795 EVD 1797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1420 |
9.26e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 9.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 870 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATL---ICMLRADVDLAQSEGKALRDALRRLLDLF 946
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELeeeLAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 947 GETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSVCEisshvcesffmsp 1026
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE------------- 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1027 ENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRL 1106
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1107 ALELHTAEGLLEGFKVEKA-----DLQEALGKKEESEQQLIVEL-----EDLRKQLQQASRELLTLKEENSvlwnQKETF 1176
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLrglagAVAVLIGVEAAYEAALEAALaaalqNIVVEDDEVAAAAIEYLKAAKA----GRATF 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1177 TNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR-GCAQLAEEVTTLKQQLATLDKHLR 1255
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARlEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1256 SQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQ 1335
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1336 QLLIQEEEIKHLEETNENIQRQM---AQLQEELEKQRRSTEELEVVNSRnsEIEELKAIIEHLQENQEQLQKAKaEEIEQ 1412
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPpdlEELERELERLEREIEALGPVNLL--AIEEYEELEERYDFLSEQREDLE-EARET 813
|
....*...
gi 1958758593 1413 LHEVIEKL 1420
Cdd:COG1196 814 LEEAIEEI 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1060-1289 |
1.51e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1060 QLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQ 1139
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1140 QLIVELEDLRKQL---QQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLtrdqwESRKQSEKDRATLLSQM 1216
Cdd:TIGR02168 348 ELKEELESLEAELeelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL-----EARLERLEDRRERLQQE 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 1217 RvleSELEDQLVQHRgCAQLAEEVTTLKQQLATLDKHLRsqrqFMDEQAAEREHEREEFQQEIKWLEGQLRQA 1289
Cdd:TIGR02168 423 I---EELLKKLEEAE-LKELQAELEELEEELEELQEELE----RLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2149-2503 |
1.69e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2149 RRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRyg 2228
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2229 hvtwsysgtssasAGRAVLDGKENELKVVLEELECERgkgqVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNN 2308
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEEL----AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2309 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQhERLLTEQLSRNAQEACARQ 2388
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2389 DTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRR---EKEVSGNLRSAVDALQTHKQELGC 2465
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLleaEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350
....*....|....*....|....*....|....*....
gi 1958758593 2466 -CLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRR 2503
Cdd:COG1196 524 gAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2299-2551 |
1.81e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2299 SLEKQLAQNNQLCVALKHERaakdnlqKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEAL----QHERLLT 2374
Cdd:TIGR02168 236 ELREELEELQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2375 EQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGNLRSAVD 2454
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEE--LESKLDELAEELAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2455 ALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL----RELELQRQR 2530
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleEELEELQEE 455
|
250 260
....*....|....*....|.
gi 1958758593 2531 DEHKIEQLQRLVRELRWKEEA 2551
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-543 |
2.10e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 136 QLELTQANLQKeKETALTELREMLNGRRAQELALLQSRqqcelELMREQHAREKEEMALRNEQETAELkEKFRSEMEKTV 215
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREEL-EELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 216 QMMETLkQDWESERELCLETLRKElsakhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQ 295
Cdd:TIGR02168 253 EELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 296 EDLRSEHCQylqdlelrfREKEKAKELELETLQASYEDLKAQSQEEIRhlwsQLESMKTNREEQNgswepllaqashlEE 375
Cdd:TIGR02168 327 ELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 376 LQHLRSDFAqQQQQERAQHESELEHLrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgrer 455
Cdd:TIGR02168 381 LETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL--------------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 456 keppDPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEK--LASMFLELREKAESE 533
Cdd:TIGR02168 436 ----KELQAELEELEEE---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGV 508
|
410
....*....|
gi 1958758593 534 KLSIINRFEL 543
Cdd:TIGR02168 509 KALLKNQSGL 518
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1424 |
2.43e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1138
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1139 QQL---IVELEDLRKQLQQASRELLTLKEEnSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEK--DRATLL 1213
Cdd:PRK03918 262 RELeerIEELKKEIEELEEKVKELKELKEK-AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1214 SQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdeqaaeREHEREEFQQEIKWLEgqlrqatrpr 1293
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL-------------TGLTPEKLEKELEELE---------- 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1294 ppgprdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQL------------LIQEEEIKHLEETN----ENIQRQ 1357
Cdd:PRK03918 398 ----------KAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEEYtaelKRIEKE 467
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 1358 MAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-471 |
5.73e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 5.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 138 ELTQANLQKEKEtaltELREMLNGRRAQELALLQSRQQCELELMREQHAREKEE--MALRNEQETAELKEKFRSEMEKTV 215
Cdd:PTZ00121 1526 EAKKAEEAKKAD----EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKAEEAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 216 QMMETLKQDW---ESERELCLETLRKELSAKHQSEmeglqnQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIR 292
Cdd:PTZ00121 1602 EEEKKMKAEEakkAEEAKIKAEELKKAEEEKKKVE------QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 293 KLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASyEDLKAQS---QEEIRHLwsQLESMKTNREEQNGSWEPLLAQ 369
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-EKKKAEElkkAEEENKI--KAEEAKKEAEEDKKKAEEAKKD 1752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 370 ASHLEELQHLRSDFAQQQQQERAQHESEL-EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEissscmfPE 448
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIeEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVIND-------SK 1825
|
330 340
....*....|....*....|...
gi 1958758593 449 ETSGRERKEPPDPLDLQLEQPKA 471
Cdd:PTZ00121 1826 EMEDSAIKEVADSKNMQLEEADA 1848
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1040-1376 |
5.93e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 5.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1040 YQSLSTAVEGL-LDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRlalELHTAEGLLE 1118
Cdd:TIGR02168 215 YKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1119 GFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEEnsvlwnqketfTNEAKEREAALQKEVESLtrdq 1198
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE-----------LAELEEKLEELKEELESL---- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1199 wesrkqsEKDRATLLSQMRVLESELEDQLVQHRgcaQLAEEVTTLKQQLATldkhLRSQRQFMDEQAAEREHEREEFQQE 1278
Cdd:TIGR02168 357 -------EAELEELEAELEELESRLEELEEQLE---TLRSKVAQLELQIAS----LNNEIERLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1279 IKWLEGQLRQAtrprppgprdsqcakldeEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQM 1358
Cdd:TIGR02168 423 IEELLKKLEEA------------------ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330
....*....|....*...
gi 1958758593 1359 AQLQEELEKQRRSTEELE 1376
Cdd:TIGR02168 485 AQLQARLDSLERLQENLE 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1056-1394 |
6.72e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 6.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1056 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQ-KQQELLERLREESAAKDRLALELHTAEgllEGFKVEKADLQEALGKK 1134
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1135 EESEQqliVELEDLRKQLQQASR--ELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRatl 1212
Cdd:PTZ00121 1602 EEEKK---MKAEEAKKAEEAKIKaeELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK--- 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1213 lsQMRVLESELEDQLVQHRGCAQLAEEvttlKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRP 1292
Cdd:PTZ00121 1676 --KAEEAKKAEEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1293 RPPGPRDSQCAKLDEEVELLQEKLR-EKLDGFNELVIKKDlaDQQLLIQEEEIKHLEETNENIQR--QMAQLQEELEKQR 1369
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRkEKEAVIEEELDEED--EKRRMEVDKKIKDIFDNFANIIEggKEGNLVINDSKEM 1827
|
330 340
....*....|....*....|....*
gi 1958758593 1370 RSTEELEVVNSRNSEIEELKAIIEH 1394
Cdd:PTZ00121 1828 EDSAIKEVADSKNMQLEEADAFEKH 1852
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
158-495 |
7.51e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 158 MLNGRRAQELALLQSRQQcelELmrEQHAREKEEMALRNEQETAELKEKfRSEMEKTVQMMETLKQDWES-ERELCLETL 236
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR---EI--EELEEKIEELEEKIAELEKALAEL-RKELEELEEELEQLRKELEElSRQISALRK 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 237 RKELSAKHQSEMEGLQNQFQKELSEQKAE-------LEKIFQAKHEAEVSLKNLEA---QHQAAIRKLQEDLRSEHCQY- 305
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEieeleerLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELt 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 306 -LQDLELRFREKEKAKELELETLQASYEDLKAQS---QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:TIGR02168 814 lLNEEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 382 DFAQQQQQERAQHESELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISsscmfPEETSGRERKEPPDP 461
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-----LEEAEALENKIEDDE 967
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1958758593 462 LDLQLEQPKAQGSL----------IEDYQEKlsnAEEKIELMKQ 495
Cdd:TIGR02168 968 EEARRRLKRLENKIkelgpvnlaaIEEYEEL---KERYDFLTAQ 1008
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-579 |
1.08e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 119 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQ 198
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 199 ETAELKEkfrsEMEKTVQMMETLKQdWESERELcLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEV 278
Cdd:pfam12128 331 HGAFLDA----DIETAAADQEQLPS-WQSELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 279 SLKNLEAQHQAAIRKLQEDLRSEHCQYLQDL-ELRFREKEKAKELELETLQASY-EDLK---AQSQEEIRHLWSQLESMK 353
Cdd:pfam12128 405 ARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 354 TNREeqngSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLrvyfekkLNDAEKTYQEDLTVFQQRLQEAREE 433
Cdd:pfam12128 485 AEVE----RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ-------LFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 434 SLESAEISSSCMFPEETSGR--------------ERKEPPDPLDL--QLEQPKAQ-GSLIEDYQEKLSNAEEKIELMKQE 496
Cdd:pfam12128 554 VISPELLHRTDLDPEVWDGSvggelnlygvkldlKRIDVPEWAASeeELRERLDKaEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 497 FQKKEAEWELSREDLKrDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:pfam12128 634 LEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
...
gi 1958758593 577 EQE 579
Cdd:pfam12128 713 RTE 715
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1059-1428 |
1.13e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEKEFRHRDEEMAQaVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKvEKADLQEALGKKEESE 1138
Cdd:COG4717 95 EELEELEEELEELEAELEELREELEK-LEKLLQLLPLYQELEALEAELAELPERLEELEERLE-ELRELEEELEELEAEL 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1139 QQLIVELEDLRKQLQQASR-ELLTLKEENSVLWNQKETFTNE---AKEREAALQKEVESLTRDQWESRKQSEKDRATLLS 1214
Cdd:COG4717 173 AELQEELEELLEQLSLATEeELQDLAEELEELQQRLAELEEEleeAQEELEELEEELEQLENELEAAALEERLKEARLLL 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1215 QMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDkHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRP 1294
Cdd:COG4717 253 LIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL-FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1295 PGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQ--RQMAQLQEELEKQRRST 1372
Cdd:COG4717 332 PDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQL 411
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 1373 EELEVVNSRNSEIEELKAIIEHLQENQEQLQkAKAEEIEQLHEVIEKLQSELSLMG 1428
Cdd:COG4717 412 EELLGELEELLEALDEEELEEELEELEEELE-ELEEELEELREELAELEAELEQLE 466
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
257-639 |
1.28e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 257 KELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE------DLRSEhcqyLQDLELRFREKEKAKEL--ELETLQ 328
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisselpELREE----LEKLEKEVKELEELKEEieELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 329 ASYEDLKAQSQEEIRHLWSQLESMKTNREEqngswepLLAQASHLEELQhlrsdfaqqqqqERAQHESELEHLRVYFEKK 408
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEE-------LEEKVKELKELK------------EKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 409 LNDAEKT---YQEDLTVFQQRLQEAREESLESAEISSscmfpEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSN 485
Cdd:PRK03918 309 LREIEKRlsrLEEEINGIEERIKELEEKEERLEELKK-----KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 486 AE-EKIELMKQEFQKKEAEWElsredlkrDAEEKLASMFLELREKAESEKLSIIN-----------RFELRESSMRHLQD 553
Cdd:PRK03918 384 LTpEKLEKELEELEKAKEEIE--------EEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 554 QQAAQISDLERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKED----CALQLLTAQNRFLEERK 629
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVL----KKESELIKLKELAEQLKELEEklkkYNLEELEKKAEEYEKLK 531
|
410
....*....|
gi 1958758593 630 EIMEKFAKEQ 639
Cdd:PRK03918 532 EKLIKLKGEI 541
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1062-1415 |
1.47e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1062 EDARQLHRCVEKEFRHRdEEMAQAVQKQQELLERLREE-SAAKDRLALELHTAEGLlegfkvekADLQEALGKKEESEQQ 1140
Cdd:PRK02224 258 AEIEDLRETIAETERER-EELAEEVRDLRERLEELEEErDDLLAEAGLDDADAEAV--------EARREELEDRDEELRD 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1141 livELEDLRKQLQQASRELLTLKEENSVLwnqkETFTNEAKEREAALQKEVESlTRDQWESRkqsEKDRATLLSQMRVLE 1220
Cdd:PRK02224 329 ---RLEECRVAAQAHNEEAESLREDADDL----EERAEELREEAAELESELEE-AREAVEDR---REEIEELEEEIEELR 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1221 SELEDQLVQHRGCA----QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREH-----------------EREEFQQEI 1279
Cdd:PRK02224 398 ERFGDAPVDLGNAEdfleELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphveTIEEDRERV 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1280 KWLEGQLRQAtrprppgprDSQCAKLDEEVELLqEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMA 1359
Cdd:PRK02224 478 EELEAELEDL---------EEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1360 QLQEELEKQRRSTEE----------------------------LEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIE 1411
Cdd:PRK02224 548 ELEAEAEEKREAAAEaeeeaeeareevaelnsklaelkeriesLERIRTLLAAIADAEDEIERLREKREALAELNDERRE 627
|
....
gi 1958758593 1412 QLHE 1415
Cdd:PRK02224 628 RLAE 631
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
123-790 |
1.71e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 123 EALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQE----LALLQSRQQCELELMREQHAREKEEMALR--- 195
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyLDYLKLNEERIDLLQELLRDEQEEIESSKqei 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 196 -NEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKH--QSEMEGLQNQFQKELSEQKAELEKIFQA 272
Cdd:pfam02463 261 eKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVddEEKLKESEKEKKKAEKELKKEKEEIEEL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 273 KHEAEVSLKNLEA-----QHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELEtlqasYEDLKAQSQEEIRHLWS 347
Cdd:pfam02463 341 EKELKELEIKREAeeeeeEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-----LKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 348 QLESMKTNREEQngswepllaQASHLEELQHLRsDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRL 427
Cdd:pfam02463 416 QLEDLLKEEKKE---------ELEILEEEEESI-ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 428 QEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELS 507
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 508 REDLKRDAEEKLASMFLELREKAESEKLSIINRFELRessMRHLQDQQAAQISDLERSLR-EQQGHLRQLEQELTRDEVL 586
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI---LNLAQLDKATLEADEDDKRAkVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 587 LCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAflldtQEKHSHELQLLQQGHQQQLL 666
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR-----QLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 667 ALRMELETKHHSELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELL 746
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1958758593 747 RAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVK 790
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
273-1165 |
1.73e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 273 KHEAEvslKNLEAQHQAAIRklQEDLRSEHCQYLQDLElrfREKEKAKEleletlqasYEDLKaqsqEEIRHLwsQLESM 352
Cdd:TIGR02168 174 RKETE---RKLERTRENLDR--LEDILNELERQLKSLE---RQAEKAER---------YKELK----AELREL--ELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 353 KTNREEQNGSWEPLLAQashLEELQHLRSDFAQQQQQERAQHEsELEHLRVYFEKKLNDAEKTYQE------DLTVFQQR 426
Cdd:TIGR02168 231 VLRLEELREELEELQEE---LKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYAlaneisRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 427 LQEAREESLESAEissscmfpeetsgrerkeppdPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWEl 506
Cdd:TIGR02168 307 LRERLANLERQLE---------------------ELEAQLEELESK---LDELAEELAELEEKLEELKEELESLEAELE- 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 507 SREDLKRDAEEKLAsmflELREKAESEKLsiiNRFELRESsmrhlQDQQAAQISDLERSLREQQGHLRQLEQELtrdevl 586
Cdd:TIGR02168 362 ELEAELEELESRLE----ELEEQLETLRS---KVAQLELQ-----IASLNNEIERLEARLERLEDRRERLQQEI------ 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 587 lcSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQll 666
Cdd:TIGR02168 424 --EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-- 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 667 alrmeletkHHSELTEQLASLESKQQALLETH-VAKMQVKHDAEIS-----ALEKRHLSNLDELESCYVADIQTIRdEHK 740
Cdd:TIGR02168 500 ---------NLEGFSEGVKALLKNQSGLSGILgVLSELISVDEGYEaaieaALGGRLQAVVVENLNAAKKAIAFLK-QNE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 741 KALELLRAELEEQLQKKDSCHREILTQELEKLKLkhAEELQSVRNSLRVKMSAqhTESGKGPAADLQGAHQQKAPAMALH 820
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV--AKDLVKFDPKLRKALSY--LLGGVLVVDDLDNALELAKKLRPGY 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 821 N----EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKpQELQASQDQGAQVRDQVFLLSRELEEC 896
Cdd:TIGR02168 646 RivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE-KALAELRKELEELEEELEQLRKELEEL 724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 897 RGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT 976
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQL----EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 977 SGAQLAAAALgemwpdegllDIDRTLPEGAETSSVCEISSHVCESFFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALD 1056
Cdd:TIGR02168 801 LREALDELRA----------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1057 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEE 1136
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
890 900 910
....*....|....*....|....*....|
gi 1958758593 1137 SEQQLIVELEDLR-KQLQQASRELLTLKEE 1165
Cdd:TIGR02168 951 LTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2300-2551 |
2.38e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2300 LEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLsr 2379
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL-- 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2380 NAQEACARQDTQAQHALLRKLKAEKAralELEAMLEKVQKQAAHTQQQLEAQAQerclELRREKEVSGNLRSAVDALQTH 2459
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIE---ELEAQIEQLKEELKALREALDELRA----ELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2460 KQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQR--VKEKLRELELQRQRDEHKIEQ 2537
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALalLRSELEELSEELRELESKRSE 912
|
250
....*....|....
gi 1958758593 2538 LQRLVRELRWKEEA 2551
Cdd:TIGR02168 913 LRRELEELREKLAQ 926
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
256-582 |
3.39e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 256 QKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIR--KLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYED 333
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERykELKAELRELELALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 334 LKAQ---SQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLE-ELQHLRSDFA------QQQQQERAQHESELEHLrv 403
Cdd:TIGR02168 258 LTAElqeLEEKLEELRLEVSELEEEIEELQKELYALANEISRLEqQKQILRERLAnlerqlEELEAQLEELESKLDEL-- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 404 yfEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEppdpldlqLEQPKAQGSLIedyQEKL 483
Cdd:TIGR02168 336 --AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK--------VAQLELQIASL---NNEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 484 SNAEEKIELMKQEFQKKEAEWELSREDLKRdAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLE 563
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEE-AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
330
....*....|....*....
gi 1958758593 564 RSLREQQGHLRQLEQELTR 582
Cdd:TIGR02168 482 RELAQLQARLDSLERLQEN 500
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1074-1423 |
5.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 5.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1074 EFRHRDEEMAQAVQKQQELLERLREESAAKDrlALELHTAEGLLEgfKVEKADLQEALGKKEESEQQLivelEDLRKQLQ 1153
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKK--AEEAKKAEEAKK--KAEEAKKADEAKKKAEEAKKA----DEAKKKAE 1493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1154 QASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDqwESRKQSEKDRATLLSQMRVLESELEDQLVQHrgc 1233
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD--EAKKAEEKKKADELKKAEELKKAEEKKKAEE--- 1568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1234 AQLAEEVTTLKQQLATLDKHLRSQRqfmdeqaaeREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQ 1313
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEAR---------IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1314 EKLREKLDGFNELviKKdlADQQLLIQEEEIKHLEETNeniQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIE 1393
Cdd:PTZ00121 1640 KKEAEEKKKAEEL--KK--AEEENKIKAAEEAKKAEED---KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
330 340 350
....*....|....*....|....*....|
gi 1958758593 1394 HLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1059-1424 |
5.23e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 5.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA-----LELHTAEGLLEGFKVEKADLQEALGK 1133
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgreLTEEHRKELLEEYTAELKRIEKELKE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1134 KEESEQQLIVELEDLRKQLQQASR---------ELLTLKEENSVL----WNQKETFTNEAKEREAALQKEVESLTRDqWE 1200
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESEliklkelaeQLKELEEKLKKYnleeLEKKAEEYEKLKEKLIKLKGEIKSLKKE-LE 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1201 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEvttlkqqlaTLDKHLRSQRQFMDE--QAAEREHEREEFQQE 1278
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE---------ELEERLKELEPFYNEylELKDAEKELEREEKE 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1279 IKWLEGQLRQATRprppgprdsQCAKLDEEVELLQEKLREKLDGFNE-----LVIKKDLADQQLLIQEEEIKHLEETNEN 1353
Cdd:PRK03918 621 LKKLEEELDKAFE---------ELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREE 691
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758593 1354 IQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKaiiehlqenqEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PRK03918 692 IKKTLEKLKEELEEREKAKKELEKLEKALERVEELR----------EKVKKYKALLKERALSKVGEIASEI 752
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2070-2373 |
5.62e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2070 LGDYNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLR 2149
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEEL-----TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2150 RQVELLAYKVEQEKCIANDLQKTLSKEQEAA---SDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLR 2226
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2227 yghvtwsySGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREgqSSRALEELKISLEKQLAQ 2306
Cdd:TIGR02168 386 --------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 2307 NNQLCVALKHERAAKDNLQKELQIEASRcealLAQEKGQLSELRKSLEAERSRSLELSEALQHERLL 2373
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
486-1421 |
6.71e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 6.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 486 AEEKIELMKQEFQKKEAEwELSREDLKRDAEEKLasmfLELREKAESEKLSIINRFELRESSMRHLQDQQAA----QISD 561
Cdd:pfam02463 143 KIEIIAMMKPERRLEIEE-EAAGSRLKRKKKEAL----KKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 562 LERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDA 641
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQ----ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 642 FLldtQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAKMQvKHDAEISALEKRHLSNL 721
Cdd:pfam02463 294 EE---EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKRE-AEEEEEEELEKLQEKLE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 722 DELEscyvaDIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQ-ELEKLKLKHAEELQSVRNSLrvkmsaqhtESGK 800
Cdd:pfam02463 370 QLEE-----ELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLlELARQLEDLLKEEKKEELEI---------LEEE 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 801 GPAADLQGAHQQKApamalhneghQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGA 880
Cdd:pfam02463 436 EESIELKQGKLTEE----------KEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 881 QVRDQVFLLSRELEEcrGELEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRI 960
Cdd:pfam02463 506 RSGLKVLLALIKDGV--GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLL 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 961 SERAGLLLDHeDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAEtSSVCEISSHVCESFFMSPENTQECEQPIRKVY 1040
Cdd:pfam02463 584 IPKLKLPLKS-IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL-KDTELTKLKESAKAKESGLRKGVSLEEGLAEK 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1041 QSLSTAVEGLLDMALDSSKQLEDARQLHRcvEKEFRHRDEEMAQAVQKQQELLERLREESAAKD--RLALELHTAEGLLE 1118
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAESELA--KEEILRRQLEIKKKEQREKEELKKLKLEAEELLadRVQEAQDKINEELK 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1119 GFKVEKAD-LQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRD 1197
Cdd:pfam02463 740 LLKQKIDEeEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1198 QWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQ 1277
Cdd:pfam02463 820 EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK 899
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1278 EIKWLEGQlrqatrprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQQLLIQEEEIKHLEETNENIQRQ 1357
Cdd:pfam02463 900 KELEEESQ------------KLNLLEEKENEIEERIKEEAEILLKYEEE--PEELLLEEADEKEKEENNKEEEEERNKRL 965
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758593 1358 MAQLQEELEKQRRSTEELEVVNSRNSEIEElkaiiehlqenqeQLQKAKAEEIEQLHEVIEKLQ 1421
Cdd:pfam02463 966 LLAKEELGKVNLMAIEEFEEKEERYNKDEL-------------EKERLEEEKKKLIRAIIEETC 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
121-361 |
7.88e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 7.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELallqSRQQCELELMREQHAREKEEMAL---RNE 197
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL----ERQLEELEAQLEELESKLDELAEelaELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 198 QETAELKEKFRS------EMEKTVQMMETLKQDWESErelcLETLRKELsAKHQSEMEGLQNQFQkELSEQKAELEKifQ 271
Cdd:TIGR02168 344 EKLEELKEELESleaeleELEAELEELESRLEELEEQ----LETLRSKV-AQLELQIASLNNEIE-RLEARLERLED--R 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKaQSQEEIRHLWSQLES 351
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQALD-AAERELAQLQARLDS 493
|
250
....*....|
gi 1958758593 352 MKTNREEQNG 361
Cdd:TIGR02168 494 LERLQENLEG 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1052-1285 |
8.68e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 8.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1052 DMALDSSKQLEDARQLhrcvEKEFR--HRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKAdlQE 1129
Cdd:COG4913 215 EYMLEEPDTFEAADAL----VEHFDdlERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFA--QR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1130 ALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKEtftNEAKEREAALQKEVESLTRDqwesRKQSEKDR 1209
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERE----LEERERRR 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758593 1210 ATLLSQMRVLESELEDQLvqhrgcAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF---QQEIKWLEGQ 1285
Cdd:COG4913 362 ARLEALLAALGLPLPASA------EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELrelEAEIASLERR 434
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1031-1397 |
9.68e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1031 ECEQPIRKVYQSLSTA---VEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA 1107
Cdd:PRK02224 325 ELRDRLEECRVAAQAHneeAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1108 LELHTAEGLLEGFKVEK-----------ADLQEALGKKEESEQQL----------------IVE-LEDLRKQLQQASREL 1159
Cdd:PRK02224 405 VDLGNAEDFLEELREERdelrereaeleATLRTARERVEEAEALLeagkcpecgqpvegspHVEtIEEDRERVEELEAEL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1160 LTLKEENSVLWNQKETFTNEAK-EREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLA- 1237
Cdd:PRK02224 485 EDLEEEVEEVEERLERAEDLVEaEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAe 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1238 -------EEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereefqqeikwleGQLRQATRPRppgpRDSQCAKLDEEVE 1310
Cdd:PRK02224 565 eeaeearEEVAELNSKLAELKERIESLERIRTLLAAIADA-------------EDEIERLREK----REALAELNDERRE 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1311 LLQEK------LREKLDG--FNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1382
Cdd:PRK02224 628 RLAEKrerkreLEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRV 707
|
410
....*....|....*
gi 1958758593 1383 SEIEELKAIIEHLQE 1397
Cdd:PRK02224 708 EALEALYDEAEELES 722
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1071-1424 |
1.53e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1071 VEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGK---KEESEQQLIVELED 1147
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknKLLKLELLLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1148 LRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESL--TRDQWESRKQSEKDRATLLSQMRVLESELED 1225
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnqLKDEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1226 QLvqhrgcAQLAEEVTTLKQQ-LATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPP-----GPRD 1299
Cdd:TIGR04523 289 QL------NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNsesenSEKQ 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1300 SQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEE-------EIKHLEETNENIQRQMAQLQEELEKQRRST 1372
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeQIKKLQQEKELLEKEIERLKETIIKNNSEI 442
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 1373 EELE-VVNSRNSEIEELKAIIEHLQENQEQLQKakaeEIEQLHEVIEKLQSEL 1424
Cdd:TIGR04523 443 KDLTnQDSVKELIIKNLDNTRESLETQLKVLSR----SINKIKQNLEQKQKEL 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1045-1423 |
1.69e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1045 TAVEGLLDMALDSSKQLEDarQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREE----SAAKDRLALELHTAEGLLEGF 1120
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKA--QIEEKEEKDLHERLNGLESELAELDEEIERYEEQreqaRETRDEADEVLEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1121 KVEKADLQEALGKKEESEQqlivELEDLRKQLQQASRELLTLKEENSVLWNQKETftnEAKEREAALQKevesltRDQWE 1200
Cdd:PRK02224 254 ETLEAEIEDLRETIAETER----EREELAEEVRDLRERLEELEEERDDLLAEAGL---DDADAEAVEAR------REELE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1201 SRKQSEKDRatlLSQMRVLESELEDQLVQHRGCA-QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereeFQQEI 1279
Cdd:PRK02224 321 DRDEELRDR---LEECRVAAQAHNEEAESLREDAdDLEERAEELREEAAELESELEEAREAVEDRREEIEE----LEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1280 KWLEGQLRQATRPRppgprdsqcakldEEVELLQEKLREKLDGFNELV---------IKKDLADQQLLIQE--------- 1341
Cdd:PRK02224 394 EELRERFGDAPVDL-------------GNAEDFLEELREERDELREREaeleatlrtARERVEEAEALLEAgkcpecgqp 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1342 -EEIKHLEETNENIQRqMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQK----------AKAEEI 1410
Cdd:PRK02224 461 vEGSPHVETIEEDRER-VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEliaerretieEKRERA 539
|
410
....*....|...
gi 1958758593 1411 EQLHEVIEKLQSE 1423
Cdd:PRK02224 540 EELRERAAELEAE 552
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
120-829 |
1.90e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.74 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLngrraQELALLQSRQQCELELMREQHAREKEEMALRNEQE 199
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL-----QQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 200 TAELKEKFRSEMEKtvqmmetlkqdwesERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:TIGR00618 271 ELRAQEAVLEETQE--------------RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 280 LKNLEAQHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQeEIRHLWSQLESMKTNREEQ 359
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQ-SLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 360 NGSWEPL---LAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNdaEKTYQEDlTVFQQRLQEAREESLE 436
Cdd:TIGR00618 416 TSAFRDLqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK--EREQQLQ-TKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 437 SAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSL-IEDYQEKLSNAEEKIELMKQEFQKKEAEWElSREDLKRDA 515
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETSEEDVYHQLTSERKQRASLK-EQMQEIQQS 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 516 EEKLASMFLELREkaeseklsIINRFELRESSMRHLQDQQaaqiSDLERSLR-EQQGHLRQLEQELTRDEVLLC-SQCGK 593
Cdd:TIGR00618 572 FSILTQCDNRSKE--------DIPNLQNITVRLQDLTEKL----SEAEDMLAcEQHALLRKLQPEQDLQDVRLHlQQCSQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 594 EPSVAQDEKSAI---LLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQE--KHSHELQLLQQGHQQQLLAL 668
Cdd:TIGR00618 640 ELALKLTALHALqltLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDRE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 669 RMELETKHHSELTEQLASLESKQQALLE-THVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIrdEHKKALELLR 747
Cdd:TIGR00618 720 FNEIENASSSLGSDLAAREDALNQSLKElMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEI--QFFNRLREED 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 748 AELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTEsgKGPAADLQGAHQQKAPAMALHNEGHQLE 827
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI--THQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
..
gi 1958758593 828 ED 829
Cdd:TIGR00618 876 DK 877
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1050-1452 |
2.31e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1050 LLDMALDS-SKQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQ 1128
Cdd:pfam05483 381 IITMELQKkSSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1129 EALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTrdqwESRKQSEKd 1208
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEER- 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1209 ratLLSQMRVLEseledqlvqhrgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1288
Cdd:pfam05483 532 ---MLKQIENLE-----------------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1289 AtrprppgprDSQCAKLDEEVElLQEKLREKLDGFNELVIKKDLAD-QQLLIQEEEIKHLEETNENIQRQMAQL----QE 1363
Cdd:pfam05483 592 L---------ENKCNNLKKQIE-NKNKNIEELHQENKALKKKGSAEnKQLNAYEIKVNKLELELASAKQKFEEIidnyQK 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1364 ELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQKAKAEEI-----------EQLHEVIEKLQSELSLMGPTVH 1432
Cdd:pfam05483 662 EIEDKKISEEKLL------EEVEKAKAIADEAVKLQKEIDKRCQHKIaemvalmekhkHQYDKIIEERDSELGLYKNKEQ 735
|
410 420
....*....|....*....|
gi 1958758593 1433 EMSDLpPGSLHTELSCLQAE 1452
Cdd:pfam05483 736 EQSSA-KAALEIELSNIKAE 754
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
201-972 |
2.54e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 201 AELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKhqSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSL 280
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 281 KNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESmktNREEQN 360
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD---DEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 361 GSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhlRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEI 440
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 441 SSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEA--EWELSREDLKRDAEEK 518
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQElkLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 519 LASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLE-RSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSV 597
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVgGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 598 AQDEKSAILLR----------------EKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGH 661
Cdd:pfam02463 556 TADEVEERQKLvraltelplgarklrlLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 662 QQQLLALRMELETKHHSELTEQLASLESKQQALLEthvaKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEhKK 741
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE----LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQRE-KE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 742 ALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESgkgpaadlQGAHQQKAPAMALHN 821
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS--------ELSLKEKELAEEREK 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 822 EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRG--E 899
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLeeE 862
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 900 LEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHED 972
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE 935
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1058-1416 |
2.92e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1058 SKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEglLEGFKVEKADLQEALGKKEES 1137
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKE--VKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1138 EQQL-----------------IVELEDLRKQLQQASRELLTL------KEENSVLWNQKETFTNEAKEREAALQKEVESL 1194
Cdd:TIGR00606 524 MEQLnhhtttrtqmemltkdkMDKDEQIRKIKSRHSDELTSLlgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1195 TRDQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAE 1267
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1268 RE------HEREEFQQEIKWLEGQLRQATRPRPpgprdsqcakldEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQE 1341
Cdd:TIGR00606 676 NQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758593 1342 EEIKHLEETNENIQRQMAQLQEELEKQRRsteELEVVNSRNSEIEELK---AIIEHLQENQEQLQKAKAEEIEQLHEV 1416
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQET---LLGTIMPEEESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS 818
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
178-965 |
3.00e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 178 LELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKElsakHQSEmEGLQNQFQK 257
Cdd:pfam15921 76 IERVLEEYSHQVKDLQ-RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE----SQSQ-EDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 258 ELseqkaelekifqakHEAEvslknleaqhqaAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELETLQASYEDLKAQ 337
Cdd:pfam15921 150 TV--------------HELE------------AAKCLKEDMLEDSNTQIEQL----RKMMLSHEGVLQEIRSILVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 338 SQEEIRhlwsQLESMKTNREEQNGSwepllAQASHLEELqhlrsdfaqqqqqeraqhESELEHL--RVY-FEKKLNDAEK 414
Cdd:pfam15921 200 SGKKIY----EHDSMSTMHFRSLGS-----AISKILREL------------------DTEISYLkgRIFpVEDQLEALKS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 415 TYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEP-PDPLDLQLEQPKAQGSLiedYQEKLSNAEEKIELM 493
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSiQSQLEIIQEQARNQNSM---YMRQLSDLESTVSQL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 494 KQEFQKKEAEWELSREDLkrdaEEKLASMFLELRE-KAESEKLSiinrfelRESSmrHLQDQQAAQISDL-----ERSLR 567
Cdd:pfam15921 330 RSELREAKRMYEDKIEEL----EKQLVLANSELTEaRTERDQFS-------QESG--NLDDQLQKLLADLhkrekELSLE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 568 EQQG---------------HLRQ----LEQELTRDEVLLCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQnrfLEER 628
Cdd:pfam15921 397 KEQNkrlwdrdtgnsitidHLRRelddRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ---LEST 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 629 KEIMEKFAKEQDAflldtqekhshelqllqqghqqqllaLRMELETKHHSeLTEQLASLESKQQALLETHVAKMQVKHDA 708
Cdd:pfam15921 474 KEMLRKVVEELTA--------------------------KKMTLESSERT-VSDLTASLQEKERAIEATNAEITKLRSRV 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 709 EISALEKRHLSNldelescyvadiqtiRDEHKKALELLRAELEEQLQKKDSChREILTQELEKLklkhaeelqsvrnslr 788
Cdd:pfam15921 527 DLKLQELQHLKN---------------EGDHLRNVQTECEALKLQMAEKDKV-IEILRQQIENM---------------- 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 789 vkmsaqhtesgkgpaADLQGAHQQKAPAMALhnEGHQLEED-GDAALGGADTEDLQHHAEPREREgphtVEMQTSQTELA 867
Cdd:pfam15921 575 ---------------TQLVGQHGRTAGAMQV--EKAQLEKEiNDRRLELQEFKILKDKKDAKIRE----LEARVSDLELE 633
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 868 KPQELQASQDQGAQVRD---QVFLLSRELEECRGELEQLQQRRE-------RENQEGATLICMLRADVDLAQSEGKALRD 937
Cdd:pfam15921 634 KVKLVNAGSERLRAVKDikqERDQLLNEVKTSRNELNSLSEDYEvlkrnfrNKSEEMETTTNKLKMQLKSAQSELEQTRN 713
|
810 820
....*....|....*....|....*...
gi 1958758593 938 ALRRLLDLFGETLKAAVTLKSRISERAG 965
Cdd:pfam15921 714 TLKSMEGSDGHAMKVAMGMQKQITAKRG 741
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1066-1400 |
3.24e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1066 QLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEES---EQQLI 1142
Cdd:pfam17380 292 KFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELErirQEEIA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1143 VELEDLRkqlqQASRELLTLKEENSVLWNQKETfTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATllsQMRVLESE 1222
Cdd:pfam17380 372 MEISRMR----ELERLQMERQQKNERVRQELEA-ARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR---EVRRLEEE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1223 LEDQLVQHRgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgprdsqc 1302
Cdd:pfam17380 444 RAREMERVR------LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQ----------- 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1303 akldeevELLQEKLREKLdgfnelvIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1382
Cdd:pfam17380 507 -------AMIEEERKRKL-------LEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAME 572
|
330
....*....|....*...
gi 1958758593 1383 SEIEELKAIIEHLQENQE 1400
Cdd:pfam17380 573 REREMMRQIVESEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1065-1502 |
3.60e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1065 RQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEESEQ-- 1139
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAelqEELEELEEELEELEAELEELREELEKLEKLLQll 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1140 QLIVELEDLRKQLQQASRELLTLKEENSV---LWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQM 1216
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEElreLEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1217 RVLESELEdqlvqhrgcaQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPG 1296
Cdd:COG4717 209 AELEEELE----------EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1297 PRDSQCAKLDEEVELLQEK--LREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEE 1374
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKasLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1375 LEVVNSRNSEIEELKAIIEHLQ-ENQEQLQKA--KAEEIEQLHEVIEKLQSELSLMGPTVHE-MSDLPPGSLHTELSCLQ 1450
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGvEDEEELRAAleQAEEYQELKEELEELEEQLEELLGELEElLEALDEEELEEELEELE 438
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1958758593 1451 AEgmgGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAAR 1502
Cdd:COG4717 439 EE---LEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRE 487
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
234-534 |
3.86e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.24 E-value: 3.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKaelekifqaKHEAEVSLKNLEAQHQAAIRKlQEDLRSEHCQYLQDLELRF 313
Cdd:NF033838 109 EKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVAEATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEI 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 314 REKE-KAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKtnreeqngswepllAQASHLEELQHLRsdfaqqqqqERA 392
Cdd:NF033838 179 AESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK--------------AEATRLEKIKTDR---------EKA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 393 QHESEL---EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETsgrerkePPDPlDLQLEQP 469
Cdd:NF033838 234 EEEAKRradAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEET-------LPSP-SLKPEKK 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 470 KAQGS-LIEDYQEKLSNAEEK--------------IELMKQEFQKKEAEWELSREDLKRDA-EEKLAsmflELREKAESE 533
Cdd:NF033838 306 VAEAEkKVEEAKKKAKDQKEEdrrnyptntyktleLEIAESDVKVKEAELELVKEEAKEPRnEEKIK----QAKAKVESK 381
|
.
gi 1958758593 534 K 534
Cdd:NF033838 382 K 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1329-1551 |
3.89e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1329 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKA 1407
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1408 EEIEQLHEVIEKLQselsLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLladhghSQALE 1487
Cdd:COG4942 101 AQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758593 1488 ALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNK 1551
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1117-1422 |
3.95e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1117 LEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEakerEAALQKEVESLTR 1196
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ----DSVKELIIKNLDN 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1197 dqweSRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQQLatldKHLRSQRQFMDEQAAEREHEREEFQ 1276
Cdd:TIGR04523 462 ----TRESLETQLKVLSRSINKIKQNLE----------QKQKELKSKEKEL----KKLNEEKKELEEKVKDLTKKISSLK 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1277 QEIKWLEgqlrqatrprppgprdSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQlliqeEEIKHLEETNENIQR 1356
Cdd:TIGR04523 524 EKIEKLE----------------SEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKN-----KEIEELKQTQKSLKK 582
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 1357 QMAQLQEELEKQRRSTEELevvnsrNSEIEELKAIIEHLqenQEQLQKAKAEEiEQLHEVIEKLQS 1422
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDL------IKEIEEKEKKISSL---EKELEKAKKEN-EKLSSIIKNIKS 638
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2076-2551 |
4.08e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2076 LVKKLEKVIQEQGDLQKVREHAclpDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 2155
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2156 AYKVEQEKCIANDLQKTLSKEQEA------ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRlrygh 2229
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK----- 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2230 vtwsysgtSSASAGRAVLDGKENELKVVLEElecERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNnq 2309
Cdd:PTZ00121 1472 --------ADEAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE-- 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2310 lcvALKHERAAKDNLQKELQiEASRCEALLAQEKGQLSELRKSL---EAERSRSLELSEALQHERLLTEQLSRNAQEACA 2386
Cdd:PTZ00121 1539 ---AKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2387 RQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCC 2466
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2467 LEREREKAAWLQAELEQLSARVKQQEARQDEK----RMDRRSSREDLDKRKwqrvKEKLRELELQRQRDEHKIEQLQRLV 2542
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
....*....
gi 1958758593 2543 RELRWKEEA 2551
Cdd:PTZ00121 1771 EEIRKEKEA 1779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2281-2551 |
4.25e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2281 RHLQRegQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAER 2357
Cdd:COG1196 203 EPLER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELeaeLAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2358 srsLELSEALQHERLLTEQLSRnaqeacarqdtqaqhaLLRKLKAEKARALELEAMLEKvqkqaahtqqqleaQAqercL 2437
Cdd:COG1196 281 ---LELEEAQAEEYELLAELAR----------------LEQDIARLEERRRELEERLEE--------------LE----E 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2438 ELRREKEvsgnlrsavdALQTHKQElgccLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDkRKWQRV 2517
Cdd:COG1196 324 ELAELEE----------ELEELEEE----LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-ELAEEL 388
|
250 260 270
....*....|....*....|....*....|....
gi 1958758593 2518 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2551
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
168-507 |
4.71e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 168 ALLQSRQQCELELMREQHAR-EKEEMA--LRNEQETAELKEKFRSEMEKTVQM-METLKQDWESERELclETLRKElsaK 243
Cdd:pfam17380 283 AVSERQQQEKFEKMEQERLRqEKEEKAreVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL--ERIRQE---E 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 244 HQSEMEGLQNQFQKELSEQKAELEKI-FQAKHEAEVSLKNLEAQHQAAIrkLQEDLRSEHCQYLQDLELRFREKEKAKEL 322
Cdd:pfam17380 358 RKRELERIRQEEIAMEISRMRELERLqMERQQKNERVRQELEAARKVKI--LEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 323 ELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLR 402
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 403 VYFEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgRERKeppdpldlqleQPKAQGSLIEDYQEK 482
Cdd:pfam17380 516 KLLEKEMEERQKAIYE-----EERRREAEEERRKQQEM------------EERR-----------RIQEQMRKATEERSR 567
|
330 340
....*....|....*....|....*..
gi 1958758593 483 LSNAEEKIELMKQ--EFQKKEAEWELS 507
Cdd:pfam17380 568 LEAMEREREMMRQivESEKARAEYEAT 594
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
121-357 |
7.37e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 7.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTEL---REMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNE 197
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 198 QETAELKEKFRSEMEKTVQmMETLKQDwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAE--LEKIFQAKHE 275
Cdd:pfam17380 429 QEEARQREVRRLEEERARE-MERVRLE-EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkiLEKELEERKQ 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 276 AEVSLKNLEaqhqaaiRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTN 355
Cdd:pfam17380 507 AMIEEERKR-------KLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER-----SRLEAMERE 574
|
..
gi 1958758593 356 RE 357
Cdd:pfam17380 575 RE 576
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
128-563 |
9.29e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 9.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 128 SLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKF 207
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQ-LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 208 RSEMEKTVQMMETLKQDWESERElcletlRKELSAKHQSEMEGLQNQFQKELSEqkaelekifqAKHEAEVSLKNLEAQH 287
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARN------QNSMYMRQLSDLESTVSQLRSELRE----------AKRMYEDKIEELEKQL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 288 QAAIRKLQEdLRSEHCQY----------LQDLELRFREKEKAKELELETLQASYeDLKAQSQEEIRHLWSQLES------ 351
Cdd:pfam15921 352 VLANSELTE-ARTERDQFsqesgnlddqLQKLLADLHKREKELSLEKEQNKRLW-DRDTGNSITIDHLRRELDDrnmevq 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 352 -----MKTNREEQNGSWEPLLAQASHLEELQHLRSDFAqqqqqerAQHESELEHLRVYFEK------KLNDAEKTYQeDL 420
Cdd:pfam15921 430 rlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLT-------AQLESTKEMLRKVVEEltakkmTLESSERTVS-DL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 421 TVFQQRLQEAREESleSAEIssscmfpeeTSGRERkeppdpLDLQLEQPKAqgslIEDYQEKLSNAEEKIELMKQEFQKK 500
Cdd:pfam15921 502 TASLQEKERAIEAT--NAEI---------TKLRSR------VDLKLQELQH----LKNEGDHLRNVQTECEALKLQMAEK 560
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 501 EAEWELSR---EDLKRDAEEKLASMFLELREKAESEKLSIINRFELREssMRHLQDQQAAQISDLE 563
Cdd:pfam15921 561 DKVIEILRqqiENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE--FKILKDKKDAKIRELE 624
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
508-1159 |
1.06e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 508 REDLKRDAEekLASMFLELREKAE----SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRD 583
Cdd:COG1196 202 LEPLERQAE--KAERYRELKEELKeleaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 584 EVLLcsqcgkepsVAQDEKSAILLREKEDC--ALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKhshelqllqqgh 661
Cdd:COG1196 280 ELEL---------EEAQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEE------------ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 662 qqqLLALRMELEtkhhsELTEQLASLESKQQALLEthvakmqvkhdaEISALEKRHLSNLDELESCYVADIQTIRDEHKK 741
Cdd:COG1196 339 ---LEELEEELE-----EAEEELEEAEAELAEAEE------------ALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 742 ALELLRAELEEQLQKKDschREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTEsgkgpAADLQGAHQQKAPAMALHN 821
Cdd:COG1196 399 AAQLEELEEAEEALLER---LERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-----AELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 822 EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHtvEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELE 901
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYE--GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 902 QLQQRRERENQEGAtlicmlrADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQL 981
Cdd:COG1196 549 QNIVVEDDEVAAAA-------IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 982 AAAALGEMWPDEGLLDIDRTLPEGAETSSvceisshvcesffmspentqeceQPIRKVYQSLSTAVEGLLDMALDSSKQL 1061
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVT-----------------------LEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1062 EDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQL 1141
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
650
....*....|....*...
gi 1958758593 1142 IVELEDLRKQLQQASREL 1159
Cdd:COG1196 759 PPDLEELERELERLEREI 776
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
146-542 |
1.10e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 146 KEKETALTELREMLNG--RRAQELALLQSR-QQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLK 222
Cdd:PRK03918 210 NEISSELPELREELEKleKEVKELEELKEEiEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 223 QDWESEREL--CLETLRKELS------AKHQSEMEGLQNQFqKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQA--AIR 292
Cdd:PRK03918 290 EKAEEYIKLseFYEEYLDELReiekrlSRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELyeEAK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 293 KLQEDLRsehcqylqdlelrfREKEKAKELELETLQASYEDL---KAQSQEEIRHLWSQLESMKTNREEQNGSwepllaq 369
Cdd:PRK03918 369 AKKEELE--------------RLKKRLTGLTPEKLEKELEELekaKEEIEEEISKITARIGELKKEIKELKKA------- 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 370 ashLEELQHLRSDFAQQQQQERAQHESELehLRVYfEKKLNDAEKTYQEdltvFQQRLQEAREE--SLESAEISSSCMFP 447
Cdd:PRK03918 428 ---IEELKKAKGKCPVCGRELTEEHRKEL--LEEY-TAELKRIEKELKE----IEEKERKLRKElrELEKVLKKESELIK 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 448 EETSGRERKEppdpldlqleqpkAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKR--DAEEKLASMFLE 525
Cdd:PRK03918 498 LKELAEQLKE-------------LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKleELKKKLAELEKK 564
|
410
....*....|....*..
gi 1958758593 526 LREkAESEKLSIINRFE 542
Cdd:PRK03918 565 LDE-LEEELAELLKELE 580
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1120-1539 |
1.19e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1120 FKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRElltlkeensvlwnqketftNEAKEREAALQKEVESltRDQW 1199
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE-------------------REKAERYQALLKEKRE--YEGY 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1200 E---SRKQSEKDRATLLSQMRVLESELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHLRSQRQfmDEQAAerehereeFQ 1276
Cdd:TIGR02169 227 EllkEKEALERQKEAIERQLASLEEELEKLTEE---ISELEKRLEEIEQLLEELNKKIKDLGE--EEQLR--------VK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1277 QEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEKLREkldgfnelvikkdlADQQLLIQEEEIKHLEETNENIQR 1356
Cdd:TIGR02169 294 EKIGELEAEIASL---------ERSIAEKERELEDAEERLAK--------------LEAEIDKLLAEIEELEREIEEERK 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1357 QMAQLQEELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSELSLMGPTVHEmsd 1436
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLR------AELEEVDKEFAETRDELKDYR----EKLEKLKREINELKRELDRLQEELQR--- 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1437 lppgsLHTELSCLQAEGMGGQALHNELQAAQAAKGA--------FGQLLADHG-HSQALEALQERLQDAEaaaaRHLTEL 1507
Cdd:TIGR02169 418 -----LSEELADLNAAIAGIEAKINELEEEKEDKALeikkqewkLEQLAADLSkYEQELYDLKEEYDRVE----KELSKL 488
|
410 420 430
....*....|....*....|....*....|..
gi 1958758593 1508 EHCVALRQAEVEAMASRIQEFEATLKAKEAII 1539
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1121-1425 |
1.20e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1121 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNE----AKEREAALQKEVESLTR 1196
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlNNQKEQDWNKELKSELK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1197 DQWESRKQSEKDratlLSQMRVLESELEDQLvqhrgcAQLAEEVTTLKQQLATLDKHLR---SQRQFMDEQAAEREHERE 1273
Cdd:TIGR04523 318 NQEKKLEEIQNQ----ISQNNKIISQLNEQI------SQLKKELTNSESENSEKQRELEekqNEIEKLKKENQSYKQEIK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1274 EFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQ---EKLREKLDGFNELVIK-----KDLADQQLlIQEEEIK 1345
Cdd:TIGR04523 388 NLESQINDLESKIQNQ---------EKLNQQKDEQIKKLQqekELLEKEIERLKETIIKnnseiKDLTNQDS-VKELIIK 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1346 HLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSRNSEIEELKAIIEHLQENQEQLQKAKAE---EIEQLHEVIEKLQ 1421
Cdd:TIGR04523 458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKeLKSKEKELKKLNEEKKELEEKVKDLTKKISSlkeKIEKLESEKKEKE 537
|
....
gi 1958758593 1422 SELS 1425
Cdd:TIGR04523 538 SKIS 541
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2285-2551 |
1.32e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2285 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEaERSRSLELS 2364
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-EAKKADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2365 EALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE 2444
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2445 VSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARvKQQEARQ--DEKRMDRRSSREDLDKRKWQRVKEKLR 2522
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK-KADEAKKkaEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
250 260 270
....*....|....*....|....*....|.
gi 1958758593 2523 ElelQRQRDE--HKIEQLQRLVRELRWKEEA 2551
Cdd:PTZ00121 1481 E---AKKADEakKKAEEAKKKADEAKKAAEA 1508
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1097-1427 |
1.64e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1097 REESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEE------SEQQLIVELEDLRKQLQQASRELLTLKEENS 1167
Cdd:TIGR00606 584 KEINQTRDRLAklnKELASLEQNKNHINNELESKEEQLSSYEDklfdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATA 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1168 VLWNQKETFTNEAK------EREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAE--- 1238
Cdd:TIGR00606 664 VYSQFITQLTDENQsccpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDlke 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1239 -EVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQE---------IKWLEGQLRQATRPRPPGPRDSQCAKLDEE 1308
Cdd:TIGR00606 744 kEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdvtiMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1309 VELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV----VNSRNSE 1384
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVElsteVQSLIRE 903
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958758593 1385 IEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSLM 1427
Cdd:TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
679-1250 |
1.71e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 679 ELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCyVADIQTIRDEHKKALELLRAELEEQLQKKD 758
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEL-EAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 759 SCHREILTQELEKLKLKHAEE-LQSVRNSLRVKmsaqhtesgkgpAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGA 837
Cdd:COG1196 296 ELARLEQDIARLEERRRELEErLEELEEELAEL------------EEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 838 DTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATL 917
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 918 ICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT----SGAQLAAAALGEMWPDE 993
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegfLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 994 GLLDIDRTLPEGAETSSVCEISSHVCESFFmspENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRcVEK 1073
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQNIVV---EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA-IGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1074 EFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQ 1153
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1154 QASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRVLESELEDQLVQHRGC 1233
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE-ALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
570 580
....*....|....*....|.
gi 1958758593 1234 ----AQLAEEVTTLKQQLATL 1250
Cdd:COG1196 759 ppdlEELERELERLEREIEAL 779
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2308-2551 |
1.87e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2308 NQLCVALKHERAAKDNLQKElQIEASRCEALLAQEKGQLSEL---RKSLEAERSRSLELSEAL----QHERLLTE---QL 2377
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVerrRKLEEAEKARQAEMDRQAaiyaEQERMAMErerEL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2378 SRNAQEACARQDTQAQHallRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAV---- 2453
Cdd:pfam17380 351 ERIRQEERKRELERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEqira 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2454 ---DALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQR 2530
Cdd:pfam17380 428 eqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260
....*....|....*....|.
gi 1958758593 2531 DEHKIEQLQRLVRELRWKEEA 2551
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKA 528
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1333-1548 |
2.06e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1333 ADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVvnsrnsEIEELKAIIEHLQENQEQLQKAKAEEIEQ 1412
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQA------ELEALQAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1413 LHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGhsQALEALQER 1492
Cdd:COG3883 88 LGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL--AELEALKAE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 1493 LQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDA 1548
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2251-2551 |
2.08e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2251 ENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ-LCVALKHERAAKDNLQKELQ 2329
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKrVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2330 iEASRCE-ALLAQEKGQLSELRKsleAERSRSLELSEALQHERLLTEqlSRNAQEAcaRQDTQAQHALLRKLKAEKARAL 2408
Cdd:PTZ00121 1174 -DAKKAEaARKAEEVRKAEELRK---AEDARKAEAARKAEEERKAEE--ARKAEDA--KKAEAVKKAEEAKKDAEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2409 ELEAMLEKVQK-QAAHTQQQLEAQAQERCLELRREKEV--SGNLRSAVDALQTHKQELGCCLEREREKA-----AWLQAE 2480
Cdd:PTZ00121 1246 EEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELkkAEEKKKADEAKKAEEKKKADEAKKKAEEAkkadeAKKKAE 1325
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758593 2481 LEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2551
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1089-1423 |
2.12e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1089 QQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSV 1168
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1169 LWNQKE--------------TFTNEAKEREAAL------QKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELED--- 1225
Cdd:pfam07888 120 LLAQRAahearireleedikTLTQRVLERETELermkerAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQElrn 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1226 -QLVQHRGCAQLAEEVTTLKQQLATLDKHlRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAK 1304
Cdd:pfam07888 200 sLAQRDTQVLQLQDTITTLTQKLTTAHRK-EAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1305 LdeEVELLQEKLREKldgfnELVIKKDLA----DQQLLIQEEEIKH--LEETNENIQRQMAQLQEE-LEKQRRSTE---- 1373
Cdd:pfam07888 279 L--QAAQLTLQLADA-----SLALREGRArwaqERETLQQSAEADKdrIEKLSAELQRLEERLQEErMEREKLEVElgre 351
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 1374 ---ELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:pfam07888 352 kdcNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1305-1423 |
2.66e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1305 LDEEVELLQEKLREKLDGFNELVIKKDLADQQLLiqEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-------- 1376
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE--EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLErelsears 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 1377 ----------VVNSRNSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSE 1423
Cdd:COG2433 456 eerreirkdrEISRLDREIERLERELEEERERIEELK----RKLERLKELWKLEHSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1329-1508 |
2.90e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1329 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV---VNSRNSEIEELKAIIEHLQEN------- 1398
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDeidVASAEREIAELEAELERLDASsddlaal 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1399 QEQLQKAKAeEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPgSLHTELSclQAEGMGGQALHNELQAaqaakgAFGQLLA 1478
Cdd:COG4913 691 EEQLEELEA-ELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLE--AAEDLARLELRALLEE------RFAAALG 760
|
170 180 190
....*....|....*....|....*....|
gi 1958758593 1479 DHGHSQALEALQERLQDAEAAAARHLTELE 1508
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2107-2393 |
3.80e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2107 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAA 2180
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2181 SDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEvlrlryghvtwsysgtssASAGRAVLDGKENELKVVLEE 2260
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE------------------LKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2261 LEcERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELqieasrcEALLA 2340
Cdd:TIGR02168 819 AA-NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL-------EEALA 890
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 2341 QEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQ 2393
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1027-1426 |
3.89e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1027 ENTQECEQPIRKVYQSLSTAVEGLLDM--ALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKD 1104
Cdd:TIGR00618 438 RYAELCAAAITCTAQCEKLEKIHLQESaqSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1105 RLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLkeenSVLWNQKETFTNEAKERE 1184
Cdd:TIGR00618 518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL----TQCDNRSKEDIPNLQNIT 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1185 AALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRgcaqLAEEVTTLKQQLATLDK-----HLRSQRQ 1259
Cdd:TIGR00618 594 VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQE----LALKLTALHALQLTLTQervreHALSIRV 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1260 FMDEQAAERehereefQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKldgfnelvIKKDLADQQLLI 1339
Cdd:TIGR00618 670 LPKELLASR-------QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE--------IENASSSLGSDL 734
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1340 QEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEK 1419
Cdd:TIGR00618 735 AAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPS 814
|
....*..
gi 1958758593 1420 LQSELSL 1426
Cdd:TIGR00618 815 DEDILNL 821
|
|
| CorA |
pfam01544 |
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx ... |
1276-1425 |
4.08e-04 |
|
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.
Pssm-ID: 460246 [Multi-domain] Cd Length: 292 Bit Score: 45.00 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1276 QQEIKWLEgQLRQATRPRPPGPRDSQcakldeevELLQEKLREKLDGFNELVikkDLADQQLLIQEEEIkhLEETNENIQ 1355
Cdd:pfam01544 85 HEPLPALD-EVRKRLTLLGGGPLDPG--------DLLYRLLDEIVDRFLELL---EKLEDELDELEDEL--EDETNNELL 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 1356 RQMAQLQEELEK-------QRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELS 1425
Cdd:pfam01544 151 RELAALRRSLVYlrrsllpQRDVLNRLLRREDDPLLDDEQKEYLRDLLDRLERL----LEDLDALRERLRSLQDEYS 223
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
188-913 |
5.05e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 188 EKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELsakhqseMEGLQNQFQKELSEQKAELE 267
Cdd:TIGR00618 153 EFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQL-------LTLCTPCMPDTYHERKQVLE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 268 KIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEH-CQYLQDLELRFREKEKAKELELETLQASYEDLK--------AQS 338
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQlLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavTQI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 339 QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhLRVYFEKKLNDAE--KTY 416
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS-IREISCQQHTLTQhiHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 417 QEDLTVFQQRLQEAREESLesaeissscmfpeetsgRERKEPPDPLDLQLEQPKAQGSLIedYQEKLSNAEEKIELMKQE 496
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELD-----------------ILQREQATIDTRTSAFRDLQGQLA--HAKKQQELQQRYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 497 FQKKEAEWELSREDLKRDAEEKLasmflelreKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSL---------KEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPA 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 577 EQELTRDEVLLCSQCGKEPSVAQDEKS--------------AILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAF 642
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSeedvyhqltserkqRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 643 LLDTQEKHSHELQLLQQGHQQQLlalrmELETKHHSELTEQLASLESKQQALLETHVAKMQV---KHDAEISALekrhLS 719
Cdd:TIGR00618 597 QDLTEKLSEAEDMLACEQHALLR-----KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltQERVREHAL----SI 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 720 NLDELESCYVADIQTIRDEHKKALELLRAELeeqLQKKDSCHREILTQELEKLKlkHAEELQSVRNSLRVKMSAQ---HT 796
Cdd:TIGR00618 668 RVLPKELLASRQLALQKMQSEKEQLTYWKEM---LAQCQTLLRELETHIEEYDR--EFNEIENASSSLGSDLAARedaLN 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 797 ESGKGPAADLQGAHQQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGP-HTVEMQTSQTELAKPQELQAS 875
Cdd:TIGR00618 743 QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLlKTLEAEIGQEIPSDEDILNLQ 822
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1958758593 876 QDQGAQVRDQVFLLSRE--------------LEECRGELEQLQQRRERENQE 913
Cdd:TIGR00618 823 CETLVQEEEQFLSRLEEksatlgeithqllkYEECSKQLAQLTQEQAKIIQL 874
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1128-1420 |
5.36e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.72 E-value: 5.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1128 QEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWN----QKETFTNEAKEREAALQKEVESLTRDQWEsrk 1203
Cdd:COG5185 267 LEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAteslEEQLAAAEAEQELEESKRETETGIQNLTA--- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1204 QSEKDRATLLSQMRVLESELEdQLVQHRGCAQLAEEVTTLKQQLATLDKHL----RSQRQFMDEQAAEREHEREEFQQEI 1279
Cdd:COG5185 344 EIEQGQESLTENLEAIKEEIE-NIVGEVELSKSSEELDSFKDTIESTKESLdeipQNQRGYAQEILATLEDTLKAADRQI 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1280 KWLEGQLRQATRPRPPGPRdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIkhLEETNENIQRQMA 1359
Cdd:COG5185 423 EELQRQIEQATSSNEEVSK-----LLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKED--LNEELTQIESRVS 495
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758593 1360 QLQEELEKQRRSTEelEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKL 1420
Cdd:COG5185 496 TLKATLEKLRAKLE--RQLEGVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQAS 554
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2285-2539 |
7.70e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2285 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEALLAQEKGQLSELRKSLEAERSRSL 2361
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2362 ELSEALQH--ERLLTEQLSRNAQEA-CARQDTQAQHALLRKLKAE----KARALELEAMLEKVQkqaahtqqqleaqaqe 2434
Cdd:TIGR02169 762 ELEARIEEleEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEvsriEARLREIEQKLNRLT---------------- 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2435 rcLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKrkw 2514
Cdd:TIGR02169 826 --LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE--- 900
|
250 260
....*....|....*....|....*
gi 1958758593 2515 qrVKEKLRELELQRQRDEHKIEQLQ 2539
Cdd:TIGR02169 901 --LERKIEELEAQIEKKRKRLSELK 923
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-688 |
7.91e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 224 DWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE--DLRSE 301
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEleTLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 302 HCQYLQDLELRFREKEKAKElELETLQASYEDLkaqsQEEIRHLWSQLESMKTNREeqngswepllAQASHLEELQhlrs 381
Cdd:PRK02224 260 IEDLRETIAETEREREELAE-EVRDLRERLEEL----EEERDDLLAEAGLDDADAE----------AVEARREELE---- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 382 dfaqqqqQERAQHESELEHLRVYFEKKLNDAEkTYQEDLTVFQQRLQEAREESLESAEISSSCmfpeETSGRERKEPPDP 461
Cdd:PRK02224 321 -------DRDEELRDRLEECRVAAQAHNEEAE-SLREDADDLEERAEELREEAAELESELEEA----REAVEDRREEIEE 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 462 LDLQLEQPKAQgslIEDYQEKLSNAEEKIELM---KQEFQKKEAEWELSREDLKRDAEEklASMFLELREKAESEKlsii 538
Cdd:PRK02224 389 LEEEIEELRER---FGDAPVDLGNAEDFLEELreeRDELREREAELEATLRTARERVEE--AEALLEAGKCPECGQ---- 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 539 nrfELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLlcsqcgkepsvAQDEKSAILLREKEDCALQLL 618
Cdd:PRK02224 460 ---PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-----------VEAEDRIERLEERREDLEELI 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 619 TAQNRFLEERKEIMEKFAKEQDAflLDTQEKHSHELQLLQQGHQQQLLALRMELETKhHSELTEQLASLE 688
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAE--LEAEAEEKREAAAEAEEEAEEAREEVAELNSK-LAELKERIESLE 592
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1056-1550 |
8.37e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 8.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1056 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1135
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1136 ESEQQLIVELEDLRKQLQQASRELLTLKEEnsvLWNQKETFtNEAKEREAALQKEVESL--TRDQWESRKQSEKDRATLL 1213
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQE---LYDLKEEY-DRVEKELSKLQRELAEAeaQARASEERVRGGRAVEEVL 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1214 SQMRVLESELEDQLVQHRGCAQLAEEVT--------------TLKQQLATLDKHLRSQRQFM------DEQAAEREHERE 1273
Cdd:TIGR02169 517 KASIQGVHGTVAQLGSVGERYATAIEVAagnrlnnvvveddaVAKEAIELLKRRKAGRATFLplnkmrDERRDLSILSED 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1274 --------------EFQQEIKW----------------LEGQLRQATRP--------------RPPGPRDSQCAKLDEEV 1309
Cdd:TIGR02169 597 gvigfavdlvefdpKYEPAFKYvfgdtlvvedieaarrLMGKYRMVTLEgelfeksgamtggsRAPRGGILFSRSEPAEL 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1310 ELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSRNSEIEEL 1388
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEdLSSLEQEIENV 756
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1389 KAIIEHLQENQEQLQKAKAEEIEQL--------HEVIEKLQSELSLMGPTVHEMS------DLPPGSLHTELSCLQAEGM 1454
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALndlearlsHSRIPEIQAELSKLEEEVSRIEarlreiEQKLNRLTLEKEYLEKEIQ 836
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1455 GGQALHNELQAAQAAKGAfgQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKA 1534
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
570
....*....|....*.
gi 1958758593 1535 KEAIIVQRDLEIDAVN 1550
Cdd:TIGR02169 915 KRKRLSELKAKLEALE 930
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2281-2546 |
1.01e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2281 RHLQREGQSSRALEELKISLEKQlaqnnQLCVALKHERAAkdnlqkELQIEASRCEALLAQEKGQLSELRKSLEAERSRS 2360
Cdd:PRK04863 345 RQQEKIERYQADLEELEERLEEQ-----NEVVEEADEQQE------ENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2361 LELSEALQ----------------------------HERLLTEQLSRNAQEACARQDTQAQHA----LLRKLKAEKAR-- 2406
Cdd:PRK04863 414 IQYQQAVQalerakqlcglpdltadnaedwleefqaKEQEATEELLSLEQKLSVAQAAHSQFEqayqLVRKIAGEVSRse 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2407 ----ALELEAMLEKVQKQAAHTQQQLEAQAqerclELRREKEvsgNLRSAVDALQTHKQELGCCLEREREKAAwLQAELE 2482
Cdd:PRK04863 494 awdvARELLRRLREQRHLAEQLQQLRMRLS-----ELEQRLR---QQQRAERLLAEFCKRLGKNLDDEDELEQ-LQEELE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2483 QLSARVKQQEARQDEKRMDRRSSREDLDKR---------KWQRVKEKLRELELQ-------RQRDEHKIEQLQRLVRELR 2546
Cdd:PRK04863 565 ARLESLSESVSEARERRMALRQQLEQLQARiqrlaarapAWLAAQDALARLREQsgeefedSQDVTEYMQQLLERERELT 644
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1121-1375 |
1.02e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1121 KVEKADLQEAL---GKKEESEQqlivELEDLRKQLQQASRELLTLKEEnsvLWNQKETFTNEAKEREAAL-QKEVESLTR 1196
Cdd:PRK11281 59 KLVQQDLEQTLallDKIDRQKE----ETEQLKQQLAQAPAKLRQAQAE---LEALKDDNDEETRETLSTLsLRQLESRLA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1197 DQWESRKQSEKDRATLLSQMRVLESELEdqlvqhRGCAQLAEEVTTLkQQLATLDKHLRsqrqfmDEQAAEREHEREEFQ 1276
Cdd:PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPE------RAQAALYANSQRL-QQIRNLLKGGK------VGGKALRPSQRVLLQ 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1277 QEIKWLEGQLRQATrprppgprdsqcaKLDEEVELLQEKLREKLDgfnELVIKKDLADQQLLIQEEEI--KHLEETneni 1354
Cdd:PRK11281 199 AEQALLNAQNDLQR-------------KSLEGNTQLQDLLQKQRD---YLTARIQRLEHQLQLLQEAInsKRLTLS---- 258
|
250 260
....*....|....*....|.
gi 1958758593 1355 QRQMAQLQEELEKQRRSTEEL 1375
Cdd:PRK11281 259 EKTVQEAQSQDEAARIQANPL 279
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2050-2422 |
1.15e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2050 EVFAREQENAELQPRPYSSDLGDYNSLVKKLEKVIQEQGDLQKVREHAcLPDRSSLLAEIQALRAQLRMTHLQNQekLQQ 2129
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAE--LAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2130 LCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENT 2209
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2210 NLLESLDKVQQEVLRLRYGHVTWSYSGTSSASAGRAVLDGKENELK------------------VVLEELECERGKGQVL 2271
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLsliltiagvlflvlgllaLLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2272 QAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQL---CVALKHERAAKDNLQKELQIEAS--RCEALLAQEK-GQ 2345
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELldrIEELQELLREAEELEEELQLEELeqEIAALLAEAGvED 383
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 2346 LSELRKSLEAERsrslELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAA 2422
Cdd:COG4717 384 EEELRAALEQAE----EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELA 456
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1309-1532 |
1.29e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1309 VELLQEKLREKLDGFNELVIKKDLAD---------QQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVn 1379
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDlherlngleSELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETL- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1380 srNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELSLMGPTVhEMSDLPPGSLHTELSCLQAEgmgGQAL 1459
Cdd:PRK02224 257 --EAEIEDLRETIAETEREREEL----AEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARREELEDR---DEEL 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 1460 HNELQAAQAAKGAFGQLLadHGHSQALEALQERLQDAEAAAARHLTELEHC---VALRQAEVEAMASRIQEFEATL 1532
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEA--ESLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIEELRERF 400
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2253-2545 |
1.47e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2253 ELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQiea 2332
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--- 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2333 sRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQHerlLTEQLSRNAQEAcarQDTQAQHALLRKLKAEKARALE-LE 2411
Cdd:TIGR02168 793 -QLKEELKALREALDELRAELTLLNEEAANLRERLES---LERRIAATERRL---EDLEEQIEELSEDIESLAAEIEeLE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2412 AMLEKVQKQAAHTQQQLEAQAQERcLELRREKEvsgNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQ 2491
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEAL-ALLRSELE---ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1958758593 2492 EARQDEKRMDrrssredldkrKWQRVKEKLRELELQRQRDEHKIEQLQRLVREL 2545
Cdd:TIGR02168 942 QERLSEEYSL-----------TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1303-1423 |
1.65e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1303 AKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ---------LQEELEKQRRSTE 1373
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkeyeaLQKEIESLKRRIS 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758593 1374 ELE--------VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:COG1579 107 DLEdeilelmeRIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
286-586 |
1.71e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 286 QHQAAIRKLQEdlrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSwep 365
Cdd:pfam17380 279 QHQKAVSERQQ---QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER--- 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 366 lLAQASHLEELQHLRS-----DFAQQQQQERAQHESELEHLRVYFE----KKLNDAEKTYQEDLTVFQQRLQEAREESLE 436
Cdd:pfam17380 353 -IRQEERKRELERIRQeeiamEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQRKIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 437 SAEISSSCMFPEETSGRERkeppdpldLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEwELSREDLKRDAE 516
Cdd:pfam17380 432 ARQREVRRLEEERAREMER--------VRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKELE 502
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 517 EKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQgHLRQLEQELTRDEVL 586
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE-QMRKATEERSRLEAM 571
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2395-2551 |
1.72e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2395 ALLRKLKAEKARALELEAMLEKVQKQAAHtqQQLEAQAQERCLELRREKEVSGNLRSAVDALQ-THKQELgccLEREREK 2473
Cdd:COG4913 225 EAADALVEHFDDLERAHEALEDAREQIEL--LEPIRELAERYAAARERLAELEYLRAALRLWFaQRRLEL---LEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2474 aawLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV---KEKLRELELQRQRDEHKIEQLQRLVRELRWKEE 2550
Cdd:COG4913 300 ---LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeqlEREIERLERELEERERRRARLEALLAALGLPLP 376
|
.
gi 1958758593 2551 A 2551
Cdd:COG4913 377 A 377
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2322-2546 |
1.79e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2322 DNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLsRNAQEACARQDTQAQHALLR 2398
Cdd:TIGR02168 680 EELEEKIEELEEKIAELekaLAELRKELEELEEELEQLRKELEELSRQISALRKDLARL-EAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2399 kLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQ 2478
Cdd:TIGR02168 759 -LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2479 AELEQLSARVKQQEARQDEKRMDRRSSREDLDK--RKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELR 2546
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALALLRSELEELSEELRELE 907
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
194-521 |
1.85e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 194 LRNEQETAELKEKFRSEMEKTvQMMETLKQDWESERELclETLRKELSAKhqsemeglqnqfQKELSEQKAELEKIFQAK 273
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREY-EGYELLKEKEALERQK--EAIERQLASL------------EEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 274 HEAEVSLKNLEAQHQA----AIRKLQEDLRSEHCQYLQdlelrFREKEKAKELELETLQASyedlKAQSQEEIRHLWSQL 349
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDlgeeEQLRVKEKIGELEAEIAS-----LERSIAEKERELEDAEER----LAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 350 ESMKTNREEQNGSWEPLLAQASHL-EELQHLRSDFAQQQQQERAQHEsELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQ 428
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELkEELEDLRAELEEVDKEFAETRD-ELKDYREKLE-KLKREINELKRELDRLQEELQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 429 EAREEsLESAEISSSCMFPEETSGRERKEppdplDLQLEQPKAQGSLiEDYQEKLSNAEEKIELMKQEFQKKEAEwelsR 508
Cdd:TIGR02169 417 RLSEE-LADLNAAIAGIEAKINELEEEKE-----DKALEIKKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKE----L 485
|
330
....*....|...
gi 1958758593 509 EDLKRDAEEKLAS 521
Cdd:TIGR02169 486 SKLQRELAEAEAQ 498
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1303-1423 |
2.02e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1303 AKLDEEVELLQE---KLREKLDGFN-ELVIKKDLA------DQQLL-IQEEEIKHLEETNENIQRQMAQLQEELEkqrrs 1371
Cdd:smart00787 161 KLLMKELELLNSikpKLRDRKDALEeELRQLKQLEdeledcDPTELdRAKEKLKKLLQEIMIKVKKLEELEEELQ----- 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 1372 teELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:smart00787 236 --ELEsKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1027-1409 |
2.09e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1027 ENTQECEQPIRKVYQSLSTAVEglLDMALDSSKQLEDARQLHRCVEK--EFRHRDEEMAQAVQKQQELLERLREESAAKD 1104
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1105 rlALELHTAEGLLEgfKVEKADLQEALGKKEESEQQLIVEL----------EDLRKQLQQASRELLTLKEENsvlwNQKE 1174
Cdd:PTZ00121 1466 --AEEAKKADEAKK--KAEEAKKADEAKKKAEEAKKKADEAkkaaeakkkaDEAKKAEEAKKADEAKKAEEA----KKAD 1537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1175 TFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRVLESELEDQLVQHR--GCAQLAEEVTTLKQQLATLDK 1252
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKAE 1616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1253 HLRSQRQFM---DEQAAEREHEREEFQQEIKWLEgQLRQA-----TRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFN 1324
Cdd:PTZ00121 1617 EAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAE-ELKKAeeenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1325 ELVIKKDLADQQLLIQEEEIKHLEE---TNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQ 1401
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKKAEElkkAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
....*...
gi 1958758593 1402 LQKAKAEE 1409
Cdd:PTZ00121 1776 EKEAVIEE 1783
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1072-1423 |
2.27e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1072 EKEFRHRDEEMAQAVQKQQELLERLREEsaakdrlaleLHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQ 1151
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1152 LQQASRELLTLKEEnsvlwnQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRatllsqmRVLESELEDQLvqhr 1231
Cdd:pfam12128 669 KNKALAERKDSANE------RLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYW-------QVVEGALDAQL---- 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1232 gcAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPR---------DSQC 1302
Cdd:pfam12128 732 --ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyqetwLQRR 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1303 AKLDEEVELLQEKLREkldgfnelvIKKDLADQQlliqeeeikhlEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1382
Cdd:pfam12128 810 PRLATQLSNIERAISE---------LQQQLARLI-----------ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM 869
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958758593 1383 SEIEELkaiieHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:pfam12128 870 SKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYL 905
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1094-1291 |
2.51e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1094 ERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQK 1173
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1174 ETFTNEAKEREAALQK-----EVESLTRDqwESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLA 1248
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958758593 1249 TLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATR 1291
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
179-279 |
2.62e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 179 ELMREQHAREKEEMALRNEQETA--ELKEKFRSEMEKTVQMMETLKQDWESERELCLE--TLRKELSAKHqsemeGLQNQ 254
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDEAsfERLAELRDELAELEEELEALKARWEAEKELIEEiqELKEELEQRY-----GKIPE 489
|
90 100
....*....|....*....|....*
gi 1958758593 255 FQKELSEQKAELEKIFQAKHEaEVS 279
Cdd:COG0542 490 LEKELAELEEELAELAPLLRE-EVT 513
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
198-345 |
2.80e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 198 QETAELKEKFRSEMEKTVQMMETLKQDWESeRELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKifQAKHEAE 277
Cdd:cd16269 149 EDREKLVEKYRQVPRKGVKAEEVLQEFLQS-KEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLE--EQQRELE 225
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 278 VSLKNLEAQHQAAIRKLQEDLRSEHCQYLQDLE--LRFREKEKAKELELETLQASyedlkAQSQEEIRHL 345
Cdd:cd16269 226 QKLEDQERSYEEHLRQLKEKMEEERENLLKEQEraLESKLKEQEALLEEGFKEQA-----ELLQEEIRSL 290
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1328-1602 |
3.02e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1328 IKKDLADQQLLIQ----EEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQ 1403
Cdd:TIGR02168 218 LKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1404 KAKAEEIEQLHEVIEKLQSELSlMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLadhghS 1483
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-----E 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1484 QALEALQERLQDAEAAAArhltELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWKVSHSVELEAL 1563
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958758593 1564 LLALAHFQHA-VEQQTSATPDEPPKLQQLLVQCARLSHQL 1602
Cdd:TIGR02168 448 ELEELQEELErLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
181-580 |
3.10e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 181 MR-EQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMME----------TLKQDWESERE---LCLETLR-KELSAKHQ 245
Cdd:PRK04863 275 MRhANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARelaelneaesDLEQDYQAASDhlnLVQTALRqQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 246 SEMEGL------QNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIrKLQEDLRSEHCQYLQDLElRFREKEKA 319
Cdd:PRK04863 355 ADLEELeerleeQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL-DVQQTRAIQYQQAVQALE-RAKQLCGL 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 320 KELELETLQASYEDLKAQSQE---EIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHES 396
Cdd:PRK04863 433 PDLTADNAEDWLEEFQAKEQEateELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 397 E-LEHLRvyfeKKLNDAEKTYQEdltvfQQRLQEAREESlesaeissscmfpeetSGRERKEPPDPLDLQLEQpKAQGSL 475
Cdd:PRK04863 513 EqLQQLR----MRLSELEQRLRQ-----QQRAERLLAEF----------------CKRLGKNLDDEDELEQLQ-EELEAR 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 476 IEDYQEKLSNAEEKIELMKQEfqkkeaewelsREDLKRDAEE--KLASMFLELREKAEseklsiinrfELRESSMRHLQD 553
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQ-----------LEQLQARIQRlaARAPAWLAAQDALA----------RLREQSGEEFED 625
|
410 420 430
....*....|....*....|....*....|..
gi 1958758593 554 QQA-----AQISDLERSLREQQGHLRQLEQEL 580
Cdd:PRK04863 626 SQDvteymQQLLERERELTVERDELAARKQAL 657
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1059-1231 |
3.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1059 KQLEDARQLHRCVEkEFRHRDEEMAQAVQKQQEL---LERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1135
Cdd:COG4913 641 DALQERREALQRLA-EYSWDEIDVASAEREIAELeaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1136 ESEQQLIVELEDLRKQLQQASRElltlkeensvlwNQKETFTNEAKEREAALQKEVESLTRDQWESRkqsekdRATLLSQ 1215
Cdd:COG4913 720 KELEQAEEELDELQDRLEAAEDL------------ARLELRALLEERFAAALGDAVERELRENLEER------IDALRAR 781
|
170
....*....|....*.
gi 1958758593 1216 MRVLESELEDQLVQHR 1231
Cdd:COG4913 782 LNRAEEELERAMRAFN 797
|
|
| BspD6I-like |
cd22316 |
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction ... |
1303-1423 |
3.34e-03 |
|
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction endonuclease nicking endonuclease BspD6I recognizes a pseudosymmetric DNA sequence (5'-GAGTC) and cuts both strands outside the recognition motif 4 nucleotides downstream. It forms the large subunit in a heterodimeric arrangement. This catalytic domain/subunit belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411720 Cd Length: 345 Bit Score: 42.67 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1303 AKLDEEVELLQEKLREKLDGFNELVIKKDLADqqlliqeeeIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS-- 1380
Cdd:cd22316 38 EKKVEVEEILSNVERKPIFFDSDDDYLEYLFN---------PALPPLDNDDKANLVLELLRIRLKERGILIKISSKPLlt 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1958758593 1381 ---RNSEIEELKAIIEHLQENQeqLQKAKAEEIEQLHEVIEKLQSE 1423
Cdd:cd22316 109 padLNIIRKELENKLKKLREKK--YAKRQAEDWEEILEYFDLIENR 152
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1144-1368 |
3.37e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1144 ELEDLRKQ------LQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMR 1217
Cdd:COG4913 243 ALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1218 VLESELEDQLVQHRGcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgp 1297
Cdd:COG4913 323 EELDELEAQIRGNGG-----DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA------ 391
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758593 1298 rdsQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQqlliqEEEIKHLEETNENIQRQMAQLQEELEKQ 1368
Cdd:COG4913 392 ---LLEALEEELEALEEALAEAEAALRDL--RRELREL-----EAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2293-2497 |
4.16e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2293 LEELKISLEK------QLAQNNQLcVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEA 2366
Cdd:COG3206 184 LPELRKELEEaeaaleEFRQKNGL-VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2367 LQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKAralELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEvs 2446
Cdd:COG3206 263 PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA---ALRAQLQQEAQRILASLEAELEALQAREASLQAQLA-- 337
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958758593 2447 gNLRSAVDALQTHKQELgccLEREREKAAwLQAELEQLSARvkQQEARQDE 2497
Cdd:COG3206 338 -QLEARLAELPELEAEL---RRLEREVEV-ARELYESLLQR--LEEARLAE 381
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1054-1424 |
4.46e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1054 ALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAK---DRLALELHTAEGLLEGFKVEKAdlqEA 1130
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaeeKKKADELKKAEELKKAEEKKKA---EE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1131 LGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRa 1210
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK- 1647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1211 tllsQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQL--ATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1288
Cdd:PTZ00121 1648 ----KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1289 ATRPRPPgpRDSQCAKLDEEVELLQEKLREKLDGFNELvikkdladqQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQ 1368
Cdd:PTZ00121 1724 AEEENKI--KAEEAKKEAEEDKKKAEEAKKDEEEKKKI---------AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758593 1369 RRSTEELEVVNSRNSEIeelkaIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:PTZ00121 1793 RMEVDKKIKDIFDNFAN-----IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQL 1843
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1090-1413 |
4.51e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.52 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1090 QELLERLRE---ESAAKDRLALE--LHTAEGLLEGFKVEKAdlqealgKKEESE-QQLIVELEDLRKQLQQASRELLTLK 1163
Cdd:PRK04778 63 EEKFEEWRQkwdEIVTNSLPDIEeqLFEAEELNDKFRFRKA-------KHEINEiESLLDLIEEDIEQILEELQELLESE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1164 EENSvlwnqketftneakereaalqKEVESLTRDQWESRKQSEKDRATLLSQMRVLE---SELEDQLVQHrgcAQLAEE- 1239
Cdd:PRK04778 136 EKNR---------------------EEVEQLKDLYRELRKSLLANRFSFGPALDELEkqlENLEEEFSQF---VELTESg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1240 -VTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDsqcaKLDEEVELLQEKLRE 1318
Cdd:PRK04778 192 dYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL----DIEKEIQDLKEQIDE 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1319 KLDgfnelvikkdladqqlLIQEEEIKHLEETNENIQRQMAQLQEELEKqrrsteELEVVNSRNSEIEELKAIIEHLQEN 1398
Cdd:PRK04778 268 NLA----------------LLEELDLDEAEEKNEEIQERIDQLYDILER------EVKARKYVEKNSDTLPDFLEHAKEQ 325
|
330
....*....|....*
gi 1958758593 1399 QEQLQkakaEEIEQL 1413
Cdd:PRK04778 326 NKELK----EEIDRV 336
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1306-1423 |
4.59e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1306 DEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEetneniqRQMAQLQEELEKqrrsteELEVVNSRNSEI 1385
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE-------KRLLQKEENLDR------KLELLEKREEEL 112
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958758593 1386 EELKAIIEHLQEN----QEQLQKAKAEEIEQLhEVIEKLQSE 1423
Cdd:PRK12704 113 EKKEKELEQKQQElekkEEELEELIEEQLQEL-ERISGLTAE 153
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1073-1229 |
5.40e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 41.67 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1073 KEFRHRDEEMAQAVQKQQELLERLREESAAKDrlaLELHTAEGL-LEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQ 1151
Cdd:pfam09787 7 QELADYKQKAARILQSKEKLIASLKEGSGVEG---LDSSTALTLeLEELRQERDLLREEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758593 1152 LQQasrELLTLKEENSVLwnqKETFTNEAKEREAAlQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQ 1229
Cdd:pfam09787 84 QQE---EAESSREQLQEL---EEQLATERSARREA-EAELERLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQ 154
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1057-1374 |
5.44e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1057 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKqqelLERLREEsaaKDRLALELHTAEgllegFKVEKADLQEALGKKEE 1136
Cdd:PLN02939 126 SDFQLEDLVGMIQNAEKNILLLNQARLQALED----LEKILTE---KEALQGKINILE-----MRLSETDARIKLAAQEK 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1137 SEQQLIVE-LEDLRKQLQQA-----------SRELLTLKEENSVLWNQKEtftneakereaALQKEVESLTRDQwESRKQ 1204
Cdd:PLN02939 194 IHVEILEEqLEKLRNELLIRgateglcvhslSKELDVLKEENMLLKDDIQ-----------FLKAELIEVAETE-ERVFK 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1205 SEKDRATLLSQMRVLESEL----EDQL-VQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdEQAAEREHEREEFQQEI 1279
Cdd:PLN02939 262 LEKERSLLDASLRELESKFivaqEDVSkLSPLQYDCWWEKVENLQDLLDRATNQV--------EKAALVLDQNQDLRDKV 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1280 KWLEGQLRQAtrprppgprdsQCAKLD-EEVELLQEKLREKLDGFnelvikkDLADQQLLIQeeeIKHLEETNENIQRQM 1358
Cdd:PLN02939 334 DKLEASLKEA-----------NVSKFSsYKVELLQQKLKLLEERL-------QASDHEIHSY---IQLYQESIKEFQDTL 392
|
330
....*....|....*.
gi 1958758593 1359 AQLQEELEKqrRSTEE 1374
Cdd:PLN02939 393 SKLKEESKK--RSLEH 406
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
232-499 |
5.54e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 42.47 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 232 CLETLRKELSA-KHQSEMEGLQNQFQKELSEQ---KAELEKIFQAKHEAEV-----SLKNLEAQHQAAIRKLQEDLRSEH 302
Cdd:PTZ00341 294 CRKIMNSDISSfKHINELKSLEHRAAKAAEAEmkkRAEKPKKKKSKRRGWLccgggDIETVEPQQEEPVQDVGEHQINEY 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 303 CQYLQDLELRFREK--------EKAKELELETLQASYED----LKAQSQEEIRHL-WSQLESMKTNREEQNG-SWEPLLA 368
Cdd:PTZ00341 374 GDILPSLKASINNSainyydavKDGKYLDDDSSDALYTDedllFDLEKQKYMDMLdGSEDESVEDNEEEHSGdANEEELS 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 369 QASHLEElQHLRSDFAQQQQQERAQHESELEhlrVYFEKKLNDaektYQEDLTVFQQRLQEAREESLESAEIssscmfpe 448
Cdd:PTZ00341 454 VDEHVEE-HNADDSGEQQSDDESGEHQSVNE---IVEEQSVNE----HVEEPTVADIVEQETVDEHVEEPAV-------- 517
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1958758593 449 etsgrERKEPPDPLDLQLEQPKAQGSLIedyQEKLSNAEEKIELMKQEFQK 499
Cdd:PTZ00341 518 -----DENEEQQTADEHVEEPTIAEEHV---EEEISTAEEHIEEPASDVQQ 560
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1347-1542 |
6.33e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1347 LEETNENIQR----------QMAQLQEELEKQRRS---TEELEVV---------NSRNSEIEELKAIIEHLQENQEQLQK 1404
Cdd:COG1196 181 LEATEENLERledilgelerQLEPLERQAEKAERYrelKEELKELeaellllklRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1405 AKAE---EIEQLHEVIEKLQSELSLMGPTVHEmsdlppgsLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLADH- 1480
Cdd:COG1196 261 ELAEleaELEELRLELEELELELEEAQAEEYE--------LLAELARLEQDIARLEERRRELEERLEELEEELAELEEEl 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758593 1481 -GHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQR 1542
Cdd:COG1196 333 eELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1103-1425 |
6.52e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1103 KDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSvlwnQKETFTNEAKE 1182
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL----NIQKNIDKIKN 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1183 REAALQKEVESLtrdqwesrKQSEKDRATLLSQMRVLE---SELEDQLVQ-HRGCAQLAEEVTTLKQQLATL-DKHLRSQ 1257
Cdd:TIGR04523 195 KLLKLELLLSNL--------KKKIQKNKSLESQISELKkqnNQLKDNIEKkQQEINEKTTEISNTQTQLNQLkDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1258 RQFMDEQAAEREHERE---------EFQQEIKWLEGQLRQATRPRppgpRDSQCAKLDEEVELLQEKLREKLDGFNELvi 1328
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKikelekqlnQLKSEISDLNNQKEQDWNKE----LKSELKNQEKKLEEIQNQISQNNKIISQL-- 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1329 kkdlaDQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEE-LEVVNSRNSEIEELKAIIEHlQENQEQLQKAKA 1407
Cdd:TIGR04523 341 -----NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSyKQEIKNLESQINDLESKIQN-QEKLNQQKDEQI 414
|
330
....*....|....*...
gi 1958758593 1408 EEIEQLHEVIEKLQSELS 1425
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLK 432
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1110-1422 |
8.33e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.76 E-value: 8.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1110 LHTAEGLLEGFKVEKA-------------------DLQEALGKKEESEQQLIVELEDLRKQLQQASRELLT--------- 1161
Cdd:pfam06160 69 LFEAEELNDKYRFKKAkkaldeieellddieedikQILEELDELLESEEKNREEVEELKDKYRELRKTLLAnrfsygpai 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1162 --LKEENSVLWNQKETFTN--------EAKEREAALQKEVESLtrdqwesrkqsEKDRATLLSQMRVLESELEDQLVQHR 1231
Cdd:pfam06160 149 deLEKQLAEIEEEFSQFEEltesgdylEAREVLEKLEEETDAL-----------EELMEDIPPLYEELKTELPDQLEELK 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1232 -GCAQLAEEvttlKQQLATLDkhlrsqrqfmdeqaaerehereeFQQEIKWLEGQLRQATrprppgprdSQCAKLD-EEV 1309
Cdd:pfam06160 218 eGYREMEEE----GYALEHLN-----------------------VDKEIQQLEEQLEENL---------ALLENLElDEA 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1310 ELLQEKLREKLDGFNEL----VIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ-------EELEKQRRSTEELEVV 1378
Cdd:pfam06160 262 EEALEEIEERIDQLYDLlekeVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQqsytlneNELERVRGLEKQLEEL 341
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1958758593 1379 NSRNSEIEELKA--------IIEHLQENQEQLQKAKAEEIeqlhEVIEKLQS 1422
Cdd:pfam06160 342 EKRYDEIVERLEekevayseLQEELEEILEQLEEIEEEQE----EFKESLQS 389
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1084-1424 |
8.88e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1084 QAVQKQQELLERLREESAAkdrLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRK----------QLQ 1153
Cdd:COG3096 340 QTALRQQEKIERYQEDLEE---LTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQaldvqqtraiQYQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1154 QASRELltlkEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQ--------SEKDRATLLSQMRVLESELED 1225
Cdd:COG3096 417 QAVQAL----EKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKlsvadaarRQFEKAYELVCKIAGEVERSQ 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1226 -------QLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKwLEGQLRQAtrprppgpr 1298
Cdd:COG3096 493 awqtareLLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEE-LEELLAEL--------- 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1299 DSQCAKLDEEVELLQEK---LREKLDGFNELVikKDLAD--------QQLLIQEEEikHLEETNENIQRQMAQLQEELEK 1367
Cdd:COG3096 563 EAQLEELEEQAAEAVEQrseLRQQLEQLRARI--KELAArapawlaaQDALERLRE--QSGEALADSQEVTAAMQQLLER 638
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758593 1368 QRRSTEElevvnsrNSEIEELKaiiEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1424
Cdd:COG3096 639 EREATVE-------RDELAARK---QALESQIERLSQPGGAEDPRLLALAERLGGVL 685
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1061-1426 |
9.10e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 9.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1061 LEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAK-DRLALELHTAEGLLEGFKVEKADLQEALGKK-EESE 1138
Cdd:pfam15921 129 MADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQEIRSILVDFEEASGKKiYEHD 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1139 QQLIVELEDLRKQLQQASRELLT----LKEENSVLWNQKETFTNEAKER-EAALQK--------------EVESLTRDQW 1199
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKiELLLQQhqdrieqlisehevEITGLTEKAS 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1200 ESRKQSEkdraTLLSQMRVLESELEDQLVQH-RGCAQLAEEVTTLKQQLATLDK-------HLRSQRQFMDEQAAEREHE 1271
Cdd:pfam15921 289 SARSQAN----SIQSQLEIIQEQARNQNSMYmRQLSDLESTVSQLRSELREAKRmyedkieELEKQLVLANSELTEARTE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1272 REEFQQEIKWLEGQLRQATrprppgprdSQCAKLDEEVELLQEKLRE--KLDGFNELVI---KKDLADQQLLIQEEE--I 1344
Cdd:pfam15921 365 RDQFSQESGNLDDQLQKLL---------ADLHKREKELSLEKEQNKRlwDRDTGNSITIdhlRRELDDRNMEVQRLEalL 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 1345 KHLE-ETNENIQRQMAQLQ---EELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQKA-------------KA 1407
Cdd:pfam15921 436 KAMKsECQGQMERQMAAIQgknESLEKVSSLTAQLE------STKEMLRKVVEELTAKKMTLESSertvsdltaslqeKE 509
|
410
....*....|....*....
gi 1958758593 1408 EEIEQLHEVIEKLQSELSL 1426
Cdd:pfam15921 510 RAIEATNAEITKLRSRVDL 528
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2042-2523 |
9.58e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2042 EELLQAIQEVFAREQENAELQprpysSDLGDYNSLVKKLEKVIQEQGDLQKVREHACLPDRSSLLAEIQALRAQLRmthl 2121
Cdd:COG1196 323 EELAELEEELEELEEELEELE-----EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2122 qNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSEL 2201
Cdd:COG1196 394 -AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2202 HACKQENTNLLESLDKVQQEVLRLRygHVTWSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLR 2281
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLL--EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2282 HLQREGQSSRALEELkislekqlaqnnqlcvaLKHERAAKDNLQKELQIEASRcEALLAQEKGQLSELRKSLEAERSRSL 2361
Cdd:COG1196 551 IVVEDDEVAAAAIEY-----------------LKAAKAGRATFLPLDKIRARA-ALAAALARGAIGAAVDLVASDLREAD 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2362 ELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRR 2441
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758593 2442 EKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL 2521
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
..
gi 1958758593 2522 RE 2523
Cdd:COG1196 773 ER 774
|
|
| |
