|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
27-770 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 1000.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 27 MASTWASNVPLVQSPPGQDVLERRLDTQRSTVTMWGQDFCGDRQGLGRRGRSLELGVSGALSQQAELISRQLQELRLLEE 106
Cdd:pfam07111 1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 107 EVRTLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQKELEEIQSLHQEQLSSLTQAH 186
Cdd:pfam07111 81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 187 QKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKYVGEQVPPEVPSQAR 266
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 267 ELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDPLEPEFPKKCRSLLRGWREKVFALMV 346
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 347 QLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQEQQAASAE 426
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 427 EQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLMARKLALVQLRLESCPPPEPAPPPDTDLS 506
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 507 LELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEE 586
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 587 AASLRQELTQQQEIYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEAR 666
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 667 KEEGQRLTRRVQELERDKNLMLATLKQEGLLSRYKQQRLLAVLPSGVSKKC---SSQPVEPPES--AAASPCKESMKGSL 741
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLDKKSvvsSPRPECSASApiPAAVPTRESIKGSL 720
|
730 740
....*....|....*....|....*....
gi 1958757793 742 TVLLDNLQGLSEAISRDDAICLEDNQNTK 770
Cdd:pfam07111 721 TVLLDNLQGLSEAISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-683 |
1.05e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 1.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 118 QKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQKELEEIQSLHQE--QLSSLTQAHQKALDSLTS 195
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEleELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 196 KAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKyvgeqvppevpsqARELEQKELLD 275
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE-------------ELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 276 TLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDPLEpefpkkcRSLLRgwREKVFALMVQLKAQDLQH 355
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE-------ALLER--LERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 356 RDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQEQQAASAEEQLKFVVSA 435
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 436 MNSTQARLQSTMTRVDQAV------ARIPSLCNRLSYAVRK-----VHTIKGLMARKLALVQLRLESCPPPEPAPPPDTD 504
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVeaayeaALEAALAAALQNIVVEddevaAAAIEYLKAAKAGRATFLPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 505 LSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEH-RHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQES 583
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 584 TEEAASLRQELTQQQEIYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQD 663
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
570 580
....*....|....*....|..
gi 1958757793 664 EARKEEGQR--LTRRVQELERD 683
Cdd:COG1196 754 EELPEPPDLeeLERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
108-705 |
2.84e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.49 E-value: 2.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 108 VRTLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQKE----------LEEIQSLHQE 177
Cdd:PTZ00121 1187 VRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEeernneeirkFEEARMAHFA 1266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 178 QLSSLTQAHQKALDSLTSKAEDLEKSLnslEMKQAGEAKQLTMAQKEAELLR--NQLSKTQEELEAQVtlvENLRKYVGE 255
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKAD---EAKKAEEKKKADEAKKKAEEAKkaDEAKKKAEEAKKKA---DAAKKKAEE 1340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 256 QvppEVPSQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLThmlalQEEELTRKIHPLDPLEPEFPKKCRSLLR 335
Cdd:PTZ00121 1341 A---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK-----KKAEEKKKADEAKKKAEEDKKKADELKK 1412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 336 GWREKVFALMVQLKAQDLQHRDSTKQLRDQ---VAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQ 412
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEakkADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 413 EARWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQA-----------VARIPSLcnRLSYAVRKVHTIKGL---- 477
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAkkadeakkaeeKKKADEL--KKAEELKKAEEKKKAeeak 1570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 478 -------MARKLALVQLRLESCPPPEPAPPPDTDLSLELEQLR-EERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLT 549
Cdd:PTZ00121 1571 kaeedknMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKkAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 550 EVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQEiygqalQEKVAEVESRLREQlsdtKRRLNE 629
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE------AKKAEELKKKEAEE----KKKAEE 1720
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958757793 630 ARREQAKAVVSLRQIQHKATLEKERNQELRRlqDEARKEEGQRLTRRVQELERDKNLMLATLKQEGLLSRYKQQRL 705
Cdd:PTZ00121 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
508-706 |
5.20e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 5.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 508 ELEQLREERNRLDAELQlSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEA 587
Cdd:COG1196 268 ELEELRLELEELELELE-EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 588 ASLRQELTQQQEIYgQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEARK 667
Cdd:COG1196 347 EEAEEELEEAEAEL-AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958757793 668 EEGQRLTRRVQELERDKNLMLATLKQEGLLSRYKQQRLL 706
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
361-710 |
7.59e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 7.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 361 QLRDQVAELQEQVtaqsqEQAILQRALQDKTAQVEVERMStktlkMELSQAQEARWRQEQQAASAEEQLKFVVSAMNSTQ 440
Cdd:COG1196 197 ELERQLEPLERQA-----EKAERYRELKEELKELEAELLL-----LKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 441 ARLQSTMTRVDQAVARIpslcNRLSYAVRKVHTIKGLMARKLALVQLRLEscpppepapppdtDLSLELEQLREERNRLD 520
Cdd:COG1196 267 AELEELRLELEELELEL----EEAQAEEYELLAELARLEQDIARLEERRR-------------ELEERLEELEEELAELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 521 AELQLSAHLIQQEVGRVREQgEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQEI 600
Cdd:COG1196 330 EELEELEEELEELEEELEEA-EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 601 YGQALQ--EKVAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEARKEEGQRLTRRVQ 678
Cdd:COG1196 409 EEALLErlERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340 350
....*....|....*....|....*....|..
gi 1958757793 679 ELERDKNLMLATLKQEGLLSRYKQQRLLAVLP 710
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
86-633 |
1.65e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 1.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 86 ALSQQAELISRQLQELRLLEEEVRTLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQ 165
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 166 KELEEIQSLHQEQLSSltqahQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTL 245
Cdd:COG1196 341 ELEEELEEAEEELEEA-----EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 246 VENLRKYVGEQvppEVPSQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDPLEPe 325
Cdd:COG1196 416 LERLEEELEEL---EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 326 fpkkcrsllRGWREKVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERmstktlk 405
Cdd:COG1196 492 ---------RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED------- 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 406 melsqAQEARWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLMARklALV 485
Cdd:COG1196 556 -----DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR--TLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 486 QLRLESCPPPEPAPPPD-TDLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQE 564
Cdd:COG1196 629 AARLEAALRRAVTLAGRlREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958757793 565 SLASVGQQLEAARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVESrlREQLSDTKRRLNEARRE 633
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE--PPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-629 |
2.31e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 264 QARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLAL---QEEELTRKIHPLDPLEPEFPKKCRSLLRGWREK 340
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQlrkELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 341 VFALmVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQEQ 420
Cdd:TIGR02168 753 SKEL-TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 421 QAASAEEQLKFVVSamnsTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLMARKLALVQLRLESCPPPEPAPP 500
Cdd:TIGR02168 832 RIAATERRLEDLEE----QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 501 PD-TDLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQG 579
Cdd:TIGR02168 908 SKrSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV 987
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958757793 580 QQESTEEAASL---RQELTQQQEIYGQA---LQEKVAEVESRLREQLSDTKRRLNE 629
Cdd:TIGR02168 988 NLAAIEEYEELkerYDFLTAQKEDLTEAketLEEAIEEIDREARERFKDTFDQVNE 1043
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
86-685 |
3.47e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 3.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 86 ALSQQAELISRQLQELRLLEEEVRTLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQ 165
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 166 KELEEIQSLHQEQLSSLTQAHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTL 245
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 246 VENLRKY--------------------VGEQVPPEvPSQARELE--------------QKELLDTLKHLKEDRTNLQATV 291
Cdd:TIGR02168 498 QENLEGFsegvkallknqsglsgilgvLSELISVD-EGYEAAIEaalggrlqavvvenLNAAKKAIAFLKQNELGRVTFL 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 292 ELLQVRVQSLTHMLALQEEELTRKIHPLDPLEpEFPKKCRSLLRGWREKVF---------ALMVQLK------------- 349
Cdd:TIGR02168 577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLV-KFDPKLRKALSYLLGGVLvvddldnalELAKKLRpgyrivtldgdlv 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 350 --------------AQDLQHRDSTKQLRDQVAELQEQVTAQSQEQA--------------ILQRALQDKTAQVEVERMST 401
Cdd:TIGR02168 656 rpggvitggsaktnSSILERRREIEELEEKIEELEEKIAELEKALAelrkeleeleeeleQLRKELEELSRQISALRKDL 735
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 402 KTLKMELSQAQEARWRQEQQAASAEEQLKFVVSAMNSTQARLQ---STMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLM 478
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 479 ARKLALVQLRLESCPPPEPapppdtDLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQgEAEHRHLTEVAQQLEQE 558
Cdd:TIGR02168 816 NEEAANLRERLESLERRIA------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL-ESELEALLNERASLEEA 888
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 559 LQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQEIYgQALQEKVAEVESRLREQLSDTkrrLNEARREQAKAV 638
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL-EGLEVRIDNLQERLSEEYSLT---LEEAEALENKIE 964
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1958757793 639 VSLRQIQHKATLEKERNQELRRLQDEArKEEGQRLTRRVQELERDKN 685
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKELGPVNLAA-IEEYEELKERYDFLTAQKE 1010
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
85-594 |
4.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 85 GALSQQAELISRQLQELRLLEEEVRTLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAK 164
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 165 QKELEEIQSLHQEQlssltQAHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVT 244
Cdd:COG1196 382 EELAEELLEALRAA-----AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 245 LVENLRKYVGEQVppevpsQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDplep 324
Cdd:COG1196 457 EEEALLELLAELL------EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV---- 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 325 efpkkcrSLLRGWREKVFALMVQLKAQDLQHRDsTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTL 404
Cdd:COG1196 527 -------AVLIGVEAAYEAALEAALAAALQNIV-VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 405 KMELSQAQEARWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARipslcnrlsyAVRKVHTIKGLMARKLAL 484
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT----------LEGEGGSAGGSLTGGSRR 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 485 VQLRLESCPPPEPAPPPDTDLSLELEQLREERNRLDAELQLSAHLIQQEvgRVREQGEAEHRHLTEVAQQLEQELQRAQE 564
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL--EEELEEEALEEQLEAEREELLEELLEEEE 746
|
490 500 510
....*....|....*....|....*....|
gi 1958757793 565 SLASVGQQLEAARQGQQESTEEAASLRQEL 594
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-705 |
7.93e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 7.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 111 LRETSLQ-QKMRLESQAVELDALAVAEKAGQAEAEGLRTALAgaemvrknleeAKQKELEEIQSLHQEqLSSLTQAHQKA 189
Cdd:TIGR02168 222 LRELELAlLVLRLEELREELEELQEELKEAEEELEELTAELQ-----------ELEEKLEELRLEVSE-LEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 190 LDSLTSKAEDLEK-------SLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKYVGEQVPPEVP 262
Cdd:TIGR02168 290 LYALANEISRLEQqkqilreRLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 263 SQARELEQKELLDTLK----HLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRkihpldpLEPEFPKKCRSLLRGWR 338
Cdd:TIGR02168 370 LESRLEELEEQLETLRskvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE-------LLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 339 EKVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQ---RALQDKTAQVEVERMSTKTLKMELSQAQ--- 412
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGVKALLKNQSGLSgil 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 413 ---------EARWRQ-----------------EQQAASAEEQLK---------------------------------FVV 433
Cdd:TIGR02168 523 gvlselisvDEGYEAaieaalggrlqavvvenLNAAKKAIAFLKqnelgrvtflpldsikgteiqgndreilkniegFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 434 SAMN--STQARLQSTM----------TRVDQAVARIPSLCNRLSYAVRKVHTI--KGLMARKLALVQL-------RLESC 492
Cdd:TIGR02168 603 VAKDlvKFDPKLRKALsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVrpGGVITGGSAKTNSsilerrrEIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 493 PPPEPAPPPD-TDLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQgEAEHRHLTEVAQQLEQELQRAQESLASVGQ 571
Cdd:TIGR02168 683 EEKIEELEEKiAELEKALAELRKELEELEEELEQLRKELEELSRQISAL-RKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 572 QLEAARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAevesrLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLE 651
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-----LREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1958757793 652 KERNQELRRlQDEARKEEGQRLTRRVQELERDKNLMLATLKQEGLLSRYKQQRL 705
Cdd:TIGR02168 837 ERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
133-684 |
8.88e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 8.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 133 AVAEKAGQAEaEGLRTALAGAEMVRKNlEEAKQKElEEIQSLHQ----EQLSSLTQAHQKALDSLTSKAEDLEKSLNSLE 208
Cdd:PTZ00121 1092 ATEEAFGKAE-EAKKTETGKAEEARKA-EEAKKKA-EDARKAEEarkaEDARKAEEARKAEDAKRVEIARKAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 209 MKQAGEAKQLTMAQKEAELLR-NQLSKTQEELEAQ-------VTLVENLRKYVGEQVPPEVpSQARELEQKEllDTLKHL 280
Cdd:PTZ00121 1169 ARKAEDAKKAEAARKAEEVRKaEELRKAEDARKAEaarkaeeERKAEEARKAEDAKKAEAV-KKAEEAKKDA--EEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 281 KEDRTNlQATVELLQVRVQSLTHMLALQEEELTRKIHPLDPLEP-----------------EFPKKCRSLLRGWREKVFA 343
Cdd:PTZ00121 1246 EEERNN-EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadeakkaeekkkadEAKKKAEEAKKADEAKKKA 1324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 344 LMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQ-RALQDKTAQVEVERMSTKTLKMELSQAQEARWRQEQQA 422
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKaEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 423 ASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTikglmARKLALVQLRLESCPPPEpapppd 502
Cdd:PTZ00121 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE-----AKKAEEAKKKAEEAKKAD------ 1473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 503 tdlslELEQLREERNRLDaELQLSAHLIQQEVGRVREQGEAEHRhltevaqqlEQELQRAQESlasvgQQLEAARQGQQE 582
Cdd:PTZ00121 1474 -----EAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKK---------ADEAKKAEEA-----KKADEAKKAEEA 1533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 583 STEEAASLRQELTQQQEIygqalqEKVAEVESrlreqlSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQ 662
Cdd:PTZ00121 1534 KKADEAKKAEEKKKADEL------KKAEELKK------AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
|
570 580
....*....|....*....|..
gi 1958757793 663 DEARKEEGQRLtrRVQELERDK 684
Cdd:PTZ00121 1602 EEEKKMKAEEA--KKAEEAKIK 1621
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
509-694 |
1.21e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 509 LEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARqgqqestEEAA 588
Cdd:COG4913 254 LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR-------EELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 589 SLRQELTQQQeiyGQALQekvaevesRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRlQDEARKE 668
Cdd:COG4913 327 ELEAQIRGNG---GDRLE--------QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA-EAAALLE 394
|
170 180
....*....|....*....|....*.
gi 1958757793 669 EGQRLTRRVQELERDKNLMLATLKQE 694
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRE 420
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
157-703 |
1.30e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 157 RKNLEEAKQKE--LEEIQSLHQEQLSSLTQA-HQKALDSlTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLS 233
Cdd:COG4913 241 HEALEDAREQIelLEPIRELAERYAAARERLaELEYLRA-ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 234 KTQEELEAqvtLVENLRKYVGEQVppevpsqaRELEQKelldtLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELT 313
Cdd:COG4913 320 ALREELDE---LEAQIRGNGGDRL--------EQLERE-----IERLERELEERERRRARLEALLAALGLPLPASAEEFA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 314 RKIHPLDplepEFPKKCRSLLRGWREKVFALMVQLKAQDLQHRdstkQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQ 393
Cdd:COG4913 384 ALRAEAA----ALLEALEEELEALEEALAEAEAALRDLRRELR----ELEAEIASLERRKSNIPARLLALRDALAEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 394 VEVErmstktLKM--ELSQ--AQEARWRQ--EQ----QAAS---AEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIP-- 458
Cdd:COG4913 456 DEAE------LPFvgELIEvrPEEERWRGaiERvlggFALTllvPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPErp 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 459 -----SLCNRLSYAVRKVHT-IKGLMARKLALV------QLRlescpppepapppDTDLSLELE-QLREERNRL---DAE 522
Cdd:COG4913 530 rldpdSLAGKLDFKPHPFRAwLEAELGRRFDYVcvdspeELR-------------RHPRAITRAgQVKGNGTRHekdDRR 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 523 LQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEE--AASLRQELTQ-QQE 599
Cdd:COG4913 597 RIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREIAElEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 600 IygQALQEKVAEVEsRLREQLSDTKRRLNEARREQAKAvvslrqIQHKATLEKERNQeLRRLQDEARKEEGQRLTRRVQE 679
Cdd:COG4913 677 L--ERLDASSDDLA-ALEEQLEELEAELEELEEELDEL------KGEIGRLEKELEQ-AEEELDELQDRLEAAEDLARLE 746
|
570 580
....*....|....*....|....
gi 1958757793 680 LERDKNLMLATLKQEGLLSRYKQQ 703
Cdd:COG4913 747 LRALLEERFAAALGDAVERELREN 770
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
152-684 |
2.16e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 152 GAEMVRKNLEEAKQkeleEIQSLhQEQLSSLTQAHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQ 231
Cdd:pfam15921 72 GKEHIERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 232 LSKTQEELEAQVTLVENLRKYVGEQVppevpsqarELEQKELLDTLKHLKEDRTnlqatvellqvrvqslthMLALQEEE 311
Cdd:pfam15921 147 LQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRS------------------ILVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 312 LTRKIHPLDPLEPEFpkkcrslLRGWREKVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQvtAQSQEQAILQRAlQDKT 391
Cdd:pfam15921 200 SGKKIYEHDSMSTMH-------FRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSE--SQNKIELLLQQH-QDRI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 392 AQVEVERmstktlKMELSQAQEARWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCN--RLSYAVR 469
Cdd:pfam15921 270 EQLISEH------EVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELReaKRMYEDK 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 470 KVHTIKGLMARKLALVQLRLESCPPPEPAPPPDTDLSLELEQLREERNRLDAELQLSAHLIQQEVGRV----REQGEAEH 545
Cdd:pfam15921 344 IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSitidHLRRELDD 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 546 RHLTevAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAE---VESRLReQLSD 622
Cdd:pfam15921 424 RNME--VQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSER-TVSD 500
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958757793 623 TKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 684
Cdd:pfam15921 501 LTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
190-667 |
2.99e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 2.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 190 LDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKyvgeqvppEVPSQARELE 269
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEA--------ELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 270 QKELLDTLKHLKEDRTNLQATVELLQVRVqslthmlalqeEELTRKIHPLDPLEpefpKKCRSLLRGWREKVFALMVQLK 349
Cdd:COG4717 120 KLEKLLQLLPLYQELEALEAELAELPERL-----------EELEERLEELRELE----EELEELEAELAELQEELEELLE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 350 AQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEvermstkTLKMELSQAQEARWRQEQQAASAEEQL 429
Cdd:COG4717 185 QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE-------QLENELEAAALEERLKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 430 KFVVSAMNSTQARLQSTMTRVDQAVARIPSLCnrlsyavrkvhtIKGLMARKLALVQLRLESCPPPEPAPPPDTDLSLEL 509
Cdd:COG4717 258 LLALLGLGGSLLSLILTIAGVLFLVLGLLALL------------FLLLAREKASLGKEAEELQALPALEELEEEELEELL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 510 EQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQ-----ESLASVGQQLEAARQGQQEST 584
Cdd:COG4717 326 AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAgvedeEELRAALEQAEEYQELKEELE 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 585 EEAASLRQELTQQQEIYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEK---ERNQELRRL 661
Cdd:COG4717 406 ELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAEllqELEELKAEL 485
|
....*.
gi 1958757793 662 QDEARK 667
Cdd:COG4717 486 RELAEE 491
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
353-678 |
3.08e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.11 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 353 LQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEA------RWRQEQQAASAE 426
Cdd:PRK04863 344 LRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAldvqqtRAIQYQQAVQAL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 427 EQLKFVVSAMNST----QARLQSTMTRVDQAVARIPSLCNRLSYAvrkvHTIKGLMARKLALVQlRLESCPPPEPAPPPD 502
Cdd:PRK04863 424 ERAKQLCGLPDLTadnaEDWLEEFQAKEQEATEELLSLEQKLSVA----QAAHSQFEQAYQLVR-KIAGEVSRSEAWDVA 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 503 TDLsleLEQLREERNRLDAELQLSAHLIQQEvGRVREQGEAEhRHLTEVAQQLEQELQRAQEsLASVGQQLEAARQGQQE 582
Cdd:PRK04863 499 REL---LRRLREQRHLAEQLQQLRMRLSELE-QRLRQQQRAE-RLLAEFCKRLGKNLDDEDE-LEQLQEELEARLESLSE 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 583 STEEAASLRQELTQQQEiygqALQEKVAEVESRLRE--QLSDTKRRLNE---ARREQAKAVVSLRQiqhkATLEKERNQE 657
Cdd:PRK04863 573 SVSEARERRMALRQQLE----QLQARIQRLAARAPAwlAAQDALARLREqsgEEFEDSQDVTEYMQ----QLLERERELT 644
|
330 340
....*....|....*....|.
gi 1958757793 658 LRRLQDEARKEEGQRLTRRVQ 678
Cdd:PRK04863 645 VERDELAARKQALDEEIERLS 665
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-699 |
3.19e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 357 DSTKQLRDQVAELQEQVtaqsqEQAILQRALQD--KTAQVEVERMSTKTLKMELSQAQEARWRQEQQAASAEEQLKFVVS 434
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAelRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 435 AMNSTQARLQSTMTRVDQAVARIPSLCNRLSyavRKVHTIKGLMARKLALVQLRLESCPPPEPAPPPDTDLSLELEQLRE 514
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEIS---RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 515 ERNRLDAELQLsahlIQQEVGRVREQGEAEHRHLTEVAQQLEQ---ELQRAQESLASVGQQLEAARQGQQESTEEAASLR 591
Cdd:TIGR02168 345 KLEELKEELES----LEAELEELEAELEELESRLEELEEQLETlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 592 QELTQQQEIYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRrlqdeARKEEGQ 671
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ-----ARLDSLE 495
|
330 340
....*....|....*....|....*....
gi 1958757793 672 RLTRRVQELERD-KNLMLATLKQEGLLSR 699
Cdd:TIGR02168 496 RLQENLEGFSEGvKALLKNQSGLSGILGV 524
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
89-712 |
1.42e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 89 QQAELISRQLQELRLLEEEVRTLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEglrtalagaemVRKNLEEAKQKEL 168
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHE-----------VATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 169 EEIQSLH--QEQLSSLTQAHQkALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELlrnqlskTQEELEAQVTLV 246
Cdd:TIGR00618 376 TLTQHIHtlQQQKTTLTQKLQ-SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQEL-------QQRYAELCAAAI 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 247 ENLRKYVGEQVPPEVPSQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDPLEPEF 326
Cdd:TIGR00618 448 TCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 327 PKKCRSLLRGWR-----EKVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQD----KTAQVEVE 397
Cdd:TIGR00618 528 RRMQRGEQTYAQletseEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRlqdlTEKLSEAE 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 398 RMSTKTLKMELSQAQEA----RWRQEQQAASAEEQLKFvvsamnSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHT 473
Cdd:TIGR00618 608 DMLACEQHALLRKLQPEqdlqDVRLHLQQCSQELALKL------TALHALQLTLTQERVREHALSIRVLPKELLASRQLA 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 474 IKGLMARKLALVQLRLESCPPPEPAPPPDT---DLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTE 550
Cdd:TIGR00618 682 LQKMQSEKEQLTYWKEMLAQCQTLLRELEThieEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTE 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 551 VAQQLEQE----LQRAQEsLASVGQQLEAARQGQQESTEEAASLRQELTQQQEIYGQAL---QEKVAEVESRLREQLSDT 623
Cdd:TIGR00618 762 AHFNNNEEvtaaLQTGAE-LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILnlqCETLVQEEEQFLSRLEEK 840
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 624 KRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEARKE---EGQRLTRRVQELERDKNLMLATLKQEGLLSRY 700
Cdd:TIGR00618 841 SATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKiqfDGDALIKFLHEITLYANVRLANQSEGRFHGRY 920
|
650
....*....|..
gi 1958757793 701 KQQRLLAVLPSG 712
Cdd:TIGR00618 921 ADSHVNARKYQG 932
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
504-704 |
1.44e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 504 DLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQES 583
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 584 TEEAASLRQELT------QQQEIYGQALQEKVAEVESR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKatlEKER 654
Cdd:TIGR02169 328 EAEIDKLLAEIEelereiEEERKRRDKLTEEYAELKEEledLRAELEEVDKEFAETRDELKDYREKLEKLKRE---INEL 404
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 655 NQELRRLQDEARKEEGQ---------RLTRRVQELE-RDKNLMLATLKQEGLLSRYKQQR 704
Cdd:TIGR02169 405 KRELDRLQEELQRLSEEladlnaaiaGIEAKINELEeEKEDKALEIKKQEWKLEQLAADL 464
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
510-712 |
2.48e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 510 EQLREERNRLD-AELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQ---ELQRAQESLASVGQQLEAARQGQ----- 580
Cdd:COG3206 182 EQLPELRKELEeAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEaraELAEAEARLAALRAQLGSGPDALpellq 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 581 ----QESTEEAASLRQELTQQQEIYG------QALQEKVAEVESRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATL 650
Cdd:COG3206 262 spviQQLRAQLAELEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQLAQ 338
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958757793 651 EKERNQELRRLQDEARkeegqrltrrvqELERDKNLMLATLKQegLLSRYKQQRLLAVLPSG 712
Cdd:COG3206 339 LEARLAELPELEAELR------------RLEREVEVARELYES--LLQRLEEARLAEALTVG 386
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
395-684 |
3.42e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 395 EVERMSTK--TLKMELSQAQEARWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVH 472
Cdd:TIGR02169 675 ELQRLRERleGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 473 TIKglmaRKLALVQLRLEscpppepapppdtDLSLELEQLREERNRLDAELqlsAHLIQQEVGRVREQGEAEHRHLTEVA 552
Cdd:TIGR02169 755 NVK----SELKELEARIE-------------ELEEDLHKLEEALNDLEARL---SHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 553 QQLEQELQRAQESLasvgQQLEAARQGQQESTEEAASLRQELTQQQEIyGQALQEKVAEVESRLREQLSDTKRRLNEARR 632
Cdd:TIGR02169 815 REIEQKLNRLTLEK----EYLEKEIQELQEQRIDLKEQIKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958757793 633 EQAKAVVSLRQIQHK-ATLEKERNQElrRLQDEARKEEGQRLTRRVQELERDK 684
Cdd:TIGR02169 890 ERDELEAQLRELERKiEELEAQIEKK--RKRLSELKAKLEALEEELSEIEDPK 940
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-694 |
4.34e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 508 ELEQLREERNRLDAELQLSAHLIQQEvgrvreqgEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEA 587
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 588 ASLRQELTQQQEIYGQAL-----QEKVAEVESRLR-EQLSDTKRRL------NEARREQAKAVVslRQIQHKATLEKERN 655
Cdd:COG4942 93 AELRAELEAQKEELAELLralyrLGRQPPLALLLSpEDFLDAVRRLqylkylAPARREQAEELR--ADLAELAALRAELE 170
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958757793 656 QELRRLQDEARKEEGQRltRRVQELERDKNLMLATLKQE 694
Cdd:COG4942 171 AERAELEALLAELEEER--AALEALKAERQKLLARLEKE 207
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
418-654 |
5.26e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 418 QEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKglmaRKLALVQLRLEscpppeP 497
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELA------E 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 498 APPPDTDLSLELEQLREERNRLDAELQLSAHLIQQEVGrVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAAR 577
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757793 578 QGQQESTEEAASLRQELTQQQEIYGQALQEKvAEVESRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKER 654
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
110-702 |
5.60e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 110 TLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAK-----QKELEEIQSLHQEQLSSLTQ 184
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavtqiEQQAQRIHTELQSKMRSRAK 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 185 AHQKALDSLTSKAEDLE--KSLNSL-----EMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKYVGEQV 257
Cdd:TIGR00618 326 LLMKRAAHVKQQSSIEEqrRLLQTLhsqeiHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 258 PPEVPSQ-ARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDPLEPEFPKKCRSLLRG 336
Cdd:TIGR00618 406 QREQATIdTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 337 WREKVFALMVQLKAQDLQhRDSTKQLRDQVAELQeqvtaQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARW 416
Cdd:TIGR00618 486 TRKKAVVLARLLELQEEP-CPLCGSCIHPNPARQ-----DIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 417 RQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLMARKLALVQLRLESCPPPE 496
Cdd:TIGR00618 560 SLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQ 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 497 PAPPPDTDLSLELEQLREERNRldaELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAA 576
Cdd:TIGR00618 640 ELALKLTALHALQLTLTQERVR---EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEY 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 577 RQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVESRLREQlsdtkrrLNEARREQAKAVVSLRQIQHKATLekERNQ 656
Cdd:TIGR00618 717 DREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR-------TEAHFNNNEEVTAALQTGAELSHL--AAEI 787
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1958757793 657 ELRRLQDEARKEEGQRLTRRVQElERDKNLMLATLKQEGLLSRYKQ 702
Cdd:TIGR00618 788 QFFNRLREEDTHLLKTLEAEIGQ-EIPSDEDILNLQCETLVQEEEQ 832
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
386-650 |
7.32e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 386 ALQDKTAQVEVERmstKTLKMELSQAQEARWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLS 465
Cdd:COG4942 17 AQADAAAEAEAEL---EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 466 YAVRKVHTIKGLMARKLALVQLRLESCPPPEPAPPPDTdlsleleqlreernrldAELQLSAHLIQQEVGRVREQGEAEH 545
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDF-----------------LDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 546 RHLTEVaQQLEQELQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvesrlREQLSDTKR 625
Cdd:COG4942 157 ADLAEL-AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE-----AEELEALIA 230
|
250 260
....*....|....*....|....*
gi 1958757793 626 RLNEARREQAKAVVSLRQIQHKATL 650
Cdd:COG4942 231 RLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
116-701 |
1.19e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 116 LQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQKELEEIQSLHQEQLssltQAHQKALDSLTS 195
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEK----KKAEKELKKEKE 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 196 KAEDLEKSLNSL--------EMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKYVGEQVPPEVPSQARE 267
Cdd:pfam02463 336 EIEELEKELKELeikreaeeEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 268 -------LEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDPLEPEFPKKCRSLLRGWREK 340
Cdd:pfam02463 416 qledllkEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 341 VFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQEQ 420
Cdd:pfam02463 496 EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 421 QAASAEEQLKFVVSAMNSTQ----------ARLQSTMTRVDQAVARIPSLCNRLSYAVRKV-HTIKGLMARKLALVQLRL 489
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAvleidpilnlAQLDKATLEADEDDKRAKVVEGILKDTELTKlKESAKAKESGLRKGVSLE 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 490 ESCPPPEPAPPPDTDLSLELEQLREERNRLDAELQLSAHLIQQevgrvrEQGEAEHRHLTEVAQQLEQELQRAQESLASV 569
Cdd:pfam02463 656 EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQ------LEIKKKEQREKEELKKLKLEAEELLADRVQE 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 570 GQQLEAARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAVVsLRQIQHKAT 649
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQ-EEELRALEE 808
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1958757793 650 LEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLMLATLKQEGLLSRYK 701
Cdd:pfam02463 809 ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 860
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
161-681 |
1.64e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 161 EEAKQKELEEIQSLHQEQLSSLTQAHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQ---- 236
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQllkq 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 237 -----EELEAQVTLVENLRKYVGE--QVPPEVPSQAR----ELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHML 305
Cdd:TIGR00618 265 lrariEELRAQEAVLEETQERINRarKAAPLAAHIKAvtqiEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 306 ALQEEELTRKIHPLDPLEPEFPKKCRSLLRGWREKVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQR 385
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQG 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 386 ALQDKTAQVEVERMstktlkmelsqaqearwRQEQQAASAEEQLKfVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRls 465
Cdd:TIGR00618 425 QLAHAKKQQELQQR-----------------YAELCAAAITCTAQ-CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQ-- 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 466 yaVRKVHTIKGLMARKLALVQLRLESCPPPEPAPPPDTDLSLELEQlreernRLDAELQLSAHLiQQEVGRVREQGEAEH 545
Cdd:TIGR00618 485 --ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTR------RMQRGEQTYAQL-ETSEEDVYHQLTSER 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 546 RHLtevaQQLEQELQRAQESLASVGQQLEAARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVEsRLREQLSDTKR 625
Cdd:TIGR00618 556 KQR----ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR-KLQPEQDLQDV 630
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958757793 626 RLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEARKEEGQRLTRRVQELE 681
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ 686
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
121-643 |
2.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 121 RLESQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLE----EAKQKELEEIQSLHQEQLSSLTQAHQKA----LDS 192
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAElarlEAELERLEARLDALREELDELEAQIRGNggdrLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 193 LTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKYVGEQVppevpsQARELEQKE 272
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL------AEAEAALRD 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 273 LLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLAlqeEELTRKIHPL---------DPLEPEFPKKCRSLLRGWRekvFA 343
Cdd:COG4913 417 LRRELRELEAEIASLERRKSNIPARLLALRDALA---EALGLDEAELpfvgelievRPEEERWRGAIERVLGGFA---LT 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 344 LMV--QLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALqdktaqveVERMSTKT------LKMELSQAQ--- 412
Cdd:COG4913 491 LLVppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSL--------AGKLDFKPhpfrawLEAELGRRFdyv 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 413 ----EARWRQEQQAASAEEQLK--FVVSAMNsTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKGLMA---RKLA 483
Cdd:COG4913 563 cvdsPEELRRHPRAITRAGQVKgnGTRHEKD-DRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEaleAELD 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 484 LVQLRLESCPPPEPAPPPDTD---LSLELEQLREERNRLDAELQLSAHLiQQEVGRVREQgeaehrhltevAQQLEQELQ 560
Cdd:COG4913 642 ALQERREALQRLAEYSWDEIDvasAEREIAELEAELERLDASSDDLAAL-EEQLEELEAE-----------LEELEEELD 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 561 RAQESLASVGQQLEAARQGQQESTE--EAASLRQELTQQQEIYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAKAV 638
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDrlEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
....*
gi 1958757793 639 VSLRQ 643
Cdd:COG4913 790 ERAMR 794
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
505-680 |
3.17e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.27 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 505 LSLELEQ--LREERNRLDAELQLSAHLIQQEVGRVREQgeaehrhLTEVAQQLEQELQRAQE---SLASVGQQLEAARQG 579
Cdd:PRK10929 80 LSAELRQqlNNERDEPRSVPPNMSTDALEQEILQVSSQ-------LLEKSRQAQQEQDRAREisdSLSQLPQQQTEARRQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 580 QQESTEEAASLRQELTQQQEIYGQALQekvAEVESRlreqlsdtKRRLNEARREQakavvslrqiqhkatLEKERNQELR 659
Cdd:PRK10929 153 LNEIERRLQTLGTPNTPLAQAQLTALQ---AESAAL--------KALVDELELAQ---------------LSANNRQELA 206
|
170 180
....*....|....*....|.
gi 1958757793 660 RLQDEARKEEGQRLTRRVQEL 680
Cdd:PRK10929 207 RLRSELAKKRSQQLDAYLQAL 227
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
73-430 |
3.39e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 73 GRRGRSLELGVSGALSQQAELisrqlqelRLLEEEVRTLRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAG 152
Cdd:TIGR02168 659 GVITGGSAKTNSSILERRREI--------EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 153 AEMVRKNLEEAKQKELEEIQSLHQEQLSSLTQ--AHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRN 230
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEieELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 231 QLSKTQEELEAQVTLVENLRKYVGEQvppEVPSQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEE 310
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAAT---ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 311 ELTRKIHPLDPLEPEfpkkcrslLRGWREKVFALmvqlkaqdlqhRDSTKQLRDQVAELQEQVT-AQSQEQAILQRALQD 389
Cdd:TIGR02168 888 ALALLRSELEELSEE--------LRELESKRSEL-----------RRELEELREKLAQLELRLEgLEVRIDNLQERLSEE 948
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958757793 390 ktAQVEVERMSTKTLKMELSQAQearwrQEQQAASAEEQLK 430
Cdd:TIGR02168 949 --YSLTLEEAEALENKIEDDEEE-----ARRRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
162-693 |
3.78e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 162 EAKQKELEEIQSLHQEQLSSLTQAHQKA---LDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLsktQEE 238
Cdd:TIGR02169 300 EAEIASLERSIAEKERELEDAEERLAKLeaeIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL---EEV 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 239 LEAQVTLVENLRKYVgeqvppevpsqaRELEQkelldtlkhLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHP 318
Cdd:TIGR02169 377 DKEFAETRDELKDYR------------EKLEK---------LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 319 LDPLEPEFPKKCRSL--LRGWREKVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEV 396
Cdd:TIGR02169 436 INELEEEKEDKALEIkkQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 397 ERMSTKTLKMELSQAqeARWRQEQQAA---SAEEQLKFVV--------SAMNSTQARLQSTMT-------RVDQAVARIP 458
Cdd:TIGR02169 516 LKASIQGVHGTVAQL--GSVGERYATAievAAGNRLNNVVveddavakEAIELLKRRKAGRATflplnkmRDERRDLSIL 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 459 SLCNRLSYA-----------------------VRKVHTIKGLMArKLALVQLRLE----------SCPPPEPAPPPDTDL 505
Cdd:TIGR02169 594 SEDGVIGFAvdlvefdpkyepafkyvfgdtlvVEDIEAARRLMG-KYRMVTLEGElfeksgamtgGSRAPRGGILFSRSE 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 506 SLELEQLREERNRLDAE---LQLSAHLIQQEVGRVREQGEAEHRHLTEV---AQQLEQELQRAQESLASVGQQLEAARQG 579
Cdd:TIGR02169 673 PAELQRLRERLEGLKRElssLQSELRRIENRLDELSQELSDASRKIGEIekeIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 580 QQESTEEAASLRQELTQQQEIYGQaLQEKVAEVESRLR----EQLSDTKRRLNEARREQAKAVVSLRQIQHKATLEKERN 655
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHK-LEEALNDLEARLShsriPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1958757793 656 QELRR-LQDEARKEEGQR--LTRRVQELERDKNLMLATLKQ 693
Cdd:TIGR02169 832 EKEIQeLQEQRIDLKEQIksIEKEIENLNGKKEELEEELEE 872
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
134-624 |
4.19e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 134 VAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQKeleeiqslhQEQLSSLTQAHQKAlDSLTSKAEDLEKSLNSLEmKQAG 213
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK---------ADAAKKKAEEKKKA-DEAKKKAEEDKKKADELK-KAAA 1415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 214 EAKQLTMAQKEAELLR--NQLSKTQEELEAqvtlVENLRKYVGEQVPPEvpSQARELEQKELLDTLKHLKEDRTNLQAtv 291
Cdd:PTZ00121 1416 AKKKADEAKKKAEEKKkaDEAKKKAEEAKK----ADEAKKKAEEAKKAE--EAKKKAEEAKKADEAKKKAEEAKKADE-- 1487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 292 ellqvrvqslthmLALQEEELTRKIHPLDPLEPEfpKKCRSLLRGWREKVFALMVQlKAQDLQHRDSTKQlRDQVAELQE 371
Cdd:PTZ00121 1488 -------------AKKKAEEAKKKADEAKKAAEA--KKKADEAKKAEEAKKADEAK-KAEEAKKADEAKK-AEEKKKADE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 372 QVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKmELSQAQEARWRQEQQAASAEEQLKfVVSAMNSTQARLQSTMTRVD 451
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE-EAKKAEEARIEEVMKLYEEEKKMK-AEEAKKAEEAKIKAEELKKA 1628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 452 QAVAR-IPSLCNRLSYAVRKVHTIK----GLMARKLALVQLRLESCPPPEPAPPPDTDLSLELEQLR--EERNRLDAELQ 524
Cdd:PTZ00121 1629 EEEKKkVEQLKKKEAEEKKKAEELKkaeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELK 1708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 525 LSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQleaaRQGQQESTEEAASLRQELTQQQEIYGQA 604
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK----KKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
|
490 500
....*....|....*....|
gi 1958757793 605 LQEKVAEVESRLREQLSDTK 624
Cdd:PTZ00121 1785 LDEEDEKRRMEVDKKIKDIF 1804
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
531-695 |
4.29e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.05 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 531 QQEVGRVRE---QGEAEHRHLTEVA------QQLEQELQRAQESLASVGQQLEAARQ------GQQES---TEEAASLRQ 592
Cdd:NF012221 1541 SQQADAVSKhakQDDAAQNALADKEraeadrQRLEQEKQQQLAAISGSQSQLESTDQnaletnGQAQRdaiLEESRAVTK 1620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 593 ELT-------------QQQEIYGQALQEKVAE-VESRLREQLSDTKRRLNEArREQAKAVVSLRQIQHKATLEK------ 652
Cdd:NF012221 1621 ELTtlaqgldaldsqaTYAGESGDQWRNPFAGgLLDRVQEQLDDAKKISGKQ-LADAKQRHVDNQQKVKDAVAKseagva 1699
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958757793 653 --ERNQ-------ELRRLQDEARKEEGQRLTRRVQELERDKNLMLATLKQEG 695
Cdd:NF012221 1700 qgEQNQanaeqdiDDAKADAEKRKDDALAKQNEAQQAESDANAAANDAQSRG 1751
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
504-671 |
4.79e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 504 DLSLELEQLREERNRLDAELQLSAHLIQQE--VGRVREQGE------AEHRHLTEVAQQLEQELQRAQESLASVGQQLEA 575
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEERLERAEDLVEAEdrIERLEERREdleeliAERRETIEEKRERAEELRERAAELEAEAEEKRE 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 576 ARQGQQESTEEAASLRQELTQQQEIYGQALqEKVAEVESRL--REQLSDTKRRLNEARREQAKavvslRQIQHKATLE-- 651
Cdd:PRK02224 559 AAAEAEEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLaaIADAEDEIERLREKREALAE-----LNDERRERLAek 632
|
170 180
....*....|....*....|
gi 1958757793 652 KERNQELRRLQDEARKEEGQ 671
Cdd:PRK02224 633 RERKRELEAEFDEARIEEAR 652
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-438 |
5.87e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 180 SSLTQAHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKyvgeqvpp 259
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK-------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 260 evpsQARELEQKelldtlkhLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPLDplepefpkkcrsLLRGWRE 339
Cdd:COG4942 91 ----EIAELRAE--------LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------YLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 340 KVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQE 419
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|....*....
gi 1958757793 420 QQAASAEEQLKFVVSAMNS 438
Cdd:COG4942 227 ALIARLEAEAAAAAERTPA 245
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
509-677 |
9.62e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 9.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 509 LEQLREERNRLDAELQLSAhliQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEAA 588
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEA---KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 589 SLRQELTQQQEIYGQALQEKVAEVEsrlreqlsdtkrRLNEARREQAKAVVsLRQIQHKAtlEKERNQELRRLQDEArKE 668
Cdd:PRK12704 121 QKQQELEKKEEELEELIEEQLQELE------------RISGLTAEEAKEIL-LEKVEEEA--RHEAAVLIKEIEEEA-KE 184
|
....*....
gi 1958757793 669 EGQRLTRRV 677
Cdd:PRK12704 185 EADKKAKEI 193
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
533-689 |
9.68e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 9.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 533 EVGRVREQGEAEHRHLTEVAQQLEQELQRAQESL-ASVGQQLEAARQGQQESTEEAASlRQELTQQQEIYGQALQEKVAE 611
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARkAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKAEDAKKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 612 VESRLRE-QLSDTKRRLNEARR-EQAKAVVSLRQIQHKATLEKERN-------QELRRLQDEARKEEGQRLTRRVQELER 682
Cdd:PTZ00121 1180 AARKAEEvRKAEELRKAEDARKaEAARKAEEERKAEEARKAEDAKKaeavkkaEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
....*..
gi 1958757793 683 DKNLMLA 689
Cdd:PTZ00121 1260 ARMAHFA 1266
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
402-606 |
9.82e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 402 KTLKMELSQAQEA--RWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKG--- 476
Cdd:COG3206 185 PELRKELEEAEAAleEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspv 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 477 LMARKLALVQLRLEscppPEPAPPPDTDLSLELEQLREERNRLDAElqlsahlIQQEVGRVREQGEAEHRHLTEVAQQLE 556
Cdd:COG3206 265 IQQLRAQLAELEAE----LAELSARYTPNHPDVIALRAQIAALRAQ-------LQQEAQRILASLEAELEALQAREASLQ 333
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958757793 557 QELQRAQESLASVGQQLEaarqgqqesteEAASLRQELTQQQEIYGQALQ 606
Cdd:COG3206 334 AQLAQLEARLAELPELEA-----------ELRRLEREVEVARELYESLLQ 372
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
150-403 |
1.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 150 LAGAEMVRKNLEEAKQKELEEIQslhqEQLssltQAHQKALDSLTSKAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLR 229
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQ----QEI----AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 230 NQLSKTQEELEAQVTLVENLRKYVGEQVppevpsqaRELEQKELLDTLKHLKEDRTNLQATVELlqVRVQSLTHMLALQE 309
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELL--------RALYRLGRQPPLALLLSPEDFLDAVRRL--QYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 310 EELTRKIHPLDPLEPEFPKKcRSLLRGWREKVFALMVQLKAQDLQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQD 389
Cdd:COG4942 153 EELRADLAELAALRAELEAE-RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|....
gi 1958757793 390 KTAQVEVERMSTKT 403
Cdd:COG4942 232 LEAEAAAAAERTPA 245
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
353-678 |
1.19e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 353 LQHRDSTKQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEA------RWRQEQQAASAE 426
Cdd:COG3096 343 LRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAldvqqtRAIQYQQAVQAL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 427 EQLKFVVSAMNSTQA----RLQSTMTRVDQAVARIPSLCNRLS----------YAVRKVHTIKGLMARKLALVQLR--LE 490
Cdd:COG3096 423 EKARALCGLPDLTPEnaedYLAAFRAKEQQATEEVLELEQKLSvadaarrqfeKAYELVCKIAGEVERSQAWQTARelLR 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 491 SCPPPEPAPPPDTDLSLELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEaehrhLTEVAQQLEQELQRAQESLASVG 570
Cdd:COG3096 503 RYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEE-----LEELLAELEAQLEELEEQAAEAV 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 571 QQleaaRQGQQESTEEAASLRQELTQQQEIYgQALQEKVAevesRLREQLSdtkrrlneARREQAKAVVSLRQiqhkATL 650
Cdd:COG3096 578 EQ----RSELRQQLEQLRARIKELAARAPAW-LAAQDALE----RLREQSG--------EALADSQEVTAAMQ----QLL 636
|
330 340
....*....|....*....|....*...
gi 1958757793 651 EKERNQELRRLQDEARKEEGQRLTRRVQ 678
Cdd:COG3096 637 EREREATVERDELAARKQALESQIERLS 664
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
508-682 |
1.38e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 508 ELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVA------QQLEQELQRAQE-------SLASVGQQLE 574
Cdd:COG3096 365 EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyQQAVQALEKARAlcglpdlTPENAEDYLA 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 575 AARQGQQESTEEAASLRQEL-------TQQQEIYgQALQEKVAEVEsrlREQLSDTKRRLNEARREQ---AKAVVSLRQI 644
Cdd:COG3096 445 AFRAKEQQATEEVLELEQKLsvadaarRQFEKAY-ELVCKIAGEVE---RSQAWQTARELLRRYRSQqalAQRLQQLRAQ 520
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958757793 645 QHKATLEKERNQELRRLQDEARKEEGQRLTRRvQELER 682
Cdd:COG3096 521 LAELEQRLRQQQNAERLLEEFCQRIGQQLDAA-EELEE 557
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
508-669 |
1.47e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 508 ELEQLREERNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLEAARQGQQESTEEA 587
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 588 ASLRQELTQQQEIYGQALQEKVAEVESRlreqlsdTKRRLNEARREQAKAVVSLRQIQHKATLEKERNQELRRLQDEARK 667
Cdd:pfam17380 516 KLLEKEMEERQKAIYEEERRREAEEERR-------KQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
|
..
gi 1958757793 668 EE 669
Cdd:pfam17380 589 AE 590
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
87-415 |
2.02e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 87 LSQQAELISRQLQELRLLEEEVRTLRETSLQQKMRLESQAVELDALAVAEKAGQAE----AEGLRTA--LAGAEMVRKnL 160
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkkADELKKAeeLKKAEEKKK-A 1566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 161 EEAKQKELEEIQSLHQEQLssLTQAHQKALDSLTSKAEDlEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELE 240
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEE--AKKAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 241 AQVTLVENLRKYVGEQVPPEVPSQARELEQKELLDTLKHLKEDRTNLQATVEllqvrvqslthmlalQEEELTRKIHPLD 320
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK---------------KEAEEAKKAEELK 1708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 321 PLEPEFPKKCRSLLRGWREKvfalmvQLKAQDLQHRDSTKQLRDQVAELQEQvtaqsQEQAILQRALQDKTAQVEVERMS 400
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEE-----EKKKIAHLKKEEEKKAEEIRKEK 1777
|
330
....*....|....*
gi 1958757793 401 TKTLKMELSQAQEAR 415
Cdd:PTZ00121 1778 EAVIEEELDEEDEKR 1792
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
116-595 |
2.08e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 116 LQQKMRLESQavELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKQKELEEIQSLHQEQLSSLTQAHqKALDSLTS 195
Cdd:pfam05483 273 LEEKTKLQDE--NLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELN-KAKAAHSF 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 196 KAEDLEKSLNSLEMKQAGEAKQLTMAQKEAELLRNQLSKTQEELEAQVTLVENlrkyvgeqvppevpsQARELEQ-KELL 274
Cdd:pfam05483 350 VVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNN---------------KEVELEElKKIL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 275 DTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEE---LTRKIHPLDPLEPEFPKKCRSL---LRGWREKVFALMVQL 348
Cdd:pfam05483 415 AEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEihdLEIQLTAIKTSEEHYLKEVEDLkteLEKEKLKNIELTAHC 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 349 KAQDLQHRDSTKQLRDQVAELQEQ----VTAQSQEQAILQR--ALQDKTAQVEVERMSTKT--------LKMELSQAQEA 414
Cdd:pfam05483 495 DKLLLENKELTQEASDMTLELKKHqediINCKKQEERMLKQieNLEEKEMNLRDELESVREefiqkgdeVKCKLDKSEEN 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 415 RWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSYAVRKVHTIKglmaRKLALVQLRLESCPP 494
Cdd:pfam05483 575 ARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYE----IKVNKLELELASAKQ 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 495 PEPAPPPDTDLSLELEQLREErnRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQLEQELQRAQESLASVGQQLE 574
Cdd:pfam05483 651 KFEEIIDNYQKEIEDKKISEE--KLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
|
490 500
....*....|....*....|.
gi 1958757793 575 AARQGQQESTEEAASLRQELT 595
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELS 749
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
508-681 |
2.09e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 508 ELEQLREERNRLDAELQLSAHLIQQ---EVGRVREQGEAEHR-----------HLTEVAQQLEQELQRAQESLASVGQQL 573
Cdd:COG3096 837 ELAALRQRRSELERELAQHRAQEQQlrqQLDQLKEQLQLLNKllpqanlladeTLADRLEELREELDAAQEAQAFIQQHG 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 574 EAARQ----------------GQQESTEEAASLRQELTQQQEiygqALQEKVAEVE--------------SRLREQLsdt 623
Cdd:COG3096 917 KALAQleplvavlqsdpeqfeQLQADYLQAKEQQRRLKQQIF----ALSEVVQRRPhfsyedavgllgenSDLNEKL--- 989
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 624 KRRLNEARREQAKAVVSLRQIQHKATlekERNQELRRLQD--EARKEEGQRLTRRVQELE 681
Cdd:COG3096 990 RARLEQAEEARREAREQLRQAQAQYS---QYNQVLASLKSsrDAKQQTLQELEQELEELG 1046
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
503-620 |
2.14e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.90 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 503 TDLSLELEQLREERNRLDAELQLSAHLIQQ---EVGRVREQGEAEhrhltevAQQLEQELQRAQESLASVGQQLEAARQG 579
Cdd:pfam09787 43 TALTLELEELRQERDLLREEIQKLRGQIQQlrtELQELEAQQQEE-------AESSREQLQELEEQLATERSARREAEAE 115
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1958757793 580 QQESTEEAASLRQELTQQQEIYGQALQEKVAEVEsRLREQL 620
Cdd:pfam09787 116 LERLQEELRYLEEELRRSKATLQSRIKDREAEIE-KLRNQL 155
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-596 |
2.67e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 360 KQLRDQVAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQEARWRQ--------EQQAASAEEQLKF 431
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 432 VVSAMNSTQARLQSTMTRVDQAVARIPSLCNRL-SYAVRKVHTIKGLMARK--LALVQLRLESCPPPEPAPPPDT-DLSL 507
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIeEERKRRDKLTEEYAELKeeLEDLRAELEEVDKEFAETRDELkDYRE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 508 ELEQLREERNRLDAE---LQLSAHLIQQEVGRVREQGEAEHRHLTEVA----------QQLEQELQRAQESLASVGQQLE 574
Cdd:TIGR02169 393 KLEKLKREINELKREldrLQEELQRLSEELADLNAAIAGIEAKINELEeekedkaleiKKQEWKLEQLAADLSKYEQELY 472
|
250 260
....*....|....*....|..
gi 1958757793 575 AARQGQQESTEEAASLRQELTQ 596
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAE 494
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
154-683 |
3.87e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 154 EMVRKNLEE--AKQKELEEIQSLHQEQLSSLtQAHQKALDSLTSKAEDLeKSLNSLEMKQ----AGEAKQLTMAQKEAEL 227
Cdd:pfam15921 475 EMLRKVVEEltAKKMTLESSERTVSDLTASL-QEKERAIEATNAEITKL-RSRVDLKLQElqhlKNEGDHLRNVQTECEA 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 228 LRNQLSKTQEELEAQVTLVENLRKYVGEQvppEVPSQARELEQKELldtLKHLKEDRTNLQAtvellqvrvqslthmLAL 307
Cdd:pfam15921 553 LKLQMAEKDKVIEILRQQIENMTQLVGQH---GRTAGAMQVEKAQL---EKEINDRRLELQE---------------FKI 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 308 QEEELTRKIHPLDPLEPEFPKKCRSLLRGWREKVFALmvqlkaQDL-QHRDstkQLRDQVAELQEQVTAQSQEQAILQRA 386
Cdd:pfam15921 612 LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV------KDIkQERD---QLLNEVKTSRNELNSLSEDYEVLKRN 682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 387 LQDKTAQVEverMSTKTLKMELSQAQEARWRQEQQAASAEEQLKFVVSAMNSTQARLQSTMTRVDQAVARIPSLCNRLSY 466
Cdd:pfam15921 683 FRNKSEEME---TTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTN 759
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 467 AVRKVHTIKglmarklalvqlrlescpppepapPPDTDLSLELEQLREERNRLDAELqlsahliqqEVGRVREqgeaehR 546
Cdd:pfam15921 760 ANKEKHFLK------------------------EEKNKLSQELSTVATEKNKMAGEL---------EVLRSQE------R 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 547 HLTEVAQQLEQELQRAQESLASVGQQLeaarqgqQESTEEAASLR-QELTQQQEIYGQALQEKvAEVESRLREQLSDTKR 625
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQDII-------QRQEQESVRLKlQHTLDVKELQGPGYTSN-SSMKPRLLQPASFTRT 872
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958757793 626 RLNEARREQAKAVVSLRQIQHKAtLEKERNQELRRLQDEARKEEGQRLTRRVQELERD 683
Cdd:pfam15921 873 HSNVPSSQSTASFLSHHSRKTNA-LKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDK 929
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
552-681 |
4.24e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 39.42 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 552 AQQLEQELQRAQESLASVGQQLEAA-RQGQQESTEEAASLRQELTQQQEIYGQALQEkVAEVESRLREQLSDTKRRLNEA 630
Cdd:COG1842 53 QKRLERQLEELEAEAEKWEEKARLAlEKGREDLAREALERKAELEAQAEALEAQLAQ-LEEQVEKLKEALRQLESKLEEL 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1958757793 631 RREQAKAVVSLRQiqhkATLEKERNQELRRLQDEARKEEGQRLTRRVQELE 681
Cdd:COG1842 132 KAKKDTLKARAKA----AKAQEKVNEALSGIDSDDATSALERMEEKIEEME 178
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
113-257 |
4.96e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 113 ETSLQQKMRLESQAVELDALavaekagqaeaeglrtaLAGAEMVRKNLEEakqkELEEIQSLHQEQLSSLTQAHQKALDS 192
Cdd:PRK00409 523 ASLEELERELEQKAEEAEAL-----------------LKEAEKLKEELEE----KKEKLQEEEDKLLEEAEKEAQQAIKE 581
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757793 193 LTSKAEDLEKSLNSLEMKQAGE--AKQLTMAQKEaelLRNQLSKTQEELEAQVTLVENLRkyVGEQV 257
Cdd:PRK00409 582 AKKEADEIIKELRQLQKGGYASvkAHELIEARKR---LNKANEKKEKKKKKQKEKQEELK--VGDEV 643
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
573-668 |
5.73e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 573 LEAARQGQQESTEEAASLRQELtqqqEIYGQALQEKVAEVESRLREQLSDTKRR----LNEARREQAKAVVSLRQIQ-HK 647
Cdd:PRK00409 525 LEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQEEEDKLLEEAEKEaqqaIKEAKKEADEIIKELRQLQkGG 600
|
90 100
....*....|....*....|..
gi 1958757793 648 ATLEKERN-QELRRLQDEARKE 668
Cdd:PRK00409 601 YASVKAHElIEARKRLNKANEK 622
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
508-679 |
6.82e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 39.67 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 508 ELEQLREERNRL-DAE-----LQLSAHLIQQEVGRVREQgeaehrhLTEVAQQLEqELQRAQESLASVGQQLEAArqgqQ 581
Cdd:COG0497 207 EEEELEEERRRLsNAEklreaLQEALEALSGGEGGALDL-------LGQALRALE-RLAEYDPSLAELAERLESA----L 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 582 ESTEEAASLRQELTQQQEIYGQALQEkvaeVESRLrEQLSDTKRRLNE------ARREQAKAvvSLRQIQH----KATLE 651
Cdd:COG0497 275 IELEEAASELRRYLDSLEFDPERLEE----VEERL-ALLRRLARKYGVtveellAYAEELRA--ELAELENsderLEELE 347
|
170 180 190
....*....|....*....|....*....|....
gi 1958757793 652 KERNQELRRLQDEA------RKEEGQRLTRRVQE 679
Cdd:COG0497 348 AELAEAEAELLEAAeklsaaRKKAAKKLEKAVTA 381
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
478-686 |
7.18e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 478 MARKLALVQLRLEScPPPEPAPPPDTDLSLELEQLREeRNRLDAELQLSAHLIQQEVGRVREQGEAEHRHLTEVAQQL-- 555
Cdd:pfam17380 344 MERERELERIRQEE-RKRELERIRQEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKve 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 556 ------------EQELQRAQESLAsvgQQLEAARQGQQESTEEAASLRQELTQQQEiygqalQEKVAEVESRLREQLSDT 623
Cdd:pfam17380 422 meqiraeqeearQREVRRLEEERA---REMERVRLEEQERQQQVERLRQQEEERKR------KKLELEKEKRDRKRAEEQ 492
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958757793 624 KRRLNEARREQAKAVVsLRQIQHKATLEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNL 686
Cdd:pfam17380 493 RRKILEKELEERKQAM-IEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRI 554
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
206-413 |
7.75e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 39.47 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 206 SLEMKQAGEAKQLTM--AQKEAELLRNqlsktQEELEAQVTLVENLRKYVGEQvpPEVPSQARELEQKELLDTLKHLKED 283
Cdd:PRK00106 23 SIKMKSAKEAAELTLlnAEQEAVNLRG-----KAERDAEHIKKTAKRESKALK--KELLLEAKEEARKYREEIEQEFKSE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 284 RTNLQATVELLQVRVQSLTHmlalQEEELTRKIHPLDPLEPEFPKKCRSLlrGWREKVFALMVQLKAQDLQHRDSTKQlr 363
Cdd:PRK00106 96 RQELKQIESRLTERATSLDR----KDENLSSKEKTLESKEQSLTDKSKHI--DEREEQVEKLEEQKKAELERVAALSQ-- 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958757793 364 dqvAELQEQVTAQSQEQAILQRALQDKTAQVEVERMSTKTLKMELSQAQE 413
Cdd:PRK00106 168 ---AEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQ 214
|
|
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
515-636 |
7.90e-03 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 39.44 E-value: 7.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757793 515 ERNRLDAELQLSAHLIQQEVgrvrEQGEAEHRHLTEVAQQLEQELQRAQESlasvGQQLEAARQG--QQESTEEAASLRQ 592
Cdd:TIGR01541 22 DEKSLQSRSDEIIALIKLEK----LLEEAEQKALEALKKLAEATASIRAQN----KRQLDRFGLGdkQRERLDARLQIDR 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1958757793 593 ELTQQQEIYGQALQEKVAEVESRLREQLSDTKRRLNEARREQAK 636
Cdd:TIGR01541 94 TFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHA 137
|
|
| |
