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Conserved domains on  [gi|1958756262|ref|XP_038954284|]
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protein FAM229B isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0731 super family cl20862
UPF0731 family; The UPF0731 family of uncharacterized proteins is found in mammals.
 3-80 1.13e-46

UPF0731 family; The UPF0731 family of uncharacterized proteins is found in mammals.


The actual alignment was detected with superfamily member pfam14982:

Pssm-ID: 291643  Cd Length: 78  Bit Score: 143.34  E-value: 1.13e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958756262  3 FRFGTQPRRFPVEGGDSSIELESGLSSSASCNGKETSPNRQLRRCPGSHCLTITDVPITVYATMRKPPAQSSKEMRPK 80
Cdd:pfam14982  1 FRFGTQPRRFPVEGGDSSIGLEPGLSSSAACNGKEISPNRQLRRCPASHCLTITDVPITVYAAMRKPPAQSSKEIHPK 78
 
Name Accession Description Interval E-value
UPF0731 pfam14982
UPF0731 family; The UPF0731 family of uncharacterized proteins is found in mammals.
 3-80 1.13e-46

UPF0731 family; The UPF0731 family of uncharacterized proteins is found in mammals.


Pssm-ID: 291643  Cd Length: 78  Bit Score: 143.34  E-value: 1.13e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958756262  3 FRFGTQPRRFPVEGGDSSIELESGLSSSASCNGKETSPNRQLRRCPGSHCLTITDVPITVYATMRKPPAQSSKEMRPK 80
Cdd:pfam14982  1 FRFGTQPRRFPVEGGDSSIGLEPGLSSSAACNGKEISPNRQLRRCPASHCLTITDVPITVYAAMRKPPAQSSKEIHPK 78
 
Name Accession Description Interval E-value
UPF0731 pfam14982
UPF0731 family; The UPF0731 family of uncharacterized proteins is found in mammals.
 3-80 1.13e-46

UPF0731 family; The UPF0731 family of uncharacterized proteins is found in mammals.


Pssm-ID: 291643  Cd Length: 78  Bit Score: 143.34  E-value: 1.13e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958756262  3 FRFGTQPRRFPVEGGDSSIELESGLSSSASCNGKETSPNRQLRRCPGSHCLTITDVPITVYATMRKPPAQSSKEMRPK 80
Cdd:pfam14982  1 FRFGTQPRRFPVEGGDSSIGLEPGLSSSAACNGKEISPNRQLRRCPASHCLTITDVPITVYAAMRKPPAQSSKEIHPK 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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