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Conserved domains on  [gi|1958747283|ref|XP_038953912|]
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M-phase phosphoprotein 6 isoform X3 [Rattus norvegicus]

Protein Classification

MPP6 family protein( domain architecture ID 10562780)

MPP6 family protein similar to Homo sapiens M-phase phosphoprotein 6, which is a RNA-binding protein that associates with the RNA exosome complex, is involved in the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and plays a role in recruiting the RNA exosome complex to pre-rRNA

Gene Ontology:  GO:0000460|GO:0003723

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MPP6 pfam10175
M-phase phosphoprotein 6; This family represents the M-phase phosphoprotein 6 (MPP6) which is ...
 1-118 4.88e-31

M-phase phosphoprotein 6; This family represents the M-phase phosphoprotein 6 (MPP6) which is involved in the generation of the 3' end of the 5.8S rRNA precursor. MPP6 is required for the integrity maintenance of the rRNA processing complex as it mediates the interaction between MTR4 (RNA helicase) and RRP6 (an 3'-5' exonuclease), and the recruitment of Nuclear VCP-like 2 (NVL2) to the nuclear exosome.


:

Pssm-ID: 462978  Cd Length: 131  Bit Score: 107.90  E-value: 4.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958747283   1 MQRGLDSETKKQLEEEER--KMISDEHWYLDLPELKEKESFIIEEQSFSLCEDLLYGRMSFRGFNPEVEKLMLQMNsKNR 78
Cdd:pfam10175  12 MQRAKDAEEKEQLEEEESdkKLIDESEWVLDGPELLEKKLKIKSEPSYVGCENLIFGRMSFGGFNPEIEKLMKKEE-KKE 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1958747283  79 AEAAEEEETVEVDVSDEEMARRY-ETLVGTIGKKFAKKRDR 118
Cdd:pfam10175  91 EEEEEEEEEKEEDVSDEEMAKRYkSTLVGTISKKFKKKRKR 131
 
Name Accession Description Interval E-value
MPP6 pfam10175
M-phase phosphoprotein 6; This family represents the M-phase phosphoprotein 6 (MPP6) which is ...
 1-118 4.88e-31

M-phase phosphoprotein 6; This family represents the M-phase phosphoprotein 6 (MPP6) which is involved in the generation of the 3' end of the 5.8S rRNA precursor. MPP6 is required for the integrity maintenance of the rRNA processing complex as it mediates the interaction between MTR4 (RNA helicase) and RRP6 (an 3'-5' exonuclease), and the recruitment of Nuclear VCP-like 2 (NVL2) to the nuclear exosome.


Pssm-ID: 462978  Cd Length: 131  Bit Score: 107.90  E-value: 4.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958747283   1 MQRGLDSETKKQLEEEER--KMISDEHWYLDLPELKEKESFIIEEQSFSLCEDLLYGRMSFRGFNPEVEKLMLQMNsKNR 78
Cdd:pfam10175  12 MQRAKDAEEKEQLEEEESdkKLIDESEWVLDGPELLEKKLKIKSEPSYVGCENLIFGRMSFGGFNPEIEKLMKKEE-KKE 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1958747283  79 AEAAEEEETVEVDVSDEEMARRY-ETLVGTIGKKFAKKRDR 118
Cdd:pfam10175  91 EEEEEEEEEKEEDVSDEEMAKRYkSTLVGTISKKFKKKRKR 131
 
Name Accession Description Interval E-value
MPP6 pfam10175
M-phase phosphoprotein 6; This family represents the M-phase phosphoprotein 6 (MPP6) which is ...
 1-118 4.88e-31

M-phase phosphoprotein 6; This family represents the M-phase phosphoprotein 6 (MPP6) which is involved in the generation of the 3' end of the 5.8S rRNA precursor. MPP6 is required for the integrity maintenance of the rRNA processing complex as it mediates the interaction between MTR4 (RNA helicase) and RRP6 (an 3'-5' exonuclease), and the recruitment of Nuclear VCP-like 2 (NVL2) to the nuclear exosome.


Pssm-ID: 462978  Cd Length: 131  Bit Score: 107.90  E-value: 4.88e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958747283   1 MQRGLDSETKKQLEEEER--KMISDEHWYLDLPELKEKESFIIEEQSFSLCEDLLYGRMSFRGFNPEVEKLMLQMNsKNR 78
Cdd:pfam10175  12 MQRAKDAEEKEQLEEEESdkKLIDESEWVLDGPELLEKKLKIKSEPSYVGCENLIFGRMSFGGFNPEIEKLMKKEE-KKE 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1958747283  79 AEAAEEEETVEVDVSDEEMARRY-ETLVGTIGKKFAKKRDR 118
Cdd:pfam10175  91 EEEEEEEEEKEEDVSDEEMAKRYkSTLVGTISKKFKKKRKR 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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