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Conserved domains on  [gi|1958743397|ref|XP_038952897|]
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tRNA-uridine aminocarboxypropyltransferase 2 isoform X2 [Rattus norvegicus]

Protein Classification

DTW domain-containing protein( domain architecture ID 1331)

DTW domain-containing protein similar to tRNA-uridine aminocarboxypropyltransferase that catalyzes the formation of 3-(3-amino-3-carboxypropyl)uridine (acp3U)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DTW super family cl01221
DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function ...
 66-142 4.10e-18

DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.


The actual alignment was detected with superfamily member pfam03942:

Pssm-ID: 470119  Cd Length: 195  Bit Score: 77.69  E-value: 4.10e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958743397  66 RPECSRCSRPQKVCLCPYLPvrPLQIS-THLYIIQHPAEESKVLRTVPLLAACLPPDKCTVkiGRRFSEERLCFALFR 142
Cdd:pfam03942   1 RPRCPRCLRPVEVCLCSLIP--PLVTLpTRVLILQHPNEDGKPTNTGRLLALSLPNSRAFV--GSRFEPDPELLALLA 74
 
Name Accession Description Interval E-value
DTW pfam03942
DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function ...
 66-142 4.10e-18

DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.


Pssm-ID: 461101  Cd Length: 195  Bit Score: 77.69  E-value: 4.10e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958743397  66 RPECSRCSRPQKVCLCPYLPvrPLQIS-THLYIIQHPAEESKVLRTVPLLAACLPPDKCTVkiGRRFSEERLCFALFR 142
Cdd:pfam03942   1 RPRCPRCLRPVEVCLCSLIP--PLVTLpTRVLILQHPNEDGKPTNTGRLLALSLPNSRAFV--GSRFEPDPELLALLA 74
 
Name Accession Description Interval E-value
DTW pfam03942
DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function ...
 66-142 4.10e-18

DTW domain; This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.


Pssm-ID: 461101  Cd Length: 195  Bit Score: 77.69  E-value: 4.10e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958743397  66 RPECSRCSRPQKVCLCPYLPvrPLQIS-THLYIIQHPAEESKVLRTVPLLAACLPPDKCTVkiGRRFSEERLCFALFR 142
Cdd:pfam03942   1 RPRCPRCLRPVEVCLCSLIP--PLVTLpTRVLILQHPNEDGKPTNTGRLLALSLPNSRAFV--GSRFEPDPELLALLA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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