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Conserved domains on  [gi|1958734412|ref|XP_038952344|]
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Golgi membrane protein 1 isoform X3 [Rattus norvegicus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
41-224 1.60e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.74  E-value: 1.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412   41 ELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRiqsshsfqLENVNKLHQDEKAVLVNNITTGEKLIRDL 120
Cdd:TIGR02168  257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR--------LEQQKQILRERLANLERQLEELEAQLEEL 328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  121 QDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSyDLSQCISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKPQA 200
Cdd:TIGR02168  329 ESKLDELAEELAELEEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
                          170       180
                   ....*....|....*....|....
gi 1958734412  201 KLQETVPPKEQTPQEEGDVPRNKS 224
Cdd:TIGR02168  408 RLERLEDRRERLQQEIEELLKKLE 431
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
35-456 4.76e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  35 ASSRSVELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRIQSSHSFQLENVNKLhQDEKAVLVNNITTGE 114
Cdd:COG1196   314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEAL 392
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 115 KLIRDLQDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSYDLSQCISQMKEVKEQcEERIEEVVRKRNEALVSRDDQRQQ 194
Cdd:COG1196   393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA-AEEEAELEEEEEALLELLAELLEE 471
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 195 ALKPQAKLQETVPPKEQTpQEEGDVPRNKSQVPAPSSEVWGLKPHVQNEETNEIQVASEEHGLQLMKASIQEQAAVDGTR 274
Cdd:COG1196   472 AALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 275 VGAEKLDQNIQVPGALLARPEEDSQFPERDQLVIRGGQESQHDQLVVRGGQESQRDQLVFRGGQESQRDQLVFRGGQESQ 354
Cdd:COG1196   551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 355 RDQLVVRGGQESQHDQLVVRGGQESQHDQLVVRGGQESQHDQLVVRGGQELQRAAEEGGDQQNLGDDYNLNENEAEpERE 434
Cdd:COG1196   631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE-REL 709
                         410       420
                  ....*....|....*....|..
gi 1958734412 435 KQAALAGDDRNLSVLNAEAQKR 456
Cdd:COG1196   710 AEAEEERLEEELEEEALEEQLE 731
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
41-224 1.60e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.74  E-value: 1.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412   41 ELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRiqsshsfqLENVNKLHQDEKAVLVNNITTGEKLIRDL 120
Cdd:TIGR02168  257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR--------LEQQKQILRERLANLERQLEELEAQLEEL 328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  121 QDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSyDLSQCISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKPQA 200
Cdd:TIGR02168  329 ESKLDELAEELAELEEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
                          170       180
                   ....*....|....*....|....
gi 1958734412  201 KLQETVPPKEQTPQEEGDVPRNKS 224
Cdd:TIGR02168  408 RLERLEDRRERLQQEIEELLKKLE 431
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
41-204 4.17e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.45  E-value: 4.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412   41 ELQTRIVELEGRVRRAAAERGAvelkknefqgeLQKQREQLDRIQsSHSFQLENVNKLHQ--DEKAVLVNNITTGEKLIR 118
Cdd:COG4913    621 ELEEELAEAEERLEALEAELDA-----------LQERREALQRLA-EYSWDEIDVASAEReiAELEAELERLDASSDDLA 688
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  119 DLQDQLKALQKSYGRLQQDIFQFQKNQTSLEKKfsydlsqcISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKP 198
Cdd:COG4913    689 ALEEQLEELEAELEELEEELDELKGEIGRLEKE--------LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALG 760

                   ....*.
gi 1958734412  199 QAKLQE 204
Cdd:COG4913    761 DAVERE 766
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
35-456 4.76e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  35 ASSRSVELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRIQSSHSFQLENVNKLhQDEKAVLVNNITTGE 114
Cdd:COG1196   314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEAL 392
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 115 KLIRDLQDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSYDLSQCISQMKEVKEQcEERIEEVVRKRNEALVSRDDQRQQ 194
Cdd:COG1196   393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA-AEEEAELEEEEEALLELLAELLEE 471
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 195 ALKPQAKLQETVPPKEQTpQEEGDVPRNKSQVPAPSSEVWGLKPHVQNEETNEIQVASEEHGLQLMKASIQEQAAVDGTR 274
Cdd:COG1196   472 AALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 275 VGAEKLDQNIQVPGALLARPEEDSQFPERDQLVIRGGQESQHDQLVVRGGQESQRDQLVFRGGQESQRDQLVFRGGQESQ 354
Cdd:COG1196   551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 355 RDQLVVRGGQESQHDQLVVRGGQESQHDQLVVRGGQESQHDQLVVRGGQELQRAAEEGGDQQNLGDDYNLNENEAEpERE 434
Cdd:COG1196   631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE-REL 709
                         410       420
                  ....*....|....*....|..
gi 1958734412 435 KQAALAGDDRNLSVLNAEAQKR 456
Cdd:COG1196   710 AEAEEERLEEELEEEALEEQLE 731
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
41-224 1.60e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.74  E-value: 1.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412   41 ELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRiqsshsfqLENVNKLHQDEKAVLVNNITTGEKLIRDL 120
Cdd:TIGR02168  257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR--------LEQQKQILRERLANLERQLEELEAQLEEL 328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  121 QDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSyDLSQCISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKPQA 200
Cdd:TIGR02168  329 ESKLDELAEELAELEEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
                          170       180
                   ....*....|....*....|....
gi 1958734412  201 KLQETVPPKEQTPQEEGDVPRNKS 224
Cdd:TIGR02168  408 RLERLEDRRERLQQEIEELLKKLE 431
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
41-204 4.17e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.45  E-value: 4.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412   41 ELQTRIVELEGRVRRAAAERGAvelkknefqgeLQKQREQLDRIQsSHSFQLENVNKLHQ--DEKAVLVNNITTGEKLIR 118
Cdd:COG4913    621 ELEEELAEAEERLEALEAELDA-----------LQERREALQRLA-EYSWDEIDVASAEReiAELEAELERLDASSDDLA 688
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  119 DLQDQLKALQKSYGRLQQDIFQFQKNQTSLEKKfsydlsqcISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKP 198
Cdd:COG4913    689 ALEEQLEELEAELEELEEELDELKGEIGRLEKE--------LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALG 760

                   ....*.
gi 1958734412  199 QAKLQE 204
Cdd:COG4913    761 DAVERE 766
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
35-204 7.42e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 45.31  E-value: 7.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  35 ASSRSVELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRIQSSHSFQLENVNKLHQDEKAVlvnnittgE 114
Cdd:COG1196   237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL--------E 308
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 115 KLIRDLQDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSyDLSQCISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQ 194
Cdd:COG1196   309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELE-EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
                         170
                  ....*....|
gi 1958734412 195 ALKPQAKLQE 204
Cdd:COG1196   388 LLEALRAAAE 397
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
45-226 1.74e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 1.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412   45 RIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRIQSSHSFQLENVNKLhQDEKAVLVNNITTGEKLIRDLQDQL 124
Cdd:TIGR02168  233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL-QKELYALANEISRLEQQKQILRERL 311
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  125 KALQKSYGRLQQDIFQFQKNQTSLEKKFSyDLSQCISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKPQAKLQE 204
Cdd:TIGR02168  312 ANLERQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
                          170       180
                   ....*....|....*....|..
gi 1958734412  205 TvppKEQTPQEEGDVPRNKSQV 226
Cdd:TIGR02168  391 L---ELQIASLNNEIERLEARL 409
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
41-208 3.12e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.22  E-value: 3.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  41 ELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRIQSshsfQLENVNKlhqdekavlvnnittgEKLIRDL 120
Cdd:COG1579    35 ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE----QLGNVRN----------------NKEYEAL 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 121 QDQLKALQKSYGRLQQDIFQFQKNQTSLEKKfsydlsqcISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKPQA 200
Cdd:COG1579    95 QKEIESLKRRISDLEDEILELMERIEELEEE--------LAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166

                  ....*...
gi 1958734412 201 KLQETVPP 208
Cdd:COG1579   167 ELAAKIPP 174
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
35-456 4.76e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  35 ASSRSVELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRIQSSHSFQLENVNKLhQDEKAVLVNNITTGE 114
Cdd:COG1196   314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEAL 392
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 115 KLIRDLQDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSYDLSQCISQMKEVKEQcEERIEEVVRKRNEALVSRDDQRQQ 194
Cdd:COG1196   393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA-AEEEAELEEEEEALLELLAELLEE 471
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 195 ALKPQAKLQETVPPKEQTpQEEGDVPRNKSQVPAPSSEVWGLKPHVQNEETNEIQVASEEHGLQLMKASIQEQAAVDGTR 274
Cdd:COG1196   472 AALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 275 VGAEKLDQNIQVPGALLARPEEDSQFPERDQLVIRGGQESQHDQLVVRGGQESQRDQLVFRGGQESQRDQLVFRGGQESQ 354
Cdd:COG1196   551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 355 RDQLVVRGGQESQHDQLVVRGGQESQHDQLVVRGGQESQHDQLVVRGGQELQRAAEEGGDQQNLGDDYNLNENEAEpERE 434
Cdd:COG1196   631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE-REL 709
                         410       420
                  ....*....|....*....|..
gi 1958734412 435 KQAALAGDDRNLSVLNAEAQKR 456
Cdd:COG1196   710 AEAEEERLEEELEEEALEEQLE 731
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
41-204 8.68e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 8.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  41 ELQTRIVELEGRVRRAAAERGAVELKKNEFQGELQKQREQLDRIQSSHSFQLENVNKLHQDEKAVlvnnittgEKLIRDL 120
Cdd:COG1196   257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL--------EEELAEL 328
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412 121 QDQLKALQKSYGRLQQDIFQFQKNQTSLEKKfsydLSQCISQMKEVKEQCEERIEEVVRKRNEALVSRDDQRQQALKPQA 200
Cdd:COG1196   329 EEELEELEEELEELEEELEEAEEELEEAEAE----LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404

                  ....
gi 1958734412 201 KLQE 204
Cdd:COG1196   405 LEEA 408
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
35-195 6.79e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.27  E-value: 6.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412   35 ASSRSVELQTRIVELEGRVRRAAAERGAVELKKNEFQGEL-------QKQREQLDRIQSSHSFQLENVNKLHQ------D 101
Cdd:TIGR02168  773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneeaANLRERLESLERRIAATERRLEDLEEqieelsE 852
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958734412  102 EKAVLVNNITTGEKLIRDLQDQLKALQKSYGRLQQDIFQFQKNQTSLEKKFSyDLSQCISQMKEVKEQCEERIEEVVRKR 181
Cdd:TIGR02168  853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRL 931
                          170
                   ....*....|....
gi 1958734412  182 NEALVSRDDQRQQA 195
Cdd:TIGR02168  932 EGLEVRIDNLQERL 945
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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