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Conserved domains on  [gi|1958687457|ref|XP_038950719|]
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mitochondrial import inner membrane translocase subunit Tim23 isoform X2 [Rattus norvegicus]

Protein Classification

Tim17/Tim22/Tim23/Pmp24 domain-containing protein( domain architecture ID 1013)

Tim17/Tim22/Tim23/Pmp24 domain-containing protein similar to Homo sapiens NADH:ubiquinone oxidoreductase subunit A11 and translocase of inner mitochondrial membrane 17B

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIM22 super family cl02381
Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, ...
 46-114 1.97e-31

Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member TIGR00983:

Pssm-ID: 470560  Cd Length: 149  Bit Score: 108.39  E-value: 1.97e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958687457  46 LNVDPRYLVQDTDEFILPTGANKTRGRFELAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWSKPRNV 114
Cdd:TIGR00983   4 LDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLN 72
 
Name Accession Description Interval E-value
3a0801s02tim23 TIGR00983
mitochondrial import inner membrane translocase subunit tim23; [Transport and binding proteins, ...
 46-114 1.97e-31

mitochondrial import inner membrane translocase subunit tim23; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130056  Cd Length: 149  Bit Score: 108.39  E-value: 1.97e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958687457  46 LNVDPRYLVQDTDEFILPTGANKTRGRFELAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWSKPRNV 114
Cdd:TIGR00983   4 LDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLN 72
 
Name Accession Description Interval E-value
3a0801s02tim23 TIGR00983
mitochondrial import inner membrane translocase subunit tim23; [Transport and binding proteins, ...
 46-114 1.97e-31

mitochondrial import inner membrane translocase subunit tim23; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130056  Cd Length: 149  Bit Score: 108.39  E-value: 1.97e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958687457  46 LNVDPRYLVQDTDEFILPTGANKTRGRFELAFFTIGGCCMTGAAFGALNGLRLGLKETQSMPWSKPRNV 114
Cdd:TIGR00983   4 LDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLN 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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