|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
460-1196 |
1.70e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 1.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 460 LVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 536
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 537 KLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK 616
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 617 QLKQTEDSLASEQDHLASKEQELKDvqnvnfllkaEVQKLQALAKEQAAAAHEVEKmqKSVHVKDDKIRLLEEQLQREVA 696
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLED----------RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 697 SRVEELKILNDQNKALQLEVQKLQAVVSE-QPNKDVVEQMKKCIQEKDEKLRTVEELLETG---------LIQV------ 760
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQlQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlseLISVdegyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 761 ---ATREEELNAIRTENSSLTKE-VQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLS 836
Cdd:TIGR02168 538 aieAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 837 VTSQvqeLQNLLrgkeeQVDSMKAALED------------LTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDT 904
Cdd:TIGR02168 618 LSYL---LGGVL-----VVDDLDNALELakklrpgyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 905 KSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKE-ITDLCNELESLKNAVEHQRKKNNDL 983
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 984 REKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDL--LKRLFpavsvpshSNYSEWLRSFEKKAKACMAGPS 1061
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtlLNEEA--------ANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1062 DT-EAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAE---ESRRTIQQLRREREHLE 1137
Cdd:TIGR02168 842 DLeEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEelrELESKRSELRRELEELR 921
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1138 IELEKAEVERSTYVMEVRELKTQLNETHS-KLQNEQTERKKVADDLHKAQQSLNFIHSKI 1196
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
448-974 |
1.73e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 448 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 607
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 608 HKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLL 687
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 688 EEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEkLRTVEELLETgLIQVATREEEL 767
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 768 NAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDgqIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNL 847
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA--LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 848 LRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKS 927
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1958681458 928 QVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVE 974
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1163 |
7.68e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 7.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 606 ELHKVIAEKDKQLKQTED---SLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD 682
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 683 KIRLLEEQLqREVASRVEELKilndqnkalqLEVQKLQAVVSE----QPNKDVVEQMKKCIQEKDEKLRTVEELLE--TG 756
Cdd:PRK03918 253 SKRKLEEKI-RELEERIEELK----------KEIEELEEKVKElkelKEKAEEYIKLSEFYEEYLDELREIEKRLSrlEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 757 LIQVATRE-EELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQL 835
Cdd:PRK03918 322 EINGIEERiKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 836 SVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEE-LENVLKEKDNEIKRIEAILKDTKSDLSK---- 910
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhRKELLEEYTAELKRIEKELKEIEEKERKlrke 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 911 KAELLKEVQDENKLFK--SQVEQLNHQNHQQASFpSQEELQTVISEKEKeITDLCNELESLKNAVEHQRKKNNDLREKNW 988
Cdd:PRK03918 482 LRELEKVLKKESELIKlkELAEQLKELEEKLKKY-NLEELEKKAEEYEK-LKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 989 EAMEALASTEKILQDRVNKTSKERQQQVEAVELEskdlLKRLFPAvsvpshsnYSEWLRsfekkakacmagpsdteaVKV 1068
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEER----LKELEPF--------YNEYLE------------------LKD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1069 LEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKA-EESRRTIQQLRREREHLEIELEKAEVER 1147
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRR 689
|
570
....*....|....*.
gi 1958681458 1148 STYVMEVRELKTQLNE 1163
Cdd:PRK03918 690 EEIKKTLEKLKEELEE 705
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
444-1014 |
3.46e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 3.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 444 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTaEHEAAQQDLQSK 523
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 524 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA--QTSAS 601
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 602 VLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQAlakeqaaaahEVEKMQKSVHVKD 681
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ-------LKKELTNSES----------ENSEKQRELEEKQ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 682 DKIrlleEQLQREVASRVEELKILNDQNKALQLEVQKlqavvSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQva 761
Cdd:TIGR04523 370 NEI----EKLKKENQSYKQEIKNLESQINDLESKIQN-----QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN-- 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 762 trEEELNAIRTENSSLTKEVQELKakqmdqvpfvSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVqLSVTSQV 841
Cdd:TIGR04523 439 --NSEIKDLTNQDSVKELIIKNLD----------NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL-KKLNEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 842 QELQNLLRGKEEQVDSMKAaledltgrekctqvcstpRFEELENVLKEKDNEIKRIEAILKDTKSDLsKKAELLKEVQDE 921
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKE------------------KIEKLESEKKEKESKISDLEDELNKDDFEL-KKENLEKEIDEK 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 922 NKlfksQVEQLNHQnhQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNweamEALASTEKIL 1001
Cdd:TIGR04523 567 NK----EIEELKQT--QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN----EKLSSIIKNI 636
|
570
....*....|...
gi 1958681458 1002 QDRVNKTSKERQQ 1014
Cdd:TIGR04523 637 KSKKNKLKQEVKQ 649
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
319-1011 |
5.82e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 5.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 319 EALKKSNKGELSGLLHQLQEKERLLTATKEDAAATK-ERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIFQNKMH 397
Cdd:PTZ00121 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 398 VSYQETQQMQMKFEQVREQMEAeiahLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQ 477
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADA----AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 478 KKNAEQA--AAQLKVQLQEAERRWEEVQSYIRKRTAEhEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQL 555
Cdd:PTZ00121 1437 KKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEAKKAD-EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 556 MESEQKRASQEESmqiQVQDILEQNEALKAQIQQfhsqiaaqtsasvLAEELHKViaekdKQLKQTEDSLASEQdhlASK 635
Cdd:PTZ00121 1516 KKAEEAKKADEAK---KAEEAKKADEAKKAEEKK-------------KADELKKA-----EELKKAEEKKKAEE---AKK 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 636 EQELKDVQnvnfLLKAEV-QKLQALAKEQAAAAHEVEKMQKSVHV-KDDKIRLLEEQLQR--EVASRVEELKILNDQNKA 711
Cdd:PTZ00121 1572 AEEDKNMA----LRKAEEaKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKK 1647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 712 LQLEVQKlqavvSEQPNKDVVEQMKKCIQE---KDEKLRTVEELLETGLIQVATREEElnairtensslTKEVQELKAKQ 788
Cdd:PTZ00121 1648 KAEELKK-----AEEENKIKAAEEAKKAEEdkkKAEEAKKAEEDEKKAAEALKKEAEE-----------AKKAEELKKKE 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 789 MDQVpfvSLIEDLKKviHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAAL--EDLT 866
Cdd:PTZ00121 1712 AEEK---KKAEELKK--AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVieEELD 1786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 867 GREKCTQVCSTPRFEELEN---VLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQ-DENKLFKSQVEQLNHQNHQQASF 942
Cdd:PTZ00121 1787 EEDEKRRMEVDKKIKDIFDnfaNIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQlEEADAFEKHKFNKNNENGEDGNK 1866
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681458 943 PSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKE 1011
Cdd:PTZ00121 1867 EADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREE 1935
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-146 |
1.30e-08 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 54.74 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 29 MKETLYDDVLAKQKREQKLISTKADKKKAEKKKNKKK------EIQNGTLHESD----SEHVPQDFKLSDASPVEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958681458 99 PAPLSVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPV 146
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEA 126
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
411-657 |
2.45e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 411 EQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlVSELNEKTGKLQQEgvqKKNAEQAAAQLKV 490
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ-----ISALRKDLARLEAE---VEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 491 QLQEAERRWEEVQSYIRK---RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEaeeELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 568 SMQIQVQDILEQNEALKAQIQQFHSQIAaqtSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNF 647
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
250
....*....|
gi 1958681458 648 LLKAEVQKLQ 657
Cdd:TIGR02168 912 ELRRELEELR 921
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
680-1029 |
3.34e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 680 KDDKIRLLEEQ--LQREVASRVEELKILNDQNKALQLEVQKLQAvvSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGL 757
Cdd:TIGR02169 687 KRELSSLQSELrrIENRLDELSQELSDASRKIGEIEKEIEQLEQ--EEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 758 IQVATREEELNAIRTENSSLTKEVQELKAKQMDQvpfvsLIEDLKKVIHEKDGQIKSVEELLevellkvaNKEKTVQLSV 837
Cdd:TIGR02169 765 ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQA-----ELSKLEEEVSRIEARLREIEQKL--------NRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 838 TSQVQELQNLLRGKEEQVDSMKAALEDLTGRekctqvcstprFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKE 917
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGK-----------KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 918 VQDENKLFKSQVEQLNHQNHQQasfpsQEELQTViSEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNwEAMEALAST 997
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSEL-----KAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE-EEIRALEPV 973
|
330 340 350
....*....|....*....|....*....|....*
gi 1958681458 998 E-KILQD--RVNKTSKERQQQVEAVELESKDLLKR 1029
Cdd:TIGR02169 974 NmLAIQEyeEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-1031 |
3.80e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 310 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER---SSVVMARMKERIGTLE 386
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 387 KEHNIFQNKMHVSYQETQQMQMKfeqvREQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 466
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 467 KTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKF--VAKENEVQSLHSKLTDTLVS 544
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSegVKALLKNQSGLSGILGVLSE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 545 KQQLEQRLMQ-----LMESEQKRASQEESMQIQVQDILEQNEALKA-----------QIQQFHSQIAAQTSASVL----- 603
Cdd:TIGR02168 528 LISVDEGYEAaieaaLGGRLQAVVVENLNAAKKAIAFLKQNELGRVtflpldsikgtEIQGNDREILKNIEGFLGvakdl 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 604 ---AEELHKVI-------------AEKDKQLKQT--EDSLASEQDHLAS------------------KEQELKDvqnvnf 647
Cdd:TIGR02168 608 vkfDPKLRKALsyllggvlvvddlDNALELAKKLrpGYRIVTLDGDLVRpggvitggsaktnssileRRREIEE------ 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 648 lLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQP 727
Cdd:TIGR02168 682 -LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 728 NKDVVEQMKkcIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSL----IEDLKK 803
Cdd:TIGR02168 761 AEIEELEER--LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESlerrIAATER 838
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 804 VIHEKDGQIKSVEELLEVELLKVANKEKTVQlSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQvcstPRFEEL 883
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEELRELE----SKRSEL 913
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 884 ENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQdenklfksQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLC 963
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY--------SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681458 964 N-------ELESLKNAVEHQRKKNNDLReknweamEALASTEKILQDrVNKTSKER-QQQVEAVELESKDLLKRLF 1031
Cdd:TIGR02168 986 PvnlaaieEYEELKERYDFLTAQKEDLT-------EAKETLEEAIEE-IDREARERfKDTFDQVNENFQRVFPKLF 1053
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
328-900 |
1.09e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 328 ELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSsvvmARMKERIGTLEKEHnifqnkmhvsyQETQQMQ 407
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR----RELEERLEELEEEL-----------AELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 408 MKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlvselnektgkLQQEGVQKKNAEQAAAQ 487
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 488 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:COG1196 398 LAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 568 SMQIQVQDILEQNEALKAQIQQFHSQIA--AQTSASVLAEELHKVIAEKDKQLKQ-TEDSLASEQDHLASKEQELKDVQN 644
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEAdyEGFLEGVKAALLLAGLRGLAGAVAVlIGVEAAYEAALEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 645 VNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKIlndqnKALQLEVQKLQAVVS 724
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA-----RYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 725 EQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQvpfvsliEDLKKV 804
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL-------EEALLA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 805 IHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLtgrekctqvcstprfEELE 884
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL---------------EELE 766
|
570
....*....|....*.
gi 1958681458 885 NVLKEKDNEIKRIEAI 900
Cdd:COG1196 767 RELERLEREIEALGPV 782
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
581-1192 |
9.74e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 9.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 581 EALKAQIQQfHSQIAAQTSASVLAEELHKVI-AEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQAL 659
Cdd:PTZ00121 1162 DARKAEEAR-KAEDAKKAEAARKAEEVRKAEeLRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 660 AKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQL----EVQKLQAVVSEQPNKDVVEQM 735
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkaeEKKKADEAKKKAEEAKKADEA 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 736 KKCIQEKDEKLRTVEELLETG--LIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPfvsliEDLKKVIHEKdgqik 813
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAkkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA-----DAAKKKAEEK----- 1390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 814 sveellevellKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELenvlKEKDNE 893
Cdd:PTZ00121 1391 -----------KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA----KKKAEE 1455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 894 IKRIEAILKdtKSDLSKKAELLKEVQDENKlfksQVEQLNHQNHQQASfpSQEELQTVISEKEKEitdlcnelESLKNAV 973
Cdd:PTZ00121 1456 AKKAEEAKK--KAEEAKKADEAKKKAEEAK----KADEAKKKAEEAKK--KADEAKKAAEAKKKA--------DEAKKAE 1519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 974 EHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTS-------------KERQQQVEAVELESKDLLKRLFPAVSVPSHS 1040
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEelkkaeekkkaeeAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1041 NYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVL-AETEGILQKLQRSVEQEESKWKVKA 1119
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKkAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1120 -----EESRRTIQQLRREREHLEI--ELEKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNFI 1192
Cdd:PTZ00121 1680 akkaeEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
351-805 |
1.54e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.75 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 351 AATKERCKQLTQEMmteKERSSVVMARMKERIGTLEKEHNiFQNKMHVSYQETQQMQmkfeQVREQMEAEIAHLKQENGI 430
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQYQ----QVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 431 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRT 510
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 511 AEHEAAQQdlqSKFVAKENEVQSLHSKLtdtlvskQQLEqrLMQLmeSEQKRasQEES-MQIQVQDilEQNEALKAQIQQ 589
Cdd:PRK10929 165 TPNTPLAQ---AQLTALQAESAALKALV-------DELE--LAQL--SANNR--QELArLRSELAK--KRSQQLDAYLQA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 590 FHSQIAAQ---------TSASVLAE---ELHKVIAE---KDKQLKQTEDSLASEQDHLASKE-QELKDVQNVNFLLKA-- 651
Cdd:PRK10929 227 LRNQLNSQrqreaeralESTELLAEqsgDLPKSIVAqfkINRELSQALNQQAQRMDLIASQQrQAASQTLQVRQALNTlr 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 652 -EVQKLQALAKEQAAAAHEVEK---MQKSvhvkddkirlleEQLQREVAS-RVEELK---ILNDQNKALQLEVQKLQAVV 723
Cdd:PRK10929 307 eQSQWLGVSNALGEALRAQVARlpeMPKP------------QQLDTEMAQlRVQRLRyedLLNKQPQLRQIRQADGQPLT 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 724 SEQpnkdvveqmkKCIQekDEKLRTVEELLETGLIQVATREEELNAIRTENSSLT---KEVQELKAKQMDQVPFVS---- 796
Cdd:PRK10929 375 AEQ----------NRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNEATHRYLFWVADVSpisl 442
|
490
....*....|....
gi 1958681458 797 -----LIEDLKKVI 805
Cdd:PRK10929 443 sypleIAQDLRRLL 456
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
459-770 |
1.72e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 459 RLVS---ELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQsyirkrtAEHEAAQQDLQSKfvakENEVQSLH 535
Cdd:TIGR02169 640 RMVTlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLK-------RELSSLQSELRRI----ENRLDELS 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 536 SKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTS---------ASVLAEE 606
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEdlhkleealNDLEARL 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 607 LHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQksvhvkdDKIRL 686
Cdd:TIGR02169 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-------ENLNG 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 687 LEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEE 766
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK--IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939
|
....
gi 1958681458 767 LNAI 770
Cdd:TIGR02169 940 KGED 943
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
733-1000 |
2.55e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.85 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 733 EQMKK--CIQEKDEKLRTVEELLETGLIQVATREEELNAIRTEN-SSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKD 809
Cdd:PRK05771 4 VRMKKvlIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 810 gqIKSVEELLEVELLKVANKEKtvqlSVTSQVQELQN---LLRGKEEQVDSMKA---ALEDLTGREKCTQVCSTPRFEEL 883
Cdd:PRK05771 84 --LEELIKDVEEELEKIEKEIK----ELEEEISELENeikELEQEIERLEPWGNfdlDLSLLLGFKYVSVFVGTVPEDKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 884 ENVLKEKDNEIKRIEAILKDT--------KSDLSKKAELLKEVQDENKlfksqveqlnhqnhqqaSFPSQEELQTVISEK 955
Cdd:PRK05771 158 EELKLESDVENVEYISTDKGYvyvvvvvlKELSDEVEEELKKLGFERL-----------------ELEEEGTPSELIREI 220
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681458 956 EKEITDLCNELESLKNAVEHQRKKNNDL-----------REKNwEAMEALASTEKI 1000
Cdd:PRK05771 221 KEELEEIEKERESLLEELKELAKKYLEEllalyeyleieLERA-EALSKFLKTDKT 275
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
670-974 |
3.23e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.47 E-value: 3.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 670 VEKMQKS--VHVKDDKIRLLEEQLqREVASRVEELKilndqnKALQL--EVQKLQAVVSEQPNKDVVEQMKKCIQEKDEK 745
Cdd:PRK05771 22 LEALHELgvVHIEDLKEELSNERL-RKLRSLLTKLS------EALDKlrSYLPKLNPLREEKKKVSVKSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 746 LRTVEElletgliQVATREEELNAIRTENSSLTKEVQELKakqmdqvPFVSLIEDLK-----KVIHEKDGQIKSVEELLE 820
Cdd:PRK05771 95 LEKIEK-------EIKELEEEISELENEIKELEQEIERLE-------PWGNFDLDLSlllgfKYVSVFVGTVPEDKLEEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 821 VELLKVANKEKTVQLSVTSQVqelqnLLRGKEEQVDSMKAALEDLTGREKctqvcSTPRFEELENVLKEKDNEIKRIEAI 900
Cdd:PRK05771 161 KLESDVENVEYISTDKGYVYV-----VVVVLKELSDEVEEELKKLGFERL-----ELEEEGTPSELIREIKEELEEIEKE 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 901 LKDTKSDLSKKAELLKEvqdenklFKSQVEQLNHQNHQQASFPSqEELQT---------VISEKEKEITDLCNELESLKN 971
Cdd:PRK05771 231 RESLLEELKELAKKYLE-------ELLALYEYLEIELERAEALS-KFLKTdktfaiegwVPEDRVKKLKELIDKATGGSA 302
|
...
gi 1958681458 972 AVE 974
Cdd:PRK05771 303 YVE 305
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
358-1024 |
3.84e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 3.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 358 KQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIFQNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSN 437
Cdd:TIGR00618 165 KKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAY 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 438 TTNQLESKQSAElnKLRQDCGRLVSELNEKTGKLqqegvqkknAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ 517
Cdd:TIGR00618 245 LTQKREAQEEQL--KKQQLLKQLRARIEELRAQE---------AVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 518 QDLQSKFVAKENEVQSLHSKLTDTLVSKQQleQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQ 597
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--RRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 598 TSAS-VLAEELHKVIAEKDKQLKQTEdSLASEQDHLASKEQELKDVQNVNFLLKAEVQKlqaLAKEQAAAAHEVEKMQKS 676
Cdd:TIGR00618 392 TQKLqSLCKELDILQREQATIDTRTS-AFRDLQGQLAHAKKQQELQQRYAELCAAAITC---TAQCEKLEKIHLQESAQS 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 677 VHVKDDKIRLLEEQLQREVASRVEELKILNDQN-------KALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTV 749
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDV 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 750 EELLETGLIQVATREEELNAIRTENSSLTKEVQELKAkQMDQVpfVSLIEDLKKVIHEKDGQIKSVEELLEVELLKV--- 826
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE-DIPNL--QNITVRLQDLTEKLSEAEDMLACEQHALLRKLqpe 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 827 ----------ANKEKTVQLSVTSQVQELQNLLRGKEEQ-------------------VDSMKAALEDLTG-REKCTQVCS 876
Cdd:TIGR00618 625 qdlqdvrlhlQQCSQELALKLTALHALQLTLTQERVREhalsirvlpkellasrqlaLQKMQSEKEQLTYwKEMLAQCQT 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 877 TPRfeELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQdeNKLFKSQVEQLNHQNHQQASFPSQ----------- 945
Cdd:TIGR00618 705 LLR--ELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL--KELMHQARTVLKARTEAHFNNNEEvtaalqtgael 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 946 --------------EELQTVISEKEKEITDLCNELESLKNAVEHQRKKN----NDLREKNWEAMEALASTEKILQDRVNK 1007
Cdd:TIGR00618 781 shlaaeiqffnrlrEEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEeeqfLSRLEEKSATLGEITHQLLKYEECSKQ 860
|
730
....*....|....*..
gi 1958681458 1008 TSKERQQQVEAVELESK 1024
Cdd:TIGR00618 861 LAQLTQEQAKIIQLSDK 877
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
603-1180 |
6.37e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.67 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 603 LAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ---ELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQ---KS 676
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERlsiEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAEsdlSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 677 VHVKDDKIRLLEEQLQR-----EVASRVEELKILNDQNKALQLevqklqavvseqpnKDVVEQMKKCIQEKDEKLRTVEE 751
Cdd:PRK01156 268 ELEKNNYYKELEERHMKiindpVYKNRNYINDYFKYKNDIENK--------------KQILSNIDAEINKYHAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 752 LletgliqvATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVEL-------- 823
Cdd:PRK01156 334 L--------QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILkiqeidpd 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 824 --LKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTqVCSTPRFEE-LENVLKEKDNEIKRIEAI 900
Cdd:PRK01156 406 aiKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCP-VCGTTLGEEkSNHIINHYNEKKSRLEEK 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 901 LKDTKSDLSKKAELLKEVQD-ENKLFKSQVEQLNHQNHQQASFPSQeelQTVISEKEKEITDLCNELESLKNavEHQRKK 979
Cdd:PRK01156 485 IREIEIEVKDIDEKIVDLKKrKEYLESEEINKSINEYNKIESARAD---LEDIKIKINELKDKHDKYEEIKN--RYKSLK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 980 NNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVeavelesKDLLKRLFP-AVSVPSHSNYSE-WLRSFEKKAKACM 1057
Cdd:PRK01156 560 LEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQL-------NDLESRLQEiEIGFPDDKSYIDkSIREIENEANNLN 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1058 AGPSDTEAVKVLEHRLKEanemhtllqlECEKYKSVLAETEGIlqklqrsvEQEESKWKVKAEESRRTIQQLRREREHLE 1137
Cdd:PRK01156 633 NKYNEIQENKILIEKLRG----------KIDNYKKQIAEIDSI--------IPDLKEITSRINDIEDNLKKSRKALDDAK 694
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1958681458 1138 IELEKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKKVAD 1180
Cdd:PRK01156 695 ANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGD 737
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
301-1038 |
9.69e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 301 DEALCVVDLLKEK---SGVIKEALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER----SSV 373
Cdd:TIGR02169 208 EKAERYQALLKEKreyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlGEE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 374 VMARMKERIGTLEKEHNIFQNKMHVSYQETQQMQ---MKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAEL 450
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEerlAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-EEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 451 NKLRQDcgrlVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENE 530
Cdd:TIGR02169 367 EDLRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 531 VQSLHSKLtdtlvskQQLEQRLMQL---MESEQKRASQEESMQIQVQDILEQNE----ALKAQIQQFHSQIAAQTSASVL 603
Cdd:TIGR02169 443 KEDKALEI-------KKQEWKLEQLaadLSKYEQELYDLKEEYDRVEKELSKLQrelaEAEAQARASEERVRGGRAVEEV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 604 AEELHKVIAEKDKQLKQTEDSLASEQDHLASK-------EQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKS 676
Cdd:TIGR02169 516 LKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSE 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 677 VHVKDDKIRLLEEQLQRE-----------VASRVEELKILNDQNKALQLE---VQKLQAVV----SEQPNKDVVEQMKKC 738
Cdd:TIGR02169 596 DGVIGFAVDLVEFDPKYEpafkyvfgdtlVVEDIEAARRLMGKYRMVTLEgelFEKSGAMTggsrAPRGGILFSRSEPAE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 739 IQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKqmdqvpfvslIEDLKKVIHEKDGQIKSVEEL 818
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE----------IEQLEQEEEKLKERLEELEED 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 819 LEVELLKVANKEktvqlsvtSQVQELQNLLRGKEEQVDSMKAALEDLTGREkctqvcSTPRFEELENVLKEKDNEIKRIE 898
Cdd:TIGR02169 746 LSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 899 AILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQ-----NHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAV 973
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQiksieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681458 974 EHQRKKNNDLREKNWEAMEALastekilqDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPS 1038
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQI--------EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-644 |
9.75e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 9.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 444 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL--Q 521
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 522 SKFVAKENEVQSLHSKLTDTLV-----SKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA 596
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681458 597 QTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQN 644
Cdd:COG4942 183 LEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
479-1149 |
1.38e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 479 KNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEH-EAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLME 557
Cdd:PTZ00121 1194 RKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAvKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 558 SEQKRASQEESmqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL--ASEQDHLASK 635
Cdd:PTZ00121 1274 AEEARKADELK---KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAeeAKKAAEAAKA 1350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 636 EQELKdvqnvnfllKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQR--EVASRVEELKILNDQNKALQ 713
Cdd:PTZ00121 1351 EAEAA---------ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKaeEDKKKADELKKAAAAKKKAD 1421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 714 LEVQKLQAVVSEQPNKDVVEQMKKC--IQEKDEKLRTVEELLETGliQVATREEELNAIRTEnsslTKEVQELKAKQmdq 791
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEE----AKKADEAKKKA--- 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 792 vpfvsliEDLKKVIHEkdGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKE-EQVDSMKAAlEDLTGREK 870
Cdd:PTZ00121 1493 -------EEAKKKADE--AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEkKKADELKKA-EELKKAEE 1562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 871 CTQVCSTPRFEELENVLKEKDNEIK-----RIEAILKDTKSDLSKKAELLKEVQDEnklfKSQVEQLNhqnhqqasfpSQ 945
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAEEAKkaeeaRIEEVMKLYEEEKKMKAEEAKKAEEA----KIKAEELK----------KA 1628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 946 EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKnweAMEALASTEKILQDRVNKTSKERQQQVEAVELESKD 1025
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK---AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1026 LLKRlfpavsvpshsnysewlRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEmhtllqlecEKYKsvlAETEGILQKLQ 1105
Cdd:PTZ00121 1706 ELKK-----------------KEAEEKKKAEELKKAEEENKIKAEEAKKEAEE---------DKKK---AEEAKKDEEEK 1756
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1958681458 1106 RSVEQEESKWKVKAEESRRTIQQLRREREHLEIELEKAEVERST 1149
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
308-808 |
1.43e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 308 DLLKEKSGVIKEALKKSNKgeLSGLLHQLQEKERLLTATKedaaATKERCKQLTQEMMTEKERSSVvmarMKERIGTLEK 387
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKN--IDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQ----LKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 388 EHNIFQNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDCGRLV-SELNE 466
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELkSELKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 467 KTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQ 546
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 547 QLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQLKQTE 622
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 623 DSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKeqaaaahEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEEL 702
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK-------DLTKKISSLKEKIEKLESEKKEKESKISDLEDEL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 703 KILNDQNKALQLE--VQKLQAVVSEQPN-----KDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENS 775
Cdd:TIGR04523 548 NKDDFELKKENLEkeIDEKNKEIEELKQtqkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
|
490 500 510
....*....|....*....|....*....|...
gi 1958681458 776 SLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEK 808
Cdd:TIGR04523 628 KLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
584-1003 |
2.03e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 584 KAQIQQFHSQIAAQT-SASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKE 662
Cdd:TIGR00606 690 EAELQEFISDLQSKLrLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 663 QAAAAHEVEKMQKSVHVKDDKIRLLEeQLQREvasrveelkiLNDQNKALQLEVQKLQAVVSEQpnkdVVEQMKKCIQEK 742
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLTDVTIME-RFQME----------LKDVERKIAQQAAKLQGSDLDR----TVQQVNQEKQEK 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 743 DEKLRTVEELLE------------------------TGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLI 798
Cdd:TIGR00606 835 QHELDTVVSKIElnrkliqdqqeqiqhlksktnelkSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 799 ED-LKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQ------LSVTSQVQE-LQNLLRGKEEQVDSMKAALEDLTGREK 870
Cdd:TIGR00606 915 ETfLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKnihgymKDIENKIQDgKDDYLKQKETELNTVNAQLEECEKHQE 994
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 871 ctqvcstpRFEELENVLKEKDNEIKRIEAILKDTKSdLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQT 950
Cdd:TIGR00606 995 --------KINEDMRLMRQDIDTQKIQERWLQDNLT-LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDL 1065
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1958681458 951 VISEKEKEITDLCNELESLKNAVEHQRKKN-NDLREKNWEAMEALASTEKILQD 1003
Cdd:TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKELREPQfRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
478-1034 |
2.70e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 478 KKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSkltdtlvSKQQLEQRLMQLME 557
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-------AKKAEEKKKADEAK 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 558 SEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ 637
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 638 ELKDVQNVNFLLKA------EVQKLQALAKEQAAAAHEVEKMQKSVHVK---DDKIRLLEEQLQREVASRVEEL-KILND 707
Cdd:PTZ00121 1389 EKKKADEAKKKAEEdkkkadELKKAAAAKKKADEAKKKAEEKKKADEAKkkaEEAKKADEAKKKAEEAKKAEEAkKKAEE 1468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 708 QNKALQLEVQKLQAVVSEQPNKDVVEQMKKC--IQEKDEKLRTVEELLETgliQVATREEELNAIRTENSS--LTKEVQE 783
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKA---EEAKKADEAKKAEEAKKAdeAKKAEEK 1545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 784 LKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAalE 863
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA--E 1623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 864 DLTGREKCTQvcstprfeELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFP 943
Cdd:PTZ00121 1624 ELKKAEEEKK--------KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 944 SQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEamealaSTEKILQDRVNKTSKERQQQVEAVELES 1023
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE------DKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
|
570
....*....|.
gi 1958681458 1024 KDLLKRLFPAV 1034
Cdd:PTZ00121 1770 AEEIRKEKEAV 1780
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
418-996 |
2.88e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 418 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdcgRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQE 494
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 495 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQ 572
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 573 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKViaeKDKQLKQTEDSLASEQDHLASKEQELKDVQNVnflLKAE 652
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---KKRLTGLTPEKLEKELEELEKAKEEIEEEISK---ITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 653 VQKLQALAKEQAAAAHEVEKMQKSVHV------KDDKIRLLEEQLqREVASRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYT-AELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 727 PNKDVVEQMKKCIQEKDEKLRTVE-ELLETGLIQVATREEELNAIRTENSSLTKEVQELKAkqmdqvpfvsLIEDLKKVI 805
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----------LKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 806 HEkdgqIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSmKAALEDLTGREKCTQVCSTPRFEELEN 885
Cdd:PRK03918 563 KK----LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA-EKELEREEKELKKLEEELDKAFEELAE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 886 VLKEKDNEIKRIEAILKD-TKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQ-QASFPSQEELQTVISEKEKEITDLC 963
Cdd:PRK03918 638 TEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEiKKTLEKLKEELEEREKAKKELEKLE 717
|
570 580 590
....*....|....*....|....*....|...
gi 1958681458 964 NELESLKNAVEHQRKKNNDLREKNWEAMEALAS 996
Cdd:PRK03918 718 KALERVEELREKVKKYKALLKERALSKVGEIAS 750
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
605-959 |
7.25e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 7.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 605 EELHKVIAEKDKQLK--QTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKlQALAKEQAAAAHEVEKMQKSVHVKDD 682
Cdd:TIGR02169 187 ERLDLIIDEKRQQLErlRREREKAERYQALLKEKREYEGYELLKEKEALERQK-EAIERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 683 KIRLLEEQLqREVASRVEEL---KILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMkkciqekDEKLRTVEELLETGLIQ 759
Cdd:TIGR02169 266 RLEEIEQLL-EELNKKIKDLgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDA-------EERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 760 VATREEELNAIRTENSSLTKEVQELKAKQMDqvpFVSLIEDLkkvihEKDGQIKSVEELLEVELLKVANKEKTvqlSVTS 839
Cdd:TIGR02169 338 IEELEREIEEERKRRDKLTEEYAELKEELED---LRAELEEV-----DKEFAETRDELKDYREKLEKLKREIN---ELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 840 QVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstprfeELENVLKEKDNEIKRIEAILKDTKSDLSK-------KA 912
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKIN-----------ELEEEKEDKALEIKKQEWKLEQLAADLSKyeqelydLK 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1958681458 913 ELLKEVQDENKLFKSQVEQLNHQnhQQASFPSQEELQTVISEKEKEI 959
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQ--ARASEERVRGGRAVEEVLKASI 520
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
479-639 |
7.32e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 7.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 479 KNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHskltdtlvskQQLEQRLMQLmeS 558
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----AEELEELL----------AELEAQLEEL--E 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 559 EQKRASQEESMQIQvqdilEQNEALKAQIQQFHSQ----IAAQTSASVLAEELHKVIA-------------EKDKQLKQT 621
Cdd:COG3096 571 EQAAEAVEQRSELR-----QQLEQLRARIKELAARapawLAAQDALERLREQSGEALAdsqevtaamqqllEREREATVE 645
|
170
....*....|....*...
gi 1958681458 622 EDSLASEQDHLASKEQEL 639
Cdd:COG3096 646 RDELAARKQALESQIERL 663
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-599 |
9.44e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 45.90 E-value: 9.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 399 SYQETQQMQMKFEQVREQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTGK 470
Cdd:pfam09787 5 AKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 471 LQQEGVQkknAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD--- 540
Cdd:pfam09787 84 QQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSksq 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681458 541 TLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTS 599
Cdd:pfam09787 161 SSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTS 219
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
710-1020 |
1.07e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 710 KALQLEVQKLQAVVSEqpnkdVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQM 789
Cdd:TIGR02169 180 EEVEENIERLDLIIDE-----KRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 790 DqvpFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQV--------------QELQNLLRGKEEQV 855
Cdd:TIGR02169 255 K---LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIaslersiaekerelEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 856 DSMKAALEDLTGREKCTQVCSTP---RFEELENVLKEKDNEIKRIE---AILKDTKSDLSKKAELLKEVQDENKLFKSQV 929
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDkefAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 930 EQLNHQNHQQASFPSQE---------ELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKnweamealasteki 1000
Cdd:TIGR02169 412 QEELQRLSEELADLNAAiagieakinELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE-------------- 477
|
330 340
....*....|....*....|
gi 1958681458 1001 lQDRVNKTSKERQQQVEAVE 1020
Cdd:TIGR02169 478 -YDRVEKELSKLQRELAEAE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-632 |
1.57e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 310 LKEKSGVI---------KEALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKE 380
Cdd:TIGR02169 648 LFEKSGAMtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 381 rigtLEKEHNIFQNKMHVSYQETQQMQMKFEQVR----------EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL 450
Cdd:TIGR02169 728 ----LEQEEEKLKERLEELEEDLSSLEQEIENVKselkeleariEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 451 NKLRQDCGRLVSELNEKTGKLQQEG------------------VQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAE 512
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKeylekeiqelqeqridlkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 513 HEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEA------LKAQ 586
Cdd:TIGR02169 884 LG----DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAE 959
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1958681458 587 IQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHL 632
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
470-755 |
2.12e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 470 KLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 549
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 550 QRLMQLmesEQKRASQEEsmqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLA--EELHKVIAEK--DKQLKQTEDSL 625
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAaqEKIHVEILEEqlEKLRNELLIRG 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 626 ASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLqreVASRVEELKIL 705
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958681458 706 NDQNKALQLEVQKLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLET 755
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEAS 339
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
482-1187 |
2.76e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 482 EQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQslhsKLTDTLVSKQQLEQRLMQLMESEQK 561
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELK----HLREALQQTQQSHAYLTQKREAQEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 562 RASQEESMQiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELhKVIAEKDKQLKQTEDSLASEQDHLASKEQELKD 641
Cdd:TIGR00618 255 QLKKQQLLK-QLRARIEELRAQEAVLEETQERINRARKAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 642 VQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLE--EQLQREVASRVEELKILndqnKALQLEVQKL 719
Cdd:TIGR00618 333 HVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhiHTLQQQKTTLTQKLQSL----CKELDILQRE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 720 QAVVSEQPNKDVVEQMKKCIQEKDEKLRtveelLETGLIQVATREEELNAIRTENSSLTKEVQELKAK--QMDQVPFVSL 797
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQ-----QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEReqQLQTKEQIHL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 798 IEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQL---SVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQV 874
Cdd:TIGR00618 484 QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpgPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 875 CSTpRFEELENVLKEKDNEIKRIEAILKDTKSDLSKkaELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISE 954
Cdd:TIGR00618 564 QMQ-EIQQSFSILTQCDNRSKEDIPNLQNITVRLQD--LTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 955 KEKEITDLCNELESL-KNAVEHQRKKNNDLREKNWEAMEALASTEKilqdrvnktSKERQQQVEAVELESKDLLKRLFPA 1033
Cdd:TIGR00618 641 LALKLTALHALQLTLtQERVREHALSIRVLPKELLASRQLALQKMQ---------SEKEQLTYWKEMLAQCQTLLRELET 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1034 VSVPSHSNYSEW-LRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1112
Cdd:TIGR00618 712 HIEEYDREFNEIeNASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN 791
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681458 1113 SKWKVKAEESRRTIQQLRREREHLEIELEkaeVERSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQ 1187
Cdd:TIGR00618 792 RLREEDTHLLKTLEAEIGQEIPSDEDILN---LQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
393-916 |
2.99e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 393 QNKMHVSYQetqQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKlRQDCGRLVSELNEKTGKLQ 472
Cdd:pfam15921 255 QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQ-NSMYMRQLSDLESTVSQLR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 473 QEGVQ-KKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ---------SKFVAKENE------------ 530
Cdd:pfam15921 331 SELREaKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQklladlhkrEKELSLEKEqnkrlwdrdtgn 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 531 ---VQSLHSKLTDTLVSKQQLEQrLMQLMESEQKRASQEESMQIQ--------VQDILEQNEALKAQIQQFHSQIAAQT- 598
Cdd:pfam15921 411 sitIDHLRRELDDRNMEVQRLEA-LLKAMKSECQGQMERQMAAIQgkneslekVSSLTAQLESTKEMLRKVVEELTAKKm 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 599 ---SASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQN-----VNFLLKAEVQKLQALAKEQAAA--AH 668
Cdd:pfam15921 490 tleSSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNegdhlRNVQTECEALKLQMAEKDKVIEilRQ 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 669 EVEKMQKSV--HVKDDKIRLLEE-QLQREVASR---VEELKILNDQNKAlqlEVQKLQAVVSeqpnkDVVEQMKKCIQEK 742
Cdd:pfam15921 570 QIENMTQLVgqHGRTAGAMQVEKaQLEKEINDRrleLQEFKILKDKKDA---KIRELEARVS-----DLELEKVKLVNAG 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 743 DEKLRTVEELLEtgliqvaTREEELNAI---RTENSSLTKEVQELKAKqmdqvpFVSLIEDLKKVIHEKDGQIKSVEELL 819
Cdd:pfam15921 642 SERLRAVKDIKQ-------ERDQLLNEVktsRNELNSLSEDYEVLKRN------FRNKSEEMETTTNKLKMQLKSAQSEL 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 820 EVELLKVANKEKTVQLSVTSQVQeLQNLLRGKEEQVDSMKAALEDLtgREKCTQVCSTPRFeelenvLKEKDNEIKRIEA 899
Cdd:pfam15921 709 EQTRNTLKSMEGSDGHAMKVAMG-MQKQITAKRGQIDALQSKIQFL--EEAMTNANKEKHF------LKEEKNKLSQELS 779
|
570
....*....|....*..
gi 1958681458 900 ILKDTKSDLSKKAELLK 916
Cdd:pfam15921 780 TVATEKNKMAGELEVLR 796
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
332-1178 |
3.06e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 332 LLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKErssvvmarmkerigtlekehnifqnkmhvsyqetqqmqmKFE 411
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEE---------------------------------------KLA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 412 QVREQMEAEIAhlKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEgvqKKNAEQAAAQLKVQ 491
Cdd:pfam02463 269 QVLKENKEEEK--EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKE---LKKEKEEIEELEKE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 492 LQEAERRWEEVQsyirkrtaEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRAS--QEESM 569
Cdd:pfam02463 344 LKELEIKREAEE--------EEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQllLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 570 QIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQtedslASEQDHLASKEQELKDVQNVNFLL 649
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE-----LKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 650 KAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK 729
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRAL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 730 DVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKeVQELKAKQMDQVPFVSLIEDLKKVIHEKD 809
Cdd:pfam02463 571 TELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDK-RAKVVEGILKDTELTKLKESAKAKESGLR 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 810 GQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKE 889
Cdd:pfam02463 650 KGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 890 KDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNhqqasfpSQEELQTVISEKEKEITDLCNELESL 969
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL-------AEEREKTEKLKVEEEKEEKLKAQEEE 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 970 KNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSF 1049
Cdd:pfam02463 803 LRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQ 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1050 EKKAKAcmagpSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEES-RRTIQQ 1128
Cdd:pfam02463 883 KLKDEL-----ESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKeENNKEE 957
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1129 LRREREHLEIELEKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKKV 1178
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKL 1007
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
413-590 |
3.07e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 413 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAAAQLKVQL 492
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 493 QEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG3206 236 AEAEARLAALRAQLgsgpdalpellqspviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958681458 554 QLMESEQkrasqeESMQIQVQDILEQNEALKAQIQQF 590
Cdd:COG3206 316 ASLEAEL------EALQAREASLQAQLAQLEARLAEL 346
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
477-686 |
4.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 477 QKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ---DLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 554 QLME--SEQKRASQEESMQIQVQDILEQ----------------NEALKAQIQQFHSQIAA----QTSASVLAEELHKVI 611
Cdd:COG4942 101 AQKEelAELLRALYRLGRQPPLALLLSPedfldavrrlqylkylAPARREQAEELRADLAElaalRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681458 612 AEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRL 686
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
437-726 |
5.34e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 437 NTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQ---EAERRWEEVQSYIRKRtaEH 513
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERmamERERELERIRQEERKR--EL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 514 EAAQQDLQSKFVAKENEVQSLHskltdtlVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQiQQFHSQ 593
Cdd:pfam17380 363 ERIRQEEIAMEISRMRELERLQ-------MERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE-QEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 594 IAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASK--------EQELKDVQNVNFL---LKAEVQKLQALAKE 662
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKlelekekrDRKRAEEQRRKILekeLEERKQAMIEEERK 514
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681458 663 QAAAAHEVEKMQKSVHvKDDKIRLLEEQLQREVasRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:pfam17380 515 RKLLEKEMEERQKAIY-EEERRREAEEERRKQQ--EMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-534 |
6.73e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 322 KKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMmtekerssvvmARMKERIGTLEKEHNIFQNKMHVSYQ 401
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-----------AALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 402 ETQQMQMKFEQVREQMEAEIAHLKQENGI-----------LRDAVSNTT--NQLESKQSAELNKLRQDcgrlVSELNEKT 468
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQylKYLAPARREQAEELRAD----LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681458 469 GKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 534
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-599 |
7.38e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 7.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 411 EQVREQM---EAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQA 484
Cdd:COG3206 185 PELRKELeeaEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 485 AA--QLKVQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQR 551
Cdd:COG3206 263 PViqQLRAQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681458 552 LMQLMESEQKRASQEESMQIQvQDILEQneaLKAQIQQFHSQIAAQTS 599
Cdd:COG3206 343 LAELPELEAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
414-655 |
7.60e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.05 E-value: 7.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 485
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 486 AQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASQ 565
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 566 EESMQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLASEQ----DHLASKEQ 637
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 1958681458 638 ELKDVQNVNFLLKAEVQK 655
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
828-1187 |
8.03e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 8.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 828 NKEKTVQLSV-TSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVcstpRFEELENVLKEKDNEIKRIEAILKDTKS 906
Cdd:TIGR02168 220 AELRELELALlVLRLEELREELEELQEELKEAEEELEELTAELQELEE----KLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 907 DLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREK 986
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELES--KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 987 NWEAMEALastekilqDRVNKTSKERQQQVEAVELEskdllkrlfpavsvpshsnysewlrsfekkakacmagpsdteaV 1066
Cdd:TIGR02168 374 LEELEEQL--------ETLRSKVAQLELQIASLNNE-------------------------------------------I 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1067 KVLEHRLKEANEMHTLLQLECEKYKSVLAETEgiLQKLQRSVEQEESKWKVKAEESRRTIQQLRREREhleiELEKAEVE 1146
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELRE----ELEEAEQA 476
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958681458 1147 RSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQ 1187
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-643 |
8.45e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 462 SELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 541
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 542 LVSKQQ---LEQRLMQLMESEQ-----KRASQEESMQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 605
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958681458 606 ELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQ 643
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
414-537 |
8.51e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQE-------GVQKKNAEQAAA 486
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalGLPLPASAEEFA 383
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1958681458 487 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSK 537
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
386-935 |
1.07e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 386 EKEHNIFQNKMHVSYQET--QQMQMKFEQVREQMEAEIAHLK---QENGILRDAVS--NTTNQLESKQSAELNKLRQDCG 458
Cdd:pfam05483 103 QKENKLQENRKIIEAQRKaiQELQFENEKVSLKLEEEIQENKdliKENNATRHLCNllKETCARSAEKTKKYEYEREETR 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 459 RLVSELNEKTGKLQQEGVQ-KKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSK 537
Cdd:pfam05483 183 QVYMDLNNNIEKMILAFEElRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFL 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 538 LTDTLVSKQQLEQR-------LMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIqqfhsQIAAQTsasvlaeeLHKV 610
Cdd:pfam05483 263 LEESRDKANQLEEKtklqdenLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDL-----QIATKT--------ICQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 611 IAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNvnfLLKAEVQKLQAlakeqaaaahevekmqksvhvKDDKIRLLEEQ 690
Cdd:pfam05483 330 TEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE---LLRTEQQRLEK---------------------NEDQLKIITME 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 691 LQREVASRVEELKILNDQnkalQLEVQKLQAVVSE-QPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNA 769
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNK----EVELEELKKILAEdEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTA 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 770 IRTENSSLTKEVQELKAK-QMDQVPFVSLIEDLKKVIHE--KDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQN 846
Cdd:pfam05483 462 IKTSEEHYLKEVEDLKTElEKEKLKNIELTAHCDKLLLEnkELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 847 LLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFK 926
Cdd:pfam05483 542 KEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALK 621
|
....*....
gi 1958681458 927 SQVEQLNHQ 935
Cdd:pfam05483 622 KKGSAENKQ 630
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
594-754 |
1.22e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 594 IAAQTSASVLAEELHKVIAEKDKQlkqTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQalakeqaaaaHEVEKM 673
Cdd:COG2433 373 IRGLSIEEALEELIEKELPEEEPE---AEREKEHEERELTEEEEEIRR-------LEEQVERLE----------AEVEEL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 674 QKSVHVKDDKIRLLEEQLQRevASRVEELKILNDQnkalqlEVQKLQAvvseqpnkdVVEQMKKCIQEKDEKLRTVEELL 753
Cdd:COG2433 433 EAELEEKDERIERLERELSE--ARSEERREIRKDR------EISRLDR---------EIERLERELEEERERIEELKRKL 495
|
.
gi 1958681458 754 E 754
Cdd:COG2433 496 E 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-729 |
1.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 508 KRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQI 587
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 588 QQFHSQIAAQTSASVLAEELHKV--------IAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQAL 659
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 660 AKEQAAAAHEVEKMQKSVhvkddkiRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK 729
Cdd:COG4942 180 LAELEEERAALEALKAER-------QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
432-1020 |
1.76e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 432 RDAVSNTTNQLESKQSAELNKLrqdCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQsyirkrta 511
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHER---LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 512 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEAL-------K 584
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrleecR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 585 AQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALA 660
Cdd:PRK02224 335 VAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 661 KEQAAAAHEVEKMQKSVHVK----DDKIRLLEEQLQR----------EVASRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:PRK02224 415 EELREERDELREREAELEATlrtaRERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 727 PNK-----DVVEQMKKcIQEKDEKLRTVEELLEtgliqvaTREEELNAIRTENSSLTKEVQELKAKQMDQvpfvsliedl 801
Cdd:PRK02224 495 EERleraeDLVEAEDR-IERLEERREDLEELIA-------ERRETIEEKRERAEELRERAAELEAEAEEK---------- 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 802 kkvihekdgqiksveellevelLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTqvcstprfE 881
Cdd:PRK02224 557 ----------------------REAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAE--------D 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 882 ELENvLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQveqlnhQNHQQAsfpsqEELQTVISEKEKEITD 961
Cdd:PRK02224 607 EIER-LREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAR------EDKERA-----EEYLEQVEEKLDELRE 674
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681458 962 LCNELESLKNAVEHQRKKNNDLREK------NWEAMEALASTEKILQDRVNKTSKE-RQQQVEAVE 1020
Cdd:PRK02224 675 ERDDLQAEIGAVENELEELEELRERrealenRVEALEALYDEAEELESMYGDLRAElRQRNVETLE 740
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
477-596 |
2.17e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.57 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 477 QKKNAEQAAAQLKVQLQEAERRwEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 556
Cdd:COG1566 84 ALAQAEAQLAAAEAQLARLEAE-LGAEAEIAAAEAQLAAAQAQLD----LAQRELERYQALYKKGAVSQQELDEARAALD 158
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958681458 557 ESEQKRASQEESMQIQVQDILEQNE--ALKAQIQQFHSQIAA 596
Cdd:COG1566 159 AAQAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
946-1177 |
2.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 946 EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKnweaMEALASTEKILQDRVNKTSKERQQQVEAVElESKD 1025
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAELE-AQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1026 LLKRLFPAVSVPSHSNYSEWLRSFEkkakacmaGPSDTEAVKVLEHRLKEAnemhtlLQLECEKYKSVLAETEGILQKLQ 1105
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPE--------DFLDAVRRLQYLKYLAPA------RREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958681458 1106 RSVEQEESKwKVKAEESRRTIQQLRREREHLEIELEKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKK 1177
Cdd:COG4942 171 AERAELEAL-LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
479-1030 |
2.69e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 479 KNAEQAAAQLKvQLQEAERRWEEVQSyIRKRTAEHEAAQQDLQSKFVAKEneVQSLHSKLTDTLVSKQQLEQRLMQLMES 558
Cdd:COG4913 242 EALEDAREQIE-LLEPIRELAERYAA-ARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 559 EQKRASQEESMQIQVQDI-LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQ----DHLA 633
Cdd:COG4913 318 LDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERR---RARLEALLAALGLPLPASAEEFAALRaeaaALLE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 634 SKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRlleEQLQREVASRVEELKILNDqnkaLq 713
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR---DALAEALGLDEAELPFVGE----L- 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 714 LEVQKLQA-----------------VVSEQPNKDVVEqmkkCIQEKDEKLRTVEELLETGLIQVATREEELNAI----RT 772
Cdd:COG4913 467 IEVRPEEErwrgaiervlggfaltlLVPPEHYAAALR----WVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLagklDF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 773 ENSSLTKEVQELKAKQMDqVPFVSLIEDLKKviHEK----DGQIKSVEELLEVELLKVA---------NKEKTVQLsvTS 839
Cdd:COG4913 543 KPHPFRAWLEAELGRRFD-YVCVDSPEELRR--HPRaitrAGQVKGNGTRHEKDDRRRIrsryvlgfdNRAKLAAL--EA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 840 QVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELEnvLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQ 919
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID--VASAEREIAELEAELERLDASSDDLAALEEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 920 DENKLFKSQVEQLnhqnhqqasfpsqEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEK 999
Cdd:COG4913 696 ELEAELEELEEEL-------------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
570 580 590
....*....|....*....|....*....|.
gi 1958681458 1000 ILQDRVNKTSKERQQQVEAVELESKDLLKRL 1030
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
882-1145 |
2.86e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 882 ELENVLKEKDNEikRIEAILKDTkSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVisekEKEITD 961
Cdd:PRK05771 32 HIEDLKEELSNE--RLRKLRSLL-TKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKI----EKEIKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 962 LCNELESLKNavehqRKKNNDLREKNWEAMEALASTEKILQD---------RVNKTSKERQQQ---VEAVELESKDLLKR 1029
Cdd:PRK05771 105 LEEEISELEN-----EIKELEQEIERLEPWGNFDLDLSLLLGfkyvsvfvgTVPEDKLEELKLesdVENVEYISTDKGYV 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1030 LFPAVSVPSHSN--YSEwLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANemhtllqlecekyksvlAETEGILQKLqrs 1107
Cdd:PRK05771 180 YVVVVVLKELSDevEEE-LKKLGFERLELEEEGTPSELIREIKEELEEIE-----------------KERESLLEEL--- 238
|
250 260 270
....*....|....*....|....*....|....*...
gi 1958681458 1108 veqeeskwKVKAEESRRTIQQLRrerEHLEIELEKAEV 1145
Cdd:PRK05771 239 --------KELAKKYLEELLALY---EYLEIELERAEA 265
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
839-1029 |
3.01e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 839 SQVQELQNLLRGKEEQVDSMKAALEDLTGRekctqvcstprFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEV 918
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEAR-----------LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 919 QDENklfksQVEQLNHQnhqqasfpsQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTE 998
Cdd:COG1579 86 RNNK-----EYEALQKE---------IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170 180 190
....*....|....*....|....*....|.
gi 1958681458 999 KILQDRVNKTSKERQQQVEAVElesKDLLKR 1029
Cdd:COG1579 152 AELEAELEELEAEREELAAKIP---PELLAL 179
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
880-1147 |
3.91e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 880 FEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEI 959
Cdd:pfam17380 336 YAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKI 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 960 TDLCNELESLKNAVEHQRKknndlreknwEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFpavsvpsh 1039
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQ----------REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKL-------- 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1040 snysEWLRSFEKKAKAcmagpsDTEAVKVLEHRLKEANEM-------HTLLQLECEKYKSVLAETEgilqklQRSVEQEE 1112
Cdd:pfam17380 478 ----ELEKEKRDRKRA------EEQRRKILEKELEERKQAmieeerkRKLLEKEMEERQKAIYEEE------RRREAEEE 541
|
250 260 270
....*....|....*....|....*....|....*
gi 1958681458 1113 SKWKVKAEESRRTIQQLRREREHLEiELEKAEVER 1147
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKATEERS-RLEAMERER 575
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
349-643 |
4.11e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 349 DAAATKERCKQLTQEMMTEKERSSVVMAR----MKERIGTLEKEHNIFQ---NKMhvsyQETQQMQMKFEQVREQMEAEI 421
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYRLVEMAReleeLSARESDLEQDYQAASdhlNLV----QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 422 AHLKQENGILRDAVSNTTNQLESKQSAElnklrQDCGRLVSELNEKTGKL---QQEGVQKKNAEQAAAQLKVQLQEAERR 498
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAE-----EEVDSLKSQLADYQQALdvqQTRAIQYQQAVQALEKARALCGLPDLT 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 499 WEEVQSYIrkrtAEHEAAQQDLQSkfvakenEVQSLHSKLTDTLVSKQQLEQrLMQLME--------------------- 557
Cdd:COG3096 436 PENAEDYL----AAFRAKEQQATE-------EVLELEQKLSVADAARRQFEK-AYELVCkiageversqawqtarellrr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 558 --SEQKRASQEESMQIQVQDI---LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHL 632
Cdd:COG3096 504 yrSQQALAQRLQQLRAQLAELeqrLRQQQNAERLLEEFCQRIGQQLDA---AEELEELLAELEAQLEELEEQAAEAVEQR 580
|
330
....*....|.
gi 1958681458 633 ASKEQELKDVQ 643
Cdd:COG3096 581 SELRQQLEQLR 591
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1059-1187 |
4.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1059 GPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwkVKAEESRRTIQQLRREREH--- 1135
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE--IDVASAEREIAELEAELERlda 682
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681458 1136 -------LEIELEKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQ 1187
Cdd:COG4913 683 ssddlaaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED 741
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
323-528 |
5.04e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 5.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 323 KSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERssvVMARMKERIGTLEKEHNIFQNkMHVSYQE 402
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK---LKMQLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 403 TQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 482
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958681458 483 QAAAQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 528
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
311-639 |
6.92e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 6.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 311 KEKSGVIKEALkkSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMA--RMKERIG----- 383
Cdd:PRK04863 279 NERRVHLEEAL--ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTalRQQEKIEryqad 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 384 TLEKEHNIFQNKMHVsyQETQQMQMKFEQVREQMEAEIAHLKQEngiLRDAVS----NTTNQLESKQSAE-LNKLRQDCG 458
Cdd:PRK04863 357 LEELEERLEEQNEVV--EEADEQQEENEARAEAAEEEVDELKSQ---LADYQQaldvQQTRAIQYQQAVQaLERAKQLCG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 459 RLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQL---QEAERRWEEVQSYIRK------RTAEHEAAQQDLQ--SKFVAK 527
Cdd:PRK04863 432 LPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQLVRKiagevsRSEAWDVARELLRrlREQRHL 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 528 ENEVQSLHSKLTDtLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEA------------------------- 582
Cdd:PRK04863 512 AEQLQQLRMRLSE-LEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEArleslsesvsearerrmalrqqleq 590
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681458 583 LKAQIQQFHSQ----IAAQTSASVLAE-------------ELHKVIAEKDKQLKQTEDSLASEQDHLASKEQEL 639
Cdd:PRK04863 591 LQARIQRLAARapawLAAQDALARLREqsgeefedsqdvtEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
880-1137 |
7.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 880 FEELENVLKEKDnEIKRIEAILKDTKsdlsKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEElQTVISEKEKEI 959
Cdd:COG4913 224 FEAADALVEHFD-DLERAHEALEDAR----EQIELLEPIRELAERYAAARERLAELEYLRAALRLWFA-QRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 960 TDLCNELESLKNAVEHQRKKNNDLREKnweameaLASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLfpavsvpsh 1039
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREE-------LDELEAQIRGNGGDRLEQLEREIERLERELEERERRR--------- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 1040 SNYSEWLRSFEkkakacMAGPSDTEAVKVLEHRLKEAnemhtllqlecekyksvLAETEGILQKLQrsveQEESKWKVKA 1119
Cdd:COG4913 362 ARLEALLAALG------LPLPASAEEFAALRAEAAAL-----------------LEALEEELEALE----EALAEAEAAL 414
|
250
....*....|....*...
gi 1958681458 1120 EESRRTIQQLRREREHLE 1137
Cdd:COG4913 415 RDLRRELRELEAEIASLE 432
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-745 |
8.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 525 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA-------- 596
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElekeiael 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 597 QTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKS 676
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681458 677 VHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAvvSEQPNKDVVEQMKKCIQEKDEK 745
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ--EAEELEALIARLEAEAAAAAER 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
415-787 |
9.71e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 415 EQMEAEIAHLKQENGILRDAvsntTNQLESKQsAELNKLRQDCGRLVSELNEKTGKLQQEGV--QKKNAEQAAAQLKVQL 492
Cdd:COG4717 74 KELEEELKEAEEKEEEYAEL----QEELEELE-EELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 493 QEAERR---WEEVQSYIRKRTAEHEAAQQDLQSKF----VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQ 565
Cdd:COG4717 149 EELEERleeLRELEEELEELEAELAELQEELEELLeqlsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 566 EESMQIQVQDILEQNEALKAQIQQF-----HSQIAAQTSASVLAEELHKVIA----------------EKDKQLKQTEDS 624
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLiaaalLALLGLGGSLLSLILTIAGVLFlvlgllallflllareKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 625 LASEQDHLASKEQE--LKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKD--DKIRLL--------EEQLq 692
Cdd:COG4717 309 ALPALEELEEEELEelLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEEleQEIAALlaeagvedEEEL- 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681458 693 REVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRT 772
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
410
....*....|....*..
gi 1958681458 773 EN--SSLTKEVQELKAK 787
Cdd:COG4717 468 DGelAELLQELEELKAE 484
|
|
| |
