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Conserved domains on  [gi|1958680453|ref|XP_038949391|]
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actin-associated protein FAM107A isoform X1 [Rattus norvegicus]

Protein Classification

protein FAM107A/FAM107B( domain architecture ID 10535143)

protein FAM107A/FAM107B may play a role in tumor development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1151 pfam06625
Protein of unknown function (DUF1151); This family consists of several hypothetical eukaryotic ...
 54-161 8.18e-37

Protein of unknown function (DUF1151); This family consists of several hypothetical eukaryotic proteins of unknown function.


:

Pssm-ID: 461966  Cd Length: 111  Bit Score: 123.14  E-value: 8.18e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958680453  54 SELIKPKKLLNPVKASRSHQELHRELLMNHKRGLGMDRKPELQRVLEHRRRNQLIKKKEEELEAKRMQCPFEQELLRRQQ 133
Cdd:pfam06625   1 DGLIKPKKLANPVKASPSHQELHRELLFNHKRGLVLEQKPELQRVLEKRKRDQVLKQKKEEEEAKRKRSDLEQELLKRQQ 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958680453 134 RLNQLENPPQR---EEDHAPEFIKVRENLRR 161
Cdd:pfam06625  81 RLEELEKEQEKqreEQENNPEFVRVRENLRR 111
 
Name Accession Description Interval E-value
DUF1151 pfam06625
Protein of unknown function (DUF1151); This family consists of several hypothetical eukaryotic ...
 54-161 8.18e-37

Protein of unknown function (DUF1151); This family consists of several hypothetical eukaryotic proteins of unknown function.


Pssm-ID: 461966  Cd Length: 111  Bit Score: 123.14  E-value: 8.18e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958680453  54 SELIKPKKLLNPVKASRSHQELHRELLMNHKRGLGMDRKPELQRVLEHRRRNQLIKKKEEELEAKRMQCPFEQELLRRQQ 133
Cdd:pfam06625   1 DGLIKPKKLANPVKASPSHQELHRELLFNHKRGLVLEQKPELQRVLEKRKRDQVLKQKKEEEEAKRKRSDLEQELLKRQQ 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958680453 134 RLNQLENPPQR---EEDHAPEFIKVRENLRR 161
Cdd:pfam06625  81 RLEELEKEQEKqreEQENNPEFVRVRENLRR 111
 
Name Accession Description Interval E-value
DUF1151 pfam06625
Protein of unknown function (DUF1151); This family consists of several hypothetical eukaryotic ...
 54-161 8.18e-37

Protein of unknown function (DUF1151); This family consists of several hypothetical eukaryotic proteins of unknown function.


Pssm-ID: 461966  Cd Length: 111  Bit Score: 123.14  E-value: 8.18e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958680453  54 SELIKPKKLLNPVKASRSHQELHRELLMNHKRGLGMDRKPELQRVLEHRRRNQLIKKKEEELEAKRMQCPFEQELLRRQQ 133
Cdd:pfam06625   1 DGLIKPKKLANPVKASPSHQELHRELLFNHKRGLVLEQKPELQRVLEKRKRDQVLKQKKEEEEAKRKRSDLEQELLKRQQ 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958680453 134 RLNQLENPPQR---EEDHAPEFIKVRENLRR 161
Cdd:pfam06625  81 RLEELEKEQEKqreEQENNPEFVRVRENLRR 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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