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Conserved domains on  [gi|1958679516|ref|XP_038949020|]
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protein FAM3D isoform X3 [Rattus norvegicus]

Protein Classification

FAM3C domain-containing protein( domain architecture ID 10195373)

FAM3C (FAM3 Metabolism Regulating Signaling Molecule C) domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ILEI_FAM3C cd13940
Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) ...
 9-179 2.64e-107

Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) has been identifed as a protein involved in the epithelial-mesenchymal transition (EMT) and in processes associated with metastasis formation and the progression of cancer. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3C designation. ILEI has been found to be widely expressed, and to be involved in retinal development.


:

Pssm-ID: 260114  Cd Length: 171  Bit Score: 304.19  E-value: 2.64e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516   9 TPKFKCGLSKSCLNNFFAFKISSGAANVVGPSMCFEDEIIMSPVRNNVGRGLNIALVNGTTGRVIRKASFDMYSGEPQPL 88
Cdd:cd13940     1 KPKYKCGLSKPCPEDHFAFRIISGAANVVGPKICFEGKIIMSSVLNNVGRGLNIALVNGETGEVLKTGFFDMYSGDVKPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  89 LDFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAKQLGFRDSWVFVGAKDLRSKSPYEQFLKNNPETNKYEGW 168
Cdd:cd13940    81 LEFLKSIKPGSIVLVASFDDPATKLNDEARKLFAELGSSSIKSLGFRDNWVFVGGKGIKTKSPFEKHIKNDKDTNKYEGW 160

                         170
                  ....*....|.
gi 1958679516 169 PELLELEGCVP 179
Cdd:cd13940   161 PEMIEMEGCIP 171
 
Name Accession Description Interval E-value
ILEI_FAM3C cd13940
Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) ...
 9-179 2.64e-107

Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) has been identifed as a protein involved in the epithelial-mesenchymal transition (EMT) and in processes associated with metastasis formation and the progression of cancer. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3C designation. ILEI has been found to be widely expressed, and to be involved in retinal development.


Pssm-ID: 260114  Cd Length: 171  Bit Score: 304.19  E-value: 2.64e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516   9 TPKFKCGLSKSCLNNFFAFKISSGAANVVGPSMCFEDEIIMSPVRNNVGRGLNIALVNGTTGRVIRKASFDMYSGEPQPL 88
Cdd:cd13940     1 KPKYKCGLSKPCPEDHFAFRIISGAANVVGPKICFEGKIIMSSVLNNVGRGLNIALVNGETGEVLKTGFFDMYSGDVKPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  89 LDFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAKQLGFRDSWVFVGAKDLRSKSPYEQFLKNNPETNKYEGW 168
Cdd:cd13940    81 LEFLKSIKPGSIVLVASFDDPATKLNDEARKLFAELGSSSIKSLGFRDNWVFVGGKGIKTKSPFEKHIKNDKDTNKYEGW 160

                         170
                  ....*....|.
gi 1958679516 169 PELLELEGCVP 179
Cdd:cd13940   161 PEMIEMEGCIP 171
ILEI pfam15711
Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily ...
 58-144 1.70e-36

Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily involved in the process of the transition from epithelial to mesenchymal tissue - EMT - during all of embryonic development, cancer progression, metastasis, and chronic inflammation/fibrosis. ILEI is upregulated exclusively at the level of translation, and abnormal ILEI expression, ie cytoplasmic over-expression instead of vesicular localization, is associated with EMT in human cancerous tissue. In order to induce and maintain the EMT of hepatocytes in a TGF-beta-independent fashion ILEI needs the cooperation of oncogenic Ras.


Pssm-ID: 464817  Cd Length: 89  Bit Score: 121.98  E-value: 1.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  58 RGLNIALVNGTTGRVIRKASFDMYS-GEPQPLLDFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAKQLGFRD 136
Cdd:pfam15711   1 RGINVVVVDACTGKVLDSKSFDTYSySDSSRLANFLKSIPDGSIVLIATKDEASSKLSDEARKALESLGSSKIDNLGFRD 80


                  ....*...
gi 1958679516 137 SWVFVGAK 144
Cdd:pfam15711  81 SWAFIGFK 88
 
Name Accession Description Interval E-value
ILEI_FAM3C cd13940
Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) ...
 9-179 2.64e-107

Interleukin-like EMT inducer; The secreted factor FAM3C or ILEI (InterLeukin-like Emt Inducer) has been identifed as a protein involved in the epithelial-mesenchymal transition (EMT) and in processes associated with metastasis formation and the progression of cancer. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3C designation. ILEI has been found to be widely expressed, and to be involved in retinal development.


Pssm-ID: 260114  Cd Length: 171  Bit Score: 304.19  E-value: 2.64e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516   9 TPKFKCGLSKSCLNNFFAFKISSGAANVVGPSMCFEDEIIMSPVRNNVGRGLNIALVNGTTGRVIRKASFDMYSGEPQPL 88
Cdd:cd13940     1 KPKYKCGLSKPCPEDHFAFRIISGAANVVGPKICFEGKIIMSSVLNNVGRGLNIALVNGETGEVLKTGFFDMYSGDVKPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  89 LDFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAKQLGFRDSWVFVGAKDLRSKSPYEQFLKNNPETNKYEGW 168
Cdd:cd13940    81 LEFLKSIKPGSIVLVASFDDPATKLNDEARKLFAELGSSSIKSLGFRDNWVFVGGKGIKTKSPFEKHIKNDKDTNKYEGW 160

                         170
                  ....*....|.
gi 1958679516 169 PELLELEGCVP 179
Cdd:cd13940   161 PEMIEMEGCIP 171
PANDER_FAM3B cd13939
Pancreatic derived factor; FAM3B or PANDER (PANcreatic DERived factor) has been identifed as a ...
 13-180 1.66e-48

Pancreatic derived factor; FAM3B or PANDER (PANcreatic DERived factor) has been identifed as a regulator of glucose homeostasis and beta cell function. The protein is expressed in the endocrine pancreas and co-secreted with insulin in response to glucose, particularly under conditions of insulin resistance. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3B designation. PANDER induces apoptosis of insulin-secreting beta-cells when over-expressed in vitro. It has been associated with the progression of type 2 diabetes by downregulating beta cell function as well as insulin sensitivity in the liver.


Pssm-ID: 260113  Cd Length: 175  Bit Score: 155.46  E-value: 1.66e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  13 KCGLSKSCLNNFFAFKISSGAANVVGPSMCFEDEIIMSPVRNNVGRGLNIALVNGTTGRVIRKASFDMYSGE-PQPLLDF 91
Cdd:cd13939     4 KCDHWSPCAPNQYAYRIRSGGGKDIMPEICFEDNMLITGKEGNSNRGINIAVVSYETGKVVATKYFDMYEGDfSGPMIEF 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  92 LTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAKQLGFRDSWVFVGAK--DLRSKSPYEQFLKNNPETNKYEGWP 169
Cdd:cd13939    84 INKIPKKSLVFVVTHDDGSTKLKDPAKKAIEDLGSKEIRNLKFRSAWVFIAAKgfQLPDNIEKEKINHSDGSKNRYSGWP 163

                         170
                  ....*....|.
gi 1958679516 170 ELLELEGCVPK 180
Cdd:cd13939   164 AEIQIEGCIPK 174
ILEI pfam15711
Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily ...
 58-144 1.70e-36

Interleukin-like EMT inducer; ILEI is a family of proteins found in vertebrates. It is heavily involved in the process of the transition from epithelial to mesenchymal tissue - EMT - during all of embryonic development, cancer progression, metastasis, and chronic inflammation/fibrosis. ILEI is upregulated exclusively at the level of translation, and abnormal ILEI expression, ie cytoplasmic over-expression instead of vesicular localization, is associated with EMT in human cancerous tissue. In order to induce and maintain the EMT of hepatocytes in a TGF-beta-independent fashion ILEI needs the cooperation of oncogenic Ras.


Pssm-ID: 464817  Cd Length: 89  Bit Score: 121.98  E-value: 1.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  58 RGLNIALVNGTTGRVIRKASFDMYS-GEPQPLLDFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAKQLGFRD 136
Cdd:pfam15711   1 RGINVVVVDACTGKVLDSKSFDTYSySDSSRLANFLKSIPDGSIVLIATKDEASSKLSDEARKALESLGSSKIDNLGFRD 80


                  ....*...
gi 1958679516 137 SWVFVGAK 144
Cdd:pfam15711  81 SWAFIGFK 88
PANDER_like cd13936
Domains similar to the Pancreatic-derived factor; FAM3B or PANDER (PANcreatic DERived factor) ...
 25-178 2.46e-34

Domains similar to the Pancreatic-derived factor; FAM3B or PANDER (PANcreatic DERived factor) has been identifed as a regulator of glucose homeostasis and beta cell function. The protein is expressed in the endocrine pancreas and co-secreted with insulin in response to glucose, particularly under conditions of insulin resistance. The protein had initially been predicted to be a member of the four-helical cytokine family, hence the FAM3B designation. This wider family contains FAM3B and FAM4C, N-terminal domains of N-acetylglucosaminyltransferases, and domains in poorly characterized proteins that have been associated with deafness and the progression of cancer.


Pssm-ID: 260110  Cd Length: 149  Bit Score: 118.21  E-value: 2.46e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  25 FAFKISSGAAnVVGPSMCFEDEIIMSpvRNNVGRGLNIALVNGTTGRVIRKASFDMYS-GEPQPLLDFLTEIPDSTLVLV 103
Cdd:cd13936     1 LEVKIASGGG-GNYAKICVNGGVLFD--GDKSGRGINVVVINGDTGKVIATKTFDTYGaGASNDMIDFLNSVPPGSIVLI 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958679516 104 ASYDDPGTKMNDKIKTLFTNLGSSYAKQLGFRDSWVFVGAKDLRSKSpYEQFLKNNPetNKYEGWPELLELEGCV 178
Cdd:cd13936    78 ATKDDASKSLKDEARRALESLGSSLIQNLGFRDSWAFVGQKGIKRPS-TEQHEISPK--NSSWGGPALIQTCFPL 149
PANDER_GnT-1_2_like cd13937
PANDER-like domain of N-acetylglucosaminyltransferases; O-linked-mannose beta-1, ...
 55-179 2.83e-17

PANDER-like domain of N-acetylglucosaminyltransferases; O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 participates in O-mannosyl glycosylation and may be responsible for creating GlcNAc(beta1-2)Man(alpha1-)O-Ser/Thr moieties on alpha dystroglycan and other O-mannosylated proteins. The domain characterized by this model lies N-terminal to the catalytic domain. Its function has not been determined.


Pssm-ID: 260111  Cd Length: 148  Bit Score: 74.26  E-value: 2.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  55 NVGRGLNIALVNGTTGRVIRKASFDMYS-GEPQPLLDFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAKQLG 133
Cdd:cd13937    28 EAGRGIHVVVLNQATGSVMAQRVFDTYSpGEDEAMILFLNMVSDGRILIFTIKDEGSFHLKDEARSLLKKLGSQKVSKLG 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958679516 134 FRDSWVFVGAKDlrSKSPYEQFLKnNPETNkyeGWPELLELEGCVP 179
Cdd:cd13937   108 WRDMWAMVTRKG--GPVYGEKHSK-SPDLS---SWGEPVLLKAEVP 147
PANDER_like_TMEM2 cd13938
PANDER-like domain of the transmembrane protein TMEM2; TMEM2 has been characterized as a ...
 53-145 5.96e-14

PANDER-like domain of the transmembrane protein TMEM2; TMEM2 has been characterized as a transmembrane protein that maps to the DFNB7-DFNB11 deafness locus on human chromosome 9. It contains a domain similar to the Pancreatic-derived factor PANDER, C-terminal to a glycine rich G8-domain. The function of the PANDER-like domain in TMEM2 has not been characterized.


Pssm-ID: 260112  Cd Length: 168  Bit Score: 66.19  E-value: 5.96e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958679516  53 RNNVGRGLNIALVNGTTGRVIRKASFDMYSG--EPQPLLDFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFTNLGSSYAK 130
Cdd:cd13938    43 RSWGSRGINVRVIDEDTGEVLESDRFDTYESedESKRLAEFLDQIPPGRIVALAVGDEASKNLEDSARKKIRELGSKEID 122

                          90
                  ....*....|....*
gi 1958679516 131 QLGFRDSWVFVGAKD 145
Cdd:cd13938   123 HLGYRQPWAFVGVKG 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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