|
Name |
Accession |
Description |
Interval |
E-value |
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
415-612 |
8.93e-75 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 242.48 E-value: 8.93e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 415 ERERLLRSKRHRGKSLKPPKKH-VVETFFGFDEE-SVDSETlSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLT 492
Cdd:pfam16034 1 ERDKLIRARKQRRKEKKKKLRDmVVETFFGYDEEaSVDSET-SSLSYNTDRTDSTPATPDEDLDEGVAAEEAELRFRQLT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 493 REYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYR 572
Cdd:pfam16034 80 REYQALQRAYALLQEQSGGTLDAEREAKTREQLQAELRRAQSRIEDLESALAQKGQDSKWVEEKQALIRRNQELVEKIRI 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958676036 573 LEMEENQLKSEMQDAKDQNELLEFRVLELEERERRSPAFN 612
Cdd:pfam16034 160 MEQEEGRLKNEIQDARDQNELLEFRILELEERERRSPAIN 199
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
24-607 |
8.76e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 8.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 24 EELRAKLTNIQIEFQQEKSKvgKLRERLQEAKLEREQEQRRhtayISELKAKLhEEKTKELQALREALIRQHEQEAARTA 103
Cdd:COG1196 223 KELEAELLLLKLRELEAELE--ELEAELEELEAELEELEAE----LAELEAEL-EELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 104 kikegELQRLQATLNVLRDGAADkvktalLADAREEARRTFDGERQRLQQEILELKAARKQAEEAlsncmQADKAKAADL 183
Cdd:COG1196 296 -----ELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEELEEELEELEEELEEA-----EEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 184 RAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRE 263
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 264 LppgigdmaelmggqdqHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKN 343
Cdd:COG1196 440 E----------------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 344 EDLLHSIQRMEEKLK--------SLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLE 415
Cdd:COG1196 504 EGFLEGVKAALLLAGlrglagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 416 RERLLRSKRHRGKSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLTREY 495
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 496 QALQRAYALLQEQvggtLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYRLEM 575
Cdd:COG1196 664 GGSRRELLAALLE----AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580 590
....*....|....*....|....*....|..
gi 1958676036 576 EENQLKSEMQDAKDQNELLEFRVLELEERERR 607
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
6-363 |
3.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 6 RSKGEKPETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKaklheEKTKELQ 85
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-----ELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 86 ALREALIRQHEQEAARTAKIKEGELQRLQATLNVLRDGAADKVKTALLADAREEAR----RTFDGERQRLQQEILELKAA 161
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQ 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 162 RKQAEEALSNcMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKE 241
Cdd:TIGR02169 849 IKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 242 ALDEQLVQVKEAERHHSSPKRELPpgigdmaelmggqdqhmderDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKR 321
Cdd:TIGR02169 928 ALEEELSEIEDPKGEDEEIPEEEL--------------------SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR 987
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1958676036 322 sretevqLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRE 363
Cdd:TIGR02169 988 -------LDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
38-246 |
5.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 5.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 38 QQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEGELQRLQATL 117
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 118 NVLRDGAADKVKTALLADAREEARRTFDGERQRLQQEILELKAARKQAEEA-----LSNCMQADKAKAADLRAAYQAHQD 192
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958676036 193 EVHRIKRECERDIRRL----MDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQ 246
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAeeakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
42-825 |
1.06e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 42 SKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLR 121
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD-YLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 122 DGAADKVKTALLADAREEARRtfdgERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKREC 201
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEE----EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 202 ERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDMAELMGGQDQH 281
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 282 MDErdvrrfqlKIAELNSVIRKLEDRNTLLADERNELLKRSRETE--VQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKS 359
Cdd:pfam02463 400 KSE--------EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEesIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 360 LTRENVEMkeklsaqasLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLLRSKRHRGKSLKPPkkhVVE 439
Cdd:pfam02463 472 DLLKETQL---------VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV---AVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 440 TFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLtREYQALQRAYALLQEQVGGTLDAEREA 519
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL-KSIAVLEIDPILNLAQLDKATLEADED 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 520 RTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLM----RTNQDLLEKIYRLEMEENQLKSEMQDAKdqneLLE 595
Cdd:pfam02463 619 DKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAekseVKASLSELTKELLEIQELQEKAESELAK----EEI 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 596 FRVLELEERERRSPAFNLQITTFPENNSSALQLFCHQEGVKGVNISELMKNLDILGDNGNLRNEEQVAVIQAGTVLALCE 675
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 676 KWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAYLVGPEKIQDLEATLYNALQQEPGRRASESLS 755
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 756 ASQREDLQAAVEKVRRQLLRQSREFDSQILRERMELLQQAQQKIREMEGKLELQRRQLKELEEKARQRIS 825
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
415-612 |
8.93e-75 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 242.48 E-value: 8.93e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 415 ERERLLRSKRHRGKSLKPPKKH-VVETFFGFDEE-SVDSETlSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLT 492
Cdd:pfam16034 1 ERDKLIRARKQRRKEKKKKLRDmVVETFFGYDEEaSVDSET-SSLSYNTDRTDSTPATPDEDLDEGVAAEEAELRFRQLT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 493 REYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYR 572
Cdd:pfam16034 80 REYQALQRAYALLQEQSGGTLDAEREAKTREQLQAELRRAQSRIEDLESALAQKGQDSKWVEEKQALIRRNQELVEKIRI 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958676036 573 LEMEENQLKSEMQDAKDQNELLEFRVLELEERERRSPAFN 612
Cdd:pfam16034 160 MEQEEGRLKNEIQDARDQNELLEFRILELEERERRSPAIN 199
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
24-607 |
8.76e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 8.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 24 EELRAKLTNIQIEFQQEKSKvgKLRERLQEAKLEREQEQRRhtayISELKAKLhEEKTKELQALREALIRQHEQEAARTA 103
Cdd:COG1196 223 KELEAELLLLKLRELEAELE--ELEAELEELEAELEELEAE----LAELEAEL-EELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 104 kikegELQRLQATLNVLRDGAADkvktalLADAREEARRTFDGERQRLQQEILELKAARKQAEEAlsncmQADKAKAADL 183
Cdd:COG1196 296 -----ELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEELEEELEELEEELEEA-----EEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 184 RAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRE 263
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 264 LppgigdmaelmggqdqHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKN 343
Cdd:COG1196 440 E----------------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 344 EDLLHSIQRMEEKLK--------SLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLE 415
Cdd:COG1196 504 EGFLEGVKAALLLAGlrglagavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 416 RERLLRSKRHRGKSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLTREY 495
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 496 QALQRAYALLQEQvggtLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYRLEM 575
Cdd:COG1196 664 GGSRRELLAALLE----AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580 590
....*....|....*....|....*....|..
gi 1958676036 576 EENQLKSEMQDAKDQNELLEFRVLELEERERR 607
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
13-541 |
1.20e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 13 ETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEA---------KLEREQEQRRHTAYISELKAKLHEEKTKE 83
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAqaeeyellaELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 84 LQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLRDGAADKVKTALLADAREEARRTFDGERQRLQQEILELKAARK 163
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEE-AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 164 QAEEALSNcMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEAL 243
Cdd:COG1196 404 ELEEAEEA-LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 244 DEQLVQVKEAERHHSSPKRELPPGIGDMAELMGGQDQHMDERDVRRFQLKIAELNSVIRKLE--------DRNTLLADER 315
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALaaalqnivVEDDEVAAAA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 316 NELLKRSRETEVQLKPLvekNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEI 395
Cdd:COG1196 563 IEYLKAAKAGRATFLPL---DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 396 EFLRLQVLEQQHVIDDLSLERERLLRSKRHRGKSLKPPKKHVVEtffgFDEESVDSETLSETSYNTDRTDRTPATPEEDL 475
Cdd:COG1196 640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE----LAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958676036 476 DETTTREEADLRFCQLTREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEK 541
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
44-605 |
5.51e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 5.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 44 VGKLRERLQEAKLEREQEQR---RHTAYISELKAKLHE-----EKTKELQALREALIRQHEQEAARTAKIKEGELQRLQA 115
Cdd:COG1196 167 ISKYKERKEEAERKLEATEEnleRLEDILGELERQLEPlerqaEKAERYRELKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 116 TLNVLRDGAADKVKTALLADAREEARR----TFDGERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQ 191
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRleleELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 192 DEVHRIKREcERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDM 271
Cdd:COG1196 327 ELEEELEEL-EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 272 AELMGGQDQHMDERDVRRFQLKIAELNSVIRKLEDRNTLLAD--ERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHS 349
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAaeEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 350 IQRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLT---------RDEQEIEfLRLQVLEQQHVIDDLSLERERLL 420
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvavligveaAYEAALE-AALAAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 421 RSKRHRG-----------KSLKPPKKHVVETFFGFDEESVDSEtlsetsyntDRTDRTPATPEEDLDETTTREEADLrfc 489
Cdd:COG1196 565 YLKAAKAgratflpldkiRARAALAAALARGAIGAAVDLVASD---------LREADARYYVLGDTLLGRTLVAARL--- 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 490 qLTREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEK 569
Cdd:COG1196 633 -EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
570 580 590
....*....|....*....|....*....|....*.
gi 1958676036 570 IYRLEMEENQLKSEMQDAKDQNELLEFRVLELEERE 605
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
6-363 |
3.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 6 RSKGEKPETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKaklheEKTKELQ 85
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-----ELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 86 ALREALIRQHEQEAARTAKIKEGELQRLQATLNVLRDGAADKVKTALLADAREEAR----RTFDGERQRLQQEILELKAA 161
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQ 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 162 RKQAEEALSNcMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKE 241
Cdd:TIGR02169 849 IKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 242 ALDEQLVQVKEAERHHSSPKRELPpgigdmaelmggqdqhmderDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKR 321
Cdd:TIGR02169 928 ALEEELSEIEDPKGEDEEIPEEEL--------------------SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR 987
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1958676036 322 sretevqLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRE 363
Cdd:TIGR02169 988 -------LDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
38-246 |
5.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 5.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 38 QQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEGELQRLQATL 117
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 118 NVLRDGAADKVKTALLADAREEARRTFDGERQRLQQEILELKAARKQAEEA-----LSNCMQADKAKAADLRAAYQAHQD 192
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEENKI 1730
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958676036 193 EVHRIKRECERDIRRL----MDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQ 246
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAeeakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
44-819 |
5.53e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 5.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 44 VGKLRERLQEA--KLEREQEQ-RRHTAYISELKAKLheeKTKELQAlrealirqheqEAARTAKIKEGELQRLQATLNVL 120
Cdd:TIGR02168 167 ISKYKERRKETerKLERTRENlDRLEDILNELERQL---KSLERQA-----------EKAERYKELKAELRELELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 121 RdgaadkvktallADAREEARRTFDGERQRLQQEILELKAARKQAEEALSNC---MQADKAKAADLRAAYQAHQDEVHRI 197
Cdd:TIGR02168 233 R------------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELrleVSELEEEIEELQKELYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 198 KRECER---DIRRLMDEIKGKERVILALEKELGVQAgqtQRLLLQKEALDEQLVQVKEAERHHSSPKRELPpgigDMAEL 274
Cdd:TIGR02168 301 EQQKQIlreRLANLERQLEELEAQLEELESKLDELA---EELAELEEKLEELKEELESLEAELEELEAELE----ELESR 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 275 MGGQDQHMDE--RDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRE-----TEVQLKPLVEKNKRMNKKNEDLL 347
Cdd:TIGR02168 374 LEELEEQLETlrSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkklEEAELKELQAELEELEEELEELQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 348 HSIQRMEEKLKSLTRENVEMKEKL-SAQASLKRHTSLNDlSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLlrskrhr 426
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALdAAERELAQLQARLD-SLERLQENLEGFSEGVKALLKNQSGLSGILGVL------- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 427 GKSLKPPKKH--VVETFFGFDEESVDSETLSE--------TSYNTDR------TDRTPATPEEDLDETTTREEADLRFCQ 490
Cdd:TIGR02168 526 SELISVDEGYeaAIEAALGGRLQAVVVENLNAakkaiaflKQNELGRvtflplDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 491 LTREYQAlqRAYALLQEQVGGTLDAEREARTREQlqADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQ-----D 565
Cdd:TIGR02168 606 DLVKFDP--KLRKALSYLLGGVLVVDDLDNALEL--AKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERrreieE 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 566 LLEKIYRLEMEENQLKSEMQDAKDQNELLEFRVLELEERERRSpafnlqittfpENNSSALQLFCHQEGVKGVNISELMK 645
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-----------SRQISALRKDLARLEAEVEQLEERIA 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 646 NLDI-LGDNGNLRNEEQVAVIQAGTVLALCEKWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAy 724
Cdd:TIGR02168 751 QLSKeLTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL- 829
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 725 lvgPEKIQDLEATLYNALQQEPGRRASESLSASQREDLQAAVEKVRRQLLRQSREFDSQI--LRERMELLQQAQQKIREM 802
Cdd:TIGR02168 830 ---ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEeaLALLRSELEELSEELREL 906
|
810
....*....|....*..
gi 1958676036 803 EGKLELQRRQLKELEEK 819
Cdd:TIGR02168 907 ESKRSELRRELEELREK 923
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-807 |
1.64e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 174 QADKA-KAADLRAAYQAHQDEVHRIK-RECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVK 251
Cdd:COG1196 208 QAEKAeRYRELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 252 EAERHHSSPKRELppgigdmaelmgGQDQHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKp 331
Cdd:COG1196 288 AEEYELLAELARL------------EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 332 lvEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDD 411
Cdd:COG1196 355 --EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 412 LSLERERLLrskrhrgkslkppkkhvvetffgfdeesvdsetlsetsyntdrtdrtpatpEEDLDETTTREEADLRFCQL 491
Cdd:COG1196 433 LEEEEEEEE---------------------------------------------------EALEEAAEEEAELEEEEEAL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 492 TREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLR-CQAKIEDLEKLLVEKGQDAAWVEEkqVLMRTNQDLLEKI 570
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAdYEGFLEGVKAALLLAGLRGLAGAV--AVLIGVEAAYEAA 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 571 YRLEMEENQLKSEMQDAKDQNELLEFRVLELEERERRSPAFNLQITTFPENNSSALQLFCHQEGVKGVNISELMKNLDIl 650
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL- 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 651 GDNGNLRNEEQVAVIQAGTVLALCEKWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAYLVGPEK 730
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 731 IQDLEATLYNALQQEpGRRASESLSASQREDLQAAVEKVRRQLLRQSREFDSQILRERMEL---LQQAQQKIREMEGKLE 807
Cdd:COG1196 699 LLAEEEEERELAEAE-EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
13-246 |
1.68e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 13 ETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISEL-----KAKLHEEKTKELQAL 87
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLeeaeeELAEAEAEIEELEAQ 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 88 REALIRQHEQEaARTAKIKEGELQRLQATLNVLRDGAADKVKTAllADAREEARRTfDGERQRLQQEILELKAARKQAEE 167
Cdd:TIGR02168 791 IEQLKEELKAL-REALDELRAELTLLNEEAANLRERLESLERRI--AATERRLEDL-EEQIEELSEDIESLAAEIEELEE 866
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 168 ALSNcMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELG----VQAGQTQRLLLQKEAL 243
Cdd:TIGR02168 867 LIEE-LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAqlelRLEGLEVRIDNLQERL 945
|
...
gi 1958676036 244 DEQ 246
Cdd:TIGR02168 946 SEE 948
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
22-255 |
2.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 22 ANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRhtayISELKAKLHEekTKELQALREALIRQHEQEAAR 101
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR----IAALARRIRA--LEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 102 TAKIKEGELQRLQATLNVL-RDGAADKVKTALLADAREEARRtfdgeRQRLQQEILElkAARKQAEEalsncMQADKAKA 180
Cdd:COG4942 95 LRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVR-----RLQYLKYLAP--ARREQAEE-----LRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958676036 181 ADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAER 255
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
56-819 |
5.61e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 56 LEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLRDGAADKVKtaLLAD 135
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE-ELEKLTEEISELEKRLEEIEQ--LLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 136 AREEARRTFDGERQRLQQEILELKAARKQAEEALSNC------MQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLM 209
Cdd:TIGR02169 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKereledAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 210 DEIKGKERVILALEKELgvqagqtqrlllqkEALDEQLvqvKEAERHHSSPKRELPPGIGDMAELMGGQDQHMDERdvRR 289
Cdd:TIGR02169 357 EEYAELKEELEDLRAEL--------------EEVDKEF---AETRDELKDYREKLEKLKREINELKRELDRLQEEL--QR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 290 FQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKE 369
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 370 KLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLE-----------------QQHVIDDLSLERERLLRSKRHRG----- 427
Cdd:TIGR02169 498 QARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSvgeryataievaagnrlNNVVVEDDAVAKEAIELLKRRKAgratf 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 428 -------KSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPAtpeEDLdETTTREEADLRFcqLTREYQALQR 500
Cdd:TIGR02169 578 lplnkmrDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVV---EDI-EAARRLMGKYRM--VTLEGELFEK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 501 AYALlqeqVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLvekgqdaawveekqvlmrtnQDLLEKIYRLEMEENQL 580
Cdd:TIGR02169 652 SGAM----TGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL--------------------SSLQSELRRIENRLDEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 581 KSEMQDAKDQNELLEFRVLELEERERRSpafnlqittfpennssalqlfchqegvkgvniSELMKNLdilgdngnlrnee 660
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKL--------------------------------KERLEEL------------- 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 661 qvaviqagtvlalcEKWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAYLvgpEKIQDLEATLYN 740
Cdd:TIGR02169 743 --------------EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI---PEIQAELSKLEE 805
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 741 ALQQEPGRRASESLSASQREDLQAAVEKVRRQLLRQSREFDSQI--LRERMELLQQaqqKIREMEGKLELQRRQLKELEE 818
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIksIEKEIENLNG---KKEELEEELEELEAALRDLES 882
|
.
gi 1958676036 819 K 819
Cdd:TIGR02169 883 R 883
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
42-825 |
1.06e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 42 SKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEgELQRLQATLNVLR 121
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD-YLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 122 DGAADKVKTALLADAREEARRtfdgERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKREC 201
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEE----EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 202 ERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDMAELMGGQDQH 281
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 282 MDErdvrrfqlKIAELNSVIRKLEDRNTLLADERNELLKRSRETE--VQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKS 359
Cdd:pfam02463 400 KSE--------EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEesIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 360 LTRENVEMkeklsaqasLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLLRSKRHRGKSLKPPkkhVVE 439
Cdd:pfam02463 472 DLLKETQL---------VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV---AVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 440 TFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLtREYQALQRAYALLQEQVGGTLDAEREA 519
Cdd:pfam02463 540 NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL-KSIAVLEIDPILNLAQLDKATLEADED 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 520 RTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLM----RTNQDLLEKIYRLEMEENQLKSEMQDAKdqneLLE 595
Cdd:pfam02463 619 DKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAekseVKASLSELTKELLEIQELQEKAESELAK----EEI 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 596 FRVLELEERERRSPAFNLQITTFPENNSSALQLFCHQEGVKGVNISELMKNLDILGDNGNLRNEEQVAVIQAGTVLALCE 675
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 676 KWLKQIEGTEAALTQKMMDLEKEKDQFSRQKGYLEQELDYRKEALDQAYLVGPEKIQDLEATLYNALQQEPGRRASESLS 755
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 756 ASQREDLQAAVEKVRRQLLRQSREFDSQILRERMELLQQAQQKIREMEGKLELQRRQLKELEEKARQRIS 825
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
27-213 |
1.07e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 27 RAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIK 106
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 107 --EGELQRLQATLNVLRDGAAD-KVKTALLADAREEARRTFDGERQRLQQ-EILELKAARKQAEEALSNcmQADKAKAAD 182
Cdd:COG4913 689 alEEQLEELEAELEELEEELDElKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAA--ALGDAVERE 766
|
170 180 190
....*....|....*....|....*....|.
gi 1958676036 183 LRAAYQAHQDEVHRIKRECERDIRRLMDEIK 213
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEELERAMRAFN 797
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
25-362 |
2.89e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 25 ELRAKLTNIQIEFQ--QEKSKVGKLrERLQEAKLEREQEQRRHTAYISELKAKLhEEKTKELQALREalirqheqeaart 102
Cdd:TIGR02168 217 ELKAELRELELALLvlRLEELREEL-EELQEELKEAEEELEELTAELQELEEKL-EELRLEVSELEE------------- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 103 akikegELQRLQATLNVLRDGAADKVKTALLADAREEARRTfdgERQRLQQEILELKAARKQAEEALsNCMQADKAKAAD 182
Cdd:TIGR02168 282 ------EIEELQKELYALANEISRLEQQKQILRERLANLER---QLEELEAQLEELESKLDELAEEL-AELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 183 LRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERhhsspkr 262
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE------- 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 263 elppgigdmaelmgGQDQHMDERDVRRFQLKIAELNSVIRKLEDRNtllaDERNELLKRSRETEVQLKPLVEKNKRMNKK 342
Cdd:TIGR02168 425 --------------ELLKKLEEAELKELQAELEELEEELEELQEEL----ERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340
....*....|....*....|
gi 1958676036 343 NEDLLHSIQRMEEKLKSLTR 362
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSE 506
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
22-169 |
3.76e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 22 ANEELRAKLT--NIQIEFQQEKSKVGKLRE---RLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALrEALIRQHE 96
Cdd:COG4913 273 ELEYLRAALRlwFAQRRLELLEAELEELRAelaRLEAELERLEARLDALREELDELEAQIRGNGGDRLEQL-EREIERLE 351
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958676036 97 QEAARtakiKEGELQRLQATLNVLrdGAADKVKTALLADAREEARR---TFDGERQRLQQEILELKAARKQAEEAL 169
Cdd:COG4913 352 RELEE----RERRRARLEALLAAL--GLPLPASAEEFAALRAEAAAlleALEEELEALEEALAEAEAALRDLRREL 421
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
297-428 |
3.89e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 297 LNSVIRKLEDRntLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKEKLSAQAS 376
Cdd:COG2433 378 IEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARS 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1958676036 377 LKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLS--LERERLLRSKRHRGK 428
Cdd:COG2433 456 EERREIRKDREISRLDREIERLERELEEERERIEELKrkLERLKELWKLEHSGE 509
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
23-246 |
5.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 23 NEELRAKLTNIQIEFQQEKskVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAART 102
Cdd:COG3206 165 NLELRREEARKALEFLEEQ--LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 103 AKIKEGELQRLQATLNVLRDGAADKVKTALLADAREEARrtfdgERQRLQQEILELKAARKQAEEALSNCMQADKAKAAD 182
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAE-----LSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958676036 183 LRAAYQAHQDEVHRIKREcERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQ 246
Cdd:COG3206 318 LEAELEALQAREASLQAQ-LAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
178-369 |
1.73e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 178 AKAADLRAaYQAHQDEVHRIKRECERDIRRlmDEIKgkervilalekeLGVQAGQTQRLLLQKEALDEQLVQVKEAERHH 257
Cdd:COG2433 337 ALAAALKA-YDAYKNKFERVEKKVPPDVDR--DEVK------------ARVIRGLSIEEALEELIEKELPEEEPEAEREK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 258 SSPKRELPPGIGDMAELMGGQDQHMDErdVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETevqlkplveknK 337
Cdd:COG2433 402 EHEERELTEEEEEIRRLEEQVERLEAE--VEELEAELEEKDERIERLERELSEARSEERREIRKDREI-----------S 468
|
170 180 190
....*....|....*....|....*....|..
gi 1958676036 338 RMNKKNEDLLHSIQRMEEKLKSLTRENVEMKE 369
Cdd:COG2433 469 RLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-360 |
1.89e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 56 LEREQEQRRHTAYISELKAKLHEeKTKELQALREALirQHEQEAARTAKIKEGELQRLqatlnvLRDGAADKVKTALLAD 135
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAE-LEKALAELRKEL--EELEEELEQLRKELEELSRQ------ISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 136 AREEARRTFDGERQRLQQEILELKAARKQAEEALsncmQADKAKAADLRAAYQAHQDEV---HRIKRECERDIRRLMDEI 212
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEEL----AEAEAEIEELEAQIEQLKEELkalREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 213 KGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAerhhsspkrelppgigdmaelmggqdqhmderdvrrfql 292
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE--------------------------------------- 860
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958676036 293 kIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSL 360
Cdd:TIGR02168 861 -IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
82-255 |
4.53e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 82 KELQALREALIRQHEQ-----------EAARTAKIKEGELQRLQATLNVLRDGAadkvKTALLADAREEARRtfdgERQR 150
Cdd:COG4913 235 DDLERAHEALEDAREQiellepirelaERYAAARERLAELEYLRAALRLWFAQR----RLELLEAELEELRA----ELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 151 LQQEILELKAARKQAEEalsncmqadkakaaDLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALE---KELG 227
Cdd:COG4913 307 LEAELERLEARLDALRE--------------ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEallAALG 372
|
170 180
....*....|....*....|....*....
gi 1958676036 228 VQAGQTQR-LLLQKEALDEQLVQVKEAER 255
Cdd:COG4913 373 LPLPASAEeFAALRAEAAALLEALEEELE 401
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
8-225 |
7.34e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 8 KGEKPETETDSVQMANEELRaKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRhtayISELKAKLHEEKTKELQAL 87
Cdd:pfam17380 359 KRELERIRQEEIAMEISRMR-ELERLQMERQQKNERVRQELEAARKVKILEEERQRK----IQQQKVEMEQIRAEQEEAR 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 88 REALIRQHEQEAARTAKIKEGELQRlQATLNVLRDGAADKVKTALLADAREEARRTFDGERQR-LQQEILELKAA---RK 163
Cdd:pfam17380 434 QREVRRLEEERAREMERVRLEEQER-QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKiLEKELEERKQAmieEE 512
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958676036 164 QAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKE 225
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERE 574
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
34-253 |
7.69e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 39.93 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 34 QIEFQQEKSKVGKLRERLQEAKLEREQEQRrhtayisELKAKLHEEKTKE--LQALREALIRQHEQEAARTAK------- 104
Cdd:PRK05035 440 AIEQEKKKAEEAKARFEARQARLEREKAAR-------EARHKKAAEARAAkdKDAVAAALARVKAKKAAATQPivikaga 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 105 -------IKEGELQRLQATLNVLRDGAAD----------------KVKTALLADAREEARRTFDGERQRLQQEILELKaA 161
Cdd:PRK05035 513 rpdnsavIAAREARKAQARARQAEKQAAAaadpkkaavaaaiaraKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAK-A 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 162 RKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKE 241
Cdd:PRK05035 592 KKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEE 671
|
250
....*....|..
gi 1958676036 242 ALDEQLVQVKEA 253
Cdd:PRK05035 672 AEDPKKAAVAAA 683
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
24-212 |
9.72e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 24 EELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEektkELQA-LREALIRQHEQEAART 102
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA----LLEErFAAALGDAVERELREN 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958676036 103 AkikEGELQRLQATLNVLRDGAADKVKT--------ALLADAREEARRTFDGERQRLQQEilELKAARKQAEEALSNCMQ 174
Cdd:COG4913 771 L---EERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADLESLPEYLALLDRLEED--GLPEYEERFKELLNENSI 845
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958676036 175 ADKAkaadlraayqahqDEVHRIKREcERDIRRLMDEI 212
Cdd:COG4913 846 EFVA-------------DLLSKLRRA-IREIKERIDPL 869
|
|
| |
