|
Name |
Accession |
Description |
Interval |
E-value |
| NAC_NACA |
cd22054 |
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent ... |
1560-1607 |
1.60e-23 |
|
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent polypeptide-associated complex (NAC) is a complex, conserved from archaea to human, that plays an important role in co translational targeting of nascent polypeptides to the endoplasmic reticulum (ER). In eukaryotes, under physiological conditions, the complex is a stable heterodimer of the NAC alpha subunit and the NAC beta subunit, also known as basal transcription factor 3b (BTF3b). An imbalance of the relative concentrations has been observed in diseases, like Alzheimer's, AIDS, and ulcerative colitis. NAC alpha consists of a NAC domain, also present in BTF3, and a unique C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 409233 Cd Length: 48 Bit Score: 94.55 E-value: 1.60e-23
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1958675534 1560 GLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDL 1607
Cdd:cd22054 1 GLKPVPGVTRVTIKKSKNILFVINKPDVYKSPGSDTYIVFGEAKIEDL 48
|
|
| NAC |
pfam01849 |
NAC domain; |
1551-1604 |
6.14e-21 |
|
NAC domain;
Pssm-ID: 426474 Cd Length: 54 Bit Score: 87.52 E-value: 6.14e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1958675534 1551 KARKAMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKI 1604
Cdd:pfam01849 1 KLQKALKKLGLKPIPGVEEVNIFKSDGKVLVFNNPKVQKSPGSNTYVVFGEAEE 54
|
|
| UBA_NACAD |
cd14416 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha ... |
1655-1696 |
7.77e-21 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD); The subfamily includes a group of uncharacterized proteins mainly found in vertebrates. Their biological function remains unknown, but they show high sequence similarity to the nascent polypeptide-associated complex (NAC) subunit alpha (NACA) that exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. Like NACA, NACAD contains an NAC domain and a C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 270599 Cd Length: 44 Bit Score: 87.05 E-value: 7.77e-21
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1958675534 1655 AGLEPRDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELTM 1696
Cdd:cd14416 3 TGLEVRDIELVMAQANVSRAKAVRALRHNNNDIVNAIMELTM 44
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
688-1044 |
1.01e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 67.06 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 688 PEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLtlrSQQDEEIVTVPQESPTASSVPLQSSDPTSEPE 767
Cdd:PRK14949 377 PEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQV---QAANAEAVAEADASAEPADTVEQALDDESELL 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 768 P-----EAVLTLRSQ-----QDEEIVTVPQESPTASSVPLQSSDP----TSEPEPEAVLTLRSQQDEEIVTVPQESPTAS 833
Cdd:PRK14949 454 AalnaeQAVILSQAQsqgfeASSSLDADNSAVPEQIDSTAEQSVVnpsvTDTQVDDTSASNNSAADNTVDDNYSAEDTLE 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 834 SVPLQSSDPTSEPEP--------------EAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPE---------- 889
Cdd:PRK14949 534 SNGLDEGDYAQDSAPldayqddyvafsseSYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAasladddild 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 890 AVLTLR----------SQQDE----EIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASSV 955
Cdd:PRK14949 614 AVLAARdsllsdldalSPKEGdgkkSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALA 693
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 956 PLQSSDPTSEPE----------PEAVLTLRSQQDKEIVTVPQESPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGVTI 1025
Cdd:PRK14949 694 SGSAPAPPPVPDpydrppweeaPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQ 773
|
410
....*....|....*....
gi 1958675534 1026 PQVAPVALPSPLQGLDSTS 1044
Cdd:PRK14949 774 TSSEVQDTELNLVLLSSGS 792
|
|
| EGD2 |
COG1308 |
Transcription factor homologous to NACalpha-BTF3 [Transcription]; |
1550-1695 |
1.32e-09 |
|
Transcription factor homologous to NACalpha-BTF3 [Transcription];
Pssm-ID: 440919 [Multi-domain] Cd Length: 116 Bit Score: 57.55 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1550 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKIEDLsqqvhKAAAEKFKVPSEs 1625
Cdd:COG1308 8 RKMKQMMKQMGIKVEEiDAEEVIIRtKDKEI--VFENPQVtvMKAQGQETYQIVGEPEEVEK-----GAEEAEVEIPEE- 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1626 salvpelapgprvrpeceeqeeeeeeveeagleprDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:COG1308 80 -----------------------------------DVELVAEQTGVSEEEAREALEEANGDLAEAILKLE 114
|
|
| nac |
PRK06369 |
nascent polypeptide-associated complex protein; Reviewed |
1550-1695 |
9.28e-09 |
|
nascent polypeptide-associated complex protein; Reviewed
Pssm-ID: 235786 [Multi-domain] Cd Length: 115 Bit Score: 54.87 E-value: 9.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1550 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKiedlsqQVHKAAAEKFKVPSEs 1625
Cdd:PRK06369 8 RKMKQMMKQMGIDVEElDVEEVIIRlKDKEI--VFENPQVtvMDAQGQKTYQIVGEPE------EVEKEAEKEVEIPEE- 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1626 salvpelapgprvrpeceeqeeeeeeveeagleprDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:PRK06369 79 -----------------------------------DIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113
|
|
| HYPK_UBA |
pfam19026 |
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK ... |
1656-1695 |
9.27e-08 |
|
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK protein and its homologs. This domain in HYPK mediates a protein interaction with the Naa15 C-terminus.
Pssm-ID: 436907 Cd Length: 41 Bit Score: 49.86 E-value: 9.27e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1958675534 1656 GLEPRDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:pfam19026 2 KVKKEDVELIMTELEVSKAKAERALREHGGDVVAALRALL 41
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
839-1385 |
4.59e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.78 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 839 SSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSD--PTSEPEPEAVLTLRSQQDEEIVTVPQESPTVSSVP 916
Cdd:PHA03247 2544 ASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRArrPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 917 LQ------SSDPTSEPEPEVAATLRSQQDEEIVTVPQESP----TASSVPLQSSDPTSEPEPEAVLtlrsqqdkeivtvP 986
Cdd:PHA03247 2624 PDppppspSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRprraRRLGRAAQASSPPQRPRRRAAR-------------P 2690
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 987 QESPTASSV--PLQSSDPTSEPEPEVAATPEPQQPEEGVTIPQVAPVALPSPLQGLDSTSDLESVVAGTMESWQDEGIAT 1064
Cdd:PHA03247 2691 TVGSLTSLAdpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1065 ATQDmPVVAPPPLGGIESTSDPELSAQDTPQALQREAGYTPGTKPSVSEAHQELGVALGPRPVPKEQDAKPPHSELPASD 1144
Cdd:PHA03247 2771 PPAA-PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1145 QAQQNGSEPVVKNDNLGvPGEGSGPTLSTKTSEPLSCMGEKVTENLAAPKPGACLEAHDGAKTHSPQRQASRAKNKCGRG 1224
Cdd:PHA03247 2850 LPLGGSVAPGGDVRRRP-PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1225 PKPPGQGKGSKSTASQGTTETFKAhsaarsetSQPQLMNSAGEGTSLSVKDSSGPRLPVAVSVQSKLGSCPGSPARATCT 1304
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGA--------GEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHS 3000
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1305 LSRVYSEETARCAPPFQHPEPVLGLGSGEQPKVTLGTLNLSS--------ENSAGDLLTTPQNRLLDPDPDPSAPSALNR 1376
Cdd:PHA03247 3001 LSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLfdsdsersDLEALDPLPPEPHDPFAHEPDPATPEAGAR 3080
|
570
....*....|
gi 1958675534 1377 AFQSSP-GPP 1385
Cdd:PHA03247 3081 ESPSSQfGPP 3090
|
|
| TIGR00264 |
TIGR00264 |
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its ... |
1661-1694 |
2.07e-04 |
|
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator. [Unknown function, General]
Pssm-ID: 272988 [Multi-domain] Cd Length: 116 Bit Score: 42.63 E-value: 2.07e-04
10 20 30
....*....|....*....|....*....|....
gi 1958675534 1661 DIELVMAQANVSRAKAVRALKDNHSDIVNAIMEL 1694
Cdd:TIGR00264 81 DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
709-1022 |
1.19e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.41 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 709 SPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQE 788
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAA 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 789 SPTASSVPlqssdPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPlqSSDPTSEPEPEAVLTLRSQQ-DEEIVTVPQ 867
Cdd:pfam17823 200 SSAPATLT-----PARGISTAATATGHPAAGTALAAVGNSSPAAGTVT--AAVGTVTPAALATLAAAAGTvASAAGTINM 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 868 ESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQ 947
Cdd:pfam17823 273 GDPHARRLSPAKHMPSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTK 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 948 ---ESPTASSVPL---------QSSDPTSEPEPeaVLTLRSQQDKEIVTVPQESPTASSVPLQSSDPT--SEPEPEVAAT 1013
Cdd:pfam17823 353 aqaKEPSASPVPVlhtsmipevEATSPTTQPSP--LLPTQGAAGPGILLAPEQVATEATAGTASAGPTprSSGDPKTLAM 430
|
....*....
gi 1958675534 1014 PEPQQPEEG 1022
Cdd:pfam17823 431 ASCQLSTQG 439
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NAC_NACA |
cd22054 |
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent ... |
1560-1607 |
1.60e-23 |
|
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent polypeptide-associated complex (NAC) is a complex, conserved from archaea to human, that plays an important role in co translational targeting of nascent polypeptides to the endoplasmic reticulum (ER). In eukaryotes, under physiological conditions, the complex is a stable heterodimer of the NAC alpha subunit and the NAC beta subunit, also known as basal transcription factor 3b (BTF3b). An imbalance of the relative concentrations has been observed in diseases, like Alzheimer's, AIDS, and ulcerative colitis. NAC alpha consists of a NAC domain, also present in BTF3, and a unique C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 409233 Cd Length: 48 Bit Score: 94.55 E-value: 1.60e-23
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1958675534 1560 GLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDL 1607
Cdd:cd22054 1 GLKPVPGVTRVTIKKSKNILFVINKPDVYKSPGSDTYIVFGEAKIEDL 48
|
|
| NAC |
pfam01849 |
NAC domain; |
1551-1604 |
6.14e-21 |
|
NAC domain;
Pssm-ID: 426474 Cd Length: 54 Bit Score: 87.52 E-value: 6.14e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1958675534 1551 KARKAMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKI 1604
Cdd:pfam01849 1 KLQKALKKLGLKPIPGVEEVNIFKSDGKVLVFNNPKVQKSPGSNTYVVFGEAEE 54
|
|
| UBA_NACAD |
cd14416 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha ... |
1655-1696 |
7.77e-21 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD); The subfamily includes a group of uncharacterized proteins mainly found in vertebrates. Their biological function remains unknown, but they show high sequence similarity to the nascent polypeptide-associated complex (NAC) subunit alpha (NACA) that exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. Like NACA, NACAD contains an NAC domain and a C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 270599 Cd Length: 44 Bit Score: 87.05 E-value: 7.77e-21
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1958675534 1655 AGLEPRDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELTM 1696
Cdd:cd14416 3 TGLEVRDIELVMAQANVSRAKAVRALRHNNNDIVNAIMELTM 44
|
|
| UBA_NAC_euk |
cd14358 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its ... |
1659-1695 |
4.00e-19 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes; The subfamily contains nascent polypeptide-associated complex subunit alpha (NACA), putative NACA-like protein (NACP1), nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD), and similar proteins. NACA, also called NAC-alpha or Alpha-NAC, together with BTF3, also called Beta-NAC, form the nascent polypeptide-associated complex (NAC) which is a cytosolic protein chaperone that contacts the nascent polypeptide chains as they emerge from the ribosome. Besides, NACA has a high affinity for nucleic acids and exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. It is a cytokine-modulated specific transcript in the human TF-1 erythroleukemic cell line. It also acts as a transcriptional co-activator in osteoblasts by binding to phosphorylated c-Jun, a member of the activator-protein-1 (AP-1) family. Moreover, NACA binds to and regulates the adaptor protein Fas-associated death domain (FADD). In addition, NACA functions as a novel factor participating in the positive regulation of human erythroid-cell differentiation. The biological function of NACP1 (also called Alpha-NAC pseudogene 1 or NAC-alpha pseudogene 1) and NACAD remain unclear. All family members contain an NAC domain and a C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 270541 [Multi-domain] Cd Length: 37 Bit Score: 81.90 E-value: 4.00e-19
10 20 30
....*....|....*....|....*....|....*..
gi 1958675534 1659 PRDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:cd14358 1 PKDIELVMQQANVSRAKAVKALKENDNDIVNAIMELT 37
|
|
| UBA_NACA_NACP1 |
cd14415 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and ... |
1655-1695 |
1.50e-18 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and putative NACA-like protein (NACP1); NACA, also called NAC-alpha or alpha-NAC, together with BTF3, also called Beta-NAC, form the nascent polypeptide-associated complex (NAC) which is a cytosolic protein chaperone that contacts the nascent polypeptide chains as they emerge from the ribosome. Besides, NACA has a high affinity for nucleic acids and exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. It is a cytokine-modulated specific transcript in the human TF-1 erythroleukemic cell line. It also acts as a transcriptional co-activator in osteoblasts by binding to phosphorylated c-Jun, a member of the activator-protein-1 (AP-1) family. Moreover, NACA binds to and regulates the adaptor protein Fas-associated death domain (FADD). In addition, NACA functions as a novel factor participating in the positive regulation of human erythroid-cell differentiation. Both NACA and BTF3 harbor an NAC domain that mediates the dimerization of the two subunits. By contrast, NACA has an extra ubiquitin-associated (UBA) domain in the C-terminus. In addition to NACA, the family includes NACP1, also called Alpha-NAC pseudogene 1 or NAC-alpha pseudogene 1. The biological function of NACP1 remains unclear.
Pssm-ID: 270598 Cd Length: 46 Bit Score: 80.38 E-value: 1.50e-18
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1958675534 1655 AGLEPRDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:cd14415 6 TGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 46
|
|
| UBA_NAC_like |
cd14278 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and ... |
1659-1695 |
1.62e-13 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and similar proteins; The family contains nascent polypeptide-associated complex subunit alpha (NACA), putative NACA-like protein (NACP1), nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD), and similar proteins found in archaea and bacteria. NACA, also called NAC-alpha or Alpha-NAC, together with BTF3, also called Beta-NAC, form the nascent polypeptide-associated complex (NAC) which is a cytosolic protein chaperone that contacts the nascent polypeptide chains as they emerge from the ribosome. Besides, NACA has a high affinity for nucleic acids and exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. It is a cytokine-modulated specific transcript in the human TF-1 erythroleukemic cell line. It also acts as a transcriptional co-activator in osteoblasts by binding to phosphorylated c-Jun, a member of the activator-protein-1 (AP-1) family. Moreover, NACA binds to and regulates the adaptor protein Fas-associated death domain (FADD). In addition, NACA functions as a novel factor participating in the positive regulation of human erythroid-cell differentiation. The biological function of NACP1 (also called Alpha-NAC pseudogene 1 or NAC-alpha pseudogene 1) and NACAD remain unclear. The family also includes huntingtin-interacting protein K (HYPK), also called Huntingtin yeast partner K or Huntingtin yeast two-hybrid protein K. It is an intrinsically unstructured Huntingtin (HTT)-interacting protein with chaperone-like activity. It may be involved in regulating cell growth, cell cycle, unfolded protein response and cell death. All members in this family contain an ubiquitin-associated (UBA) domain.
Pssm-ID: 270464 [Multi-domain] Cd Length: 37 Bit Score: 65.97 E-value: 1.62e-13
10 20 30
....*....|....*....|....*....|....*..
gi 1958675534 1659 PRDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:cd14278 1 EEDIELVMSQTGVSREEAIKALRENKGDVVDAILELT 37
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
688-1044 |
1.01e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 67.06 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 688 PEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLtlrSQQDEEIVTVPQESPTASSVPLQSSDPTSEPE 767
Cdd:PRK14949 377 PEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQV---QAANAEAVAEADASAEPADTVEQALDDESELL 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 768 P-----EAVLTLRSQ-----QDEEIVTVPQESPTASSVPLQSSDP----TSEPEPEAVLTLRSQQDEEIVTVPQESPTAS 833
Cdd:PRK14949 454 AalnaeQAVILSQAQsqgfeASSSLDADNSAVPEQIDSTAEQSVVnpsvTDTQVDDTSASNNSAADNTVDDNYSAEDTLE 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 834 SVPLQSSDPTSEPEP--------------EAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPE---------- 889
Cdd:PRK14949 534 SNGLDEGDYAQDSAPldayqddyvafsseSYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAasladddild 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 890 AVLTLR----------SQQDE----EIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASSV 955
Cdd:PRK14949 614 AVLAARdsllsdldalSPKEGdgkkSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALA 693
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 956 PLQSSDPTSEPE----------PEAVLTLRSQQDKEIVTVPQESPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGVTI 1025
Cdd:PRK14949 694 SGSAPAPPPVPDpydrppweeaPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQ 773
|
410
....*....|....*....
gi 1958675534 1026 PQVAPVALPSPLQGLDSTS 1044
Cdd:PRK14949 774 TSSEVQDTELNLVLLSSGS 792
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
636-1178 |
2.24e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.12 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 636 SPQSTDPTPGPEAGAmatfefqqakEGVPELQDTPVASSPALQASDPTSEPEPEAVLTL-----RSQQDEEIVTVPQESP 710
Cdd:PHA03247 2488 FPFAAGAAPDPGGGG----------PPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWirgleELASDDAGDPPPPLPP 2557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 711 TASSVPLQSSDPTSEPEP---EAVLTLRSQQDEeivtVPQEsPTASSVPLQSSDPTSEPEPEAVLTlrsqqdeeivtvPQ 787
Cdd:PHA03247 2558 AAPPAAPDRSVPPPRPAPrpsEPAVTSRARRPD----APPQ-SARPRAPVDDRGDPRGPAPPSPLP------------PD 2620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 788 ESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESP----TASSVPLQSSDPTSEPEPEAVLtlrsqqdeeiv 863
Cdd:PHA03247 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRprraRRLGRAAQASSPPQRPRRRAAR----------- 2689
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 864 tvPQESPTASSVPLQSSDPTSEPEPEAVLTlrsqqdeEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQdeeiv 943
Cdd:PHA03247 2690 --PTVGSLTSLADPPPPPPTPEPAPHALVS-------ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA----- 2755
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 944 tvPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQqdkeiVTVPQESPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGV 1023
Cdd:PHA03247 2756 --RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA-----VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1024 TIP-QVAPVALPSPLQGLDSTSDLESVVAGTMESWQDegiATATQDMPVVAPPPLGGIESTSDPELSAQDTPQALQREAG 1102
Cdd:PHA03247 2829 PPPtSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRR---PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQP 2905
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958675534 1103 YTPGTKPSVSEAHQELGVALGPRPVPKEQDAKPPHSEL-PASDQAQQNGSEPVVKNDNLGVPGEGSGPTLSTKTSEP 1178
Cdd:PHA03247 2906 ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLaPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982
|
|
| EGD2 |
COG1308 |
Transcription factor homologous to NACalpha-BTF3 [Transcription]; |
1550-1695 |
1.32e-09 |
|
Transcription factor homologous to NACalpha-BTF3 [Transcription];
Pssm-ID: 440919 [Multi-domain] Cd Length: 116 Bit Score: 57.55 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1550 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKIEDLsqqvhKAAAEKFKVPSEs 1625
Cdd:COG1308 8 RKMKQMMKQMGIKVEEiDAEEVIIRtKDKEI--VFENPQVtvMKAQGQETYQIVGEPEEVEK-----GAEEAEVEIPEE- 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1626 salvpelapgprvrpeceeqeeeeeeveeagleprDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:COG1308 80 -----------------------------------DVELVAEQTGVSEEEAREALEEANGDLAEAILKLE 114
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
594-1031 |
2.23e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.03 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 594 PPLLQNTDPTSGPESVAVVMLEPQQDEGCVTVLQDVPvvSLPSPQSTDPTPGPEAGAMAtfefQQAKEGVPELQDTPVAS 673
Cdd:PHA03247 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRP--DAPPQSARPRAPVDDRGDPR----GPAPPSPLPPDTHAPDP 2626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 674 SPALQASDPTSEPEPEAVLTLRSQQDEEIVTVPQESP----TASSVPLQSSDPTSEPEPEAVL-TLRSQQDEEIVTVPQE 748
Cdd:PHA03247 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRprraRRLGRAAQASSPPQRPRRRAARpTVGSLTSLADPPPPPP 2706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 749 SPTASSVPLQSSDPTSepePEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDP-----TSEPEPEAVLTLRSQQDEEIV 823
Cdd:PHA03247 2707 TPEPAPHALVSATPLP---PGPAAARQASPALPAAPAPPAVPAGPATPGGPARParpptTAGPPAPAPPAAPAAGPPRRL 2783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 824 TVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPeavltlrsqqdeeiv 903
Cdd:PHA03247 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP--------------- 2848
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 904 TVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEeiVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDKEIV 983
Cdd:PHA03247 2849 SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR--LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1958675534 984 TVPQESPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGVTIPQVAPV 1031
Cdd:PHA03247 2927 PQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974
|
|
| NAC |
cd21114 |
NAC domain; This family contains the NAC domain, named after the nascent ... |
1564-1606 |
4.93e-09 |
|
NAC domain; This family contains the NAC domain, named after the nascent polypeptide-associated complex (NAC) whose subunits contain NAC domains. In eukaryotes, the NAC complex, which plays an important role in co-translational targeting of nascent polypeptides to endoplasmic reticulum (ER), consists of 2 subunits: NAC alpha and a shortened splice variant of the basal transcription factor 3 (BTF3; also called BTF3b or NAC beta). The full length BTF3a protein excites transcription.
Pssm-ID: 409232 Cd Length: 43 Bit Score: 53.46 E-value: 4.93e-09
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1958675534 1564 IQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIED 1606
Cdd:cd21114 1 IPGIEEVTMVMEDGSVIVFTMPKVQASLASNVFVVTGEATREQ 43
|
|
| nac |
PRK06369 |
nascent polypeptide-associated complex protein; Reviewed |
1550-1695 |
9.28e-09 |
|
nascent polypeptide-associated complex protein; Reviewed
Pssm-ID: 235786 [Multi-domain] Cd Length: 115 Bit Score: 54.87 E-value: 9.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1550 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKiedlsqQVHKAAAEKFKVPSEs 1625
Cdd:PRK06369 8 RKMKQMMKQMGIDVEElDVEEVIIRlKDKEI--VFENPQVtvMDAQGQKTYQIVGEPE------EVEKEAEKEVEIPEE- 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1626 salvpelapgprvrpeceeqeeeeeeveeagleprDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:PRK06369 79 -----------------------------------DIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113
|
|
| UBA_AeNAC |
cd14359 |
UBA-like domain found in archaeal nascent polypeptide-associated complex homolog from ... |
1661-1695 |
3.52e-08 |
|
UBA-like domain found in archaeal nascent polypeptide-associated complex homolog from Methanothermobacter marburgensis (AeNAC) and similar proteins; AeNAC is a functional archaeal homolog of eukaryotic nascent polypeptide-associated complex (NAC). Both AeNAC and eukaryotic NAC function as the cytosolic chaperone that can bind to ribosomal RNA, interact with the nascent polypeptide chains as they emerge from the ribosome, and assist in post-translational processes. They all contain a NAC domain and an ubiquitin-associated (UBA) domain in the C-terminus. However, unlike eukaryotic NAC, AeNAC forms a ribosome associated homodimer, but not heterodimer. The NAC domain of AeNAC is responsible for the homodimer formation.
Pssm-ID: 270542 [Multi-domain] Cd Length: 40 Bit Score: 50.68 E-value: 3.52e-08
10 20 30
....*....|....*....|....*....|....*
gi 1958675534 1661 DIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:cd14359 6 DIELVMEQTGVSREEARKALEESGGDLAEAILKLT 40
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
658-1029 |
8.70e-08 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 57.36 E-value: 8.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 658 QAKEGVPELQDTPVASSPALQASDPTSEPEPEAVLTLRSQqdEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQ 737
Cdd:PRK10811 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRN--DEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQ 722
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 738 -QDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTAssvplQSSDPTSEPEPEAVLTLRS 816
Cdd:PRK10811 723 rQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPE-----QDEENNAENRDNNGMPRRS 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 817 QQDEEIVTVP---------QESPTASSVPLQSSdpTSEPE----------PEAVLTLRSQQDEEIVTVPQESPTASSVPL 877
Cdd:PRK10811 798 RRSPRHLRVSgqrrrryrdERYPTQSPMPLTVA--CASPEmasgkvwiryPVVRPQDVQVEEQREAEEVQVQPVVAEVPV 875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 878 QSSDPTSEPEPEAvltlrsqqdEEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEeiVTVPQESPTASSVPl 957
Cdd:PRK10811 876 AAAVEPVVSAPVV---------EAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQ--VITESDVAVAQEVA- 943
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958675534 958 QSSDPTSEPEPEAVLTLRSQQDKEIVTVPQESPTASSVPLQSSdptsEPEPEVAATPEPQQPEEGVTIPQVA 1029
Cdd:PRK10811 944 EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAE----VAAEVETVTAVEPEVAPAQVPEATV 1011
|
|
| HYPK_UBA |
pfam19026 |
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK ... |
1656-1695 |
9.27e-08 |
|
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK protein and its homologs. This domain in HYPK mediates a protein interaction with the Naa15 C-terminus.
Pssm-ID: 436907 Cd Length: 41 Bit Score: 49.86 E-value: 9.27e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1958675534 1656 GLEPRDIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:pfam19026 2 KVKKEDVELIMTELEVSKAKAERALREHGGDVVAALRALL 41
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
695-1032 |
2.52e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 52.73 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 695 RSQQDEEIVTVpQESPTASSVPLQSSDPTSEPEPEAVLTLRSQqdEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTL 774
Cdd:PRK10811 643 RRQAQQQTAET-RESQQAEVTEKARTQDEQQQAPRRERQRRRN--DEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPR 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 775 RSQ-QDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTAssvplQSSDPTSEPEPEAVLT 853
Cdd:PRK10811 720 RKQrQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPE-----QDEENNAENRDNNGMP 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 854 LRSQQDEEIVTVP---------QESPTASSVPLQS--------------SDPTSEPEPEAVLTLRSQQDEEIVTVPQESP 910
Cdd:PRK10811 795 RRSRRSPRHLRVSgqrrrryrdERYPTQSPMPLTVacaspemasgkvwiRYPVVRPQDVQVEEQREAEEVQVQPVVAEVP 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 911 TVSSVPLQSSDPTSEPEPEVA---ATLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDKEIVTVPQ 987
Cdd:PRK10811 875 VAAAVEPVVSAPVVEAVAEVVeepVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQD 954
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1958675534 988 ESPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGVTI-PQVAPVA 1032
Cdd:PRK10811 955 ETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVEtVTAVEPE 1000
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
646-1108 |
1.10e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 50.42 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 646 PEAGAMATFEFQQAKEgVPELQDTPVASSPALQASDPTSEPEPEAVLT-----LRS--QQDEEIVTVPQESPTASSVPLQ 718
Cdd:PRK10811 524 PEQPALATFAMPDVPP-APTPAEPAAPVVAAAPKAAAATPPAQPGLLSrffgaLKAlfSGGEETKPQEQPAPKAEAKPER 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 719 SSD--------------PTSEPEPEAVLTLRSQQDE---------EIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLR 775
Cdd:PRK10811 603 QQDrrkprqnnrrdrneRRDTRDNRTRREGRENREEnrrnrrqaqQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRR 682
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 776 SQqdEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQ-QDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTL 854
Cdd:PRK10811 683 RN--DEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQrQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAP 760
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 855 RSQQDEEIVTVPQESPTAssvplQSSDPTSEPEPEAVLTLRSQQDEEIVTVP---------QESPTVSSVPLQSSDPTSE 925
Cdd:PRK10811 761 RTELVKVPLPVVAQTAPE-----QDEENNAENRDNNGMPRRSRRSPRHLRVSgqrrrryrdERYPTQSPMPLTVACASPE 835
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 926 ------------PEPEVAATLRSQQDEEIVTVPQ--ESPTASSVPLQSSDPTSEPEPEAVltlrsqqdkeIVTVPQESPT 991
Cdd:PRK10811 836 masgkvwirypvVRPQDVQVEEQREAEEVQVQPVvaEVPVAAAVEPVVSAPVVEAVAEVV----------EEPVVVAEPQ 905
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 992 ASSVplqssDPTSEPEPEVAATPEPQQPEegVTIPQVAPVALPS-----PLQGLDSTSDLESVVAGTMESWQDEGIATAT 1066
Cdd:PRK10811 906 PEEV-----VVVETTHPEVIAAPVTEQPQ--VITESDVAVAQEVaehaePVVEPQDETADIEEAAETAEVVVAEPEVVAQ 978
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1958675534 1067 QDMPVVAPPPLGGIESTSDPELSAQDTPQALQREAGY--TPGTK 1108
Cdd:PRK10811 979 PAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHatAPMTR 1022
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
564-1144 |
4.23e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 48.54 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 564 STMEYVAVASVGPWKAEGGVAiPQDPFMTLPPLLQNTDPTSGPESVAVVMLEPQQDEgcvtvlqdvPVVSlPSPQSTDPT 643
Cdd:PRK10263 315 PITEPVAVAAAATTATQSWAA-PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGE---------PVIA-PAPEGYPQQ 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 644 PgpeagamatfEFQQAKEGVPELQDTPVASSPALQASDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPT 723
Cdd:PRK10263 384 S----------QYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQ 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 724 SEPEPEAVLTLRSQQDEEIVTVPQESPTassvPLQSSDPTSEPEPEAVLTLRS-------QQDEEIVTVPQESPTASSVP 796
Cdd:PRK10263 454 STFAPQSTYQTEQTYQQPAAQEPLYQQP----QPVEQQPVVEPEPVVEETKPArpplyyfEEVEEKRAREREQLAAWYQP 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 797 LqsSDPTSEPEP--EAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEA-VLTL------RSQQDEEI----- 862
Cdd:PRK10263 530 I--PEPVKEPEPikSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAApVFSLansggpRPQVKEGIgpqlp 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 863 ----VTVPQESPTAS---SVPLQ--SSDPTSEPEPEAVLTLRSQQDEEIVTVPQE---------------SPTVSSVPLQ 918
Cdd:PRK10263 608 rpkrIRVPTRRELASygiKLPSQraAEEKAREAQRNQYDSGDQYNDDEIDAMQQDelarqfaqtqqqrygEQYQHDVPVN 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 919 SSDPTSEPEPEVAATLRSQQDEEivtVPQESPtASSVPLQSSDPTSEPEPEAVLTLRSQQDKEIVTVPQESPTASSVPLQ 998
Cdd:PRK10263 688 AEDADAAAEAELARQFAQTQQQR---YSGEQP-AGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQ 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 999 SSDPTSEPEPEVAATPEPQQPeegvTIPQVAPVALPSPLQGLDSTSDLESVVAGTMESWQDEgiatatqdMPVVAPPPLG 1078
Cdd:PRK10263 764 QYQQPQQPVAPQPQYQQPQQP----VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ--------QPVAPQPQYQ 831
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958675534 1079 GIESTSDPELSAQDTPQALQREAGYTPGTKPSVseahqelgvalgprPVPKEQDAKPPHSELPASD 1144
Cdd:PRK10263 832 QPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTT--------------PLPSLDLLTPPPSEVEPVD 883
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
839-1385 |
4.59e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.78 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 839 SSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSD--PTSEPEPEAVLTLRSQQDEEIVTVPQESPTVSSVP 916
Cdd:PHA03247 2544 ASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRArrPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 917 LQ------SSDPTSEPEPEVAATLRSQQDEEIVTVPQESP----TASSVPLQSSDPTSEPEPEAVLtlrsqqdkeivtvP 986
Cdd:PHA03247 2624 PDppppspSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRprraRRLGRAAQASSPPQRPRRRAAR-------------P 2690
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 987 QESPTASSV--PLQSSDPTSEPEPEVAATPEPQQPEEGVTIPQVAPVALPSPLQGLDSTSDLESVVAGTMESWQDEGIAT 1064
Cdd:PHA03247 2691 TVGSLTSLAdpPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1065 ATQDmPVVAPPPLGGIESTSDPELSAQDTPQALQREAGYTPGTKPSVSEAHQELGVALGPRPVPKEQDAKPPHSELPASD 1144
Cdd:PHA03247 2771 PPAA-PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1145 QAQQNGSEPVVKNDNLGvPGEGSGPTLSTKTSEPLSCMGEKVTENLAAPKPGACLEAHDGAKTHSPQRQASRAKNKCGRG 1224
Cdd:PHA03247 2850 LPLGGSVAPGGDVRRRP-PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1225 PKPPGQGKGSKSTASQGTTETFKAhsaarsetSQPQLMNSAGEGTSLSVKDSSGPRLPVAVSVQSKLGSCPGSPARATCT 1304
Cdd:PHA03247 2929 PQPPPPPPPRPQPPLAPTTDPAGA--------GEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHS 3000
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1305 LSRVYSEETARCAPPFQHPEPVLGLGSGEQPKVTLGTLNLSS--------ENSAGDLLTTPQNRLLDPDPDPSAPSALNR 1376
Cdd:PHA03247 3001 LSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLfdsdsersDLEALDPLPPEPHDPFAHEPDPATPEAGAR 3080
|
570
....*....|
gi 1958675534 1377 AFQSSP-GPP 1385
Cdd:PHA03247 3081 ESPSSQfGPP 3090
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
667-1038 |
4.65e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.52 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 667 QDTPVASSPALQASDPTSEPEPEAVLTLRSQQDEEIVTvPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEE----- 741
Cdd:PHA03378 442 RATPHSQAPTVVLHRPPTQPLEGPTGPLSVQAPLEPWQ-PLPHPQVTPVILHQPPAQGVQAHGSMLDLLEKDDEDmeqrv 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 742 ----IVTVPQESPTASSVP--------LQSSDP-TSEPEPEAVLTLRSQQDEEI--VTVPQESPTASSVPLQSSDPTSEP 806
Cdd:PHA03378 521 matlLPPSPPQPRAGRRAPcvytedldIESDEPaSTEPVHDQLLPAPGLGPLQIqpLTSPTTSQLASSAPSYAQTPWPVP 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 807 EPeavltlrsqqdeeivTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSE- 885
Cdd:PHA03378 601 HP---------------SQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPt 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 886 -PEPEAVLTLRSQQDEEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASSVPLQSSDPTS 964
Cdd:PHA03378 666 wTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRAR 745
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958675534 965 EPEPEAVLTLRSQQDKEIVTVPQESPTAssvplqssdPTSEPEPEVAatPEPQQPEEGVTIPQVAPVALPSPLQ 1038
Cdd:PHA03378 746 PPAAAPGRARPPAAAPGRARPPAAAPGA---------PTPQPPPQAP--PAPQQRPRGAPTPQPPPQAGPTSMQ 808
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
909-1038 |
4.73e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 48.32 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 909 SPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDKEIVTVPQE 988
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958675534 989 SPTAS------SVPLQSSDPTSEPEPEVAATPEPQQPEEGVTIPQVAPVALPSPLQ 1038
Cdd:PRK07994 450 RPVNSalerlaSVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALE 505
|
|
| TIGR00264 |
TIGR00264 |
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its ... |
1661-1694 |
2.07e-04 |
|
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator. [Unknown function, General]
Pssm-ID: 272988 [Multi-domain] Cd Length: 116 Bit Score: 42.63 E-value: 2.07e-04
10 20 30
....*....|....*....|....*....|....
gi 1958675534 1661 DIELVMAQANVSRAKAVRALKDNHSDIVNAIMEL 1694
Cdd:TIGR00264 81 DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
657-860 |
3.13e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 45.42 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 657 QQAKEGVP--ELQDTPVASSPALQASDPTSEPEPEavltlrsqqdeeivtvPQESPTASSVPLQSSDPTSEPEPEAVLTL 734
Cdd:PRK14960 387 QTAQEITPvsAVQPVEVISQPAMVEPEPEPEPEPE----------------PEPEPEPEPEPEPEPEPEPEPQPNQDLMV 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 735 RSQQDEEIVTVpQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTL 814
Cdd:PRK14960 451 FDPNHHELIGL-ESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEPASTAEPIGLFEASSAEFSLAQDTSAYDL 529
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958675534 815 RSQQDEEIVTVPQESPTASSVPLQSSDPTSEPE--PEAVLTLRSQQDE 860
Cdd:PRK14960 530 VSEPVIEQQSLVQAEIVETVAVVKEPNATDNSQlmPQDILKLPSQTLE 577
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
830-1019 |
7.51e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.48 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 830 PTASSVPLQSSDPTSEPEPEAVLTLRSQQdeeiVTVPQESPTASSVPLQSSDPTS-EPEPEAVLTLRSQQDEEIVTVPQE 908
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPP----AAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 909 SPTVSSVPL-QSSDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDKEIVTVPQ 987
Cdd:PRK12323 451 APAPAAAPAaAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530
|
170 180 190
....*....|....*....|....*....|..
gi 1958675534 988 ESPTASSVPLQSSDPTSEPEPEVAATPEPQQP 1019
Cdd:PRK12323 531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
709-1022 |
1.19e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.41 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 709 SPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQE 788
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAA 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 789 SPTASSVPlqssdPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPlqSSDPTSEPEPEAVLTLRSQQ-DEEIVTVPQ 867
Cdd:pfam17823 200 SSAPATLT-----PARGISTAATATGHPAAGTALAAVGNSSPAAGTVT--AAVGTVTPAALATLAAAAGTvASAAGTINM 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 868 ESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQ 947
Cdd:pfam17823 273 GDPHARRLSPAKHMPSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTK 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 948 ---ESPTASSVPL---------QSSDPTSEPEPeaVLTLRSQQDKEIVTVPQESPTASSVPLQSSDPT--SEPEPEVAAT 1013
Cdd:pfam17823 353 aqaKEPSASPVPVlhtsmipevEATSPTTQPSP--LLPTQGAAGPGILLAPEQVATEATAGTASAGPTprSSGDPKTLAM 430
|
....*....
gi 1958675534 1014 PEPQQPEEG 1022
Cdd:pfam17823 431 ASCQLSTQG 439
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
667-968 |
1.37e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.49 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 667 QDTPVASSPALQASDPTSEPEPEAVLTLRSQ-QDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTV 745
Cdd:PRK10811 692 QEAKALNVEEQSVQETEQEERVQQVQPRRKQrQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPV 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 746 PQESPTAssvplQSSDPTSEPEPEAVLTLRSQQDEEIVTVP---------QESPTASSVPLQS--------------SDP 802
Cdd:PRK10811 772 VAQTAPE-----QDEENNAENRDNNGMPRRSRRSPRHLRVSgqrrrryrdERYPTQSPMPLTVacaspemasgkvwiRYP 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 803 TSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPT--------------SEPEPEAVLTLRSQQDEEI------ 862
Cdd:PRK10811 847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVveavaevveepvvvAEPQPEEVVVVETTHPEVIaapvte 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 863 ---VTVPQESPTASSVPlQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATlrSQQD 939
Cdd:PRK10811 927 qpqVITESDVAVAQEVA-EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP--EVAP 1003
|
330 340
....*....|....*....|....*....
gi 1958675534 940 EEIVTVPQESPTASSVPLQSSDPTSEPEP 968
Cdd:PRK10811 1004 AQVPEATVEHNHATAPMTRAPAPEYVPEA 1032
|
|
| UBA_HYPK |
cd14361 |
UBA-like domain found in Huntingtin-interacting protein K (HYPK) and similar proteins; HYPK, ... |
1661-1695 |
1.52e-03 |
|
UBA-like domain found in Huntingtin-interacting protein K (HYPK) and similar proteins; HYPK, also called Huntingtin yeast partner K or Huntingtin yeast two-hybrid protein K, is an intrinsically unstructured Huntingtin (HTT)-interacting protein with chaperone-like activity. It is involved in regulating cell growth, cell cycle, unfolded protein response, and cell death. All members in this subfamily contain an N-terminal ubiquitin-associated (UBA) that shows high sequence similarity with that of eukaryotic nascent polypeptide-associated complex proteins (NAC) which is one of the cytosolic chaperones that contact the nascent polypeptide chains as they emerge from the ribosome and assist in post-translational processes.
Pssm-ID: 270544 Cd Length: 41 Bit Score: 37.87 E-value: 1.52e-03
10 20 30
....*....|....*....|....*....|....*
gi 1958675534 1661 DIELVMAQANVSRAKAVRALKDNHSDIVNAIMELT 1695
Cdd:cd14361 7 DVELIVNELEVSKAQAERALREHNGDVVKALRALI 41
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
669-1036 |
1.75e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 669 TPVASSPALQASDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAvltlrsqqdeeivTVPQE 748
Cdd:PHA03307 54 TVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPD-------------PPPPT 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 749 SPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSV-PLQSSDPTSEPePEAVLTLRSQQDEEIVTVPQ 827
Cdd:PHA03307 121 PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAsSRQAALPLSSP-EETARAPSSPPAEPPPSTPP 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 828 ESPTASSVPLQSSDPTSEPEPEAVLtLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPq 907
Cdd:PHA03307 200 AAASPRPPRRSSPISASASSPAPAP-GRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNG- 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 908 ESPTVSSVPLQSSDPTSEPEPEvaatlrsqqdeeivtvPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDkeivtVPQ 987
Cdd:PHA03307 278 PSSRPGPASSSSSPRERSPSPS----------------PSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS-----ESS 336
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1958675534 988 ESPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGVTIPQVAPVALPSP 1036
Cdd:PHA03307 337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRP 385
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
629-1033 |
2.34e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 629 VPVVSLPSPQSTDPTPGPEAGAMAtfefqqakegvPELQDTPVASSPALQASDPTSEPEPEAV---LTLRSQQDEEIVTV 705
Cdd:PRK07764 393 APAAAAPSAAAAAPAAAPAPAAAA-----------PAAAAAPAPAAAPQPAPAPAPAPAPPSPagnAPAGGAPSPPPAAA 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 706 PQESPTASSVPLQSSDPTSEPEPEAvltlrsqqdeeivtvPQESPTASSVPlqsSDPTSEPEPEAVLTLRSQQDEEIVTV 785
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPA---------------APAPAAAPAAP---AAPAAPAGADDAATLRERWPEILAAV 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 786 PQESPTASSVPLQSSDPTSEPEPEAVLT---------LRSQQDEE-IVTVPQE-------------------SPTASSVP 836
Cdd:PRK07764 524 PKRSRKTWAILLPEATVLGVRGDTLVLGfstgglarrFASPGNAEvLVTALAEelggdwqveavvgpapgaaGGEGPPAP 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 837 LQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQES-PTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTVSSV 915
Cdd:PRK07764 604 ASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPaEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 916 PLQS-------SDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDKEIVTVPQE 988
Cdd:PRK07764 684 APAPaapaapaGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA 763
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1958675534 989 SPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGVTIPQVAPVAL 1033
Cdd:PRK07764 764 PAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMEL 808
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
647-1122 |
2.66e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 647 EAGAMATFEFQQAKEGVPELQDTPVASSPALQASDPTSEPEPEAVltlrsqqdeeiVTVPQESPTASSVPLQSSDPTSEP 726
Cdd:PRK07764 371 ERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAA-----------APAAAAAPAPAAAPQPAPAPAPAP 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 727 EPEAVLTlRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVltlrsqqdeeivtvPQESPTASSVPLQSSDPTSEP 806
Cdd:PRK07764 440 APPSPAG-NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA--------------PPAAPAPAAAPAAPAAPAAPA 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 807 EPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLT---------LRSQQDEE-IVTVPQE-------- 868
Cdd:PRK07764 505 GADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGfstgglarrFASPGNAEvLVTALAEelggdwqv 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 869 -----------SPTASSVPLQSSDPTSEPEPEAVltlrsqqdeeivtvpqeSPTVSSVPLQSSDPTSEPEPEVAATLRSQ 937
Cdd:PRK07764 585 eavvgpapgaaGGEGPPAPASSGPPEEAARPAAP-----------------AAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 938 QDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAvltlrsqqdkeivtvPQESPTASSVPLQSSDPTSEPEPEVAATPEPQ 1017
Cdd:PRK07764 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA---------------PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 1018 QPEEGVTIPQVAPvalpsplQGLDSTSDLESVVAGTMESWQDEGIATATQDMPVVAPPPLGGIESTSDPELSAQDTPQAL 1097
Cdd:PRK07764 713 QADDPAAQPPQAA-------QGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785
|
490 500
....*....|....*....|....*
gi 1958675534 1098 QREAGYTPGtkPSVSEAHQELGVAL 1122
Cdd:PRK07764 786 AEDDAPSMD--DEDRRDAEEVAMEL 808
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
670-861 |
2.86e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.55 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 670 PVASSPALQASDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQdeeivtvpqes 749
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQL----------- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 750 ptassVPLQSSDPTSEPEPEAVLTLRSqqdeeivtVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQES 829
Cdd:PRK07994 430 -----QRAQGATKAKKSEPAAASRARP--------VNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT 496
|
170 180 190
....*....|....*....|....*....|..
gi 1958675534 830 PTASSVPLqssDPTSEPEPEAVLTLRSQQDEE 861
Cdd:PRK07994 497 PKALKKAL---EHEKTPELAAKLAAEAIERDP 525
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
642-815 |
4.19e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 41.95 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 642 PTPGPEAGAMATFEFQQAKEGVPELQDTPVASSPALQASDPTSEPEPEAV---LTLRSQQDEEIVTVPQESPTASSVPLQ 718
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVeepVVVAEPQPEEVVVVETTHPEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 719 SSDPTSEPEPEAVLTLRSQQDEEIVTVPQEspTASSVPLQSSDPTSEPEPEAVltlrsqqdEEIVTVPQESPTASSVPLQ 798
Cdd:PRK10811 926 EQPQVITESDVAVAQEVAEHAEPVVEPQDE--TADIEEAAETAEVVVAEPEVV--------AQPAAPVVAEVAAEVETVT 995
|
170
....*....|....*..
gi 1958675534 799 SSDPTSEPEPEAVLTLR 815
Cdd:PRK10811 996 AVEPEVAPAQVPEATVE 1012
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
884-1017 |
4.51e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 41.96 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 884 SEPEPEAVLTLRSQQDEEIVTVP----QESPTVSSVPLQSSDPTSEPEPEvaatlrsqqdeeivtvPQESPTASsvPLQS 959
Cdd:PRK14960 372 VQQNGQAEVGLNSQAQTAQEITPvsavQPVEVISQPAMVEPEPEPEPEPE----------------PEPEPEPE--PEPE 433
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958675534 960 SDPTSEPEPEA-------------VLTLRSQQDKEIVTVPQES----PTASSVPLQSSDPTSEPEPEVAATPEPQ 1017
Cdd:PRK14960 434 PEPEPEPEPQPnqdlmvfdpnhheLIGLESAVVQETVSVLEEDfipvPEQKLVQVQAETQVKQIEPEPASTAEPI 508
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
844-1027 |
5.53e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 41.57 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 844 SEPEPEAVLTLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQESPTVSSVPLQS---S 920
Cdd:PRK14960 372 VQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPNQDlmvF 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 921 DPTSEP----EPEVAATLRSQQDEEIVTVPQEsptaSSVPLQSSDPTSEPEPEAVLTLRSQQDKEIVTVPQESPTASSVP 996
Cdd:PRK14960 452 DPNHHEliglESAVVQETVSVLEEDFIPVPEQ----KLVQVQAETQVKQIEPEPASTAEPIGLFEASSAEFSLAQDTSAY 527
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958675534 997 LQSSDPTSEPEP--------EVAATPEPQQPEEGVTIPQ 1027
Cdd:PRK14960 528 DLVSEPVIEQQSlvqaeiveTVAVVKEPNATDNSQLMPQ 566
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
708-1021 |
6.12e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 41.60 E-value: 6.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 708 ESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEivtvPQESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIVTVPQ 787
Cdd:PTZ00449 592 EEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPK----RPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPF 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 788 ESPTASSVPLQSSDPTSEPEPEAVLTLRSQQDEEIV--TVPQESPTASSV-----PLQSSDPTSEPEPEAVLTLRSQQDE 860
Cdd:PTZ00449 668 DPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILkeTLPETPGTPFTTprplpPKLPRDEEFPFEPIGDPDAEQPDDI 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 861 EIVTVPQESPTassvpLQSSDPTSEPEPEAVLTLRSQQDEEIVT-VPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQD 939
Cdd:PTZ00449 748 EFFTPPEEERT-----FFHETPADTPLPDILAEEFKEEDIHAETgEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRLDG 822
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 940 EEIVTVPQESPTASsvplQSSDPTSEPepeaVLTLRSQQDKEIVTV---PQESPTASSVPLqsSDPTSEPEPEVAATPEP 1016
Cdd:PTZ00449 823 LALSTTDLESDAGR----IAKDASGKI----VKLKRSKSFDDLTTVeeaEEMGAEARKIVV--DDDGTEADDEDTHPPEE 892
|
....*
gi 1958675534 1017 QQPEE 1021
Cdd:PTZ00449 893 KHKSE 897
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
890-993 |
6.68e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 41.30 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 890 AVLTLRSQQDEEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASSVPLQSSDPTSEPEP- 968
Cdd:PRK14971 382 VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVs 461
|
90 100 110
....*....|....*....|....*....|.
gi 1958675534 969 ----EAVLTLRSQQDKE--IVTVPQESPTAS 993
Cdd:PRK14971 462 kvssLGPSTLRPIQEKAeqATGNIKEAPTGT 492
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
796-1079 |
8.51e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.22 E-value: 8.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 796 PLQSSDPTSEPEPEAVltlrsqqdeeIVTVPQESPTASSVPLQSSDPTSEPEPEAvltlrSQQDEEIVTVPQesptassv 875
Cdd:PRK10263 309 PLLNGAPITEPVAVAA----------AATTATQSWAAPVEPVTQTPPVASVDVPP-----AQPTVAWQPVPG-------- 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 876 pLQSSDPTSEPEPEAVLTL-RSQQDEEIVTVPQESPTVSSVPLQSSDPTSEPEPEVAATLRSQQDEEIVTVPQESPTASS 954
Cdd:PRK10263 366 -PQTGEPVIAPAPEGYPQQsQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAG 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 955 VPLQSSDPTSEPEPEAVLTLRSQQDKEIVTVPQESPTassvPLQSSDPTSEPEPEVAAT--------------------- 1013
Cdd:PRK10263 445 NAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP----QPVEQQPVVEPEPVVEETkparpplyyfeeveekrarer 520
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958675534 1014 --------PEPQQPEEGVTIPQVAPVALPSPLQGLDSTSDLESVVAGTMESWQDEGiATATQDMPVVAPPPLGG 1079
Cdd:PRK10263 521 eqlaawyqPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATG-AAATVAAPVFSLANSGG 593
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
964-1094 |
9.85e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 40.80 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958675534 964 SEPEPEAVLTLRSQQDKEIVTVPQESPTASSVPLQSSDPTSEPEPEVAATPEPQQPEEGVTIPQVAPVALPSPLQGL--- 1040
Cdd:PRK14960 372 VQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPNQDLmvf 451
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958675534 1041 DSTSD----LESVVAGTMESWQDEGI----------------ATATQDMPVVAPPPLGGIESTSDPELSAQDTP 1094
Cdd:PRK14960 452 DPNHHeligLESAVVQETVSVLEEDFipvpeqklvqvqaetqVKQIEPEPASTAEPIGLFEASSAEFSLAQDTS 525
|
|
| |
