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Conserved domains on  [gi|1958649709|ref|XP_038947079|]
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sperm acrosome membrane-associated protein 6 isoform X11 [Rattus norvegicus]

Protein Classification

immunoglobulin domain-containing protein( domain architecture ID 10621882)

immunoglobulin (Ig) domain-containing protein adopts a fold comprised of a sandwich of two beta sheets and may function in cell adhesion and pattern recognition

CATH:  2.60.40.10
PubMed:  10436082|9541533|7932691|8176743|23842991
SCOP:  3000071

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
 74-145 8.71e-05

Immunoglobulin domain; This family contains immunoglobulin-like domains.


:

Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 39.86  E-value: 8.71e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958649709  74 QDMLVNRGDQALFSCIVAFqlpESEVTYSWKYAGGGVRTQDVSYfRDLPGSHGYLaRIRPVQPRHSGTFSCV 145
Cdd:pfam13927   9 SSVTVREGETVTLTCEATG---SPPPTITWYKNGEPISSGSTRS-RSLSGSNSTL-TISNVTRSDAGTYTCV 75
 
Name Accession Description Interval E-value
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
 74-145 8.71e-05

Immunoglobulin domain; This family contains immunoglobulin-like domains.


Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 39.86  E-value: 8.71e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958649709  74 QDMLVNRGDQALFSCIVAFqlpESEVTYSWKYAGGGVRTQDVSYfRDLPGSHGYLaRIRPVQPRHSGTFSCV 145
Cdd:pfam13927   9 SSVTVREGETVTLTCEATG---SPPPTITWYKNGEPISSGSTRS-RSLSGSNSTL-TISNVTRSDAGTYTCV 75
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 74-145 2.67e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 38.64  E-value: 2.67e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958649709   74 QDMLVNRGDQALFSCIVAfqlPESEVTYSWKYAGGGVRTQDVSYFRDLPGSHGYLaRIRPVQPRHSGTFSCV 145
Cdd:smart00410   2 PSVTVKEGESVTLSCEAS---GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTL-TISNVTPEDSGTYTCA 69
 
Name Accession Description Interval E-value
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
 74-145 8.71e-05

Immunoglobulin domain; This family contains immunoglobulin-like domains.


Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 39.86  E-value: 8.71e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958649709  74 QDMLVNRGDQALFSCIVAFqlpESEVTYSWKYAGGGVRTQDVSYfRDLPGSHGYLaRIRPVQPRHSGTFSCV 145
Cdd:pfam13927   9 SSVTVREGETVTLTCEATG---SPPPTITWYKNGEPISSGSTRS-RSLSGSNSTL-TISNVTRSDAGTYTCV 75
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 74-145 2.67e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 38.64  E-value: 2.67e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958649709   74 QDMLVNRGDQALFSCIVAfqlPESEVTYSWKYAGGGVRTQDVSYFRDLPGSHGYLaRIRPVQPRHSGTFSCV 145
Cdd:smart00410   2 PSVTVKEGESVTLSCEAS---GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTL-TISNVTPEDSGTYTCA 69
ig pfam00047
Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of ...
 77-148 4.28e-04

Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions.


Pssm-ID: 395002  Cd Length: 86  Bit Score: 38.33  E-value: 4.28e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958649709  77 LVNRGDQALFSCIVAFQLPEseVTYSWKYAGGGVRTQDVsYFRDLPGSHGYLARIRPVQPRHSGTFSCVILH 148
Cdd:pfam00047   7 TVLEGDSATLTCSASTGSPG--PDVTWSKEGGTLIESLK-VKHDNGRTTQSSLLISNVTKEDAGTYTCVVNN 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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