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Conserved domains on  [gi|1958668666|ref|XP_038945354|]
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splicing factor, suppressor of white-apricot homolog isoform X9 [Rattus norvegicus]

Protein Classification

SWAP domain-containing protein( domain architecture ID 10652672)

SWAP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 83-136 1.05e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 71.85  E-value: 1.05e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1958668666   83 HAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKE 136
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 334-381 2.23e-13

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


:

Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 65.30  E-value: 2.23e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1958668666  334 DKLAEYVARNGLKFETSVRAK--NDQRFEFLQPWHQYNAYYEFKKQFFLQ 381
Cdd:smart00648   5 DKTAQFVARNGPEFEAKLMERerNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
 
Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 83-136 1.05e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 71.85  E-value: 1.05e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1958668666   83 HAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKE 136
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 84-128 1.37e-14

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 68.31  E-value: 1.37e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1958668666  84 AIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLR-FDHYLNPYYK 128
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFdPDDPLHAYYR 46
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 334-381 2.23e-13

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 65.30  E-value: 2.23e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1958668666  334 DKLAEYVARNGLKFETSVRAK--NDQRFEFLQPWHQYNAYYEFKKQFFLQ 381
Cdd:smart00648   5 DKTAQFVARNGPEFEAKLMERerNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 334-375 1.00e-10

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 57.53  E-value: 1.00e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1958668666 334 DKLAEYVARNGLKFETSVRAK--NDQRFEFL-QPWHQYNAYYEFK 375
Cdd:pfam01805   4 KKTAQFVARNGPEFEALLMEReeRNPQFDFLfDPDDPLHAYYRWK 48
 
Name Accession Description Interval E-value
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 83-136 1.05e-15

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 71.85  E-value: 1.05e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1958668666   83 HAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKE 136
Cdd:smart00648   1 LDIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 84-128 1.37e-14

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 68.31  E-value: 1.37e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1958668666  84 AIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLR-FDHYLNPYYK 128
Cdd:pfam01805   1 DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFdPDDPLHAYYR 46
SWAP smart00648
Suppressor-of-White-APricot splicing regulator; domain present in regulators which are ...
 334-381 2.23e-13

Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible for pre-mRNA splicing processes


Pssm-ID: 197818 [Multi-domain]  Cd Length: 54  Bit Score: 65.30  E-value: 2.23e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1958668666  334 DKLAEYVARNGLKFETSVRAK--NDQRFEFLQPWHQYNAYYEFKKQFFLQ 381
Cdd:smart00648   5 DKTAQFVARNGPEFEAKLMERerNNPQFDFLKPNDPYHAYYRKKLAEYRQ 54
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 334-375 1.00e-10

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 57.53  E-value: 1.00e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1958668666 334 DKLAEYVARNGLKFETSVRAK--NDQRFEFL-QPWHQYNAYYEFK 375
Cdd:pfam01805   4 KKTAQFVARNGPEFEALLMEReeRNPQFDFLfDPDDPLHAYYRWK 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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