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Conserved domains on  [gi|1958668038|ref|XP_038945076|]
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replication factor C subunit 3 isoform X1 [Rattus norvegicus]

Protein Classification

replication factor C small subunit( domain architecture ID 1005402)

replication factor C small subunit is an AAA family ATPase containing an AAA (ATPases Associated with various cellular Activities) domain, similar to replication factor C subunit 3 (RFC3), which forms a heterotetramer with subunits RFC2, RFC4 and RFC5 and is involved in the elongation of primed DNA templates by DNA polymerases delta and epsilon

CATH:  3.40.50.300|1.10.8.60|1.20.272.10
Gene Ontology:  GO:0016887|GO:0003677|GO:0003689|GO:0006281|GO:0006260|GO:0005663
SCOP:  4000283|4001080

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12402 super family cl36124
replication factor C small subunit 2; Reviewed
 82-293 1.58e-31

replication factor C small subunit 2; Reviewed


The actual alignment was detected with superfamily member PRK12402:

Pssm-ID: 237090 [Multi-domain]  Cd Length: 337  Bit Score: 120.09  E-value: 1.58e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  82 DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLAL 161
Cdd:PRK12402  125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 162 PSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTEdQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLthcip 241
Cdd:PRK12402  205 DDDGLELIAYYAGGDLRKAILTLQTAALAAGEITM-EAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLL----- 278

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958668038 242 pevIMKGL-----LSELLHNCDGQLKG----EVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 293
Cdd:PRK12402  279 ---IDEGLsggevLEELLRVARSRYRGdnlaRLHRLAADADARLTDGANDRIQLEALLAEL 336
 
Name Accession Description Interval E-value
PRK12402 PRK12402
replication factor C small subunit 2; Reviewed
 82-293 1.58e-31

replication factor C small subunit 2; Reviewed


Pssm-ID: 237090 [Multi-domain]  Cd Length: 337  Bit Score: 120.09  E-value: 1.58e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  82 DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLAL 161
Cdd:PRK12402  125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 162 PSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTEdQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLthcip 241
Cdd:PRK12402  205 DDDGLELIAYYAGGDLRKAILTLQTAALAAGEITM-EAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLL----- 278

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958668038 242 pevIMKGL-----LSELLHNCDGQLKG----EVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 293
Cdd:PRK12402  279 ---IDEGLsggevLEELLRVARSRYRGdnlaRLHRLAADADARLTDGANDRIQLEALLAEL 336
HolB COG0470
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
41-296 1.24e-25

DNA polymerase III, delta prime subunit [Replication, recombination and repair];


Pssm-ID: 440238 [Multi-domain]  Cd Length: 289  Bit Score: 103.13  E-value: 1.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  41 IASNYH---LEVNPSDAGNSDRV-VIQEMLKTVAQsqqleTSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLI 116
Cdd:COG0470    61 MAAGNHpdlLELNPEEKSDQIGIdQIRELGEFLSL-----TPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFI 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 117 LCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLstvcKKEGLALPskLARRLAEKSCRNLRKALLMCEAcrvqqypfte 196
Cdd:COG0470   136 LIANDPSRLLPTIRSRCQVIRFRPPSEEEALAWL----REEGVDED--ALEAILRLAGGDPRAAINLLQA---------- 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 197 dqeipetdWEVY--LRETANAIVSQQTPQRLLEV--RGRLYELLthcippEVIMKGLLSELLHNCDGQLKGEVAQMAAYY 272
Cdd:COG0470   200 --------LAGRkeLLEDLAALLSRDRALELLDAllKAEALELL------DWLLKWLLDNLPLEYAGEDLARAYEALSEA 265

                         250       260
                  ....*....|....*....|....
gi 1958668038 273 EHRLQLGSKAIYHLEAFVAKFMAL 296
Cdd:COG0470   266 DRRLGRYANDRLLLEALLAKLGRL 289
DNA_pol3_delta2 pfam13177
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ...
 62-142 1.03e-05

DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.


Pssm-ID: 433013 [Multi-domain]  Cd Length: 161  Bit Score: 44.89  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  62 IQEMLKTVAQSqqletSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAP 141
Cdd:pfam13177  86 IRELQKEFSKS-----PYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160


                  .
gi 1958668038 142 S 142
Cdd:pfam13177 161 S 161
HLD_clamp_RFC cd18140
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ...
 141-206 1.85e-04

helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.


Pssm-ID: 350842 [Multi-domain]  Cd Length: 63  Bit Score: 39.05  E-value: 1.85e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958668038 141 PSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQqypfteDQEIPETDWE 206
Cdd:cd18140     1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAG------GGVITEEDVY 60
 
Name Accession Description Interval E-value
PRK12402 PRK12402
replication factor C small subunit 2; Reviewed
 82-293 1.58e-31

replication factor C small subunit 2; Reviewed


Pssm-ID: 237090 [Multi-domain]  Cd Length: 337  Bit Score: 120.09  E-value: 1.58e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  82 DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLAL 161
Cdd:PRK12402  125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 162 PSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTEdQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLthcip 241
Cdd:PRK12402  205 DDDGLELIAYYAGGDLRKAILTLQTAALAAGEITM-EAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLL----- 278

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958668038 242 pevIMKGL-----LSELLHNCDGQLKG----EVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 293
Cdd:PRK12402  279 ---IDEGLsggevLEELLRVARSRYRGdnlaRLHRLAADADARLTDGANDRIQLEALLAEL 336
rfc PRK00440
replication factor C small subunit; Reviewed
 3-299 7.46e-31

replication factor C small subunit; Reviewed


Pssm-ID: 234763 [Multi-domain]  Cd Length: 319  Bit Score: 118.05  E-value: 7.46e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038   3 LWVDKYRPSSLARLDYHKEQAAQLRNLTPSK--------------KKIEISTIA--------SNYHLEVNPSDAGNSDrv 60
Cdd:PRK00440    6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKnmphllfagppgtgKTTAALALArelygedwRENFLELNASDERGID-- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  61 VIQEMLKTVAQSQQLETSsqrDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPA 140
Cdd:PRK00440   84 VIRNKIKEFARTAPVGGA---PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 141 PSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALlmceacRVQQYPFTEDQEIPEtdwevylrETANAIVSQQ 220
Cdd:PRK00440  161 LKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAI------NALQAAAATGKEVTE--------EAVYKITGTA 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 221 TPQ------------RLLEVRGRLYELLT-HCIPPEVIMKGLLSELLH-NCDGQLKGEVAQMAAYYEHRLQLGSKAIYHL 286
Cdd:PRK00440  227 RPEeiremielalngDFTEAREKLRDLMIdYGLSGEDIIKQIHREVWSlDIPEELKVELIDAIGEADFRITEGANERIQL 306

                         330
                  ....*....|...
gi 1958668038 287 EAFVAKFMALYKK 299
Cdd:PRK00440  307 EALLAKLALLGKK 319
PRK04132 PRK04132
replication factor C small subunit; Provisional
 47-293 4.10e-27

replication factor C small subunit; Provisional


Pssm-ID: 235223 [Multi-domain]  Cd Length: 846  Bit Score: 111.47  E-value: 4.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  47 LEVNPSDAGNSDrvVIQEMLKTVAQSQQLETSSqrdFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVI 126
Cdd:PRK04132  600 LELNASDERGIN--VIREKVKEFARTKPIGGAS---FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 674

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 127 PPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALlmceacRVQQYPFTEDQEIpeTDWE 206
Cdd:PRK04132  675 EPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI------NILQAAAALDDKI--TDEN 746

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 207 VYLretanaIVSQQTPQ------------RLLEVRGRLYE-LLTHCIPPEVIMKGLLSELLH-NCDGQLKGEVAQMAAYY 272
Cdd:PRK04132  747 VFL------VASRARPEdiremmllalkgNFLKAREKLREiLLKQGLSGEDVLVQMHREVFNlPIDEPKKVELADKIGEY 820

                         250       260
                  ....*....|....*....|.
gi 1958668038 273 EHRLQLGSKAIYHLEAFVAKF 293
Cdd:PRK04132  821 NFRLVEGANEMIQLEALLAQF 841
HolB COG0470
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
41-296 1.24e-25

DNA polymerase III, delta prime subunit [Replication, recombination and repair];


Pssm-ID: 440238 [Multi-domain]  Cd Length: 289  Bit Score: 103.13  E-value: 1.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  41 IASNYH---LEVNPSDAGNSDRV-VIQEMLKTVAQsqqleTSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLI 116
Cdd:COG0470    61 MAAGNHpdlLELNPEEKSDQIGIdQIRELGEFLSL-----TPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFI 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 117 LCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLstvcKKEGLALPskLARRLAEKSCRNLRKALLMCEAcrvqqypfte 196
Cdd:COG0470   136 LIANDPSRLLPTIRSRCQVIRFRPPSEEEALAWL----REEGVDED--ALEAILRLAGGDPRAAINLLQA---------- 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 197 dqeipetdWEVY--LRETANAIVSQQTPQRLLEV--RGRLYELLthcippEVIMKGLLSELLHNCDGQLKGEVAQMAAYY 272
Cdd:COG0470   200 --------LAGRkeLLEDLAALLSRDRALELLDAllKAEALELL------DWLLKWLLDNLPLEYAGEDLARAYEALSEA 265

                         250       260
                  ....*....|....*....|....
gi 1958668038 273 EHRLQLGSKAIYHLEAFVAKFMAL 296
Cdd:COG0470   266 DRRLGRYANDRLLLEALLAKLGRL 289
PLN03025 PLN03025
replication factor C subunit; Provisional
 4-159 3.31e-23

replication factor C subunit; Provisional


Pssm-ID: 178596 [Multi-domain]  Cd Length: 319  Bit Score: 97.11  E-value: 3.31e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038   4 WVDKYRPSSLARLDYHKEQAAQLR---------NLTPSK-----KKIEISTIA-----SNYH---LEVNPSDAGNSDrvV 61
Cdd:PLN03025    3 WVEKYRPTKLDDIVGNEDAVSRLQviardgnmpNLILSGppgtgKTTSILALAhellgPNYKeavLELNASDDRGID--V 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  62 IQEMLKTVAQSQQleTSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAP 141
Cdd:PLN03025   81 VRNKIKMFAQKKV--TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158

                         170
                  ....*....|....*...
gi 1958668038 142 SIEDICSVLSTVCKKEGL 159
Cdd:PLN03025  159 SDQEILGRLMKVVEAEKV 176
DnaX COG2812
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
40-296 3.01e-14

DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];


Pssm-ID: 442061 [Multi-domain]  Cd Length: 340  Bit Score: 72.15  E-value: 3.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  40 TIASNYHLEVNPSDAGNSDRVV--IQEMLKTVAQSqqletSSQRDFKVVLLTEVDKLTKDAQHALRRTME------Kyms 111
Cdd:COG2812    75 AIAAGSHPDVIEIDAEASNIGVddIRELIEKVSYA-----PVEGRYKVYIIDEAHMLTTEAFNALLKTLEeppphvV--- 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 112 tcrLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCeacrvqq 191
Cdd:COG2812   147 ---FILATTEPQKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLL------- 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 192 ypfteDQEIP--ETDWEVYLRETANAIVSQQTPQRLLEV-----RGR-----LYELLTHCIppEVIMKGLLSELLHNCDG 259
Cdd:COG2812   217 -----DQAIAfgLLDRRELLLDLLEALLAGDVAALLALAeelakRGRdlkrfLDDLLSLLR--DLLLLKLGPDAELLVNE 289

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1958668038 260 QLKGEVAQMAAYY-----EHRLQLGSKAIYHLEAFVAKFMAL 296
Cdd:COG2812   290 DERERLQELARRLsperlLRAIQILLEARRELERNVNPRLAL 331
44 PHA02544
clamp loader, small subunit; Provisional
 3-184 1.24e-13

clamp loader, small subunit; Provisional


Pssm-ID: 222866 [Multi-domain]  Cd Length: 316  Bit Score: 70.02  E-value: 1.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038   3 LWVDKYRPSSLARL---DYHKE------QAAQLRNL-----TPSKKKIEISTIASNY----HLEVNPSDaGNSDrvVIQE 64
Cdd:PHA02544   10 MWEQKYRPSTIDECilpAADKEtfksivKKGRIPNMllhspSPGTGKTTVAKALCNEvgaeVLFVNGSD-CRID--FVRN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  65 MLKTVAQSQQLETSsqrdFKVVLLTEVDKL-TKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSI 143
Cdd:PHA02544   87 RLTRFASTVSLTGG----GKVIIIDEFDRLgLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTK 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1958668038 144 EDICSVLS-------TVCKKEGLALPSKLARRLAEKSCRNLRKALLMC 184
Cdd:PHA02544  163 EEQIEMMKqmivrckGILEAEGVEVDMKVLAALVKKNFPDFRRTINEL 210
PRK14962 PRK14962
DNA polymerase III subunits gamma and tau; Provisional
 80-227 2.01e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237869 [Multi-domain]  Cd Length: 472  Bit Score: 61.32  E-value: 2.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  80 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGL 159
Cdd:PRK14962  115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI 194

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958668038 160 ALPSKLARRLAEKSCRNLRKALLMCEacrvQQYPFTEDQEIPETdwevyLRETAnAIVSQQTPQRLLE 227
Cdd:PRK14962  195 EIDREALSFIAKRASGGLRDALTMLE----QVWKFSEGKITLET-----VHEAL-GLIPIEVVRDYIN 252
PRK14953 PRK14953
DNA polymerase III subunits gamma and tau; Provisional
 83-181 6.29e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237867 [Multi-domain]  Cd Length: 486  Bit Score: 53.67  E-value: 6.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  83 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALP 162
Cdd:PRK14953  120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE 199

                          90
                  ....*....|....*....
gi 1958668038 163 SKLARRLAEKSCRNLRKAL 181
Cdd:PRK14953  200 EKALDLLAQASEGGMRDAA 218
PRK04195 PRK04195
replication factor C large subunit; Provisional
 1-186 7.71e-08

replication factor C large subunit; Provisional


Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 53.39  E-value: 7.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038   1 MSLWVDKYRPSSLARLDYHKEQAAQLRN-----LTPSKKKIEI----------ST---IASNYHLEV---NPSDAGNSDr 59
Cdd:PRK04195    1 MMPWVEKYRPKTLSDVVGNEKAKEQLREwieswLKGKPKKALLlygppgvgktSLahaLANDYGWEVielNASDQRTAD- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  60 vVIQEMLKTVAQSQQLeTSSQRdfKVVLLTEVD---------------KLTKDAQHALRRTMEKYMStcrlilccnstsK 124
Cdd:PRK04195   80 -VIERVAGEAATSGSL-FGARR--KLILLDEVDgihgnedrggarailELIKKAKQPIILTANDPYD------------P 143

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958668038 125 VIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEA 186
Cdd:PRK04195  144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQA 205
PRK14961 PRK14961
DNA polymerase III subunits gamma and tau; Provisional
 31-185 7.81e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184925 [Multi-domain]  Cd Length: 363  Bit Score: 52.89  E-value: 7.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  31 PSKKKIEISTIASNYHLEVNPSDAGNSDRVviqEMLKTVAQSQQLETSSQRdFKVVLLTEVDKLTKDAQHALRRTMEKYM 110
Cdd:PRK14961   72 PCRKCIICKEIEKGLCLDLIEIDAASRTKV---EEMREILDNIYYSPSKSR-FKVYLIDEVHMLSRHSFNALLKTLEEPP 147

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958668038 111 STCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCE 185
Cdd:PRK14961  148 QHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLE 222
PRK07940 PRK07940
DNA polymerase III subunit delta'; Validated
 62-170 8.82e-08

DNA polymerase III subunit delta'; Validated


Pssm-ID: 236134 [Multi-domain]  Cd Length: 394  Bit Score: 52.99  E-value: 8.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  62 IQEMLKTVAQSQQLETSSQrdFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAP 141
Cdd:PRK07940   99 VDEVRELVTIAARRPSTGR--WRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTP 176

                          90       100
                  ....*....|....*....|....*....
gi 1958668038 142 SIEDICSVLStvcKKEGlaLPSKLARRLA 170
Cdd:PRK07940  177 SVEAVAEVLV---RRDG--VDPETARRAA 200
PRK05564 PRK05564
DNA polymerase III subunit delta'; Validated
 82-182 3.78e-06

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180132 [Multi-domain]  Cd Length: 313  Bit Score: 47.72  E-value: 3.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  82 DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICS-------VLSTVC 154
Cdd:PRK05564   93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKfisykynDIKEEE 172

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958668038 155 KKEGLA----LPSKLARRLAEKSCRNLRKALL 182
Cdd:PRK05564  173 KKSAIAfsdgIPGKVEKFIEDDSLKNIRNMSL 204
DNA_pol3_delta2 pfam13177
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ...
 62-142 1.03e-05

DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.


Pssm-ID: 433013 [Multi-domain]  Cd Length: 161  Bit Score: 44.89  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  62 IQEMLKTVAQSqqletSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAP 141
Cdd:pfam13177  86 IRELQKEFSKS-----PYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160


                  .
gi 1958668038 142 S 142
Cdd:pfam13177 161 S 161
PRK14970 PRK14970
DNA polymerase III subunits gamma and tau; Provisional
 83-226 1.60e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184934 [Multi-domain]  Cd Length: 367  Bit Score: 46.02  E-value: 1.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  83 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALP 162
Cdd:PRK14970  109 YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE 188

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958668038 163 SKLARRLAEKSCRNLRKALLMCEacRVQQY--------PFTEDQEIpeTDWEVYLRETaNAIVSQQTPQRLL 226
Cdd:PRK14970  189 DDALHIIAQKADGALRDALSIFD--RVVTFcgknitrqAVTENLNI--LDYDTYINVT-DLILENKIPELLL 255
PRK09112 PRK09112
DNA polymerase III subunit delta'; Validated
 77-183 2.39e-05

DNA polymerase III subunit delta'; Validated


Pssm-ID: 169667 [Multi-domain]  Cd Length: 351  Bit Score: 45.41  E-value: 2.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  77 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVckk 156
Cdd:PRK09112  136 TSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL--- 212

                          90       100
                  ....*....|....*....|....*....
gi 1958668038 157 eGLALPS--KLARRLAEKSCRNLRKALLM 183
Cdd:PRK09112  213 -GSSQGSdgEITEALLQRSKGSVRKALLL 240
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
83-226 2.41e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.54  E-value: 2.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  83 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALP 162
Cdd:PRK14971  122 YKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE 201

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958668038 163 SKLARRLAEKSCRNLRKALLMCEacrvQQYPFTED----QEIPET----DWEVYLRETaNAIVSQQTPQRLL 226
Cdd:PRK14971  202 PEALNVIAQKADGGMRDALSIFD----QVVSFTGGnityKSVIENlnilDYDYYFRLT-DALLAGKVSDSLL 268
PRK14957 PRK14957
DNA polymerase III subunits gamma and tau; Provisional
 79-181 2.96e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184921 [Multi-domain]  Cd Length: 546  Bit Score: 45.46  E-value: 2.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  79 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEG 158
Cdd:PRK14957  116 SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN 195

                          90       100
                  ....*....|....*....|...
gi 1958668038 159 LALPSKLARRLAEKSCRNLRKAL 181
Cdd:PRK14957  196 INSDEQSLEYIAYHAKGSLRDAL 218
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 66-273 3.14e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 45.47  E-value: 3.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  66 LKTVAQSQQLETSSQRdFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIED 145
Cdd:PRK08691  104 IREVLENAQYAPTAGK-YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQ 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 146 ICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKAL-LMCEACRVQQYPFTED---QEIPETDWEvYLRETANAIVSQQT 221
Cdd:PRK08691  183 VADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALsLLDQAIALGSGKVAENdvrQMIGAVDKQ-YLYELLTGIINQDG 261

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038 222 PQRLLEVR-------------GRLYELLTH-----CIPPEVIMKGLLSELLHNCDGQLKGEVAQMaaYYE 273
Cdd:PRK08691  262 AALLAKAQemaacavgfdnalGELAILLQQlaliqAVPSALAHDDPDSDILHRLAQTISGEQIQL--YYQ 329
PRK14964 PRK14964
DNA polymerase III subunits gamma and tau; Provisional
 72-185 4.84e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237870 [Multi-domain]  Cd Length: 491  Bit Score: 44.78  E-value: 4.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  72 SQQLETSSQrdFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLS 151
Cdd:PRK14964  108 SCYLPISSK--FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLV 185

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958668038 152 TVCKKEGLALPSKLARRLAEKSCRNLRKALLMCE 185
Cdd:PRK14964  186 DIAKKENIEHDEESLKLIAENSSGSMRNALFLLE 219
PRK07132 PRK07132
DNA polymerase III subunit delta'; Validated
 75-151 4.85e-05

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180855 [Multi-domain]  Cd Length: 299  Bit Score: 44.33  E-value: 4.85e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958668038  75 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLS 151
Cdd:PRK07132   83 FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159
PRK06305 PRK06305
DNA polymerase III subunits gamma and tau; Validated
 41-180 8.45e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 180523 [Multi-domain]  Cd Length: 451  Bit Score: 43.99  E-value: 8.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  41 IASNYHLEVNPSDaGNSDRVV--IQEMLKTVaqsqqLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILC 118
Cdd:PRK06305   84 ISSGTSLDVLEID-GASHRGIedIRQINETV-----LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958668038 119 CNSTSKVIPPIRSRC---LAIRVPAPSIEDicsVLSTVCKKEGLALPSKLARRLAEKSCRNLRKA 180
Cdd:PRK06305  158 TTEIHKIPGTILSRCqkmHLKRIPEETIID---KLALIAKQEGIETSREALLPIARAAQGSLRDA 219
PRK05707 PRK05707
DNA polymerase III subunit delta'; Validated
 69-145 8.50e-05

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180215 [Multi-domain]  Cd Length: 328  Bit Score: 43.54  E-value: 8.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  69 VAQSQQL-----ETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSI 143
Cdd:PRK05707   88 VDQVRELvsfvvQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167


                  ..
gi 1958668038 144 ED 145
Cdd:PRK05707  168 EE 169
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 84-176 8.85e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 43.68  E-value: 8.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  84 KVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGL-ALP 162
Cdd:PRK14963  118 KVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGReAEP 197

                          90
                  ....*....|....*.
gi 1958668038 163 SKLA--RRLAEKSCRN 176
Cdd:PRK14963  198 EALQlvARLADGAMRD 213
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
79-181 1.01e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 43.88  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  79 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEG 158
Cdd:PRK14960  115 TQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ 194

                          90       100
                  ....*....|....*....|...
gi 1958668038 159 LALPSKLARRLAEKSCRNLRKAL 181
Cdd:PRK14960  195 IAADQDAIWQIAESAQGSLRDAL 217
HLD_clamp_RFC cd18140
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ...
 141-206 1.85e-04

helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.


Pssm-ID: 350842 [Multi-domain]  Cd Length: 63  Bit Score: 39.05  E-value: 1.85e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958668038 141 PSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQqypfteDQEIPETDWE 206
Cdd:cd18140     1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAG------GGVITEEDVY 60
PRK06645 PRK06645
DNA polymerase III subunits gamma and tau; Validated
 80-188 5.06e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 180643 [Multi-domain]  Cd Length: 507  Bit Score: 41.38  E-value: 5.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  80 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGL 159
Cdd:PRK06645  126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205

                          90       100
                  ....*....|....*....|....*....
gi 1958668038 160 ALPSKLARRLAEKSCRNLRKALLMCEACR 188
Cdd:PRK06645  206 KTDIEALRIIAYKSEGSARDAVSILDQAA 234
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
83-181 2.08e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  83 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALP 162
Cdd:PRK12323  125 FKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE 204

                          90
                  ....*....|....*....
gi 1958668038 163 SKLARRLAEKSCRNLRKAL 181
Cdd:PRK12323  205 VNALRLLAQAAQGSMRDAL 223
PRK14969 PRK14969
DNA polymerase III subunits gamma and tau; Provisional
 47-181 2.10e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237873 [Multi-domain]  Cd Length: 527  Bit Score: 39.73  E-value: 2.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958668038  47 LEVnpsDAGNSDRVviQEMLKTVAQSQQLETSSQrdFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVI 126
Cdd:PRK14969   91 IEV---DAASNTQV--DAMRELLDNAQYAPTRGR--FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958668038 127 PPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKAL 181
Cdd:PRK14969  164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDAL 218
PRK07399 PRK07399
DNA polymerase III subunit delta'; Validated
 84-150 5.01e-03

DNA polymerase III subunit delta'; Validated


Pssm-ID: 236011 [Multi-domain]  Cd Length: 314  Bit Score: 37.96  E-value: 5.01e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958668038  84 KVVLLTEVDKLTKDAQHALRRTMEKyMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVL 150
Cdd:PRK07399  126 KVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVL 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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