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Conserved domains on  [gi|1958664510|ref|XP_038943876|]
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ubiquitin-like-conjugating enzyme ATG3 isoform X1 [Rattus norvegicus]

Protein Classification

ATG3/ATG10 family protein( domain architecture ID 10512533)

ATG3/ATG10 family protein similar to ubiquitin-like-conjugating enzymes ATG3 and ATG10, which are E2 conjugating enzymes required for the cytoplasm to vacuole transport (Cvt), and autophagy

CATH:  3.30.1460.50
Gene Ontology:  GO:0019787|GO:0015031|GO:0006914|GO:0019776
PubMed:  20723759|23142976|23255127
SCOP:  3000727

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Autophagy_act_C pfam03987
Autophagocytosis associated protein, active-site domain; Autophagocytosis is a ...
 108-221 1.10e-51

Autophagocytosis associated protein, active-site domain; Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex.


:

Pssm-ID: 461120  Cd Length: 151  Bit Score: 164.43  E-value: 1.10e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958664510 108 LQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLpPPPMCSVHPCRHAEVMKKII 187
Cdd:pfam03987  42 VPCRTYDYHITYSPSYQVPVLYFRGYDEDGKPLSLDEVYEDISPDYANKTVTQEEHPHL-GLPWFSIHPCKTAEVMKTLL 120

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958664510 188 EtvaEGGGELGVHMYLLIFLKFVQAVIPTIEYDY 221
Cdd:pfam03987 121 E---DGGKEIRVDQYLVIWLSFVGSVVPLIEPDY 151
 
Name Accession Description Interval E-value
Autophagy_act_C pfam03987
Autophagocytosis associated protein, active-site domain; Autophagocytosis is a ...
 108-221 1.10e-51

Autophagocytosis associated protein, active-site domain; Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex.


Pssm-ID: 461120  Cd Length: 151  Bit Score: 164.43  E-value: 1.10e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958664510 108 LQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLpPPPMCSVHPCRHAEVMKKII 187
Cdd:pfam03987  42 VPCRTYDYHITYSPSYQVPVLYFRGYDEDGKPLSLDEVYEDISPDYANKTVTQEEHPHL-GLPWFSIHPCKTAEVMKTLL 120

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958664510 188 EtvaEGGGELGVHMYLLIFLKFVQAVIPTIEYDY 221
Cdd:pfam03987 121 E---DGGKEIRVDQYLVIWLSFVGSVVPLIEPDY 151
 
Name Accession Description Interval E-value
Autophagy_act_C pfam03987
Autophagocytosis associated protein, active-site domain; Autophagocytosis is a ...
 108-221 1.10e-51

Autophagocytosis associated protein, active-site domain; Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex.


Pssm-ID: 461120  Cd Length: 151  Bit Score: 164.43  E-value: 1.10e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958664510 108 LQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLpPPPMCSVHPCRHAEVMKKII 187
Cdd:pfam03987  42 VPCRTYDYHITYSPSYQVPVLYFRGYDEDGKPLSLDEVYEDISPDYANKTVTQEEHPHL-GLPWFSIHPCKTAEVMKTLL 120

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958664510 188 EtvaEGGGELGVHMYLLIFLKFVQAVIPTIEYDY 221
Cdd:pfam03987 121 E---DGGKEIRVDQYLVIWLSFVGSVVPLIEPDY 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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