|
Name |
Accession |
Description |
Interval |
E-value |
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
227-1563 |
4.01e-117 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 410.17 E-value: 4.01e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 227 DSAFWLSWgllYAGFVFVMALS---LALVIKSVQFLILTSFTVVFSLFLLYGLSMISLAFLMSVLVRKSVLTGLT--VFL 301
Cdd:TIGR01257 693 NAVIWCTW---FLDSFSIMSMSiflLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACsgVIY 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 302 LTIFWGSLGFTALYRYLPAPLEWTLSLFSPFAFTLGMAQLLRVD-------YDLNSNAPPDPAGSSNLIAATnfMLAFDA 374
Cdd:TIGR01257 770 FTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEeqglglqWSNIGNSPLEGDEFSFLLSMK--MMLLDA 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 375 LLYLALTMYFEKVLPNEYGHQRSPLFFLKPSFWV-------------QPRKPAHVILEDGIDPAPLSGGSFEPVSPEFhg 441
Cdd:TIGR01257 848 ALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLggegcstreeralEKTEPLTEEMEDPEHPEGINDSFFERELPGL-- 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 442 KESIRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSemADLESV 521
Cdd:TIGR01257 926 VPGVCVKNLVKIFE--PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAV 1001
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:TIGR01257 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK 1081
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 602 IFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLKKKWGVGYHLSLQL 681
Cdd:TIGR01257 1082 VVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVR 1161
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 682 K------------------------------EVCVPENI--------TSLVKQHIPEAKLSAERERTLVYTLPLETTYR- 722
Cdd:TIGR01257 1162 KmkniqsqrggcegtcsctskgfstrcparvDEITPEQVldgdvnelMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQr 1241
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 723 -----FPELCQSLDScpgLGIDSYGVSMTTLNEVFLKLEGKSaieEPEVDIVGEGQTER---------SGDTERLMEMEQ 788
Cdd:TIGR01257 1242 ayaslFRELEETLAD---LGLSSFGISDTPLEEIFLKVTEDA---DSGSLFAGGAQQKRenanlrhpcSGPTEKAGQTPQ 1315
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 789 TLSTLT--------------ETKKKTGSLALWRQQTCAIAKARLLKLKHERKTLLSVLLVLGVALCPLLFESIKMKILQS 854
Cdd:TIGR01257 1316 ASHTCSpgqpaahpegqpppEPEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALMLSIIIP 1395
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 855 AY----TWDLSP----HSYFLAPGQQPHGM--------------------------------------------LTQLLI 882
Cdd:TIGR01257 1396 PFgeypALTLHPwmygQQYTFFSMDEPNSEhlevladvllnkpgfgnrclkeewlpeypcgnstpwktpsvspnITHLFQ 1475
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 883 INK-----------------------------------------------TEASIDDFI---------QSVERQNIALEV 906
Cdd:TIGR01257 1476 KQKwtaahpspscrcstrekltmlpecpegagglpppqrtqrsteilqdlTDRNISDFLvktypalirSSLKSKFWVNEQ 1555
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 907 DASGARDGTDDPS--FNGA------------LTVSGG-----------------EKNHSFSLACNTKRLNCFPVLMDVLS 955
Cdd:TIGR01257 1556 RYGGISIGGKLPAipITGEalvgflsdlgqmMNVSGGpvtreaskempdflkhlETEDNIKVWFNNKGWHALVSFLNVAH 1635
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 956 NGLLGMVKPSARirtDRSTYFVDEITNPL----QQLGKTTFWLTLTSA------------CPPYIAMSSVTDYKNKVWFQ 1019
Cdd:TIGR01257 1636 NAILRASLPKDR---DPEEYGITVISQPLnltkEQLSEITVLTTSVDAvvaicvifamsfVPASFVLYLIQERVNKAKHL 1712
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1020 LRVSGLFPSAYWFGQALVDIPLYC-----FVFLFMSLMDYLLGFPD-----ATLIVITHVLQIPcsVGYAISLIFLTYVI 1089
Cdd:TIGR01257 1713 QFISGVSPTTYWLTNFLWDIMNYAvsaglVVGIFIGFQKKAYTSPEnlpalVALLMLYGWAVIP--MMYPASFLFDVPST 1790
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1090 SFISRK------GKKNSGIwslcFYIITMFSVVAMLLDFNvdAILYCIIFLLPPSTLIGCLI---LSMHLF-IYRISREE 1159
Cdd:TIGR01257 1791 AYVALScanlfiGINSSAI----TFVLELFENNRTLLRFN--AMLRKLLIVFPHFCLGRGLIdlaLSQAVTdVYAQFGEE 1864
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1160 SIVEPF-----------------LVFLIPLLHVFIFIFTlrclEWkfgKKTMRKDPIFrisPRNNDVHQnpeepegeded 1222
Cdd:TIGR01257 1865 HSANPFqwdligknlvamavegvVYFLLTLLIQHHFFLS----RW---IAEPAKEPIF---DEDDDVAE----------- 1923
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1223 vqmERMRTASALASTSfdekpVIVASCLRKEYAGkwkhclskkKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMIS 1302
Cdd:TIGR01257 1924 ---ERQRIISGGNKTD-----ILRLNELTKVYSG---------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLT 1986
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1303 GDTKSTAGQVLLKG----SREGDALGFLGYCPQENALWPNLTVKEHLEVFATVLGLskshAAVTITRLAD----ALQLQD 1374
Cdd:TIGR01257 1987 GDTTVTSGDATVAGksilTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV----PAEEIEKVANwsiqSLGLSL 2062
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1375 QLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNtDRGALLTTHYMAEAEALCDRVA 1454
Cdd:TIGR01257 2063 YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLA 2141
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1455 ILVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTLEQVELLNTEVLRL-----FPQAARQERYSPLMVYKLPVEDvqpLSQA 1529
Cdd:TIGR01257 2142 IMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQffqgnFPGSVQRERHYNMLQFQVSSSS---LARI 2218
|
1610 1620 1630
....*....|....*....|....*....|....
gi 1958662872 1530 FFKLEKVKQTFDLEEYSLSQSTLEQVFLELSKEQ 1563
Cdd:TIGR01257 2219 FQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQ 2252
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
445-668 |
1.96e-84 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 275.54 E-value: 1.96e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynNRLSEMADLESVFRI 524
Cdd:cd03263 1 LQIRNLTKTYKKGTKP--AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI--NGYSIRTDRKAARQS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLK 668
Cdd:cd03263 157 LDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
1250-1471 |
3.16e-82 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 268.99 E-value: 3.16e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1250 LRKEYagkwkhclsKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGF 1325
Cdd:cd03263 6 LTKTY---------KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGysirTDRKAARQS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1326 LGYCPQENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILL 1405
Cdd:cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIIKNtdRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLK 1471
Cdd:cd03263 157 LDEPTSGLDPASRRAIWDLILEVRKG--RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
1262-1474 |
1.13e-71 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 239.58 E-value: 1.13e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALW 1336
Cdd:COG1131 6 LTKRyGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGedvaRDPAEVRRRIGYVPQEPALY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:COG1131 86 PDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1417 GQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKF 1474
Cdd:COG1131 166 ARRELWELLRE-LAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
445-663 |
3.91e-70 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 235.34 E-value: 3.91e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmaDLESVFRI 524
Cdd:COG1131 1 IEVRGLTKRYGDKT----ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR--DPAEVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:COG1131 75 IGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLI 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG1131 155 LDEPTSGLDPEARRELWELLRElAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGT 214
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1262-1477 |
7.54e-60 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 205.86 E-value: 7.54e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALW 1336
Cdd:COG4555 7 LSKKyGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGedvrKEPREARRQIGVLPDERGLY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:COG4555 87 DRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVM 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1417 GQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKD 1477
Cdd:COG4555 167 ARRLLREILRA-LKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
445-663 |
1.58e-58 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 202.01 E-value: 1.58e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI--YNNRLSEMADLESVf 522
Cdd:COG4555 2 IEVENLSKKYGKVP----ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIdgEDVRKEPREARRQI- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 risGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:COG4555 77 ---GVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG4555 154 LLLDEPTNGLDVMARRLLREILRAlKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGS 215
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
1270-1559 |
1.90e-56 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 198.38 E-value: 1.90e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDAL-GFLGYCPQENALWPNLTVKEHL 1345
Cdd:TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGydvVREPRKVrRSIGIVPQYASVDEDLTGRENL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 EVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAI 1425
Cdd:TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1426 RAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYlLEMKVKTLEQVELLNTEVLRLFP--Q 1503
Cdd:TIGR01188 168 RA-LKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSMLIAELGetG 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1504 AARQERYSPLMVYKLPVEDvqPLSQAFFKLEKVKQT-FDLEEYSLSQSTLEQVFLEL 1559
Cdd:TIGR01188 246 LGLLAVTVDSDRIKILVPD--GDETVPEIVEAAIRNgIRIRSISTERPSLDDVFLKL 300
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1262-1461 |
3.24e-56 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 192.61 E-value: 3.24e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALW 1336
Cdd:cd03230 6 LSKRyGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGkdikKEPEEVKRRIGYLPEEPSLY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLEvfatvlglskshaavtitrladalqlqdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:cd03230 86 ENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPE 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958662872 1417 GQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03230 130 SRREFWELLRE-LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1262-1564 |
1.02e-54 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 193.40 E-value: 1.02e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKKKA-KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREG-DALGFLGYCPQENALWPNL 1339
Cdd:COG4152 7 LTKRFGdKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDpEDRRRIGYLPEERGLYPKM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:COG4152 87 KVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1420 QIWQAIRAIIkntDRGA--LLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLlemKVKTLEQVELLNTev 1497
Cdd:COG4152 167 LLKDVIRELA---AKGTtvIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTL---RLEADGDAGWLRA-- 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1498 lrlFPQAARQERYSPLMVYKLP-VEDVQPLsqaffkLEKVKQTFDLEEYSLSQSTLEQVFLELSKEQE 1564
Cdd:COG4152 239 ---LPGVTVVEEDGDGAELKLEdGADAQEL------LRALLARGPVREFEEVRPSLNEIFIEVVGEKA 297
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
445-658 |
4.34e-54 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 186.45 E-value: 4.34e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmaDLESVFRI 524
Cdd:cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK--EPEEVKRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRlfakirgvppqevekevqrvllelemkniqdilarnLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03230 75 IGYLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLI 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03230 119 LDEPTSGLDPESRREFWELLRELKKEGKtILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1270-1471 |
2.44e-52 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 183.34 E-value: 2.44e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALWPNLTVKEHL 1345
Cdd:cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGhdvvREPREVRRRIGIVFQDLSVDDELTGWENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 EVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAI 1425
Cdd:cd03265 95 YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 1426 RAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLK 1471
Cdd:cd03265 175 EKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1244-1562 |
7.44e-49 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 177.20 E-value: 7.44e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1244 VIVASCLRKEY---------AGKWKHCLS-KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVL 1313
Cdd:COG4586 1 IIEVENLSKTYrvyekepglKGALKGLFRrEYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1314 lkgsregdalgFLGYCP----------------QENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLK 1377
Cdd:COG4586 81 -----------VLGYVPfkrrkefarrigvvfgQRSQLWWDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLD 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1378 SPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIikNTDRGA--LLTTHYMAEAEALCDRVAI 1455
Cdd:COG4586 150 TPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEY--NRERGTtiLLTSHDMDDIEALCDRVIV 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1456 LVSGRLRCIGSIQHLKSKFGKDyllemkvKTLEqVELLNTEVLRLFPQAARQERYSPLMVyKLPVEDVQPLSQAffkLEK 1535
Cdd:COG4586 228 IDHGRIIYDGSLEELKERFGPY-------KTIV-LELAEPVPPLELPRGGEVIEREGNRV-RLEVDPRESLAEV---LAR 295
|
330 340
....*....|....*....|....*..
gi 1958662872 1536 VKQTFDLEEYSLSQSTLEQVFLELSKE 1562
Cdd:COG4586 296 LLARYPVRDLTIEEPPIEEVIRRIYKE 322
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
460-757 |
8.58e-48 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 173.34 E-value: 8.58e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 460 KIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLesVFRISGVCPQSNVQFDFLT 539
Cdd:TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK--VRRSIGIVPQYASVDEDLT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 540 VRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHR 619
Cdd:TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 620 VWNLL-KERKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLKKKWGvGYHLSLQLKEVCVPENITSLVKQHI 698
Cdd:TIGR01188 163 IWDYIrALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG-KDTLESRPRDIQSLKVEVSMLIAEL 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 699 PEAKLSAER-----ERTLVYTLPLETTyrFPELCQSLDScPGLGIDSYGVSMTTLNEVFLKLEG 757
Cdd:TIGR01188 242 GETGLGLLAvtvdsDRIKILVPDGDET--VPEIVEAAIR-NGIRIRSISTERPSLDDVFLKLTG 302
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
445-658 |
1.36e-47 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 169.98 E-value: 1.36e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLE-SVFR 523
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKElAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ---ISGVCPQSNVqFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDS 600
Cdd:cd03255 81 rrhIGFVFQSFNL-LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 601 QIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADiLADRKVFISRGKL 658
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRElnKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1266-1465 |
2.37e-47 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 169.00 E-value: 2.37e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1266 KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALG-FLGYCPQENALWPNLTVKEH 1344
Cdd:cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARnRIGYLPEERGLYPKMKVIDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQA 1424
Cdd:cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDV 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958662872 1425 IRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03269 171 IRE-LARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
445-659 |
3.03e-47 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 168.53 E-value: 3.03e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGqITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynNRLSEMADLESVFRI 524
Cdd:cd03264 1 LQLENLTKRYGKK----RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI--DGQDVLKQPQKLRRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKLK 659
Cdd:cd03264 154 VDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
446-657 |
1.16e-46 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 166.87 E-value: 1.16e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGKPSKieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRIS 525
Cdd:cd03225 1 ELKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL-SLKELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 GVCPQ-SNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03225 78 GLVFQnPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGK 657
Cdd:cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKtIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
1261-1462 |
3.71e-45 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 162.39 E-value: 3.71e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1261 CLSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS---REGDALGFLGYCPQENALW 1336
Cdd:cd03268 5 DLTKTyGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKsyqKNIEALRRIGALIEAPGFY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLEVFATVLGLSKShaavTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:cd03268 85 PNLTARENLRLLARLLGIRKK----RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 1417 GQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLR 1462
Cdd:cd03268 161 GIKELRELILS-LRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
445-663 |
5.08e-45 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 162.89 E-value: 5.08e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmADLESVFRI 524
Cdd:COG1122 1 IELENLSFSY---PGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITK-KNLRELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQ-SNVQFDFLTVRENLrLFA-KIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLtfgtAILG---- 598
Cdd:COG1122 77 VGLVFQnPDDQLFAPTVEEDV-AFGpENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRV----AIAGvlam 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG1122 152 EPEVLVLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGT 217
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
445-668 |
5.31e-44 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 159.46 E-value: 5.31e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynNRLSEMADLESVFRI 524
Cdd:cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV--AGHDVVREPREVRRR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLK 668
Cdd:cd03265 155 LDEPTIGLDPQTRAHVWEYIEKlkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1268-1566 |
9.68e-44 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 161.90 E-value: 9.68e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALWPNLTVKE 1343
Cdd:PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGepvpSRARHARQRVGVVPQFDNLDPDFTVRE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1423
Cdd:PRK13537 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1424 AIRAIIKntdRGA--LLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL-KSKFGKDYllemkvktleqVELLNTE--VL 1498
Cdd:PRK13537 180 RLRSLLA---RGKtiLLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALiESEIGCDV-----------IEIYGPDpvAL 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1499 R--LFPQAARQE-RYSPLMVYklpVEDVQPLSQAffklekVKQTFDLeEYSLSQSTLEQVFLELSKEQEMD 1566
Cdd:PRK13537 246 RdeLAPLAERTEiSGETLFCY---VRDPEPLHAR------LKGRAGL-RYLHRPANLEDVFLRLTGREMQD 306
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
445-658 |
2.26e-42 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 155.20 E-value: 2.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLE-SVFR 523
Cdd:COG1136 5 LELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERElARLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 isgvcpQSNV----QF----DFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTA 595
Cdd:COG1136 85 ------RRHIgfvfQFfnllPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 596 ILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADIlADRKVFISRGKL 658
Cdd:COG1136 159 LVNRPKLILADEPTGNLDSKTGEEVLELLRElnRELGTTIVMVTHDPELAAR-ADRVIRLRDGRI 222
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
445-658 |
2.87e-42 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 154.30 E-value: 2.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNnrlSEMADLESVFRI 524
Cdd:cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG---KSYQKNIEALRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPpqevEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLL-KERKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03268 150 LDEPTNGLDPDGIKELRELIlSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
445-662 |
7.78e-42 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 153.29 E-value: 7.78e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmADLESVFRI 524
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03266 81 -GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:cd03266 160 LDEPTTGLDVMATRALREFIRQlRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1268-1462 |
9.16e-42 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 152.73 E-value: 9.16e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGeILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDAL-GFLGYCPQENALWPNLTVKE 1343
Cdd:cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGqdvLKQPQKLrRRIGYLPQEFGVYPNFTVRE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEgqQQIwq 1423
Cdd:cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE--ERI-- 167
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958662872 1424 AIRAIIKN--TDRGALLTTHYMAEAEALCDRVAILVSGRLR 1462
Cdd:cd03264 168 RFRNLLSElgEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1264-1461 |
1.93e-41 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 152.87 E-value: 1.93e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----------SREGDALGflgycpQE 1332
Cdd:cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGlvpwkrrkkflRRIGVVFG------QK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 NALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:cd03267 104 TQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1413 LDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03267 184 LDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
445-655 |
1.97e-41 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 152.24 E-value: 1.97e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynnrlsemaDLESVFRI 524
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV---------DGEPVTGP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 S---GVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:cd03293 72 GpdrGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 602 IFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISR 655
Cdd:cd03293 152 VLLLDEPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1264-1465 |
2.04e-41 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 152.14 E-value: 2.04e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALWPNL 1339
Cdd:cd03266 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGfdvvKEPAEARRRLGFVSDSTGLYDRL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:cd03266 94 TARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 1420 QIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03266 174 ALREFIRQ-LRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
445-657 |
4.94e-41 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 150.32 E-value: 4.94e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmaDLESVFRI 524
Cdd:COG4133 3 LEAENLSCRRGERL----LFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRD--AREDYRRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEkeVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:COG4133 77 LAYLGHADGLKPELTVRENLRFWAALYGLRADREA--IDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQfmDEADILADRKVFISRGK 657
Cdd:COG4133 155 LDEPFTALDAAGVALLAELIAAHLARgGAVLLTTH--QPLELAAARVLDLGDFK 206
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
445-656 |
1.53e-40 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 151.01 E-value: 1.53e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADlesvfRI 524
Cdd:COG1116 8 LELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGP-----DR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:COG1116 83 -GVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLL-----KERKAdrvVLFSTQFMDEADILADRKVFISRG 656
Cdd:COG1116 162 MDEPFGALDALTRERLQDELlrlwqETGKT---VLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1268-1460 |
4.13e-39 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 149.60 E-value: 4.13e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALWPNLTVKE 1343
Cdd:PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGvpvpARARLARARIGVVPQFDNLDLEFTVRE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1423
Cdd:PRK13536 134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958662872 1424 AIRAIIKntdRGA--LLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:PRK13536 214 RLRSLLA---RGKtiLLTTHFMEEAERLCDRLCVLEAGR 249
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1272-1441 |
2.04e-38 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 143.00 E-value: 2.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALGFLGYCPQENALWPNLTVKEHLEV 1347
Cdd:COG4133 19 SGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGepirDAREDYRRRLAYLGHADGLKPELTVRENLRF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1348 FATVLGLSKSHAAvtITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRA 1427
Cdd:COG4133 99 WAALYGLRADREA--IDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAA 176
|
170
....*....|....*.
gi 1958662872 1428 iikNTDRG--ALLTTH 1441
Cdd:COG4133 177 ---HLARGgaVLLTTH 189
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
445-658 |
2.45e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 143.48 E-value: 2.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGL-----SVPTKGSVTIYN-NRLSEMADL 518
Cdd:cd03260 1 IELRDLNVYYGDK----HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGkDIYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 ESVFRISGVCPQSNVQFDfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLEL-----EMKNIQDilARNLSGGQKRKLTFG 593
Cdd:cd03260 77 LELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEALRKaalwdEVKDRLH--ALGLSGGQQQRLCLA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 594 TAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
445-657 |
1.82e-37 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 139.06 E-value: 1.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRI 524
Cdd:cd03228 1 IEFKNVSFSYPGRPKPV--LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL-DLESLRKN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFlTVRENLrlfakirgvppqevekevqrvllelemkniqdilarnLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03228 78 IAYVPQDPFLFSG-TIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILI 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADiLADRKVFISRGK 657
Cdd:cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
445-658 |
1.95e-37 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 141.10 E-value: 1.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESVF 522
Cdd:cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLseAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEvqRVLLELEM---KNIQDILARNLSGGQKRKLTFGTAILGD 599
Cdd:cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE--IVLEKLEAvglRGAEDLYPAELSGGMKKRVALARALALD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNL---LKERKADRVVLFSTQfMDEADILADRKVFISRGKL 658
Cdd:cd03261 155 PELLLYDEPTAGLDPIASGVIDDLirsLKKELGLTSIMVTHD-LDTAFAIADRIAVLYDGKI 215
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
464-610 |
4.75e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 137.01 E-value: 4.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRLSEMADLESVFRISGVCPQSNVQFDFLTVREN 543
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILL-DGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 544 LRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARN----LSGGQKRKLTFGTAILGDSQIFLLDEPTA 610
Cdd:pfam00005 80 LRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
445-658 |
7.04e-37 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 139.77 E-value: 7.04e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEY-----------------KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI 507
Cdd:cd03267 1 IEVSNLSKSYrvyskepgligslkslfKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 508 YNNRLSEMADlESVFRISGVCPQSN-VQFDfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQ 586
Cdd:cd03267 81 AGLVPWKRRK-KFLRRIGVVFGQKTqLWWD-LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 587 KRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR--VVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03267 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1270-1460 |
7.76e-37 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 139.11 E-value: 7.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----------SREGdalgfLGYCPQENALWPN 1338
Cdd:cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGrditglppherARAG-----IGYVPEGRRIFPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKEHLEVFATVLGLSKSHAavtitRLADALQ----LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLD 1414
Cdd:cd03224 90 LTVEENLLLGAYARRRAKRKA-----RLERVYElfprLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLA 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 1415 PEGQQQIWQAIRAIIKnTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:cd03224 165 PKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
445-658 |
1.27e-36 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 138.04 E-value: 1.27e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLEsvfRI 524
Cdd:cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER---RN 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03259 154 LDEPLSALDAKLREELREELKElqRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
444-658 |
2.66e-36 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 141.75 E-value: 2.66e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRLseMADLESVFR 523
Cdd:COG3839 3 SLELENVSKSYGGV----EALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILI-GGRD--VTDLPPKDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 -ISGVcPQSNVQFDFLTVRENLrLFA-KIRGVPPQEVEKEVQRVlleLEMKNIQDILAR---NLSGGQKRKLTFGTAILG 598
Cdd:COG3839 76 nIAMV-FQSYALYPHMTVYENI-AFPlKLRKVPKAEIDRRVREA---AELLGLEDLLDRkpkQLSGGQRQRVALGRALVR 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:COG3839 151 EPKVFLLDEPLSNLDAKLRVEMRAEIKRlhRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRI 212
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
446-657 |
3.38e-36 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 134.68 E-value: 3.38e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRIS 525
Cdd:cd00267 1 EIENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL-PLEELRRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 GVCPQsnvqfdfltvrenlrlfakirgvppqevekevqrvllelemkniqdilarnLSGGQKRKLTFGTAILGDSQIFLL 605
Cdd:cd00267 76 GYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 606 DEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGK 657
Cdd:cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRtVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
444-706 |
5.04e-36 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 140.74 E-value: 5.04e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVfR 523
Cdd:PRK13536 41 AIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA-R 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 IsGVCPQ-SNVQFDFlTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:PRK13536 116 I-GVVPQfDNLDLEF-TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKERKA-DRVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLKKKwgvgyHLSLQL 681
Cdd:PRK13536 194 LILDEPTTGLDPHARHLIWERLRSLLArGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE-----HIGCQV 268
|
250 260
....*....|....*....|....*..
gi 1958662872 682 KEVC--VPENITSLVKQHIPEAKLSAE 706
Cdd:PRK13536 269 IEIYggDPHELSSLVKPYARRIEVSGE 295
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
445-696 |
5.26e-36 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 138.33 E-value: 5.26e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:TIGR04520 1 IEVENVSFSYPE--SEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLDEENLWEIRKK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQS--NvQFDFLTVR-------ENLrlfakirGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLtfgtA 595
Cdd:TIGR04520 79 VGMVFQNpdN-QFVGATVEddvafglENL-------GVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRV----A 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 596 ILG----DSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEAdILADRKVFISRGKLKCAGS--SLFL 667
Cdd:TIGR04520 147 IAGvlamRPDIIILDEATSMLDPKGRKEVLETIRKlnKEEGITVISITHDMEEA-VLADRVIVMNKGKIVAEGTprEIFS 225
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1958662872 668 K----KKWGVG----YHLSLQLKE--VCVPENITS---LVKQ 696
Cdd:TIGR04520 226 QvellKEIGLDvpfiTELAKALKKrgIPLPPDILTeeeLVDE 267
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
445-663 |
1.48e-35 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 136.33 E-value: 1.48e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLEsVFRI 524
Cdd:COG1120 2 LEAENLSVGYGGRP----VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRE-LARR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRL----FAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDS 600
Cdd:COG1120 77 IAYVPQEPPAPFGLTVRELVALgrypHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 601 QIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG1120 157 PLLLLDEPTSHLDLAHQLEVLELLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGP 221
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
445-658 |
3.53e-35 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 134.63 E-value: 3.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESVF 522
Cdd:cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLsgKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQsnvQFDFL---TVRENLRLFAKIRGVPPQEVEKEVQRvLLEL-EMKNIQDILARNLSGGQKRKLTFGTAILG 598
Cdd:cd03258 82 RRIGMIFQ---HFNLLssrTVFENVALPLEIAGVPKAEIEERVLE-LLELvGLEDKADAYPAQLSGGQKQRVGIARALAN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDinRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
445-663 |
4.09e-35 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 134.72 E-value: 4.09e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESVF 522
Cdd:COG1127 6 IEVRNLTKSFGDRV----VLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLseKELYELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQFDFLTVREN----LRLFAKIrgvPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILG 598
Cdd:COG1127 82 RRIGMLFQGGALFDSLTVFENvafpLREHTDL---SEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALAL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR-----VVlfsTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG1127 159 DPEILLYDEPTAGLDPITSAVIDELIRELRDELgltsvVV---THDLDSAFAIADRVAVLADGKIIAEGT 225
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
445-662 |
4.47e-35 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 133.56 E-value: 4.47e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmadlESVFRI 524
Cdd:cd03269 1 LEVENVTKRFGRV----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03269 73 -GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:cd03269 152 LDEPFSGLDPVNVELLKDVIRElARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
444-677 |
5.52e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 142.60 E-value: 5.52e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPSkiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFR 523
Cdd:COG4987 333 SLELEDVSFRYPGAGR--PVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDL-DEDDLRR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDfLTVRENLRLFAKirGVPPQEVEKEVQRV----LLELEMKNIQDIL---ARNLSGGQKRKLTFGTAI 596
Cdd:COG4987 410 RIAVVPQRPHLFD-TTLRENLRLARP--DATDEELWAALERVglgdWLAALPDGLDTWLgegGRRLSGGERRRLALARAL 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADiLADRKVFISRGKLKCAGSSLFLKKKWGVGYH 676
Cdd:COG4987 487 LRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTHEELLAQNGRYRQ 565
|
.
gi 1958662872 677 L 677
Cdd:COG4987 566 L 566
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
445-657 |
6.13e-35 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 136.47 E-value: 6.13e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVfRI 524
Cdd:PRK13537 8 IDFRNVEKRYGDK----LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ-RV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sGVCPQ-SNVQFDFlTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:PRK13537 83 -GVVPQfDNLDPDF-TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEADILADRKVFISRGK 657
Cdd:PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARgKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
445-689 |
7.53e-35 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 135.27 E-value: 7.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEY-KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI--YNNRLSEMADLESV 521
Cdd:TIGR04521 1 IKLKNVSYIYqPGTPFEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIdgRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVcpqsnVqFDF-------LTVRE-------NLrlfakirGVPPQEVEKEVQRVLLELEMKniQDILARN---LSG 584
Cdd:TIGR04521 81 RKKVGL-----V-FQFpehqlfeETVYKdiafgpkNL-------GLSEEEAEERVKEALELVGLD--EEYLERSpfeLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 585 GQKRKLtfgtAILG----DSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:TIGR04521 146 GQMRRV----AIAGvlamEPEVLILDEPTAGLDPKGRKEILDLFKRlhKEKGLTVILVTHSMEDVAEYADRVIVMHKGKI 221
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1958662872 659 KCAGSS--LFLKKKWGVGYHLSL--------QLKEVCVPEN 689
Cdd:TIGR04521 222 VLDGTPreVFSDVDELEKIGLDVpeitelarKLKEKGLPVP 262
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
423-663 |
1.15e-34 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 141.43 E-value: 1.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 423 DPAPLSGGSFEPVSPEFhgkeSIRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTK 502
Cdd:COG4988 319 EPAAPAGTAPLPAAGPP----SIELEDVSFSY---PGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYS 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 503 GSVTIYNNRLSEMaDLESVFRISGVCPQSNVQFDfLTVRENLRLFAkiRGVPPQEVEKEVQRVLLELEMKNIQDIL---- 578
Cdd:COG4988 392 GSILINGVDLSDL-DPASWRRQIAWVPQNPYLFA-GTIRENLRLGR--PDASDEELEAALEAAGLDEFVAALPDGLdtpl 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 579 ---ARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQfmDEADI-LADRKVFIS 654
Cdd:COG4988 468 gegGRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITH--RLALLaQADRILVLD 545
|
....*....
gi 1958662872 655 RGKLKCAGS 663
Cdd:COG4988 546 DGRIVEQGT 554
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1272-1411 |
1.65e-34 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 129.69 E-value: 1.65e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREGDALGFLGYCPQENALWPNLTVKEHLE 1346
Cdd:pfam00005 2 KNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGqdltdDERKSLRKEIGYVFQDPQLFPRLTVRENLR 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1347 VFATVLGLSKSHAAVTITRLADALQLQDQLKSPV----KTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:pfam00005 82 LGLLLKGLSKREKDARAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1262-1466 |
2.09e-34 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 132.28 E-value: 2.09e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----------SREGdalgfLGYC 1329
Cdd:cd03218 6 LSKRyGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGqditklpmhkrARLG-----IGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1330 PQENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEP 1409
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1410 STGLDPEGQQQIwQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:cd03218 161 FAGVDPIAVQDI-QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGT 216
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
445-657 |
2.11e-34 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 132.17 E-value: 2.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgkpsKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMadleSVFRI 524
Cdd:cd03224 1 LEVENLNAGYG----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL----PPHER 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 S----GVCPQSNVQFDFLTVRENLRLFAKIRgvPPQEVEKEVQRVlLEL--EMKNIQDILARNLSGGQKRKLTFGTAILG 598
Cdd:cd03224 73 AragiGYVPEGRRIFPELTVEENLLLGAYAR--RRAKRKARLERV-YELfpRLKERRKQLAGTLSGGEQQMLAIARALMS 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGK 657
Cdd:cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRElRDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
445-658 |
2.36e-34 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 131.61 E-value: 2.36e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRlseMADLESVFRI 524
Cdd:cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD---VTDLPPKDRD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03301 154 MDEPLSNLDAKLRVQMRAELKRlqQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
1262-1467 |
4.04e-34 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 131.37 E-value: 4.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR-EGDALGFLGYCPQENALWPNL 1339
Cdd:TIGR03740 6 LSKRfGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPwTRKDLHKIGSLIESPPLYENL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKShaavTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:TIGR03740 86 TARENLKVHTTLLGLPDS----RIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQ 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1420 QIWQAIRAIiknTDRG--ALLTTHYMAEAEALCDRVAILVSGRLRCIGSI 1467
Cdd:TIGR03740 162 ELRELIRSF---PEQGitVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1272-1481 |
5.99e-34 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 130.92 E-value: 5.99e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREG--DALGFLGYCPQ--ENALwpnltvkeh 1344
Cdd:COG1122 18 DDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGkdiTKKNlrELRRKVGLVFQnpDDQL--------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 leVFATV----------LGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCF--VLSIlgNPSILLLDEPSTG 1412
Cdd:COG1122 89 --FAPTVeedvafgpenLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIagVLAM--EPEVLVLDEPTAG 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1413 LDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLkskFGKDYLLE 1481
Cdd:COG1122 165 LDPRGRRELLELLKR-LNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV---FSDYELLE 229
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1262-1465 |
1.70e-33 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 129.18 E-value: 1.70e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-------REGDalgfLGYCPQEN 1333
Cdd:cd03259 6 LSKTyGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRdvtgvppERRN----IGMVFQDY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1334 ALWPNLTVKEHLeVFA-TVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:cd03259 82 ALFPHLTVAENI-AFGlKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1413 LDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
445-695 |
1.72e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 132.52 E-value: 1.72e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYK------G---------KPSK--IEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI 507
Cdd:COG4586 2 IEVENLSKTYRvyekepGlkgalkglfRREYreVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 508 -----YNNRlsemadLESVFRISGVCPQ-SNVQFDfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARN 581
Cdd:COG4586 82 lgyvpFKRR------KEFARRIGVVFGQrSQLWWD-LPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 582 LSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR--VVLFSTQFMDeaDI--LADRKVFISRGK 657
Cdd:COG4586 155 LSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERgtTILLTSHDMD--DIeaLCDRVIVIDHGR 232
|
250 260 270
....*....|....*....|....*....|....*...
gi 1958662872 658 LKCAGSSLFLKKKWGVGYHLSLQLKEVCVPENITSLVK 695
Cdd:COG4586 233 IIYDGSLEELKERFGPYKTIVLELAEPVPPLELPRGGE 270
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1270-1461 |
3.33e-33 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 129.77 E-value: 3.33e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----------SREGDALGFlgycpQENALWPN 1338
Cdd:COG0411 19 AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGrditglpphriARLGIARTF-----QNPRLFPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKEHLEV----------FATVLGLSKSHAAVTITR-----LADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSI 1403
Cdd:COG0411 94 LTVLENVLVaaharlgrglLAALLRLPRARREEREAReraeeLLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1404 LLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG0411 174 LLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRV 231
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
444-663 |
4.21e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 130.61 E-value: 4.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLsemaDLESVFR 523
Cdd:COG4152 1 MLELKGLTKRFGDKT----AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL----DPEDRRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 I------SGVCPQsnvqfdfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAIL 597
Cdd:COG4152 73 IgylpeeRGLYPK-------MKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKERKA-DRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG4152 146 HDPELLILDEPFSGLDPVNVELLKDVIRELAAkGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGS 212
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1272-1460 |
6.50e-33 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 128.18 E-value: 6.50e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----------SREGdalgfLGYCPQENALWPNLT 1340
Cdd:COG0410 20 HGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGeditglpphriARLG-----IGYVPEGRRIFPSLT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLEVFATVLGLSKSHAAvtitRLADALQ----LQDQLKSPVKTLSEGVKRklcfVLSI----LGNPSILLLDEPSTG 1412
Cdd:COG0410 95 VEENLLLGAYARRDRAEVRA----DLERVYElfprLKERRRQRAGTLSGGEQQ----MLAIgralMSRPKLLLLDEPSLG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1413 LDPEGQQQIWQAIRAIIkntDRGA--LLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:COG0410 167 LAPLIVEEIFEIIRRLN---REGVtiLLVEQNARFALEIADRAYVLERGR 213
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
444-658 |
7.30e-33 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 126.51 E-value: 7.30e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPSKIEA--LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGL--SVPTKGSVTIyNNRlseMADLE 519
Cdd:cd03213 3 TLSFRNLTVTVKSSPSKSGKqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLI-NGR---PLDKR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 SVFRISGVCPQSNVQFDFLTVRENLRLFAKIRGvppqevekevqrvllelemkniqdilarnLSGGQKRKLTFGTAILGD 599
Cdd:cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG-----------------------------LSGGERKRVSIALELVSN 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFST-QFMDEADILADRKVFISRGKL 658
Cdd:cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRlADTGRTIICSIhQPSSEIFELFDKLLLLSQGRV 190
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
437-677 |
1.09e-32 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 137.27 E-value: 1.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 437 PEFHGkeSIRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMa 516
Cdd:COG2274 468 PRLKG--DIELENVSFRYP--GDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQI- 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 DLESVFRISGVCPQSNVQFdFLTVRENLRLFAKirGVPPQEVEKEVQRVLLElemkniQDILA-------------RNLS 583
Cdd:COG2274 543 DPASLRRQIGVVLQDVFLF-SGTIRENITLGDP--DATDEEIIEAARLAGLH------DFIEAlpmgydtvvgeggSNLS 613
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 584 GGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQfmDEADI-LADRKVFISRGKLKCAG 662
Cdd:COG2274 614 GGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAH--RLSTIrLADRIIVLDKGRIVEDG 691
|
250
....*....|....*
gi 1958662872 663 SSLFLKKKWGVGYHL 677
Cdd:COG2274 692 THEELLARKGLYAEL 706
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
446-659 |
1.11e-32 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 126.60 E-value: 1.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGKPskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRIS 525
Cdd:cd03226 1 RIENISFSYKKGT---EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 gvcpQ-SNVQFDFLTVRENLRLFAKIRGVPPQEVEKevqrVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03226 78 ----QdVDYQLFTDSVREELLLGLKELDAGNEQAET----VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLK 659
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIRElAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1264-1460 |
1.24e-32 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 126.43 E-value: 1.24e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREGDALGFLGYCPQEnalwP- 1337
Cdd:cd03225 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGkdltkLSLKELRRKVGLVFQN----Pd 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 ----NLTVKEhlEV-FATV-LGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCfVLSIL-GNPSILLLDEPS 1410
Cdd:cd03225 86 dqffGPTVEE--EVaFGLEnLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA-IAGVLaMDPDILLLDEPT 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1411 TGLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:cd03225 163 AGLDPAGRRELLELLKK-LKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
445-657 |
2.05e-32 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 124.61 E-value: 2.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 S-GVCPQSNVQFDFLTVRENLRLfakirgvppqevekevqrvllelemkniqdilarNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:cd03229 77 RiGMVFQDFALFPHLTVLENIAL----------------------------------GLSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKERKAD--RVVLFSTQFMDEADILADRKVFISRGK 657
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQlgITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
445-626 |
2.47e-32 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 125.94 E-value: 2.47e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVF-- 522
Cdd:COG2884 2 IRFENVSKRYPGGR---EALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYlr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 -RIsGVCPQsnvqfDF-----LTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAI 596
Cdd:COG2884 79 rRI-GVVFQ-----DFrllpdRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARAL 152
|
170 180 190
....*....|....*....|....*....|
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:COG2884 153 VNRPELLLADEPTGNLDPETSWEIMELLEE 182
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
444-658 |
2.76e-32 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 129.83 E-value: 2.76e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRlsEMADLES--- 520
Cdd:COG3842 5 ALELENVSKRYGDVT----ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILL-DGR--DVTGLPPekr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 ----VFrisgvcpQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQK------RKL 590
Cdd:COG3842 78 nvgmVF-------QDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQqrvalaRAL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 591 TFGTAILgdsqifLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFST--QfmDEADILADRKVFISRGKL 658
Cdd:COG3842 151 APEPRVL------LLDEPLSALDAKLREEMREELRRlqRELGITFIYVThdQ--EEALALADRIAVMNDGRI 214
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1270-1461 |
5.45e-32 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 125.63 E-value: 5.45e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-------SREGDALGfLGYCPQENALWPNLTVK 1342
Cdd:cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGeditglpPHEIARLG-IGRTFQIPRLFPELTVL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 EHLEV--------FATVLGLSKSHAAVT--ITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:cd03219 94 ENVMVaaqartgsGLLLARARREEREARerAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1413 LDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03219 174 LNPEETEELAELIRE-LRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
445-663 |
5.99e-32 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 125.59 E-value: 5.99e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADlesvfRI 524
Cdd:COG1121 7 IELENLTVSYGGRP----VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARR-----RI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVcPQ-SNVQFDF-LTVRE--------NLRLFAKIRgvppQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGT 594
Cdd:COG1121 78 GYV-PQrAEVDWDFpITVRDvvlmgrygRRGLFRRPS----RADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 595 AILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLkCAGS 663
Cdd:COG1121 153 ALAQDPDLLLLDEPFAGVDAATEEALYELLRElRREGKTILVVTHDLGAVREYFDRVLLLNRGLV-AHGP 221
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1243-1466 |
1.01e-31 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 124.76 E-value: 1.01e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1243 PVIVASCLRKEYagkwkhclskkKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG------ 1316
Cdd:COG1137 2 MTLEAENLVKSY-----------GKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGedithl 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1317 -----SREGdalgfLGYCPQENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKL 1391
Cdd:COG1137 71 pmhkrARLG-----IGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1392 CFVLSILGNPSILLLDEPSTGLDP----EgqqqiwqaIRAIIKN-TDRGA--LLTTHYMAEAEALCDRVAILVSGRLRCI 1464
Cdd:COG1137 146 EIARALATNPKFILLDEPFAGVDPiavaD--------IQKIIRHlKERGIgvLITDHNVRETLGICDRAYIISEGKVLAE 217
|
..
gi 1958662872 1465 GS 1466
Cdd:COG1137 218 GT 219
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
445-658 |
1.10e-31 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 123.77 E-value: 1.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSkieaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRI 524
Cdd:COG4619 1 LELEGLSFRVGGKPI----LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAM-PPPEWRRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDfLTVRENLRLFAKIRGVPPQEveKEVQRVLLELEMKniQDIL---ARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:COG4619 76 VAYVPQEPALWG-GTVRDNLPFPFQLRERKFDR--ERALELLERLGLP--PDILdkpVERLSGGERQRLALIRALLLQPD 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 602 IFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:COG4619 151 VLLLDEPTSALDPENTRRVEELLREylAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
445-663 |
1.40e-31 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 124.47 E-value: 1.40e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtIYNNRlsemadlesvfRI 524
Cdd:cd03219 1 LEVRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGE-----------DI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCP------------QsNVQ-FDFLTVRENLRLFAKIRGVPP----------QEVEKEVQRVLLELEMKNIQDILARN 581
Cdd:cd03219 65 TGLPPheiarlgigrtfQ-IPRlFPELTVLENVMVAAQARTGSGlllararreeREARERAEELLERVGLADLADRPAGE 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 582 LSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLfstqfMDEADI-----LADRKVFISR 655
Cdd:cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRElRERGITVL-----LVEHDMdvvmsLADRVTVLDQ 218
|
....*...
gi 1958662872 656 GKLKCAGS 663
Cdd:cd03219 219 GRVIAEGT 226
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
446-662 |
1.58e-31 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 122.16 E-value: 1.58e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMadlesvfris 525
Cdd:cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL---------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 gvcpqsnvqfdfltvreNLRLFAKIRGVPPQEvekevqrvlleLEMKNIQDILARN---LSGGQKRKLTFGTAILGDSQI 602
Cdd:cd03214 67 -----------------SPKELARKIAYVPQA-----------LELLGLAHLADRPfneLSGGERQRVLLARALAQEPPI 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:cd03214 119 LLLDEPTSHLDIAHQIELLELLRRlaRERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1242-1470 |
6.59e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 129.25 E-value: 6.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1242 KPVIVASCLRKEYAGKWKHclskkkakiATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTA---GQVLLKG-- 1316
Cdd:COG1123 2 TPLLEVRDLSVRYPGGDVP---------AVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGrd 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1317 ---SREGDALGFLGYCPQE--NALWPnLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKL 1391
Cdd:COG1123 73 lleLSEALRGRRIGMVFQDpmTQLNP-VTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1392 CFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:COG1123 152 AIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI 230
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1262-1460 |
1.80e-30 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 118.50 E-value: 1.80e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGF-----LGYCPQenal 1335
Cdd:cd00267 5 LSFRyGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEelrrrIGYVPQ---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 wpnltvkehlevfatvlglskshaavtitrladalqlqdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:cd00267 81 -----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958662872 1416 EGQQQIWQAIRAIIKNtDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:cd00267 114 ASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1272-1466 |
2.30e-30 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 121.30 E-value: 2.30e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGF------LGYCPQENALWPNLTVKE-- 1343
Cdd:COG1120 18 DDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDG-RDLASLSRrelarrIAYVPQEPPAPFGLTVRElv 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 ------HLEVFAtvlGLSKSHAAVtITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEG 1417
Cdd:COG1120 97 algrypHLGLFG---RPSAEDREA-VEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAH 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1418 QQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:COG1120 173 QLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGP 221
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
445-658 |
2.64e-30 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 121.06 E-value: 2.64e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLEsvFRi 524
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKA--FR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sgvcpqSNVQFDF----------LTVRENLRLFAKIRGVPpqEVEKEVQRVLLELEMKniQDILARN---LSGGQKRKLT 591
Cdd:COG1124 79 ------RRVQMVFqdpyaslhprHTVDRILAEPLRIHGLP--DREERIAELLEQVGLP--PSFLDRYphqLSGGQRQRVA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 592 FGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR--VVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:COG1124 149 IARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERglTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
445-664 |
3.02e-30 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 120.34 E-value: 3.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-----ADLe 519
Cdd:cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLpmhkrARL- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 svfrisGVC--PQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAIL 597
Cdd:cd03218 76 ------GIGylPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALA 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGKLKCAGSS 664
Cdd:cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIgVLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
460-664 |
4.12e-30 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 120.09 E-value: 4.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 460 KIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMadleSVFRIS----GVCPQS-NVq 534
Cdd:COG0410 15 GIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGL----PPHRIArlgiGYVPEGrRI- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 535 FDFLTVRENLRLFAKIRGvPPQEVEKEVQRVlLEL-----EMKNiqdILARNLSGGQKRKLTFGTAILGDSQIFLLDEPT 609
Cdd:COG0410 90 FPSLTVEENLLLGAYARR-DRAEVRADLERV-YELfprlkERRR---QRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPS 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 610 AGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGKLKCAGSS 664
Cdd:COG0410 165 LGLAPLIVEEIFEIIRRLNREGVtILLVEQNARFALEIADRAYVLERGRIVLEGTA 220
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
445-658 |
6.32e-30 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 119.05 E-value: 6.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAD--LESVF 522
Cdd:cd03292 1 IEFINVTKTY---PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGraIPYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKiNKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
445-663 |
8.43e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 120.48 E-value: 8.43e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmadlESVFRI 524
Cdd:PRK13632 8 IKVENVSFSYP--NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK----ENLKEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 S---GVCPQS-NVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDS 600
Cdd:PRK13632 82 RkkiGIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 601 QIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEAdILADRKVFISRGKLKCAGS 663
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDlrKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
445-664 |
8.60e-30 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 125.79 E-value: 8.60e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSK-IEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESV 521
Cdd:COG1123 261 LEVRNLSKRYPVRGKGgVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLsrRSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQS-NVQFD-FLTVRENLRLFAKIRGV-PPQEVEKEVQRVLLELEMKniQDILARN---LSGGQKRKLTFGTA 595
Cdd:COG1123 341 RRRVQMVFQDpYSSLNpRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLP--PDLADRYpheLSGGQRQRVAIARA 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 596 ILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRV--VLFSTQFMDEADILADRKVFISRGKLKCAGSS 664
Cdd:COG1123 419 LALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGltYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
445-658 |
9.37e-30 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 119.33 E-value: 9.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSkieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRI 524
Cdd:cd03295 1 IEFENVTKRYGGGKK---AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ-DPVELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRV--LLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELlaLVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLK--ERKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03295 157 LLMDEPFGALDPITRDQLQEEFKrlQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
444-663 |
1.47e-29 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 118.60 E-value: 1.47e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLEsvfR 523
Cdd:cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFLTVREN----LRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGD 599
Cdd:cd03296 75 NVGFVFQHYALFRHMTVFDNvafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNLLKeRKADRV---VLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLR-RLHDELhvtTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
445-663 |
1.48e-29 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 118.49 E-value: 1.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNrlsEMADLESVFRI 524
Cdd:cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGK---DITNLPPHKRP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:cd03300 154 LDEPLGALDLKLRKDMQLELKRlqKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
445-663 |
1.85e-29 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 125.02 E-value: 1.85e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPT---KGSVTIYNNRLSEMADLESV 521
Cdd:COG1123 5 LEVRDLSVRYPGGD--VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLlelEMKNIQDILARN---LSGGQKRKLTFGTAILG 598
Cdd:COG1123 83 RRIGMVFQDPMTQLNPVTVGDQIAEALENLGLSRAEARARVLELL---EAVGLERRLDRYphqLSGGQRQRVAIAMALAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG1123 160 DPDLLIADEPTTALDVTTQAEILDLLRElqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGP 226
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
446-634 |
1.93e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 118.99 E-value: 1.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMadleSVFRIS 525
Cdd:COG0411 6 EVRGLTKRFGG----LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGL----PPHRIA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 --GVCP--QsNVQ-FDFLTVRENLRL----------FAKIRGVPP-----QEVEKEVQRVLLELEMKNIQDILARNLSGG 585
Cdd:COG0411 78 rlGIARtfQ-NPRlFPELTVLENVLVaaharlgrglLAALLRLPRarreeREARERAEELLERVGLADRADEPAGNLSYG 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 586 QKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR---VVL 634
Cdd:COG0411 157 QQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERgitILL 208
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1268-1469 |
2.20e-29 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 118.27 E-value: 2.20e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGFLGYCPQENALWPN--LTVKE-- 1343
Cdd:COG1121 19 RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRIGYVPQRAEVDWDfpITVRDvv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 ------HLEVFatvLGLSKSHAAVtITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEG 1417
Cdd:COG1121 99 lmgrygRRGLF---RRPSRADREA-VDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAAT 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1418 QQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVaILVSGRLRCIGSIQH 1469
Cdd:COG1121 175 EEALYELLRE-LRREGKTILVVTHDLGAVREYFDRV-LLLNRGLVAHGPPEE 224
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1265-1465 |
3.04e-29 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 117.01 E-value: 3.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1265 KKAKIATRNVSFCVrKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREGDALG----FLGYCPQENAL 1335
Cdd:cd03297 8 KRLPDFTLKIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdSRKKINLPpqqrKIGLVFQQYAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 WPNLTVKEHLEvFATVlGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:cd03297 87 FPHLNVRENLA-FGLK-RKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1416 EGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03297 165 ALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1263-1467 |
3.15e-29 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 117.88 E-value: 3.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1263 SKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSRegDAL-----GFLgycpqenalwP 1337
Cdd:COG1134 34 TRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGRV--SALlelgaGFH----------P 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NLTVKEHLEVFATVLGLSKSHaavtITRLADAL----QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEP-STG 1412
Cdd:COG1134 102 ELTGRENIYLNGRLLGLSRKE----IDEKFDEIvefaELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVlAVG 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1413 lDPEGQQQIWQAIRAIIKNTdRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSI 1467
Cdd:COG1134 178 -DAAFQKKCLARIRELRESG-RTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP 230
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1264-1465 |
3.26e-29 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 117.25 E-value: 3.26e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDALGFLgycpqenalwPNLT 1340
Cdd:cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGrvsSLLGLGGGFN----------PELT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEP-STGlDPEGQQ 1419
Cdd:cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVlAVG-DAAFQE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 1420 QIWQAIRAIIKNTdRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03220 180 KCQRRLRELLKQG-KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
437-658 |
6.52e-29 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 116.09 E-value: 6.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 437 PEFHGKESIRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRLSEMA 516
Cdd:cd03220 11 PTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV-RGRVSSLL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 DLESVFRisgvcPQsnvqfdfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAI 596
Cdd:cd03220 90 GLGGGFN-----PE-------LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIAT 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQgKTVILVSHDPSSIKRLCDRALVLEKGKI 220
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
466-662 |
7.30e-29 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 115.67 E-value: 7.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 466 DLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNnrlSEMADLESVFRISGVCPQSNVQFDFLTVRENLR 545
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING---VDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 546 LFA----KIRGVPPQEVEKEVQRVLLELEMKNiqdiLARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVW 621
Cdd:cd03298 93 LGLspglKLTAEDRQAIEVALARVGLAGLEKR----LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 622 NLLKERKADR--VVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:cd03298 169 DLVLDLHAETkmTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1268-1456 |
8.32e-29 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 115.71 E-value: 8.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGFLGYCPQ-ENALW--PnLTVKE- 1343
Cdd:cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQrRSIDRdfP-ISVRDv 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 -------HLEVFatvLGLSKSHAAVtITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:cd03235 91 vlmglygHKGLF---RRLSKADKAK-VDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958662872 1417 GQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAIL 1456
Cdd:cd03235 167 TQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
445-658 |
1.02e-28 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 116.31 E-value: 1.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESVF 522
Cdd:COG3638 3 LELRNLSKRYPGGT---PALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALrgRALRRLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQsnvQFDF---LTVREN--------LRLFAKIRGVPPQEvekEVQRVLLELEMKNIQDIL---ARNLSGGQK- 587
Cdd:COG3638 80 RRIGMIFQ---QFNLvprLSVLTNvlagrlgrTSTWRSLLGLFPPE---DRERALEALERVGLADKAyqrADQLSGGQQq 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 588 -----RkltfgtAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:COG3638 154 rvaiaR------ALVQEPKLILADEPVASLDPKTARQVMDLLRRiaREDGITVVVNLHQVDLARRYADRIIGLRDGRV 225
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
445-654 |
1.11e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 116.89 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS-EMADLESVFr 523
Cdd:COG4525 4 LTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTgPGADRGVVF- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 isgvcpQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:COG4525 83 ------QKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFIS 654
Cdd:COG4525 157 LMDEPFGALDALTREQMQELLLDvwQRTGKGVFLITHSVEEALFLATRLVVMS 209
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
446-637 |
1.57e-28 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 114.94 E-value: 1.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSemadlESVFRIS 525
Cdd:cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 GVcPQS-NVQFDF-LTVRE--NLRLFAKIRGVPP--QEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGD 599
Cdd:cd03235 72 YV-PQRrSIDRDFpISVRDvvLMGLYGHKGLFRRlsKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFST 637
Cdd:cd03235 151 PDLLLLDEPFAGVDPKTQEDIYELLRElRREGMTILVVT 189
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1262-1466 |
1.98e-28 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 118.66 E-value: 1.98e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregDALG------FLGYCPQENA 1334
Cdd:COG3842 11 VSKRyGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGR---DVTGlppekrNVGMVFQDYA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1335 LWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEG-----------VKRklcfvlsilgnPSI 1403
Cdd:COG3842 88 LFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGqqqrvalaralAPE-----------PRV 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1404 LLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:COG3842 157 LLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGT 219
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
445-659 |
5.04e-28 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 113.65 E-value: 5.04e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtIYNNRLSEMADLESVfri 524
Cdd:TIGR03740 1 LETKNLSKRFGKQ----TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHKI--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sGVCPQSNVQFDFLTVRENLRLFAKIRGVPpqevEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:TIGR03740 73 -GSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGKLK 659
Cdd:TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGItVILSSHILSEVQQLADHIGIISEGVLG 203
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
443-663 |
7.86e-28 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 114.10 E-value: 7.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 443 ESIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVf 522
Cdd:PRK13548 1 AMLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQ-SNVQFDFlTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQK------RKLTFGTA 595
Cdd:PRK13548 76 RRRAVLPQhSSLSFPF-TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQqrvqlaRVLAQLWE 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 596 ILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR-----VVL----FSTQFmdeadilADRKVFISRGKLKCAGS 663
Cdd:PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERglaviVVLhdlnLAARY-------ADRIVLLHQGRLVADGT 224
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
356-637 |
7.87e-28 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 120.16 E-value: 7.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 356 PAGSSNLIAATnfMLAFDALLYLALtmyFEKV--LPNEYGHqrsplfflkpsfWVQPRKPAHVILEDGIDPAPLSGGSFE 433
Cdd:TIGR02868 261 PAVADGRLAPV--TLAVLVLLPLAA---FEAFaaLPAAAQQ------------LTRVRAAAERIVEVLDAAGPVAEGSAP 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 434 PVSPEFHGKESIRIRNISKEYKGKPskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS 513
Cdd:TIGR02868 324 AAGAVGLGKPTLELRDLSAGYPGAP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVS 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 514 EmADLESVFRISGVCPQSNVQFDfLTVRENLRLFAKirGVPPQEVEKEVQRVLLELEMKNIQDIL-------ARNLSGGQ 586
Cdd:TIGR02868 401 S-LDQDEVRRRVSVCAQDAHLFD-TTVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLdtvlgegGARLSGGE 476
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 587 KRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFST 637
Cdd:TIGR02868 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLIT 527
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1268-1460 |
7.90e-28 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 111.51 E-value: 7.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGFL-------GYCPQENALWPNLT 1340
Cdd:cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELpplrrriGMVFQDFALFPHLT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLevfatVLGLSKshaavtitrladalqlqdqlkspvktlseGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:cd03229 93 VLENI-----ALGLSG-----------------------------GQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958662872 1421 IWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:cd03229 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
445-658 |
1.28e-27 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 112.60 E-value: 1.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAD-LESVFR 523
Cdd:cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRrLRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 isgvcpqSNVQFDF----------LTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILAR---NLSGGQKRKL 590
Cdd:cd03257 82 -------KEIQMVFqdpmsslnprMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRyphELSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR--VVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELglTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
1262-1479 |
1.33e-27 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 112.81 E-value: 1.33e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregDALGF------LGYCPQENAL 1335
Cdd:cd03299 6 LSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK---DITNLppekrdISYVPQNYAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 WPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:cd03299 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1416 EGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQ----HLKSKFGKDYL 1479
Cdd:cd03299 163 RTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEevfkKPKNEFVAEFL 230
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1258-1460 |
1.33e-27 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 112.18 E-value: 1.33e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1258 WKHCLSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGFLGYCPQENALWP 1337
Cdd:cd03293 7 SKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEG 1417
Cdd:cd03293 87 WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 1418 QQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILvSGR 1460
Cdd:cd03293 167 REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL-SAR 208
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
445-658 |
1.35e-27 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 110.21 E-value: 1.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRlsemadlesvfri 524
Cdd:cd03216 1 LELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV-DGK------------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sgvcpqsnvQFDFLTVRENLRlfAKIRGVpPQevekevqrvllelemkniqdilarnLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03216 63 ---------EVSFASPRDARR--AGIAMV-YQ-------------------------LSVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQGVaVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1245-1461 |
1.40e-27 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 112.20 E-value: 1.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1245 IVASCLRKEYAGKwkhclskKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGD 1321
Cdd:cd03255 1 IELKNLSKTYGGG-------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGtdiSKLSE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1322 A-LGFL-----GYCPQENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVL 1395
Cdd:cd03255 74 KeLAAFrrrhiGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIAR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1396 SILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMaEAEALCDRVAILVSGRL 1461
Cdd:cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
462-663 |
1.59e-27 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 112.62 E-value: 1.59e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 462 EALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRISGVCPQSNVQFDFLTVR 541
Cdd:TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 542 ENLRLFAKIRGVPPQEVEKEVqrvlLEL-----EMKNIQdilARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPfS 616
Cdd:TIGR03410 94 ENLLTGLAALPRRSRKIPDEI----YELfpvlkEMLGRR---GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP-S 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 617 ----RHRVWNLLKERKaDRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:TIGR03410 166 iikdIGRVIRRLRAEG-GMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
445-626 |
5.22e-27 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 114.02 E-value: 5.22e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYN---NRLSEmADLESV 521
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGvdlTALSE-RELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQsnvQFDFL---TVRENLRLFAKIRGVPPQEVEKEVQRvLLEL-EMKNIQDILARNLSGGQK------Rklt 591
Cdd:COG1135 81 RRKIGMIFQ---HFNLLssrTVAENVALPLEIAGVPKAEIRKRVAE-LLELvGLSDKADAYPSQLSGGQKqrvgiaR--- 153
|
170 180 190
....*....|....*....|....*....|....*
gi 1958662872 592 fgtAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:COG1135 154 ---ALANNPKVLLCDEATSALDPETTRSILDLLKD 185
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
443-663 |
7.10e-27 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 110.94 E-value: 7.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 443 ESIRIRNISKEY------------------KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGS 504
Cdd:COG1134 3 SMIEVENVSKSYrlyhepsrslkelllrrrRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 505 VTIyNNRLSEMADLESVFRisgvcPQsnvqfdfLTVRENLRLFAKIRGVPPQEVEkevqrvllelemKNIQDILA----- 579
Cdd:COG1134 83 VEV-NGRVSALLELGAGFH-----PE-------LTGRENIYLNGRLLGLSRKEID------------EKFDEIVEfaelg 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 580 -------RNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEADILADRKV 651
Cdd:COG1134 138 dfidqpvKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESgRTVIFVSHSMGAVRRLCDRAI 217
|
250
....*....|..
gi 1958662872 652 FISRGKLKCAGS 663
Cdd:COG1134 218 WLEKGRLVMDGD 229
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1270-1461 |
1.05e-26 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 109.90 E-value: 1.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG------SREGDAL--GFLGYCPQE--NALWPNL 1339
Cdd:cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGkdllklSRRLRKIrrKEIQMVFQDpmSSLNPRM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHL-EVFATVLGLSKSHAAVTItrladALQLQDQLKSPVK-------TLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:cd03257 100 TIGEQIaEPLRIHGKLSKKEARKEA-----VLLLLVGVGLPEEvlnryphELSGGQRQRVAIARALALNPKLLIADEPTS 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1412 GLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03257 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
444-658 |
1.55e-26 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 109.22 E-value: 1.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFR 523
Cdd:cd03245 2 RIEFRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL-DPADLRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFdFLTVRENLRLFAkirgvppQEVEKEvqRVLLELEMKNIQDILA--------------RNLSGGQKRK 589
Cdd:cd03245 79 NIGYVPQDVTLF-YGTLRDNITLGA-------PLADDE--RILRAAELAGVTDFVNkhpngldlqigergRGLSGGQRQA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 590 LTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADiLADRKVFISRGKL 658
Cdd:cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
442-634 |
1.59e-26 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 116.80 E-value: 1.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 442 KESIRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESV 521
Cdd:COG1132 337 RGEIEFENVSFSY---PGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDL-TLESL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQFDfLTVRENLRLFAkirgvpPQEVEKEVQRVlleLEMKNIQDILAR--------------NLSGGQK 587
Cdd:COG1132 413 RRQIGVVPQDTFLFS-GTIRENIRYGR------PDATDEEVEEA---AKAAQAHEFIEAlpdgydtvvgergvNLSGGQR 482
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL 634
Cdd:COG1132 483 QRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTI 529
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1272-1465 |
2.12e-26 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 107.52 E-value: 2.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsregdalgflgycpQENALWPNLTVKEHLEVFATV 1351
Cdd:cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG--------------KDLASLSPKELARKIAYVPQA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1352 LglskshAAVTITRLADalqlqdqlkSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKN 1431
Cdd:cd03214 82 L------ELLGLAHLAD---------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
|
170 180 190
....*....|....*....|....*....|....
gi 1958662872 1432 TDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03214 147 RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
444-679 |
2.29e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 110.64 E-value: 2.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEY-KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynNRLSEMADLES-- 520
Cdd:PRK13646 2 TIRFDNVSYTYqKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV--DDITITHKTKDky 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 ----------VFRIsgvcPQSNVQFDflTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEM-KNIQDILARNLSGGQKRK 589
Cdd:PRK13646 80 irpvrkrigmVFQF----PESQLFED--TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFsRDVMSQSPFQMSGGQMRK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 590 LTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD--RVVLFSTQFMDEADILADRKVFISRGKL--KCAGSSL 665
Cdd:PRK13646 154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDenKTIILVSHDMNEVARYADEVIVMKEGSIvsQTSPKEL 233
|
250
....*....|....
gi 1958662872 666 FLKKKWGVGYHLSL 679
Cdd:PRK13646 234 FKDKKKLADWHIGL 247
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
449-658 |
2.74e-26 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 108.90 E-value: 2.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 449 NISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGL--SVPTKGSVTIYNNRlsEMADLESVFRISG 526
Cdd:cd03234 8 DVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRveGGGTTSGQILFNGQ--PRKPDQFQKCVAY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 527 VcPQSNVQFDFLTVRENLRLFAKIR-------GVPPQEVEkevQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGD 599
Cdd:cd03234 86 V-RQDDILLPGLTVRETLTYTAILRlprkssdAIRKKRVE---DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQfMDEADI--LADRKVFISRGKL 658
Cdd:cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQlARRNRIVILTIH-QPRSDLfrLFDRILLLSSGEI 222
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1229-1470 |
2.93e-26 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 115.00 E-value: 2.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1229 RTASALASTSFDEKPVIVASCLRKEYAGKwkhclsKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKST 1308
Cdd:COG1123 245 AARGRAAPAAAAAEPLLEVRNLSKRYPVR------GKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPT 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1309 AGQVLLKG--------SREGDALGFLGYCPQ--ENALWPNLTVKEHLEVFATVLG-LSKSHAAVTITRLADALQLQDQL- 1376
Cdd:COG1123 319 SGSILFDGkdltklsrRSLRELRRRVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGlLSRAERRERVAELLERVGLPPDLa 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1377 -KSPvKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAI 1455
Cdd:COG1123 399 dRYP-HELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAV 477
|
250
....*....|....*
gi 1958662872 1456 LVSGRLRCIGSIQHL 1470
Cdd:COG1123 478 MYDGRIVEDGPTEEV 492
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
445-657 |
3.27e-26 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 109.19 E-value: 3.27e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESVF 522
Cdd:cd03256 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLkgKALRQLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQFDFLTVRENL---RLFAK--IRGVPPQEVEKEVQRVLLELEMKNIQD---ILARNLSGGQKRKLTFGT 594
Cdd:cd03256 78 RQIGMIFQQFNLIERLSVLENVlsgRLGRRstWRSLFGLFPKEEKQRALAALERVGLLDkayQRADQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 595 AILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGK 657
Cdd:cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRinREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
445-627 |
3.50e-26 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 108.96 E-value: 3.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-----ADL- 518
Cdd:COG1137 4 LEAENLVKSYGKRT----VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLpmhkrARLg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 ------E-SVFRisgvcpqsnvqfdFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLT 591
Cdd:COG1137 80 igylpqEaSIFR-------------KLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVE 146
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958662872 592 FGTAILGDSQIFLLDEPTAGLDPFSRHRVWNL---LKER 627
Cdd:COG1137 147 IARALATNPKFILLDEPFAGVDPIAVADIQKIirhLKER 185
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
445-658 |
5.38e-26 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 107.62 E-value: 5.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI----YNNRLSEMADLES 520
Cdd:cd03262 1 IEIKNLHKSFGDF----HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIdglkLTDDKKNINELRQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 vfRISGVCPQSNVqFDFLTVRENLRL-FAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGD 599
Cdd:cd03262 77 --KVGMVFQQFNL-FPHLTVLENITLaPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEgMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
445-658 |
1.39e-25 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 108.11 E-value: 1.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKP-----------SKIE---------ALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGS 504
Cdd:cd03294 1 IKIKGLYKIFGKNPqkafkllakgkSKEEilkktgqtvGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 505 VTIYNNRLSEM--ADLESVFR--ISGVCpQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILAR 580
Cdd:cd03294 81 VLIDGQDIAAMsrKELRELRRkkISMVF-QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 581 NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:cd03294 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRlqAELQKTIVFITHDLDEALRLGDRIAIMKDGRL 239
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
445-658 |
1.69e-25 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 107.00 E-value: 1.69e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESVF 522
Cdd:TIGR02315 2 LEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLrgKKLRKLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQFDFLTVRENL---RLFAK--IRGVPPQEVEKEVQRVLLELEMKNIQD---ILARNLSGGQKRKLTFGT 594
Cdd:TIGR02315 79 RRIGMIFQHYNLIERLTVLENVlhgRLGYKptWRSLLGRFSEEDKERALSALERVGLADkayQRADQLSGGQQQRVAIAR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 595 AILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRinKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
445-658 |
1.85e-25 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 109.51 E-value: 1.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM--ADLESVF 522
Cdd:PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALseKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQsnvQFDFL---TVRENLRLFAKIRGVPPQEVEKevqRVLLELEMKNIQDILAR---NLSGGQKRKLTFGTAI 596
Cdd:PRK11153 82 RQIGMIFQ---HFNLLssrTVFDNVALPLELAGTPKAEIKA---RVTELLELVGLSDKADRypaQLSGGQKQRVAIARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDinRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1269-1461 |
1.99e-25 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 112.43 E-value: 1.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1269 IATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-------SREGDALGfLGYCPQENALWPNLTV 1341
Cdd:COG3845 19 VANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpvrirsPRDAIALG-IGMVHQHFMLVPNLTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KEHLevfatVLG--------LSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGL 1413
Cdd:COG3845 98 AENI-----VLGleptkggrLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYRGARILILDEPTAVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1414 DPEGQQQIWQAIRAIiknTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG3845 173 TPQEADELFEILRRL---AAEGKsiIFITHKLREVMAIADRVTVLRRGKV 219
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
445-692 |
2.20e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 107.96 E-value: 2.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVP---TKGSVTIYNNRLSEMADLESV 521
Cdd:PRK13640 6 VEFKHVSFTYPD--SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnPNSKITVDGITLTAKTVWDIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 602 IFLLDEPTAGLDPFSRHRVWNLLKERKADR-VVLFS-TQFMDEADiLADRKVFISRGKLKCAGS--SLFLK----KKWGV 673
Cdd:PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNnLTVISiTHDIDEAN-MADQVLVLDDGKLLAQGSpvEIFSKvemlKEIGL 242
|
250 260
....*....|....*....|....*
gi 1958662872 674 G----YHLSLQLKE--VCVPENITS 692
Cdd:PRK13640 243 DipfvYKLKNKLKEkgISVPQEINT 267
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
447-634 |
2.24e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 106.74 E-value: 2.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMadleSVFRIS- 525
Cdd:COG4674 13 VEDLTVSFDG----FKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGL----DEHEIAr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 -GVC-----PqsNVqFDFLTVRENLRL--------FAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLT 591
Cdd:COG4674 85 lGIGrkfqkP--TV-FEELTVFENLELalkgdrgvFASLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLE 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 592 FGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL 634
Cdd:COG4674 162 IGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVV 204
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
444-663 |
2.86e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 107.52 E-value: 2.86e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYK-GKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRL---SEMADLE 519
Cdd:PRK13649 2 GINLQNVSYTYQaGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLItstSKNKDIK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 SVFRISGVC---PQSNVqFDfLTVRENLRLFAKIRGVPPQEVEKevqRVLLELEMKNI-QDILARN---LSGGQKRKLTF 592
Cdd:PRK13649 82 QIRKKVGLVfqfPESQL-FE-ETVLKDVAFGPQNFGVSQEEAEA---LAREKLALVGIsESLFEKNpfeLSGGQMRRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 593 GTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKlHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
444-663 |
2.99e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 107.44 E-value: 2.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEY-KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYN-NRLSEMADLESV 521
Cdd:PRK13637 2 SIKIENLTHIYmEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvDITDKKVKLSDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQ-SNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRV--LLELEMKNIQDILARNLSGGQKRKLTFGTAILG 598
Cdd:PRK13637 82 RKKVGLVFQyPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAmnIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKElhKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
445-662 |
3.62e-25 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 103.93 E-value: 3.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAD-LESVFr 523
Cdd:cd03247 1 LSINNVSFSYPEQEQQV--LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKaLSSLI- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 isGVCPQSNVQFDfLTVRENlrlfakirgvppqevekevqrvllelemkniqdiLARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:cd03247 78 --SVLNQRPYLFD-TTLRNN----------------------------------LGRRFSGGERQRLALARILLQDAPIV 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADiLADRKVFISRGKLKCAG 662
Cdd:cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
445-703 |
4.71e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 107.03 E-value: 4.71e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGK-PSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS---EMADLES 520
Cdd:PRK13634 3 ITFQKVEHRYQYKtPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkKNKKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 VFRISGVC---PQSnvQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKniQDILARN---LSGGQKRKLtfgt 594
Cdd:PRK13634 83 LRKKVGIVfqfPEH--QLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP--EELLARSpfeLSGGQMRRV---- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 595 AILG----DSQIFLLDEPTAGLDPFSRHRVWNL---LKERKADRVVLFsTQFMDEADILADRKVFISRGKLKCAGS--SL 665
Cdd:PRK13634 155 AIAGvlamEPEVLVLDEPTAGLDPKGRKEMMEMfykLHKEKGLTTVLV-THSMEDAARYADQIVVMHKGTVFLQGTprEI 233
|
250 260 270
....*....|....*....|....*....|....*...
gi 1958662872 666 FLKKKWGVGYHLSLqlkevcvPEniTSLVKQHIpEAKL 703
Cdd:PRK13634 234 FADPDELEAIGLDL-------PE--TVKFKRAL-EEKF 261
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
441-663 |
5.01e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 106.71 E-value: 5.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 441 GKESIRIRNISKEYK--GKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADL 518
Cdd:PRK13633 1 MNEMIKCKNVSYKYEsnEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 ESVFRISGVCPQS-NVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAIL 597
Cdd:PRK13633 81 WDIRNKAGMVFQNpDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEAdILADRKVFISRGKLKCAGS 663
Cdd:PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKElnKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGT 227
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
458-643 |
7.99e-25 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 103.27 E-value: 7.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 458 PSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRL--SEMADLESVFRISGVCPQSNVQF 535
Cdd:TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLdySRKGLLERRQRVGLVFQDPDDQL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 536 DFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPF 615
Cdd:TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161
|
170 180
....*....|....*....|....*....
gi 1958662872 616 SRHRVWNLLKE-RKADRVVLFSTQFMDEA 643
Cdd:TIGR01166 162 GREQMLAILRRlRAEGMTVVISTHDVDLA 190
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
445-663 |
1.01e-24 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 108.11 E-value: 1.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS----EMADLES 520
Cdd:PRK09452 15 VELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIThvpaENRHVNT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 VFrisgvcpQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKevqRVLLELEMKNIQDILARN---LSGGQKRKLTFGTAIL 597
Cdd:PRK09452 91 VF-------QSYALFPHMTVFENVAFGLRMQKTPAAEITP---RVMEALRMVQLEEFAQRKphqLSGGQQQRVAIARAVV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLK--ERKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKalQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1268-1465 |
1.49e-24 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 103.49 E-value: 1.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD--------ALGFLGYcpqenALWPNL 1339
Cdd:cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDlppkdrdiAMVFQNY-----ALYPHM 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:cd03301 88 TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 1420 QIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03301 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
445-669 |
1.74e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 103.46 E-value: 1.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEY-KGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFR 523
Cdd:cd03254 3 IEFENVNFSYdEKKP----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI-SRKSLRS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFlTVRENLRLFakiRGVPPQEVEKEVQRV--LLELEMKNIQDIL------ARNLSGGQKRKLTFGTA 595
Cdd:cd03254 78 MIGVVLQDTFLFSG-TIMENIRLG---RPNATDEEVIEAAKEagAHDFIMKLPNGYDtvlgenGGNLSQGERQLLAIARA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 596 ILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL-----FSTqfmdeadIL-ADRKVFISRGKLKCAGS--SLFL 667
Cdd:cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIiiahrLST-------IKnADKILVLDDGKIIEEGThdELLA 226
|
..
gi 1958662872 668 KK 669
Cdd:cd03254 227 KK 228
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
445-662 |
2.28e-24 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 103.57 E-value: 2.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynnRLSEMADLESVFRI 524
Cdd:cd03299 1 LKVENLSKDWKEF-----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILL---NGKDITNLPPEKRD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLlelEMKNIQDILARN---LSGGQKRKLTFGTAILGDSQ 601
Cdd:cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIA---EMLGIDHLLNRKpetLSGGEQQRVAIARALVVNPK 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 602 IFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:cd03299 150 ILLLDEPFSALDVRTKEKLREELKKirKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1250-1470 |
2.30e-24 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 103.43 E-value: 2.30e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1250 LRKEYAGKwkhclskKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGF---- 1325
Cdd:cd03258 7 VSKVFGDT-------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKelrk 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1326 ----LGYCPQENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNP 1401
Cdd:cd03258 80 arrrIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1402 SILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
464-662 |
3.00e-24 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 102.37 E-value: 3.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDI---YEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRL----SEMADLESVFRISGVCPQSNVQFD 536
Cdd:cd03297 10 LPDFTLKIdfdLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NGTVlfdsRKKINLPPQQRKIGLVFQQYALFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 537 FLTVRENLR--LFAKIRGVPPQEVEKEVQRVllelemkNIQDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAG 611
Cdd:cd03297 89 HLNVRENLAfgLKRKRNREDRISVDELLDLL-------GLDHLLNRypaQLSGGEKQRVALARALAAQPELLLLDEPFSA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 612 LDPFSRHRVWNLLKERKAD--RVVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:cd03297 162 LDRALRLQLLPELKQIKKNlnIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
437-658 |
3.40e-24 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 109.96 E-value: 3.40e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 437 PEFHGKesIRIRNISKEYKGkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI--YNNRLSE 514
Cdd:TIGR03375 458 PRLQGE--IEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLdgVDIRQID 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 515 MADLEsvfRISGVCPQSNVQFdFLTVRENLRLFAkirgvpPQEVEKEVQRVLlelEMKNIQDILA--------------R 580
Cdd:TIGR03375 534 PADLR---RNIGYVPQDPRLF-YGTLRDNIALGA------PYADDEEILRAA---ELAGVTEFVRrhpdgldmqigergR 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 581 NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFST---QFMDeadiLADRKVFISRGK 657
Cdd:TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVThrtSLLD----LVDRIIVMDNGR 676
|
.
gi 1958662872 658 L 658
Cdd:TIGR03375 677 I 677
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
442-662 |
3.70e-24 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 104.33 E-value: 3.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 442 KESIRIRNISKEYKGkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmadlESV 521
Cdd:PRK13635 3 EEIIRVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE----ETV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 F----RISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVekeVQRVLLELEMKNIQDILAR---NLSGGQKRKLTFGT 594
Cdd:PRK13635 77 WdvrrQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM---VERVDQALRQVGMEDFLNRephRLSGGQKQRVAIAG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 595 AILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR--VVLFSTQFMDEAdILADRKVFISRGKLKCAG 662
Cdd:PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKgiTVLSITHDLDEA-AQADRVIVMNKGEILEEG 222
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1272-1460 |
3.74e-24 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 103.24 E-value: 3.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLlkgsregDALGF-------------LGYCPQENALW-- 1336
Cdd:COG1119 20 DDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDV-------RLFGErrggedvwelrkrIGLVSPALQLRfp 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVkehLEVFAT----VLGLSKSHAAVTITR---LADALQLQDQLKSPVKTLSEGVKRKlcfVL---SILGNPSILLL 1406
Cdd:COG1119 93 RDETV---LDVVLSgffdSIGLYREPTDEQRERareLLELLGLAHLADRPFGTLSQGEQRR---VLiarALVKDPELLIL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1407 DEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:COG1119 167 DEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
445-614 |
3.86e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 103.63 E-value: 3.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKE-YKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFR 523
Cdd:COG1101 2 LELKNLSKTfNPGTVNEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 IS--------GVCPQsnvqfdfLTVRENLRLFAK-------IRGVPPQEVEKEVQRV-LLELEMKNIQDILARNLSGGQK 587
Cdd:COG1101 82 IGrvfqdpmmGTAPS-------MTIEENLALAYRrgkrrglRRGLTKKRRELFRELLaTLGLGLENRLDTKVGLLSGGQR 154
|
170 180
....*....|....*....|....*..
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLDP 614
Cdd:COG1101 155 QALSLLMATLTKPKLLLLDEHTAALDP 181
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
444-656 |
5.14e-24 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 105.70 E-value: 5.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA----DLE 519
Cdd:PRK11650 3 GLKLQAVRKSYDGK---TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEpadrDIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 SVFrisgvcpQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRV--LLELEmkniqDILARN---LSGGQKRKLTFGT 594
Cdd:PRK11650 80 MVF-------QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAarILELE-----PLLDRKpreLSGGQRQRVAMGR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 595 AILGDSQIFLLDEPTAGLDpfSRHRVWNLLKERKADRVV----LFSTQFMDEADILADRKVFISRG 656
Cdd:PRK11650 148 AIVREPAVFLFDEPLSNLD--AKLRVQMRLEIQRLHRRLkttsLYVTHDQVEAMTLADRVVVMNGG 211
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
445-658 |
5.75e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 103.62 E-value: 5.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS-EMADLESVFR 523
Cdd:PRK13639 2 LETRDLKYSY---PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKyDKKSLLEVRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQ-SNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:PRK13639 79 TVGIVFQnPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDlNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
1268-1483 |
6.02e-24 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 103.28 E-value: 6.02e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDalgflgycpqENALWpnlTVKEHLE- 1346
Cdd:TIGR04520 15 KPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLD----------EENLW---EIRKKVGm 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 VF---------ATV----------LGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCfVLSILG-NPSILLL 1406
Cdd:TIGR04520 82 VFqnpdnqfvgATVeddvafglenLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVA-IAGVLAmRPDIIIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1407 DEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAeALCDRVAILVSGRLRCIGSIQHLKSKfgKDYLLEMK 1483
Cdd:TIGR04520 161 DEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEA-VLADRVIVMNKGKIVAEGTPREIFSQ--VELLKEIG 234
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
1267-1500 |
6.19e-24 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 103.30 E-value: 6.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALgflgycpqeNALW------ 1336
Cdd:TIGR04521 17 EKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGrditAKKKKKL---------KDLRkkvglv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 ---PnltvkEHlEVFA-TV----------LGLSKSHAAVTITRLADALQLQDQL--KSPVKtLSEGVKRKLCF--VLSIl 1398
Cdd:TIGR04521 88 fqfP-----EH-QLFEeTVykdiafgpknLGLSEEEAEERVKEALELVGLDEEYleRSPFE-LSGGQMRRVAIagVLAM- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1399 gNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLkskFgkdy 1478
Cdd:TIGR04521 160 -EPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREV---F---- 231
|
250 260
....*....|....*....|..
gi 1958662872 1479 lleMKVKTLEQVELLNTEVLRL 1500
Cdd:TIGR04521 232 ---SDVDELEKIGLDVPEITEL 250
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
445-677 |
6.72e-24 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 101.92 E-value: 6.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRI 524
Cdd:cd03251 1 VEFKNVTFRYPGDGPPV--LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY-TLASLRRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFlTVRENLRlFAKiRGVPPQEVEK-----EVQRVLLELEMKNIQDILAR--NLSGGQKRKLTFGTAIL 597
Cdd:cd03251 78 IGLVSQDVFLFND-TVAENIA-YGR-PGATREEVEEaaraaNAHEFIMELPEGYDTVIGERgvKLSGGQRQRIAIARALL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL-----FSTqFMDeadilADRKVFISRGKLKCAGSSLFLKKKWG 672
Cdd:cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFviahrLST-IEN-----ADRIVVLEDGKIVERGTHEELLAQGG 228
|
....*
gi 1958662872 673 VGYHL 677
Cdd:cd03251 229 VYAKL 233
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
417-651 |
8.53e-24 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 107.76 E-value: 8.53e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 417 ILEDGIDPAPLSGGSFEPVSPefhgkeSIRIRNISKEYKGKPskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSG 496
Cdd:TIGR02857 300 VLDAAPRPLAGKAPVTAAPAS------SLEFSGVSVAYPGRR---PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 497 LSVPTKGSVTIYNNRLSEmADLESVFRISGVCPQSNVQFDfLTVRENLRLFAkiRGVPPQEVEKEVQRVLLELEMKNIQD 576
Cdd:TIGR02857 371 FVDPTEGSIAVNGVPLAD-ADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR--PDASDAEIREALERAGLDEFVAALPQ 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 577 ILA-------RNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQfmDEADI-LAD 648
Cdd:TIGR02857 447 GLDtpigeggAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH--RLALAaLAD 524
|
...
gi 1958662872 649 RKV 651
Cdd:TIGR02857 525 RIV 527
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
445-659 |
8.84e-24 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 101.09 E-value: 8.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKiealkdLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLEsvfRI 524
Cdd:TIGR01277 1 LALDKVRYEYEHLPME------FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQ---RP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRL----FAKIRGVPPQEVEKEVQRVllelemkNIQDILAR---NLSGGQKRKLTFGTAIL 597
Cdd:TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLglhpGLKLNAEQQEKVVDAAQQV-------GIADYLDRlpeQLSGGQRQRVALARCLV 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLK 659
Cdd:TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQlcSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
445-656 |
9.08e-24 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 102.47 E-value: 9.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS-EMADLESVFR 523
Cdd:PRK11248 2 LQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEgPGAERGVVFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQfdfltvrENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:PRK11248 78 NEGLLPWRNVQ-------DNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRG 656
Cdd:PRK11248 151 LLDEPFGALDAFTREQMQTLLLKlwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
418-657 |
1.26e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 104.92 E-value: 1.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 418 LEDGID-PAPLSGGSFEPVspefhgkesIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSG 496
Cdd:PRK11607 1 MNDAIPrPQAKTRKALTPL---------LEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 497 LSVPTKGSVTIYNNRLSEMADLEsvfRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQD 576
Cdd:PRK11607 68 FEQPTAGQIMLDGVDLSHVPPYQ---RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 577 ILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHR----VWNLLkERKADRVVLFsTQFMDEADILADRKVF 652
Cdd:PRK11607 145 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRmqleVVDIL-ERVGVTCVMV-THDQEEAMTMAGRIAI 222
|
....*
gi 1958662872 653 ISRGK 657
Cdd:PRK11607 223 MNRGK 227
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
444-614 |
1.43e-23 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 101.24 E-value: 1.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNN------RLSEMAD 517
Cdd:COG4161 2 SIQLKNINCFY----GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfdfsqKPSEKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 518 LESVFRISGVCPQSNVqFDFLTVRENLrLFAKIR--GVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTA 595
Cdd:COG4161 78 RLLRQKVGMVFQQYNL-WPHLTVMENL-IEAPCKvlGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARA 155
|
170
....*....|....*....
gi 1958662872 596 ILGDSQIFLLDEPTAGLDP 614
Cdd:COG4161 156 LMMEPQVLLFDEPTAALDP 174
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
454-651 |
1.85e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 99.62 E-value: 1.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 454 YKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRlsemadlesvfRISGVCPQSNV 533
Cdd:NF040873 2 YGGRP----VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGA-----------RVAYVPQRSEV 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 534 QFDF-LTVRE--------NLRLFAKIRGVPPQEVEKEVQRV-LLELEMKNIQDilarnLSGGQKRKLTFGTAILGDSQIF 603
Cdd:NF040873 67 PDSLpLTVRDlvamgrwaRRGLWRRLTRDDRAAVDDALERVgLADLAGRQLGE-----LSGGQRQRALLAQGLAQEADLL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEAdILADRKV 651
Cdd:NF040873 142 LLDEPTTGLDAESRERIIALLAEEHARgATVVVVTHDLELV-RRADPCV 189
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
445-648 |
2.02e-23 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 100.84 E-value: 2.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-ADLESVFR 523
Cdd:COG1126 2 IEIENLHKSFGDL----EVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSkKDINKLRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQS-NVqFDFLTVRENLRLfA--KIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQK------RKLtfgt 594
Cdd:COG1126 78 KVGMVFQQfNL-FPHLTVLENVTL-ApiKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQqrvaiaRAL---- 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 595 AIlgDSQIFLLDEPTAGLDPFSRHRVWNLLKE------------------RK-ADRVVlfstqFMDEADILAD 648
Cdd:COG1126 152 AM--EPKVMLFDEPTSALDPELVGEVLDVMRDlakegmtmvvvthemgfaREvADRVV-----FMDGGRIVEE 217
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
445-663 |
2.37e-23 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 101.35 E-value: 2.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS-----EMAdle 519
Cdd:COG4559 2 LEAENLSVRLGGRT----LLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAawspwELA--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 svfRISGVCPQ-SNVQFDFlTVRENLRLFAKIRGVPPQEVEKEVQRVlleLEMKNIQDILARN---LSGGQKRKLTFGTA 595
Cdd:COG4559 75 ---RRRAVLPQhSSLAFPF-TVEEVVALGRAPHGSSAAQDRQIVREA---LALVGLAHLAGRSyqtLSGGEQQRVQLARV 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 596 IL-------GDSQIFLLDEPTAGLDPFSRHRVWNLLKERkADR-----VVL----FSTQFmdeadilADRKVFISRGKLK 659
Cdd:COG4559 148 LAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQL-ARRgggvvAVLhdlnLAAQY-------ADRILLLHQGRLV 219
|
....
gi 1958662872 660 CAGS 663
Cdd:COG4559 220 AQGT 223
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1272-1461 |
2.65e-23 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 99.16 E-value: 2.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTA--GQVLLKGSREGDAL--GFLGYCPQENALWPNLTVKEhlev 1347
Cdd:cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGRPLDKRSfrKIIGYVPQDDILHPTLTVRE---- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1348 fatvlglskshaavtitrladALQLQDQLKSpvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRA 1427
Cdd:cd03213 102 ---------------------TLMFAAKLRG----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR 156
|
170 180 190
....*....|....*....|....*....|....*
gi 1958662872 1428 iIKNTDRGALLTTHY-MAEAEALCDRVAILVSGRL 1461
Cdd:cd03213 157 -LADTGRTIICSIHQpSSEIFELFDKLLLLSQGRV 190
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
466-663 |
3.13e-23 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 103.26 E-value: 3.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 466 DLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRL---SEmadlESVF------RIsGVCPQSNVQFD 536
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRL-GGEVlqdSA----RGIFlpphrrRI-GYVFQEARLFP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 537 FLTVRENLRlFAkIRGVPPQEVEKEVQRV--LLELEmkniqDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAG 611
Cdd:COG4148 91 HLSVRGNLL-YG-RKRAPRAERRISFDEVveLLGIG-----HLLDRrpaTLSGGERQRVAIGRALLSSPRLLLMDEPLAA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 612 LDPFSRHRVWNLLkERKADRV---VLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:COG4148 164 LDLARKAEILPYL-ERLRDELdipILYVSHSLDEVARLADHVVLLEQGRVVASGP 217
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
445-642 |
3.29e-23 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 100.54 E-value: 3.29e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKG-SVTIYNNRLSEmadlESVF- 522
Cdd:COG1119 4 LELRNVTVRRGGKT----ILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGG----EDVWe 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 ---RIsGVCpqSNVQFDFLTVRENLR------LFAKIrGVPPQ---EVEKEVQRVLLELEMKNIQDILARNLSGGQKRKL 590
Cdd:COG1119 76 lrkRI-GLV--SPALQLRFPRDETVLdvvlsgFFDSI-GLYREptdEQRERARELLELLGLAHLADRPFGTLSQGEQRRV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDE 642
Cdd:COG1119 152 LIARALVKDPELLILDEPTAGLDLGARELLLALLDKlaAEGAPTLVLVTHHVEE 205
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
445-644 |
3.31e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 107.52 E-value: 3.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgkpsKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNrlsEMADleSVFRi 524
Cdd:NF033858 2 ARLEGVSHRYG----KTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGG---DMAD--ARHR- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQ---------SNVQFDfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTA 595
Cdd:NF033858 72 RAVCPRiaympqglgKNLYPT-LSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCA 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 596 ILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRV---VLFSTQFMDEAD 644
Cdd:NF033858 151 LIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERPgmsVLVATAYMEEAE 202
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
445-649 |
3.85e-23 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 105.10 E-value: 3.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESvfRI 524
Cdd:COG1129 5 LEMRGISKSFGG----VKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDA--QA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVC--PQSNVQFDFLTVRENL---RLFAKIRGVPPQEVEKEVQRVLLELEMkNIQ-DILARNLSGGQK------Rkltf 592
Cdd:COG1129 79 AGIAiiHQELNLVPNLSVAENIflgREPRRGGLIDWRAMRRRARELLARLGL-DIDpDTPVGDLSVAQQqlveiaR---- 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 593 gtAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADR 649
Cdd:COG1129 154 --ALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVaIIYISHRLDEVFEIADR 209
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
444-626 |
3.90e-23 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 100.09 E-value: 3.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNR--LSEMADLESV 521
Cdd:PRK11124 2 SIQLNGINCFYGAH----QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHfdFSKTPSDKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRIsgvcpQSNVQFDF--------LTVRENL-RLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTF 592
Cdd:PRK11124 78 REL-----RRNVGMVFqqynlwphLTVQQNLiEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152
|
170 180 190
....*....|....*....|....*....|....
gi 1958662872 593 GTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
445-658 |
4.07e-23 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 100.50 E-value: 4.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILsglsvptkgsvtiynNRlseMADLESVFRI 524
Cdd:COG1117 12 IEVRNLNVYYGDK----QALKDINLDIPENKVTALIGPSGCGKSTLLRCL---------------NR---MNDLIPGARV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGvcpqsNVQFD---------------------F-------LTVRENLRLFAKIRGVPPQE-----VEKEVQRVLLELEM 571
Cdd:COG1117 70 EG-----EILLDgediydpdvdvvelrrrvgmvFqkpnpfpKSIYDNVAYGLRLHGIKSKSeldeiVEESLRKAALWDEV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 572 KNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKV 651
Cdd:COG1117 145 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTA 224
|
....*..
gi 1958662872 652 FISRGKL 658
Cdd:COG1117 225 FFYLGEL 231
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
445-657 |
6.06e-23 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 99.06 E-value: 6.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIealkDLTLDiyEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRlsEMADLES---- 520
Cdd:COG3840 2 LRLDDLTYRYGDFPLRF----DLTIA--AGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILW-NGQ--DLTALPPaerp 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 ---VFrisgvcpQSNVQFDFLTVREN--------LRLFAKIRgvppQEVEKEVQRVllelemkNIQDILAR---NLSGGQ 586
Cdd:COG3840 73 vsmLF-------QENNLFPHLTVAQNiglglrpgLKLTAEQR----AQVEQALERV-------GLAGLLDRlpgQLSGGQ 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 587 KRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGK 657
Cdd:COG3840 135 RQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDElcRERGLTVLMVTHDPEDAARIADRVLLVADGR 207
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1270-1461 |
6.81e-23 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 96.73 E-value: 6.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSRegdalgflgycpqenalwpnltvkehlevfa 1349
Cdd:cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE------------------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1350 tvlglskshaaVTITRLADALQL------QdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1423
Cdd:cd03216 64 -----------VSFASPRDARRAgiamvyQ---------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958662872 1424 AIRAIiknTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03216 124 VIRRL---RAQGVavIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1272-1461 |
7.75e-23 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 104.33 E-value: 7.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-------REGDALGfLGYCPQENALWPNLTVKEH 1344
Cdd:COG1129 21 DGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEpvrfrspRDAQAAG-IAIIHQELNLVPNLSVAEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LevfatVLGLSKSHAAV--------TITRLADALQLQDQLKSPVKTLSEGvKRKLcfVL---SILGNPSILLLDEPSTGL 1413
Cdd:COG1129 100 I-----FLGREPRRGGLidwramrrRARELLARLGLDIDPDTPVGDLSVA-QQQL--VEiarALSRDARVLILDEPTASL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1414 DPEGQQQIWQAIRAIiknTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG1129 172 TEREVERLFRIIRRL---KAQGVaiIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1270-1489 |
8.74e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 105.98 E-value: 8.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGF-----LGYCPQENALWPNLTVKEH 1344
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFG-QPVDAGDIatrrrVGYMSQAFSLYGELTVRQN 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQA 1424
Cdd:NF033858 360 LELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRL 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1425 I-------RAIIkntdrgaLLTTHYMAEAEaLCDRVAILVSGRLRCIGSIQHLKSKFGKDyllemkvkTLEQ 1489
Cdd:NF033858 440 LielsredGVTI-------FISTHFMNEAE-RCDRISLMHAGRVLASDTPAALVAARGAA--------TLEE 495
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
464-656 |
9.30e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 98.69 E-value: 9.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA-DLESVFrisgvcpQSNVQFDFLTVRE 542
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGpDRMVVF-------QNYSLLPWLTVRE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 543 NLRLFAK--IRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRV 620
Cdd:TIGR01184 74 NIALAVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958662872 621 WNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRG 656
Cdd:TIGR01184 154 QEELMQiwEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1272-1461 |
9.86e-23 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 98.20 E-value: 9.86e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SR-EGDALGFL----GYCPQENALWPNLTVKE 1343
Cdd:COG2884 19 SDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGqdlSRlKRREIPYLrrriGVVFQDFRLLPDRTVYE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLEVFATVLGLSKSHAAvtiTRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:COG2884 99 NVALPLRVTGKSRKEIR---RRVREVLDlvgLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNLDPETSWE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 1421 IWQAIRAIikNtDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG2884 176 IMELLEEI--N-RRGTtvLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
444-676 |
1.01e-22 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 102.03 E-value: 1.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRlseMADLESVFR 523
Cdd:PRK11000 3 SVTLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR---MNDVPPAER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 604 LLDEPTAGLDPFSR--HRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLkkkwgvgYH 676
Cdd:PRK11000 156 LLDEPLSNLDAALRvqMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL-------YH 223
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
444-678 |
1.15e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 99.90 E-value: 1.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYK-GKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA---DLE 519
Cdd:PRK13641 2 SIKFENVDYIYSpGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETgnkNLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 SVFRISGVCPQ-SNVQFDFLTVRENLRLFAKIRGVPPQEVE----KEVQRVLLELEMKNIQDIlarNLSGGQKRKLTFGT 594
Cdd:PRK13641 82 KLRKKVSLVFQfPEAQLFENTVLKDVEFGPKNFGFSEDEAKekalKWLKKVGLSEDLISKSPF---ELSGGQMRRVAIAG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 595 AILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKL--KCAGSSLFLKKKW 671
Cdd:PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDyQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLikHASPKEIFSDKEW 238
|
....*..
gi 1958662872 672 GVGYHLS 678
Cdd:PRK13641 239 LKKHYLD 245
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
431-626 |
1.35e-22 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 104.74 E-value: 1.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 431 SFEPVSPEFHGKESIRI---RNISKEYKGKPSKIeALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVP-TKGSVT 506
Cdd:TIGR00955 6 RNSDVFGRVAQDGSWKQlvsRLRGCFCRERPRKH-LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgVKGSGS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 507 IYNNrlSEMADLESVFRISGVCPQSNVQFDFLTVRENLRLFAKIR---GVPPQEVEKEVQRVLLELEMKNIQDIL----- 578
Cdd:TIGR00955 85 VLLN--GMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRmprRVTKKEKRERVDEVLQALGLRKCANTRigvpg 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 579 -ARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:TIGR00955 163 rVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG 211
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
445-612 |
1.69e-22 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 103.33 E-value: 1.69e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:PRK09700 6 ISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENL---RLFA-KIRGVPP---QEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAIL 597
Cdd:PRK09700 82 IGIIYQELSVIDELTVLENLyigRHLTkKVCGVNIidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161
|
170
....*....|....*
gi 1958662872 598 GDSQIFLLDEPTAGL 612
Cdd:PRK09700 162 LDAKVIIMDEPTSSL 176
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1272-1441 |
1.78e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 97.25 E-value: 1.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD-----ALGFLGYcpqENALWPNLTVKEHLE 1346
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDpdvaeACHYLGH---RNAMKPALTVAENLE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 VFATVLGLSKSHAAVTItrlaDALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIR 1426
Cdd:PRK13539 96 FWAAFLGGEELDIAAAL----EAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIR 171
|
170
....*....|....*..
gi 1958662872 1427 AiikNTDRG--ALLTTH 1441
Cdd:PRK13539 172 A---HLAQGgiVIAATH 185
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1270-1461 |
2.35e-22 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 97.28 E-value: 2.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS----------REGdalgfLGYCPQENALWpNL 1339
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTdirqldpadlRRN-----IGYVPQDVTLF-YG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAVTITRLAD---------ALQLQDQLKSpvktLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:cd03245 93 TLRDNITLGAPLADDERILRAAELAGVTDfvnkhpnglDLQIGERGRG----LSGGQRQAVALARALLNDPPILLLDEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAeAEALCDRVAILVSGRL 1461
Cdd:cd03245 169 SAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LLDLVDRIIVMDSGRI 216
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
444-663 |
2.76e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 100.54 E-value: 2.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLEsvfR 523
Cdd:PRK10851 2 SIEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD---R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFLTVREN----LRLFAKiRGVPPQEVEKevQRVLLELEMKNIQDILAR---NLSGGQKRKLTFGTAI 596
Cdd:PRK10851 75 KVGFVFQHYALFRHMTVFDNiafgLTVLPR-RERPNAAAIK--AKVTQLLEMVQLAHLADRypaQLSGGQKQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRH--RVW--NLLKERKADRVvlFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK10851 152 AVEPQILLLDEPFGALDAQVRKelRRWlrQLHEELKFTSV--FVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1272-1471 |
2.94e-22 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 97.19 E-value: 2.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG------SREGDALGFL--GYCPQENALWPNLTV-- 1341
Cdd:cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGedisglSEAELYRLRRrmGMLFQSGALFDSLTVfe 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 ------KEHLEvfatvlgLSKShaavTITRLA----DALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:cd03261 97 nvafplREHTR-------LSEE----EIREIVleklEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1412 GLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLK 1471
Cdd:cd03261 166 GLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
445-658 |
3.36e-22 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 97.54 E-value: 3.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLS-----VPTKGSVtIYN--NRLSEMAD 517
Cdd:PRK14239 6 LQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNdlnpeVTITGSI-VYNghNIYSPRTD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 518 LESVFRISGVCPQSNVQFDFlTVRENLRLFAKIRGVPPQE-----VEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTF 592
Cdd:PRK14239 81 TVDLRKEIGMVFQQPNPFPM-SIYENVVYGLRLKGIKDKQvldeaVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 593 GTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1240-1471 |
3.43e-22 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 97.36 E-value: 3.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1240 DEKPVIVASCLRKEYAGKWKHclskkkakiatRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG--- 1316
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVL-----------DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGqdi 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1317 ----SREGDAL----GFLGycpQENALWPNLTVKEHLevfatvlglskshaavtitrladALQLQDQLKSPVKTLSEGVK 1388
Cdd:COG1127 70 tglsEKELYELrrriGMLF---QGGALFDSLTVFENV-----------------------AFPLREHTDLSEAEIRELVL 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1389 RKLCFV------------LS------------ILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMA 1444
Cdd:COG1127 124 EKLELVglpgaadkmpseLSggmrkrvalaraLALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLD 203
|
250 260
....*....|....*....|....*..
gi 1958662872 1445 EAEALCDRVAILVSGRLRCIGSIQHLK 1471
Cdd:COG1127 204 SAFAIADRVAVLADGKIIAEGTPEELL 230
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
1267-1470 |
4.89e-22 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 102.54 E-value: 4.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-----REGDALGFLGYCPQENALWpNLTV 1341
Cdd:COG4987 347 GRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVdlrdlDEDDLRRRIAVVPQRPHLF-DTTL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KEHLEVFATVLGLSKSHAAVTITRLADAL-QLQDQLKSPV----KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:COG4987 426 RENLRLARPDATDEELWAALERVGLGDWLaALPDGLDTWLgeggRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAA 505
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1417 GQQQIWQAIRAIIKntDRGALLTTHYMAEAEAlCDRVAILVSGRLRCIGSIQHL 1470
Cdd:COG4987 506 TEQALLADLLEALA--GRTVLLITHRLAGLER-MDRILVLEDGRIVEQGTHEEL 556
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
445-663 |
6.10e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 97.75 E-value: 6.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:PRK13644 2 IRLENVSYSY---PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQS-NVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:PRK13644 79 VGIVFQNpETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 604 LLDEPTAGLDPFSRHRVW-NLLKERKADRVVLFSTQFMDEADIlADRKVFISRGKLKCAGS 663
Cdd:PRK13644 159 IFDEVTSMLDPDSGIAVLeRIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGE 218
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
464-629 |
6.33e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 95.71 E-value: 6.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNnrlsEMADLESVFRISGVCPQSNVQFDFLTVREN 543
Cdd:PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG----GDIDDPDVAEACHYLGHRNAMKPALTVAEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 544 LRLFAKIRGVPPQEVEKEVQRVllelEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNL 623
Cdd:PRK13539 94 LEFWAAFLGGEELDIAAALEAV----GLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL 169
|
....*.
gi 1958662872 624 LKERKA 629
Cdd:PRK13539 170 IRAHLA 175
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
466-663 |
6.57e-22 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 99.42 E-value: 6.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 466 DLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA---DLESVFRISGVCPQSNVQFDFLTVRE 542
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRkgiFLPPEKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 543 NLRL-FAKIRGVPPQEVEKEVQRVLlelemkNIQDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRH 618
Cdd:TIGR02142 95 NLRYgMKRARPSERRISFERVIELL------GIGHLLGRlpgRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958662872 619 RVWNLLkERKADRV---VLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:TIGR02142 169 EILPYL-ERLHAEFgipILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
445-662 |
9.83e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 97.11 E-value: 9.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:PRK13647 5 IEVEDLHFRYK---DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:PRK13647 162 LDEPMAYLDPRGQETLMEILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1267-1461 |
1.24e-21 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 94.04 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-------REGDALGfLGYCP---QENALW 1336
Cdd:cd03215 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKpvtrrspRDAIRAG-IAYVPedrKREGLV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLevfatvlglskshaavTITRLadalqlqdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:cd03215 91 LDLSVAENI----------------ALSSL----------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 1417 GQQQIWQAIRAIiknTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03215 139 AKAEIYRLIREL---ADAGKavLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1243-1461 |
1.46e-21 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 95.89 E-value: 1.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1243 PVIVASCLRKEYAGKwkhclskkkaKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SR 1318
Cdd:COG3638 1 PMLELRNLSKRYPGG----------TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGqdvtAL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1319 EGDAL----GFLGYCPQENALWPNLTVKE--------HLEVFATVLGL-SKSHaavtITRLADALQ---LQDQLKSPVKT 1382
Cdd:COG3638 71 RGRALrrlrRRIGMIFQQFNLVPRLSVLTnvlagrlgRTSTWRSLLGLfPPED----RERALEALErvgLADKAYQRADQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1383 LSEG------VKRKLCfvlsilGNPSILLLDEPSTGLDPEGQQQIWQAIRAIikNTDRG--ALLTTHYMAEAEALCDRVA 1454
Cdd:COG3638 147 LSGGqqqrvaIARALV------QEPKLILADEPVASLDPKTARQVMDLLRRI--AREDGitVVVNLHQVDLARRYADRII 218
|
....*..
gi 1958662872 1455 ILVSGRL 1461
Cdd:COG3638 219 GLRDGRV 225
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
449-663 |
1.48e-21 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 95.73 E-value: 1.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 449 NISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRISGVC 528
Cdd:PRK10895 8 NLAKAYKGR----RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 529 PQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLL-ELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDE 607
Cdd:PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMeEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 608 PTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHlRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1272-1480 |
1.88e-21 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 101.45 E-value: 1.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG------SRegDAL-GFLGYCPQENALWpNLTVKEH 1344
Cdd:COG2274 492 DNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGidlrqiDP--ASLrRQIGVVLQDVFLF-SGTIREN 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LEVFATVLGLSKSHAAVTITRLAD-ALQLQDQLKSPV----KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:COG2274 569 ITLGDPDATDEEIIEAARLAGLHDfIEALPMGYDTVVgeggSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEA 648
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1420 QIWQAIRAIIKNtdRGALLTTHYMAEAeALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLL 1480
Cdd:COG2274 649 IILENLRRLLKG--RTVIIIAHRLSTI-RLADRIIVLDKGRIVEDGTHEELLARKGLYAEL 706
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1272-1460 |
1.98e-21 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 92.83 E-value: 1.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVL-----LKGSREGDALGFLGYCPQENALWpNLTVKEHLe 1346
Cdd:cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILidgvdLRDLDLESLRKNIAYVPQDPFLF-SGTIRENI- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 vfatvlglskshaavtitrladalqlqdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIR 1426
Cdd:cd03228 97 ------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR 140
|
170 180 190
....*....|....*....|....*....|....
gi 1958662872 1427 AIIKntDRGALLTTHYMAEAEaLCDRVAILVSGR 1460
Cdd:cd03228 141 ALAK--GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1273-1468 |
1.99e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 95.61 E-value: 1.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG------SREGDA--LGFLgycPQENALWPNLTVKEH 1344
Cdd:PRK13548 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGrpladwSPAELArrRAVL---PQHSSLSFPFTVEEV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LEVFATVLGLSKSHAAVTItrlADALQLQD--QLKS-PVKTLSEGVK------RKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:PRK13548 97 VAMGRAPHGLSRAEDDALV---AAALAQVDlaHLAGrDYPQLSGGEQqrvqlaRVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1416 EGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQ 1468
Cdd:PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
448-625 |
2.39e-21 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 93.46 E-value: 2.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 448 RNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSG--LSVPTKGSVTIYNNRLSemadlESVFRIS 525
Cdd:cd03232 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGrkTAGVITGEILINGRPLD-----KNFQRST 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 GVCPQSNVQFDFLTVRENLRLFAKIRGvppqevekevqrvllelemkniqdilarnLSGGQKRKLTFGTAILGDSQIFLL 605
Cdd:cd03232 82 GYVEQQDVHSPNLTVREALRFSALLRG-----------------------------LSVEQRKRLTIGVELAAKPSILFL 132
|
170 180
....*....|....*....|
gi 1958662872 606 DEPTAGLDPFSRHRVWNLLK 625
Cdd:cd03232 133 DEPTSGLDSQAAYNIVRFLK 152
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1272-1459 |
2.43e-21 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 93.86 E-value: 2.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR--EGDALGFLGYCPQEnalwPNL-----TVKEH 1344
Cdd:cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPikAKERRKSIGYVMQD----VDYqlftdSVREE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LEVFATVLGLSKSHAAvTITRLADALQLQDQLksPvKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQA 1424
Cdd:cd03226 93 LLLGLKELDAGNEQAE-TVLKDLDLYALKERH--P-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
|
170 180 190
....*....|....*....|....*....|....*
gi 1958662872 1425 IRaIIKNTDRGALLTTHYMAEAEALCDRVAILVSG 1459
Cdd:cd03226 169 IR-ELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1258-1461 |
3.14e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 94.26 E-value: 3.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1258 WKHCLSKKKA---KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG---DTKSTAGQVLLKGsREGDALGFL---GY 1328
Cdd:cd03234 7 WDVGLKAKNWnkyARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGrveGGGTTSGQILFNG-QPRKPDQFQkcvAY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1329 CPQENALWPNLTVKEHLeVFATVLGL---------SKSHAAVTITRLADAlQLQDQLkspVKTLSEGVKRKLCFVLSILG 1399
Cdd:cd03234 86 VRQDDILLPGLTVRETL-TYTAILRLprkssdairKKRVEDVLLRDLALT-RIGGNL---VKGISGGERRRVSIAVQLLW 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1400 NPSILLLDEPSTGLDPEGQQQIWQAIRAIIKnTDRGALLTTHY-MAEAEALCDRVAILVSGRL 1461
Cdd:cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQpRSDLFRLFDRILLLSSGEI 222
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
479-664 |
3.27e-21 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 96.79 E-value: 3.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 479 LLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-ADLESVfrisGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQE 557
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVpPHLRHI----NMVFQSYALFPHMTVEENVAFGLKMRKVPRAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 558 VEkevQRVLLELEMKNIQDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLK--ERKADRV 632
Cdd:TIGR01187 77 IK---PRVLEALRLVQLEEFADRkphQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKtiQEQLGIT 153
|
170 180 190
....*....|....*....|....*....|..
gi 1958662872 633 VLFSTQFMDEADILADRKVFISRGKLKCAGSS 664
Cdd:TIGR01187 154 FVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTP 185
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1250-1466 |
5.41e-21 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 93.46 E-value: 5.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1250 LRKEYAGKwkhclskkkakIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregDALGFLGYC 1329
Cdd:cd03300 6 VSKFYGGF-----------VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGK---DITNLPPHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1330 PQEN------ALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSI 1403
Cdd:cd03300 72 RPVNtvfqnyALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1404 LLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1265-1466 |
5.78e-21 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 93.90 E-value: 5.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1265 KKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS--REGDALGF---LGYCPQENALWPNL 1339
Cdd:cd03295 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEdiREQDPVELrrkIGYVIQQIGLFPHM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLevfATVLGLSKSHAAVTITRLADALQLQDQlkSPVK-------TLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:cd03295 91 TVEENI---ALVPKLLKWPKEKIRERADELLALVGL--DPAEfadryphELSGGQQQRVGVARALAADPPLLLMDEPFGA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1413 LDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:cd03295 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
445-677 |
5.96e-21 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 93.76 E-value: 5.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPsKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAdLESVFRI 524
Cdd:cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN-LRWLRSQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDfLTVRENLRLfakirGVPPQEVEkEVQRVlleLEMKNIQDILAR--------------NLSGGQKRKL 590
Cdd:cd03249 79 IGLVSQEPVLFD-GTIAENIRY-----GKPDATDE-EVEEA---AKKANIHDFIMSlpdgydtlvgergsQLSGGQKQRI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL-----FSTqfmdeadIL-ADRKVFISRGKLKCAGSS 664
Cdd:cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIviahrLST-------IRnADLIAVLQNGQVVEQGTH 221
|
250
....*....|...
gi 1958662872 665 LFLKKKWGVGYHL 677
Cdd:cd03249 222 DELMAQKGVYAKL 234
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
445-679 |
6.36e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 94.91 E-value: 6.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtIYNNR---LSEMADLESV 521
Cdd:PRK13636 6 LKVEELNYNY---SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKpidYSRKGLMKLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 602 IFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAG--SSLFLKKKWGVGYHL 677
Cdd:PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEmqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGnpKEVFAEKEMLRKVNL 241
|
..
gi 1958662872 678 SL 679
Cdd:PRK13636 242 RL 243
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
445-663 |
7.33e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 94.80 E-value: 7.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYK-GKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYN---NRLSEMADLES 520
Cdd:PRK13643 2 IKFEKVNYTYQpNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDivvSSTSKQKEIKP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 VFRISGVC---PQSnvQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRvllELEM----KNIQDILARNLSGGQKRKLTFG 593
Cdd:PRK13643 82 VRKKVGVVfqfPES--QLFEETVLKDVAFGPQNFGIPKEKAEKIAAE---KLEMvglaDEFWEKSPFELSGGQMRRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 594 TAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESiHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
445-620 |
8.57e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 93.61 E-value: 8.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:COG4604 2 IEIKNVSKRYGGKV----VLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SgVCPQSNVQFDFLTVREnLRLFAKI---RGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQkRKLTF-GTAILGDS 600
Cdd:COG4604 78 A-ILRQENHINSRLTVRE-LVAFGRFpysKGRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQ-RQRAFiAMVLAQDT 154
|
170 180
....*....|....*....|
gi 1958662872 601 QIFLLDEPTAGLDPfsRHRV 620
Cdd:COG4604 155 DYVLLDEPLNNLDM--KHSV 172
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
1272-1467 |
1.04e-20 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 92.91 E-value: 1.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALG------FLGYcpqenALWPNLTVKEH- 1344
Cdd:TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG-KQITEPGpdrmvvFQNY-----SLLPWLTVRENi 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 -LEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1423
Cdd:TIGR01184 76 aLAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958662872 1424 AIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSI 1467
Cdd:TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
445-658 |
1.50e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 93.05 E-value: 1.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLsvptkgsVTIYNN-RLSEMA--DLESV 521
Cdd:PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL-------IELYPEaRVSGEVylDGQDI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQFDF--------LTVRENLRL------FAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQK 587
Cdd:PRK14247 73 FKMDVIELRRRVQMVFqipnpipnLSIFENVALglklnrLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1266-1466 |
1.86e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 92.26 E-value: 1.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1266 KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR------EGDALGFLGYCPQENALWPNL 1339
Cdd:PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDisllplHARARRGIGYLPQEASIFRRL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHL-EVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQ 1418
Cdd:PRK10895 94 SVYDNLmAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958662872 1419 QQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:PRK10895 174 IDIKRIIEH-LRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
445-662 |
2.15e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 92.89 E-value: 2.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtIYNNRLSEMADLESVFRI 524
Cdd:PRK13648 8 IVFKNVSFQYQSDASF--TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRKH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQ--------SNVQFDFLTVRENlrlfakiRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAI 596
Cdd:PRK13648 85 IGIVFQnpdnqfvgSIVKYDVAFGLEN-------HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR-VVLFS-TQFMDEAdILADRKVFISRGKLKCAG 662
Cdd:PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHnITIISiTHDLSEA-MEADHVIVMNKGTVYKEG 224
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
1270-1428 |
2.53e-20 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 90.56 E-value: 2.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREG-----DALGFLGYCPQENALWPnl 1339
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGepldySRKGllerrQRVGLVFQDPDDQLFAA-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAvtiTRLADALQLQDQL---KSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:TIGR01166 85 DVDQDVAFGPLNLGLSEAEVE---RRVREALTAVGASglrERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161
|
170
....*....|..
gi 1958662872 1417 GQQQIWQAIRAI 1428
Cdd:TIGR01166 162 GREQMLAILRRL 173
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
444-634 |
2.90e-20 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 91.02 E-value: 2.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA--DLESv 521
Cdd:cd03244 2 DIEFKNVSLRYR--PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGlhDLRS- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 fRISgVCPQSNVQFDFlTVRENLRLFAkirgvppQEVEKEVQRVLLELEMKNIQDILA-----------RNLSGGQKRKL 590
Cdd:cd03244 79 -RIS-IIPQDPVLFSG-TIRSNLDPFG-------EYSDEELWQALERVGLKEFVESLPggldtvveeggENLSVGQRQLL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL 634
Cdd:cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVL 192
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
461-643 |
4.01e-20 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 97.50 E-value: 4.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 461 IEAlKDLT-------------LDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLsEMADLESVFRIsGV 527
Cdd:NF033858 267 IEA-RGLTmrfgdftavdhvsFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV-DAGDIATRRRV-GY 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 528 CPQSnvqfdF-----LTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:NF033858 344 MSQA-----FslygeLTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPEL 418
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKE--RKaDRVVLF-STQFMDEA 643
Cdd:NF033858 419 LILDEPTSGVDPVARDMFWRLLIElsRE-DGVTIFiSTHFMNEA 461
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1270-1473 |
4.02e-20 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 96.37 E-value: 4.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGF------LGYCPQeNALWPNLTVKE 1343
Cdd:COG4988 352 ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILING-VDLSDLDPaswrrqIAWVPQ-NPYLFAGTIRE 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HlevfatvLGLSKSHAavTITRLADAL----------QLQDQLKSPV----KTLSEGVKRKLCFVLSILGNPSILLLDEP 1409
Cdd:COG4988 430 N-------LRLGRPDA--SDEELEAALeaagldefvaALPDGLDTPLgeggRGLSGGQAQRLALARALLRDAPLLLLDEP 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1410 STGLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAeALCDRVAILVSGRLRCIGSIQHLKSK 1473
Cdd:COG4988 501 TAHLDAETEAEILQALRRLAK--GRTVILITHRLALL-AQADRILVLDDGRIVEQGTHEELLAK 561
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1262-1465 |
4.60e-20 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 91.94 E-value: 4.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS--------------REGDALGFlg 1327
Cdd:cd03294 31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQdiaamsrkelrelrRKKISMVF-- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1328 ycpQENALWPNLTVKEHLEVFATVLGLSKshaAVTITRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSIL 1404
Cdd:cd03294 109 ---QSFALLPHRTVLENVAFGLEVQGVPR---AEREERAAEALElvgLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1405 LLDEPSTGLDP----EGQQQIWQairaIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:cd03294 183 LMDEAFSALDPlirrEMQDELLR----LQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
445-666 |
5.55e-20 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 90.71 E-value: 5.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:PRK11614 6 LSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRL---FAKirgvpPQEVEKEVQRV---LLELEMKNIQDilARNLSGGQKRKLTFGTAILG 598
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEENLAMggfFAE-----RDQFQERIKWVyelFPRLHERRIQR--AGTMSGGEQQMLAIGRALMS 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFST-QFMDEADILADRKVFISRGK--LKCAGSSLF 666
Cdd:PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVeQNANQALKLADRGYVLENGHvvLEDTGDALL 225
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1242-1416 |
6.04e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 95.52 E-value: 6.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1242 KPVIVASCLRKEYAGKwkhclskkkaKIAtRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVllkgsREGD 1321
Cdd:COG0488 313 KKVLELEGLSKSYGDK----------TLL-DDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV-----KLGE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1322 ALgFLGYCPQENA-LWPNLTVKEHLEVFATvlGLSKSHAavtITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGN 1400
Cdd:COG0488 377 TV-KIGYFDQHQEeLDPDKTVLDELRDGAP--GGTEQEV---RGYLGRFLFSGDDAFKPVGVLSGGEKARLALAKLLLSP 450
|
170
....*....|....*.
gi 1958662872 1401 PSILLLDEPSTGLDPE 1416
Cdd:COG0488 451 PNVLLLDEPTNHLDIE 466
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1268-1460 |
8.33e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 90.92 E-value: 8.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDA-----LG------FLGYCPqen 1333
Cdd:COG1101 19 KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGkdvTKLPEYkrakyIGrvfqdpMMGTAP--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1334 alwpNLTVKEHL-------EVFATVLGLSKSHAAVTITRLAD-ALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILL 1405
Cdd:COG1101 96 ----SMTIEENLalayrrgKRRGLRRGLTKKRRELFRELLATlGLGLENRLDTKVGLLSGGQRQALSLLMATLTKPKLLL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:COG1101 172 LDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGR 226
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
445-658 |
1.39e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 91.30 E-value: 1.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEY-KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVT-IYNN-RLSEMADLESV 521
Cdd:PRK13651 3 IKVKNIVKIFnKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEwIFKDeKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 F---------------RISGVCPQSNVQFDFL-------TVRENLRLFAKIRGVPPQEVEKevqRVLLELEMKNI-QDIL 578
Cdd:PRK13651 83 VleklviqktrfkkikKIKEIRRRVGVVFQFAeyqlfeqTIEKDIIFGPVSMGVSKEEAKK---RAAKYIELVGLdESYL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 579 AR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFIS 654
Cdd:PRK13651 160 QRspfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNVLEWTKRTIFFK 239
|
....
gi 1958662872 655 RGKL 658
Cdd:PRK13651 240 DGKI 243
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
424-663 |
1.42e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 91.84 E-value: 1.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 424 PAPLSGGsfepvspefhgkESIRIRNISKEYKGK-PSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTK 502
Cdd:PRK13631 13 PNPLSDD------------IILRVKNLYCVFDEKqENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 503 GSVTIYNNRLSEMADLESVF----------------RISGVCPQSNVQFDFLTVRENLrLFAKIR-GVPPQEVEKEVQRV 565
Cdd:PRK13631 81 GTIQVGDIYIGDKKNNHELItnpyskkiknfkelrrRVSMVFQFPEYQLFKDTIEKDI-MFGPVAlGVKKSEAKKLAKFY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 566 LLELEMKniQDILARN---LSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMD 641
Cdd:PRK13631 160 LNKMGLD--DSYLERSpfgLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANnKTVFVITHTME 237
|
250 260
....*....|....*....|..
gi 1958662872 642 EADILADRKVFISRGKLKCAGS 663
Cdd:PRK13631 238 HVLEVADEVIVMDKGKILKTGT 259
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
444-663 |
1.44e-19 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 90.07 E-value: 1.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFR 523
Cdd:PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISgVCPQSNVQFDFLTVRE--------NLRLFAKIRgvppQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTA 595
Cdd:PRK11231 78 LA-LLPQHHLTPEGITVRElvaygrspWLSLWGRLS----AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 596 ILGDSQIFLLDEPTAGLDpfSRHRV--WNLLKERKAD-RVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK11231 153 LAQDTPVVLLDEPTTYLD--INHQVelMRLMRELNTQgKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1270-1507 |
1.45e-19 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 95.58 E-value: 1.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREGDALGF-LGYCPQ---ENaLWPNLT 1340
Cdd:NF033858 16 ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGgdmadARHRRAVCPrIAYMPQglgKN-LYPTLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:NF033858 95 VFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1421 IWQAIRAIikNTDRGA---LLTTHYMAEAEAlCDRVAILVSGRLRCIGSIQHLKSKFGKDyllemkvkTLEQ--VELLnt 1495
Cdd:NF033858 175 FWELIDRI--RAERPGmsvLVATAYMEEAER-FDWLVAMDAGRVLATGTPAELLARTGAD--------TLEAafIALL-- 241
|
250
....*....|..
gi 1958662872 1496 evlrlfPQAARQ 1507
Cdd:NF033858 242 ------PEEKRR 247
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
444-637 |
1.50e-19 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 94.51 E-value: 1.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKPSKieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAdlESVFR 523
Cdd:PRK11160 338 SLTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS--EAALR 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 --ISgVCPQSnVQFDFLTVRENLRLfAKirgvpPQEVEKEVQRVL--LELEmKNIQDI---------LARNLSGGQKRKL 590
Cdd:PRK11160 414 qaIS-VVSQR-VHLFSATLRDNLLL-AA-----PNASDEALIEVLqqVGLE-KLLEDDkglnawlgeGGRQLSGGEQRRL 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFST 637
Cdd:PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMIT 531
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
445-635 |
1.70e-19 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 89.21 E-value: 1.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgkPSKiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRI 524
Cdd:cd03253 1 IEFENVTFAYD--PGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV-TLDSLRRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDfLTVRENLRlFAKIrGVPPQEVEKEVQRVLLELEMKNIQD----ILARN---LSGGQKRKLTFGTAIL 597
Cdd:cd03253 77 IGVVPQDTVLFN-DTIGYNIR-YGRP-DATDEEVIEAAKAAQIHDKIMRFPDgydtIVGERglkLSGGEKQRVAIARAIL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLF 635
Cdd:cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIV 191
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
446-649 |
1.87e-19 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 93.82 E-value: 1.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRL---SEMADLEsvf 522
Cdd:PRK11288 6 SFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMrfaSTTAALA--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 riSGVC---------PQsnvqfdfLTVRENL---RLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKL 590
Cdd:PRK11288 79 --AGVAiiyqelhlvPE-------MTVAENLylgQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEADILADR 649
Cdd:PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEgRVILYVSHRMEEIFALCDA 209
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1272-1461 |
4.37e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 92.77 E-value: 4.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREGDAL--GfLGYCP---QENALWPNLTV 1341
Cdd:COG1129 269 RDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpvriRSPRDAIraG-IAYVPedrKGEGLVLDLSI 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KE-----HLEVFATVLGLSKSHAAVTITRLADALQL----QDQlksPVKTLSEGVKRKLcfVLS--ILGNPSILLLDEPS 1410
Cdd:COG1129 348 REnitlaSLDRLSRGGLLDRRRERALAEEYIKRLRIktpsPEQ---PVGNLSGGNQQKV--VLAkwLATDPKVLILDEPT 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIiknTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG1129 423 RGIDVGAKAEIYRLIREL---AAEGKavIVISSELPELLGLSDRILVMREGRI 472
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1272-1461 |
4.66e-19 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 86.12 E-value: 4.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-----REGDALGFLGYCPQENALwpnltvkehle 1346
Cdd:cd03246 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGAdisqwDPNELGDHVGYLPQDDEL----------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 vfatvlgLSKShaavtitrLADALqlqdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIR 1426
Cdd:cd03246 88 -------FSGS--------IAENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958662872 1427 AIIKntdRGA--LLTTHYMaEAEALCDRVAILVSGRL 1461
Cdd:cd03246 141 ALKA---AGAtrIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
445-649 |
4.78e-19 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 92.81 E-value: 4.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLES-VFR 523
Cdd:PRK15439 12 LCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAhQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVcPQSNVQFDFLTVRENLrLFakirGVP-PQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:PRK15439 88 IYLV-PQEPLLFPNLSVKENI-LF----GLPkRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADR 649
Cdd:PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVgIVFISHKLPEIRQLADR 209
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
445-677 |
5.40e-19 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 87.93 E-value: 5.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSeMADLESVFRI 524
Cdd:cd03252 1 ITFEHVRFRYK--PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA-LADPAWLRRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDfLTVRENLrlfAKIRGVPPQEVEKEVQRV------LLELEmKNIQDILARN---LSGGQKRKLTFGTA 595
Cdd:cd03252 78 VGVVLQENVLFN-RSIRDNI---ALADPGMSMERVIEAAKLagahdfISELP-EGYDTIVGEQgagLSGGQRQRIAIARA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 596 ILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMdEADILADRKVFISRGKLKCAGSSLFLKKKWGVGY 675
Cdd:cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAENGLYA 231
|
..
gi 1958662872 676 HL 677
Cdd:cd03252 232 YL 233
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1270-1479 |
6.12e-19 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 90.66 E-value: 6.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSRegdalgfLGYCP----------QENALWPNL 1339
Cdd:PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD-------LSHVPpyqrpinmmfQSYALFPHM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:PRK11607 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1420 QIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS----IQHLKSKFGKDYL 1479
Cdd:PRK11607 187 RMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEpeeiYEHPTTRYSAEFI 250
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
462-658 |
8.16e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 87.98 E-value: 8.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 462 EALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGL-----SVPTKGSVTIYN-NRLSEMADLESVFRISGVCPQSNVQF 535
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGrNIYSPDVDPIEVRREVGMVFQYPNPF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 536 DFLTVRENLRLFAKIRGV--PPQEVEKEVQRVL----LELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPT 609
Cdd:PRK14267 98 PHLTIYDNVAIGVKLNGLvkSKKELDERVEWALkkaaLWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 610 AGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK14267 178 ANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
445-697 |
8.29e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 91.79 E-value: 8.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLS--VPTKGSVtIYN-NRLSEMADLESV 521
Cdd:TIGR03269 1 IEVKNLTKKFDGK----EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyEPTSGRI-IYHvALCEKCGYVERP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQF-----DFL----TVRENL---------RLFA----------KIRGVPP--QEVEKEVQRVLLELEM 571
Cdd:TIGR03269 76 SKVGEPCPVCGGTLepeevDFWnlsdKLRRRIrkriaimlqRTFAlygddtvldnVLEALEEigYEGKEAVGRAVDLIEM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 572 KNIQDI---LARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADIL 646
Cdd:TIGR03269 156 VQLSHRithIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEavKASGISMVLTSHWPEVIEDL 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 647 ADRKVFISRGKLKCAGSSLFLKKKWGVGYHLSLQLKEVCVPENITSL--VKQH 697
Cdd:TIGR03269 236 SDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVrnVSKR 288
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
226-656 |
9.69e-19 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 93.25 E-value: 9.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 226 RDSAFWLSWGLLYAGFVFVMALSLalvIKSVQFLILTSFTVVF----SLFLLYGLSMISLAFLMSVLVR----------- 290
Cdd:TIGR00956 486 RKYALYHPSADAIASIISEIPFKI---IESVVFNIILYFMVNFrrtaGRFFFYLLILFICTLAMSHLFRsigavtktlse 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 291 KSVLTGLTVFLLTIFwgsLGFTALYRYLPAPLEWtLSLFSPFAFT---LGMAQLLRVDYDLNSNAPPDPA----GSSNLI 363
Cdd:TIGR00956 563 AMTPAAILLLALSIY---TGFAIPRPSMLGWSKW-IYYVNPLAYAfesLMVNEFHGRRFECSQYVPSGGGydnlGVTNKV 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 364 AA-------------TNFM-LAFD----------------ALLYLALTMYFEKVL-PNEygHQRSPLFFLKPSfwVQPRK 412
Cdd:TIGR00956 639 CTvvgaepgqdyvdgDDYLkLSFQyynshkwrnfgiiigfTVFFFFVYILLTEFNkGAK--QKGEILVFRRGS--LKRAK 714
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 413 PAHVILED-GIDPAPLSGGSFEPVSPEFH------------GKESIRIRNISKEYKGKPSKIEALKDLTLDIYEGQITAL 479
Cdd:TIGR00956 715 KAGETSASnKNDIEAGEVLGSTDLTDESDdvndekdmekesGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 480 LGHSGAGKSTLLNILSGLSvpTKGSVTiYNNRLSEMADLESVF-RISGVCPQSNVQFDFLTVRENLRLFAKIRgvPPQEV 558
Cdd:TIGR00956 795 MGASGAGKTTLLNVLAERV--TTGVIT-GGDRLVNGRPLDSSFqRSIGYVQQQDLHLPTSTVRESLRFSAYLR--QPKSV 869
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 559 EKE-----VQRVLLELEMKNIQDIL----ARNLSGGQKRKLTFGTAILGDSQIFL-LDEPTAGLDPFSRHRVWNLLKE-R 627
Cdd:TIGR00956 870 SKSekmeyVEEVIKLLEMESYADAVvgvpGEGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKlA 949
|
490 500 510
....*....|....*....|....*....|.
gi 1958662872 628 KADRVVLfSTQFMDEADILA--DRKVFISRG 656
Cdd:TIGR00956 950 DHGQAIL-CTIHQPSAILFEefDRLLLLQKG 979
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
445-646 |
9.90e-19 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 92.09 E-value: 9.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpsKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSE--MADLESVF 522
Cdd:TIGR02203 331 VEFRNVTFRYPGR--DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADytLASLRRQV 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGvcpQSNVQFDFlTVRENLRLfakirGVPPQEVEKEVQRVLlelEMKNIQDILAR--------------NLSGGQKR 588
Cdd:TIGR02203 409 ALVS---QDVVLFND-TIANNIAY-----GRTEQADRAEIERAL---AAAYAQDFVDKlplgldtpigengvLLSGGQRQ 476
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 589 KLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVW----NLLKER-------------KADRVVLfstqfMDEADIL 646
Cdd:TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQaaleRLMQGRttlviahrlstieKADRIVV-----MDDGRIV 546
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1270-1475 |
1.06e-18 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 89.79 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSlKMISGDTKSTAGQVLLKgsregdalgFLGYCPQENALW------------- 1336
Cdd:NF000106 28 AVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWR---------F*TWCANRRALRrtig*hrpvr*gr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 -PNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:NF000106 98 rESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDP 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1416 EGQQQIWQAIRAIIKNtdrGA--LLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFG 1475
Cdd:NF000106 178 RTRNEVWDEVRSMVRD---GAtvLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG 236
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
445-656 |
1.11e-18 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 86.72 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYK-----GKpsKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI-YNNRLSEMADL 518
Cdd:COG4778 5 LEVENLSKTFTlhlqgGK--RLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrHDGGWVDLAQA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 ES--VFRIS----GVCPQsnvqfdFLTVR----------ENLRLfakiRGVPPQEVEKEVQRVLLELemkNIQDILAR-- 580
Cdd:COG4778 83 SPreILALRrrtiGYVSQ------FLRVIprvsaldvvaEPLLE----RGVDREEARARARELLARL---NLPERLWDlp 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 581 --NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTqFMDEA--DILADRKVFISRG 656
Cdd:COG4778 150 paTFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGI-FHDEEvrEAVADRVVDVTPF 228
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
462-614 |
1.12e-18 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 85.87 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 462 EALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADL--ESVFRIS---GVCPQsnvqfd 536
Cdd:TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEphENILYLGhlpGLKPE------ 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 537 fLTVRENLRLFAKIRGVPPQEVEKEVQRVLLelemKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDP 614
Cdd:TIGR01189 88 -LSALENLHFWAAIHGGAQRTIEDALAAVGL----TGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDK 160
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1270-1461 |
1.20e-18 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 86.31 E-value: 1.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR----EGDALGFL----GYCPQENALWPNLTV 1341
Cdd:cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDvsdlRGRAIPYLrrkiGVVFQDFRLLPDRNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEgqqQI 1421
Cdd:cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD---TT 172
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958662872 1422 WQAIRAIIKNTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03292 173 WEIMNLLKKINKAGTtvVVATHAKELVDTTRHRVIALERGKL 214
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1267-1467 |
1.72e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 87.80 E-value: 1.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDALGFL----GYCPQ--ENALWP 1337
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvdiTDKKVKLSDIrkkvGLVFQypEYQLFE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NlTVKEHLEVFATVLGLSKSH------AAVTITRLaDALQLQDqlKSPVKtLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:PRK13637 99 E-TIEKDIAFGPINLGLSEEEienrvkRAMNIVGL-DYEDYKD--KSPFE-LSGGQKRRVAIAGVVAMEPKILILDEPTA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1412 GLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSI 1467
Cdd:PRK13637 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1242-1459 |
1.78e-18 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 90.88 E-value: 1.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1242 KPVIVASCLRKEYAGKwkhclskkkakIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR--- 1318
Cdd:PRK15439 9 PPLLCARSISKQYSGV-----------EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPcar 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1319 ----EGDALGfLGYCPQENALWPNLTVKEHLevfatVLGLSKSHAAVT-ITRLADALQLQDQLKSPVKTLsEGVKRKLCF 1393
Cdd:PRK15439 78 ltpaKAHQLG-IYLVPQEPLLFPNLSVKENI-----LFGLPKRQASMQkMKQLLAALGCQLDLDSSAGSL-EVADRQIVE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1394 VL-SILGNPSILLLDEPSTGLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSG 1459
Cdd:PRK15439 151 ILrGLMRDSRILILDEPTASLTPAETERLFSRIRE-LLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1270-1461 |
1.81e-18 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 90.74 E-value: 1.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREGDALGfLG----YcpQENALWPNLT 1340
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGqemrfASTTAALA-AGvaiiY--QELHLVPEMT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLEV--FATVLGLSKSHAAVTITRLA-DALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEG 1417
Cdd:PRK11288 96 VAENLYLgqLPHKGGIVNRRLLNYEAREQlEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958662872 1418 QQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK11288 176 IEQLFRVIRE-LRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
463-654 |
2.06e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 86.76 E-value: 2.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 463 ALKDLTLDIYEGQITALLGHSGAGKSTLL---NILSGL--SVPTKGSVTIYNNRL--SEMADLESVFRISGVCPQSNvQF 535
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILrcfNRLNDLipGFRVEGKVTFHGKNLyaPDVDPVEVRRRIGMVFQKPN-PF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 536 DfLTVRENLRLFAKIRGVP---PQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGL 612
Cdd:PRK14243 104 P-KSIYDNIAYGARINGYKgdmDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958662872 613 DPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFIS 654
Cdd:PRK14243 183 DPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1267-1461 |
2.24e-18 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 86.20 E-value: 2.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALG--------FLGYCPQENALWPN 1338
Cdd:TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGkklrklrrRIGMIFQHYNLIER 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKEHLEV--------FATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:TIGR02315 94 LTVLENVLHgrlgykptWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:TIGR02315 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
444-652 |
2.50e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 86.63 E-value: 2.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKGKpsKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLS-----VPTKGSVTIYNNRLSEM-AD 517
Cdd:PRK14258 7 AIKVNNLSFYYDTQ--KI--LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNeleseVRVEGRVEFFNQNIYERrVN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 518 LESVFR-ISGVCPQSNVqFDfLTVRENLRLFAKIRGVPPQE-----VEKEVQRVLLELEMKNIQDILARNLSGGQKRKLT 591
Cdd:PRK14258 83 LNRLRRqVSMVHPKPNL-FP-MSVYDNVAYGVKIVGWRPKLeiddiVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 592 FGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKER--KADRVVLFSTQFMDEADILADRKVF 652
Cdd:PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLrlRSELTMVIVSHNLHQVSRLSDFTAF 223
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
445-658 |
2.53e-18 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 86.34 E-value: 2.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSV-----TIYNNR-LSEMADL 518
Cdd:PRK11264 4 IEVKNLVKKFHGQ----TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIrvgdiTIDTARsLSQQKGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 ESVFRIS-GVCPQSNVQFDFLTVRENLRLFAKI-RGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAI 596
Cdd:PRK11264 80 IRQLRQHvGFVFQNFNLFPHRTVLENIIEGPVIvKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHRVWNL---LKERKadRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTirqLAQEK--RTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1274-1465 |
2.77e-18 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 89.13 E-value: 2.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDALG-FLGYCPQENALWPNLTVKE----- 1343
Cdd:PRK09536 22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGddveALSARAASrRVASVPQDTSLSFEFDVRQvvemg 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 ---HLEVFATVlgLSKSHAAV--TITRlADALQLQDQlksPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQ 1418
Cdd:PRK09536 102 rtpHRSRFDTW--TETDRAAVerAMER-TGVAQFADR---PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 1419 QQIWQAIRAIIkNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:PRK09536 176 VRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1270-1461 |
3.12e-18 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 87.42 E-value: 3.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG---DTKSTAGQVLLKGSregDALGF------------LGYCPQE-- 1332
Cdd:COG0444 20 AVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGE---DLLKLsekelrkirgreIQMIFQDpm 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 NALWPNLTVKEHL-EVFATVLGLSKSHAavtITRLADALQLQdQLKSPVKT-------LSEGVKRKLCFVLSILGNPSIL 1404
Cdd:COG0444 97 TSLNPVMTVGDQIaEPLRIHGGLSKAEA---RERAIELLERV-GLPDPERRldrypheLSGGMRQRVMIARALALEPKLL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1405 LLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG0444 173 IADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRI 229
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
448-626 |
3.15e-18 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 85.64 E-value: 3.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 448 RNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-----ADLES-- 520
Cdd:PRK11629 9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLssaakAELRNqk 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 ---VFRISGVCPqsnvqfDFlTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAIL 597
Cdd:PRK11629 89 lgfIYQFHHLLP------DF-TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV 161
|
170 180
....*....|....*....|....*....
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGE 190
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
445-633 |
4.11e-18 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 83.42 E-value: 4.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNnrlsemADLESVfri 524
Cdd:cd03246 1 LEVENVSFRYPGAEPPV--LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG------ADISQW--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sgvcpqsnvqfdfltvreNLRLFAKIRGVPPQEVEkevqrvLLElemkniqDILARN-LSGGQKRKLTFGTAILGDSQIF 603
Cdd:cd03246 70 ------------------DPNELGDHVGYLPQDDE------LFS-------GSIAENiLSGGQRQRLGLARALYGNPRIL 118
|
170 180 190
....*....|....*....|....*....|...
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNL---LKERKADRVV 633
Cdd:cd03246 119 VLDEPNSHLDVEGERALNQAiaaLKAAGATRIV 151
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
445-658 |
4.84e-18 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 89.32 E-value: 4.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLsemadlesvfRI 524
Cdd:COG3845 6 LELRGITKRFGG----VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPV----------RI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 S----------GVCPQSNVQFDFLTVRENLRLFAKIRG---VPPQEVEKEVQRVL----LELEMkniqDILARNLSGGQK 587
Cdd:COG3845 72 RsprdaialgiGMVHQHFMLVPNLTVAENIVLGLEPTKggrLDRKAARARIRELSerygLDVDP----DAKVEDLSVGEQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:COG3845 148 QRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRlAAEGKSIIFITHKLREVMAIADRVTVLRRGKV 219
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
445-631 |
5.24e-18 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 84.79 E-value: 5.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-----ADLE 519
Cdd:COG4181 9 IELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALdedarARLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 S-----VFrisgvcpQSnvqfdF-----LTVRENLRLFAKIRGVPP--QEVEKEVQRV-LLELEmkniqDILARNLSGG- 585
Cdd:COG4181 89 ArhvgfVF-------QS-----FqllptLTALENVMLPLELAGRRDarARARALLERVgLGHRL-----DHYPAQLSGGe 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 586 QKRkltfgTAI----LGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR 631
Cdd:COG4181 152 QQR-----VALarafATEPAILFADEPTGNLDAATGEQIIDLLFELNRER 196
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
441-658 |
5.63e-18 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 83.25 E-value: 5.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 441 GKESIRIRNISKEYkgkpskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSemadles 520
Cdd:cd03215 1 GEPVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 vfrisgvcpqsnvqfdFLTVRENLRlfAKIRGVPpqeveKEVQRVLLELEM---KNIqdILARNLSGGQKRKLTFGTAIL 597
Cdd:cd03215 66 ----------------RRSPRDAIR--AGIAYVP-----EDRKREGLVLDLsvaENI--ALSSLLSGGNQQKVVLARWLA 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKErKADR---VVLFSTQfMDEADILADRKVFISRGKL 658
Cdd:cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRE-LADAgkaVLLISSE-LDELLGLCDRILVMYEGRI 182
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1278-1453 |
5.98e-18 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 85.15 E-value: 5.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsregdALGFLGYCPQEnalwpnLTVKEHLEVFATVLGLSKS 1357
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-------ELDTVSYKPQY------IKADYEGTVRDLLSSITKD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1358 HAAVT--ITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRG 1435
Cdd:cd03237 89 FYTHPyfKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT 168
|
170
....*....|....*...
gi 1958662872 1436 ALLTTHYMAEAEALCDRV 1453
Cdd:cd03237 169 AFVVEHDIIMIDYLADRL 186
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
447-626 |
6.44e-18 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 89.78 E-value: 6.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-ADLESVFRIS 525
Cdd:PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLdADALAQLRRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 --GVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:PRK10535 87 hfGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVI 166
|
170 180
....*....|....*....|...
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:PRK10535 167 LADEPTGALDSHSGEEVMAILHQ 189
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1273-1461 |
7.43e-18 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 84.68 E-value: 7.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS----------REGDAL-GFLGYCPQENALWPNLTV 1341
Cdd:COG4161 20 DINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfdfsqkpseKAIRLLrQKVGMVFQQYNLWPHLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KEHL-EVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:COG4161 100 MENLiEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958662872 1421 IWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG4161 180 VVEIIRE-LSQTGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
440-658 |
7.63e-18 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 84.44 E-value: 7.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 440 HGKESIRIRNISKEYKGKPSKiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSeMADLE 519
Cdd:cd03248 7 HLKGIVKFQNVTFAYPTRPDT-LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS-QYEHK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 SVFRISGVCPQSNVQFDfLTVRENLRLfaKIRGVPPQEVEKEVQRV-------LLELEMKNIQDILARNLSGGQKRKLTF 592
Cdd:cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAY--GLQSCSFECVKEAAQKAhahsfisELASGYDTEVGEKGSQLSGGQKQRVAI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 593 GTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADiLADRKVFISRGKL 658
Cdd:cd03248 162 ARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
1260-1460 |
7.93e-18 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 84.54 E-value: 7.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1260 HCLSK--KKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDAL----GFLGYC 1329
Cdd:cd03256 4 ENLSKtyPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGtdinKLKGKALrqlrRQIGMI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1330 PQENALWPNLTVKE--------HLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNP 1401
Cdd:cd03256 84 FQQFNLIERLSVLEnvlsgrlgRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQP 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1402 SILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:cd03256 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1270-1466 |
8.42e-18 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 84.70 E-value: 8.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDA------LGFLGycpQENALWPNLTVKE 1343
Cdd:cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVpvqernVGFVF---QHYALFRHMTVFD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 H----LEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:cd03296 94 NvafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 1420 QIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1272-1441 |
8.45e-18 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 83.70 E-value: 8.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDA----LGFLGYcpqENALWPNLTVKEH 1344
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGepiRRQRDEyhqdLLYLGH---QPGIKTELTALEN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LEVFATVlglsksHAAVTITRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQI 1421
Cdd:PRK13538 95 LRFYQRL------HGPGDDEALWEALAqvgLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168
|
170 180
....*....|....*....|..
gi 1958662872 1422 wqaIRAIIKNTDRG--ALLTTH 1441
Cdd:PRK13538 169 ---EALLAQHAEQGgmVILTTH 187
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
464-672 |
1.04e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 86.47 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDI-----YEGqITALLGHSGAGKSTLLNILSGLSVPTKGSVTIyNNRLseMADLEsvfriSGVC-P--QSNVQF 535
Cdd:PRK11144 10 LGDLCLTVnltlpAQG-ITAIFGRSGAGKTSLINAISGLTRPQKGRIVL-NGRV--LFDAE-----KGIClPpeKRRIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 536 DF--------LTVRENLRLfaKIRGVPPQEVEKEVQrvLLelemkNIQDILAR---NLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:PRK11144 81 VFqdarlfphYKVRGNLRY--GMAKSMVAQFDKIVA--LL-----GIEPLLDRypgSLSGGEKQRVAIGRALLTAPELLL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLkERKADRV---VLFSTQFMDEADILADRKVFISRGKLKCAGSslfLKKKWG 672
Cdd:PRK11144 152 MDEPLASLDLPRKRELLPYL-ERLAREInipILYVSHSLDEILRLADRVVVLEQGKVKAFGP---LEEVWA 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
441-626 |
1.19e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 88.20 E-value: 1.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 441 GKESIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNrlsemadles 520
Cdd:COG0488 312 GKKVLELEGLSKSYGDKT----LLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGET---------- 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 vFRIsGVCPQSNVQFDF-LTVRENLRLFA------KIRGV------PPQEVEKEVqrvllelemkniqdilaRNLSGGQK 587
Cdd:COG0488 378 -VKI-GYFDQHQEELDPdKTVLDELRDGApggteqEVRGYlgrflfSGDDAFKPV-----------------GVLSGGEK 438
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:COG0488 439 ARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDD 477
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1272-1461 |
1.38e-17 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 83.35 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDALGFL----GYCPQENALWPNLTVKEH 1344
Cdd:cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGlklTDDKKNINELrqkvGMVFQQFNLFPHLTVLEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 L-EVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1423
Cdd:cd03262 97 ItLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958662872 1424 AIRAIIKnTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03262 177 VMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
445-658 |
1.63e-17 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 84.47 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYK-----GKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA--- 516
Cdd:TIGR02769 3 LEVRDVTHTYRtgglfGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDrkq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 ------DLESVFR--ISGVCPQSNVQFdflTVRENLRLFAKIRgvpPQEVEKEVQRVLLELEMK-NIQDILARNLSGGQK 587
Cdd:TIGR02769 83 rrafrrDVQLVFQdsPSAVNPRMTVRQ---IIGEPLRHLTSLD---ESEQKARIAELLDMVGLRsEDADKLPRQLSGGQL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD--RVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAfgTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
447-659 |
1.78e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 87.81 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNrlsemadlesvFRIsG 526
Cdd:COG0488 1 LENLSKSFGGRP----LLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG-----------LRI-G 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 527 VCPQSNVQFDFLTVRENLrlfakIRGVPP-QEVEKEVQRVLLELEMKN------------------------IQDILAR- 580
Cdd:COG0488 65 YLPQEPPLDDDLTVLDTV-----LDGDAElRALEAELEELEAKLAEPDedlerlaelqeefealggweaearAEEILSGl 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 581 ------------NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHrvW--NLLKERKA-------DRVvlfstqF 639
Cdd:COG0488 140 gfpeedldrpvsELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIE--WleEFLKNYPGtvlvvshDRY------F 211
|
250 260
....*....|....*....|
gi 1958662872 640 MDEadiLADRKVFISRGKLK 659
Cdd:COG0488 212 LDR---VATRILELDRGKLT 228
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1272-1468 |
2.16e-17 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 83.63 E-value: 2.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsrEGDALG---------FLGYCPQENALWPNLTVk 1342
Cdd:COG4559 18 DDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRL----NGRPLAawspwelarRRAVLPQHSSLAFPFTV- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 ehLEVFAtvLGL----SKSHAAVTITR----LADALQLQDQLkspVKTLSEGVK------RKLCFVL-SILGNPSILLLD 1407
Cdd:COG4559 93 --EEVVA--LGRaphgSSAAQDRQIVRealaLVGLAHLAGRS---YQTLSGGEQqrvqlaRVLAQLWePVDGGPRWLFLD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1408 EPSTGLDPEGQQQIWQAIRAIiknTDRGA--------L-LTTHYmaeaealCDRVAILVSGRLRCIGSIQ 1468
Cdd:COG4559 166 EPTSALDLAHQHAVLRLARQL---ARRGGgvvavlhdLnLAAQY-------ADRILLLHQGRLVAQGTPE 225
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
442-663 |
2.24e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 84.40 E-value: 2.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 442 KESIRIRNISKEYKGKPSKIEaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESV 521
Cdd:PRK13650 2 SNIIEVKNLTFKYKEDQEKYT-LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 602 IFLLDEPTAGLDPFSRHRVWNLLKERKADR--VVLFSTQFMDEAdILADRKVFISRGKLKCAGS 663
Cdd:PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYqmTVISITHDLDEV-ALSDRVLVMKNGQVESTST 223
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
445-666 |
2.53e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 83.99 E-value: 2.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:PRK13642 5 LEVENLVFKYE-KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEAdILADRKVFISRGKL--KCAGSSLF 666
Cdd:PRK13642 164 LDESTSMLDPTGRQEIMRVIHEikEKYQLTVLSITHDLDEA-ASSDRILVMKAGEIikEAAPSELF 228
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
445-663 |
2.60e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 84.29 E-value: 2.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGK-PSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSemADLESVFR 523
Cdd:PRK13645 7 IILDNVSYTYAKKtPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP--ANLKKIKE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFL-------TVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKniQDILARN---LSGGQKRKLTFG 593
Cdd:PRK13645 85 VKRLRKEIGLVFQFPeyqlfqeTIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP--EDYVKRSpfeLSGGQKRRVALA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 594 TAILGDSQIFLLDEPTAGLDPFSRHRVWNL---LKERKADRVVLFsTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLferLNKEYKKRIIMV-THNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
463-663 |
3.28e-17 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.86 E-value: 3.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 463 ALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAD--LESVFRIS-GVCPQSNVQFDFLT 539
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDaeLREVRRKKiAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 540 VRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHR 619
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 620 VWNLLKERKA--DRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK10070 203 MQDELVKLQAkhQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1272-1414 |
3.47e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 86.66 E-value: 3.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLL-KGSRegdalgfLGYCPQENALWPNLTVKEH-LEVFA 1349
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIpKGLR-------IGYLPQEPPLDDDLTVLDTvLDGDA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1350 TVLGLSKSHAAVT-------------------------------ITRLADALQL-QDQLKSPVKTLSEGVKRK--LCFVL 1395
Cdd:COG0488 88 ELRALEAELEELEaklaepdedlerlaelqeefealggweaearAEEILSGLGFpEEDLDRPVSELSGGWRRRvaLARAL 167
|
170
....*....|....*....
gi 1958662872 1396 siLGNPSILLLDEPSTGLD 1414
Cdd:COG0488 168 --LSEPDLLLLDEPTNHLD 184
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1268-1473 |
4.11e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 83.12 E-value: 4.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREG--DALGFLGYCPQEnalwPN---- 1338
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGitiSKENlkEIRKKIGIIFQN----PDnqfi 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 -LTVKEHLevfatVLGL-----SKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCfVLSILG-NPSILLLDEPST 1411
Cdd:PRK13632 98 gATVEDDI-----AFGLenkkvPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVA-IASVLAlNPEIIIFDESTS 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1412 GLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAeALCDRVAILVSGRLRCIGSIQH-LKSK 1473
Cdd:PRK13632 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEiLNNK 233
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1273-1473 |
4.53e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 83.24 E-value: 4.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsrEGDALgflgycpQENALWpnlTVKEHLE-VF--- 1348
Cdd:PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII----DGDLL-------TEENVW---DIRHKIGmVFqnp 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1349 ------ATV-----LGLSK---SHAAVtITRLADALQL---QD-QLKSPVKtLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:PRK13650 91 dnqfvgATVeddvaFGLENkgiPHEEM-KERVNEALELvgmQDfKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEAT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAeALCDRVAILVSGRLRCIGSIQHLKSK 1473
Cdd:PRK13650 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
468-658 |
4.94e-17 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 81.94 E-value: 4.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 468 TLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLEsvfRISGVCPQSNVQFDFLTVREN---- 543
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR---RPVSMLFQENNLFSHLTVAQNiglg 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 544 ----LRLFAKIRgvppQEVEKEVQRVLLElemkniqDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFS 616
Cdd:PRK10771 96 lnpgLKLNAAQR----EKLHAIARQMGIE-------DLLARlpgQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958662872 617 RHRVWNLLKERKADR--VVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK10771 165 RQEMLTLVSQVCQERqlTLLMVSHSLEDAARIAPRSLVVADGRI 208
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1250-1461 |
6.13e-17 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 83.97 E-value: 6.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1250 LRKEYAgkwkhclSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGflgyc 1329
Cdd:COG1135 7 LSKTFP-------TKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDG-VDLTALS----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1330 pqENALWP------------NL----TVKEH----LEvfatVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVK- 1388
Cdd:COG1135 74 --ERELRAarrkigmifqhfNLlssrTVAENvalpLE----IAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKq 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1389 -----RKLCfvlsilGNPSILLLDEPSTGLDPEGQQQIWQAIRAIikNTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG1135 148 rvgiaRALA------NNPKVLLCDEATSALDPETTRSILDLLKDI--NRELGLtiVLITHEMDVVRRICDRVAVLENGRI 219
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
445-698 |
6.24e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 82.93 E-value: 6.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmADLESVFRI 524
Cdd:PRK13652 4 IETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK-ENIREVRKF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFLTVRENLRLFAKIR-GVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINlGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 604 LLDEPTAGLDPFSRH---RVWNLLKERKADRVVlFSTQFMDEADILADRKVFISRGKLKCAGS--SLFLKKKWGVGYHLS 678
Cdd:PRK13652 160 VLDEPTAGLDPQGVKeliDFLNDLPETYGMTVI-FSTHQLDLVPEMADYIYVMDKGRIVAYGTveEIFLQPDLLARVHLD 238
|
250 260
....*....|....*....|
gi 1958662872 679 LQLkevcVPENITSLVKQHI 698
Cdd:PRK13652 239 LPS----LPKLIRSLQAQGI 254
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
462-681 |
8.10e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 82.36 E-value: 8.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 462 EALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRL--SEMADLESVFRISGVCPQSNVQFDFLT 539
Cdd:PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLdySKRGLLALRQQVATVFQDPEQQIFYTD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 540 VRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHR 619
Cdd:PRK13638 95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 620 VWNLLKE--RKADRVVLfSTQFMDEADILADRKVFISRGKLKCAGS--SLF----------LKKKWGVGYHLSLQL 681
Cdd:PRK13638 175 MIAIIRRivAQGNHVII-SSHDIDLIYEISDAVYVLRQGQILTHGApgEVFacteameqagLTQPWLVKLHTQLGL 249
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
1264-1480 |
9.44e-17 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 81.38 E-value: 9.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDA-LGFL----GYCPQENALWpN 1338
Cdd:cd03252 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAdPAWLrrqvGVVLQENVLF-N 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKEHLEVFATVLGLsksHAAVTITRLADALQLQDQLKSPVKT--------LSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:cd03252 90 RSIRDNIALADPGMSM---ERVIEAAKLAGAHDFISELPEGYDTivgeqgagLSGGQRQRIAIARALIHNPRILIFDEAT 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKNtdRGALLTTHYMAEAEAlCDRVAILVSGRLRCIGSIQHLKSKFGKDYLL 1480
Cdd:cd03252 167 SALDYESEHAIMRNMHDICAG--RTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1259-1465 |
9.56e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 85.62 E-value: 9.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1259 KHCLSKKKAKI-ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSRE------------GDALGF 1325
Cdd:TIGR03269 287 KRYISVDRGVVkAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEwvdmtkpgpdgrGRAKRY 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1326 LGYCPQENALWPNLTVKEHLeVFATVLGLSKSHA---AVTITRLA-----DALQLQDQLKSpvkTLSEGVKRKLCFVLSI 1397
Cdd:TIGR03269 367 IGILHQEYDLYPHRTVLDNL-TEAIGLELPDELArmkAVITLKMVgfdeeKAEEILDKYPD---ELSEGERHRVALAQVL 442
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1398 LGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:TIGR03269 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1275-1470 |
1.03e-16 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 80.95 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1275 SFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregdalGFLGYCP---------QENALWPNLTVKEHL 1345
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQ------DLTALPPaerpvsmlfQENNLFPHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 evfatVLGLSKS--HAAVTITRLADALQ---LQDQLKSPVKTLSEGVKRKL----CFVlsiLGNPsILLLDEPSTGLDPE 1416
Cdd:COG3840 93 -----GLGLRPGlkLTAEQRAQVEQALErvgLAGLLDRLPGQLSGGQRQRValarCLV---RKRP-ILLLDEPFSALDPA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1417 GQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:COG3840 164 LRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAAL 217
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1268-1461 |
1.67e-16 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 80.30 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG-----DTKSTAGQVLLKG----SREGDALGF---LGYCPQENAL 1335
Cdd:cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGkdiyDLDVDVLELrrrVGMVFQKPNP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 WPnLTVKEHLEVFATVLGLSKSHAAVTITRlaDALQ---LQDQLKSPVK--TLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:cd03260 93 FP-GSIYDNVAYGLRLHGIKLKEELDERVE--EALRkaaLWDEVKDRLHalGLSGGQQQRLCLARALANEPEVLLLDEPT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIikNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03260 170 SALDPISTAKIEELIAEL--KKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
444-663 |
1.71e-16 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 85.18 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYkGKPSKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFR 523
Cdd:TIGR01193 473 DIVINDVSYSY-GYGSNI--LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI-DRHTLRQ 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFlTVRENLRLFAKiRGVPPQEVEKEVQRVLLELEMKNIQDIL-------ARNLSGGQKRKLTFGTAI 596
Cdd:TIGR01193 549 FINYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYqtelseeGSSISGGQKQRIALARAL 626
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHR-VWNLLKERkaDRVVLFSTQFMDEADiLADRKVFISRGKLKCAGS 663
Cdd:TIGR01193 627 LTDSKVLILDESTSNLDTITEKKiVNNLLNLQ--DKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGS 691
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1274-1441 |
1.99e-16 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 79.46 E-value: 1.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsrEGDALGFLGYCPQENALW--------PNLTVKEHL 1345
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL----NGGPLDFQRDSIARGLLYlghapgikTTLSVLENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 EVFATVlglsksHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAI 1425
Cdd:cd03231 95 RFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
170
....*....|....*...
gi 1958662872 1426 RAiikNTDRG--ALLTTH 1441
Cdd:cd03231 169 AG---HCARGgmVVLTTH 183
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
448-613 |
2.06e-16 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 79.61 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 448 RNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPT---KGSVTIYNNRLSEMA---DLESV 521
Cdd:cd03233 7 RNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAekyPGEII 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FrisgvCPQSNVQFDFLTVRENLRLFAKIRGvppqevekevqrvllelemkniqDILARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:cd03233 87 Y-----VSEEDVHFPTLTVRETLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRAS 138
|
170
....*....|..
gi 1958662872 602 IFLLDEPTAGLD 613
Cdd:cd03233 139 VLCWDNSTRGLD 150
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1270-1508 |
2.13e-16 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 84.56 E-value: 2.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGflgycpqeNALWPNLTVKEHLEVFA 1349
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAIS--------SGLNGQLTGIENIELKG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1350 TVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAiI 1429
Cdd:PRK13545 111 LMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNE-F 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1430 KNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGkDYLLEMKVKTLEQVELLNTEVLRLFPQAARQE 1508
Cdd:PRK13545 190 KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD-EFLKKYNQMSVEERKDFREEQISQFQHGLLQE 267
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1278-1461 |
2.21e-16 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 79.46 E-value: 2.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG--------SREGDALGFlgycpQENALWPNLTVKEHLEvfa 1349
Cdd:cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGvdvtaappADRPVSMLF-----QENNLFAHLTVEQNVG--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1350 tvLGLSKSH--AAVTITRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQA 1424
Cdd:cd03298 93 --LGLSPGLklTAEDRQAIEVALArvgLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958662872 1425 IRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:cd03298 171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
445-657 |
2.55e-16 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 77.49 E-value: 2.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSkieaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYnnrlsemadlesvfri 524
Cdd:cd03221 1 IELENLSKTYGGKLL----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG---------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sgvcpqSNVQFDFLtvrenlrlfakirgvpPQevekevqrvllelemkniqdilarnLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:cd03221 61 ------STVKIGYF----------------EQ-------------------------LSGGEKMRLALAKLLLENPNLLL 93
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKERKadRVVLFST---QFMDEadiLADRKVFISRGK 657
Cdd:cd03221 94 LDEPTNHLDLESIEALEEALKEYP--GTVILVShdrYFLDQ---VATKIIELEDGK 144
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1242-1466 |
3.64e-16 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 82.30 E-value: 3.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1242 KPVIVASCLRKEYAGKwkhclskkkakIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD 1321
Cdd:PRK09452 12 SPLVELRGISKSFDGK-----------EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1322 AlgflgycPQEN----------ALWPNLTVKEHLevfATVLGLSKSHAAVTITRLADAL---QLQDQLKSPVKTLSEGVK 1388
Cdd:PRK09452 81 V-------PAENrhvntvfqsyALFPHMTVFENV---AFGLRMQKTPAAEITPRVMEALrmvQLEEFAQRKPHQLSGGQQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1389 RKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1270-1461 |
3.75e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 80.51 E-value: 3.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDAL-------GFLGYCPQENALWPnl 1339
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGepiKYDKKSLlevrktvGIVFQNPDDQLFAP-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAvtiTRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:PRK13639 95 TVEEDVAFGPLNLGLSKEEVE---KRVKEALKavgMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 1417 GQQQIwqaIRAIIKNTDRG--ALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK13639 172 GASQI---MKLLYDLNKEGitIIISTHDVDLVPVYADKVYVMSDGKI 215
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1270-1468 |
4.33e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 83.30 E-value: 4.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGF-------LGYCPQENALWPNLTVK 1342
Cdd:PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNKLDHklaaqlgIGIIYQELSVIDELTVL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 EHLEV----FATVLGLS-------KSHAAVTITRLAdalqLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:PRK09700 99 ENLYIgrhlTKKVCGVNiidwremRVRAAMMLLRVG----LKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1412 GLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQ 1468
Cdd:PRK09700 175 SLTNKEVDYLFLIMNQ-LRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
460-613 |
4.44e-16 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 84.51 E-value: 4.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 460 KIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSvpTKGSVTiYNNRLSEMADLESVF-RISGVCPQSNVQFDFL 538
Cdd:PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIE-GDIRISGFPKKQETFaRISGYCEQNDIHSPQV 968
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 539 TVRENLRLFAKIRgvPPQEVEKE-----VQRVLLELEMKNIQDILA-----RNLSGGQKRKLTFGTAILGDSQIFLLDEP 608
Cdd:PLN03140 969 TVRESLIYSAFLR--LPKEVSKEekmmfVDEVMELVELDNLKDAIVglpgvTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046
|
....*
gi 1958662872 609 TAGLD 613
Cdd:PLN03140 1047 TSGLD 1051
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
447-658 |
5.25e-16 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 79.72 E-value: 5.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtiynnrlsemadlesvfrISG 526
Cdd:PRK11247 15 LNAVSKRYGER----TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL------------------LAG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 527 VCPQSNvqfdfltVRENLRL-FAKIRGVPPQEVEKEV---------QRVLLELEMKNIQDILAR---NLSGGQKRKLTFG 593
Cdd:PRK11247 73 TAPLAE-------AREDTRLmFQDARLLPWKKVIDNVglglkgqwrDAALQALAAVGLADRANEwpaALSGGQKQRVALA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 594 TAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESlwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
441-664 |
5.54e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 79.71 E-value: 5.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 441 GKESIRIRNISKEYKGKPSKiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLsvptkgsVTIYNNRLSEMADL-- 518
Cdd:PRK14246 4 GKSAEDVFNISRLYLYINDK-AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL-------IEIYDSKIKVDGKVly 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 --ESVFRIS--------GVCPQSNVQFDFLTVRENLRLFAKIRGVPPQ-EVEKEVQRVLLELEM-KNIQDIL---ARNLS 583
Cdd:PRK14246 76 fgKDIFQIDaiklrkevGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKrEIKKIVEECLRKVGLwKEVYDRLnspASQLS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 584 GGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK14246 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
|
.
gi 1958662872 664 S 664
Cdd:PRK14246 236 S 236
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1250-1461 |
6.68e-16 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 81.00 E-value: 6.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1250 LRKEYAGKwkhclskKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGflgyc 1329
Cdd:PRK11153 7 ISKVFPQG-------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG-QDLTALS----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1330 pqENALWP------------NL----TVKEH----LEvfatVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKR 1389
Cdd:PRK11153 74 --EKELRKarrqigmifqhfNLlssrTVFDNvalpLE----LAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1390 KLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIikNTDRG--ALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI--NRELGltIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
445-644 |
7.40e-16 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 77.89 E-value: 7.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIE-ALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNnrlsemadlesvfR 523
Cdd:cd03250 1 ISVEDASFTWDSGEQETSfTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDflTVRENLrLFakirGVP--PQEVEKEVQRVLLELEMKNIQD-----ILAR--NLSGGQKRKLTFGT 594
Cdd:cd03250 68 IAYVSQEPWIQNG--TIRENI-LF----GKPfdEERYEKVIKACALEPDLEILPDgdlteIGEKgiNLSGGQKQRISLAR 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 595 AILGDSQIFLLDEPTAGLDPFSRHRVWN--LLKERKADRVVLFST---QFMDEAD 644
Cdd:cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNKTRILVThqlQLLPHAD 195
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
441-658 |
7.85e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 82.54 E-value: 7.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 441 GKESIRIRNISKEY----KGKpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynnRLSE-- 514
Cdd:TIGR03269 276 GEPIIKVRNVSKRYisvdRGV---VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV---RVGDew 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 515 --MADLE-----SVFRISGVCPQSNVQFDFLTVRENL---------RLFAKIRGVppqEVEKEVQrvLLELEMKNIQDIL 578
Cdd:TIGR03269 350 vdMTKPGpdgrgRAKRYIGILHQEYDLYPHRTVLDNLteaiglelpDELARMKAV---ITLKMVG--FDEEKAEEILDKY 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 579 ARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWN-LLKERKA-DRVVLFSTQFMDEADILADRKVFISRG 656
Cdd:TIGR03269 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHsILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDG 504
|
..
gi 1958662872 657 KL 658
Cdd:TIGR03269 505 KI 506
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1270-1473 |
9.15e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 79.51 E-value: 9.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREG-----DALGFLGYCPqENALWpNL 1339
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGkpidySRKGlmklrESVGMVFQDP-DNQLF-SA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1420 QIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSK 1473
Cdd:PRK13636 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
445-658 |
1.02e-15 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 78.60 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYN-NRLSEMADLESVFR 523
Cdd:PRK09493 2 IEFKNVSKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlKVNDPKVDERLIRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFLTVRENLrLFA--KIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:PRK09493 78 EAGMVFQQFYLFPHLTALENV-MFGplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 602 IFLLDEPTAGLDPFSRH---RVWNLLKERKADRVVLfsTQFMDEADILADRKVFISRGKL 658
Cdd:PRK09493 157 LMLFDEPTSALDPELRHevlKVMQDLAEEGMTMVIV--THEIGFAEKVASRLIFIDKGRI 214
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
441-762 |
1.21e-15 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 80.55 E-value: 1.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 441 GKESIRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAG--KSTLLNILSGlsvPTKGSVTIynNRLSEMADL 518
Cdd:NF000106 10 ARNAVEVRGLVKHF----GEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGRRPW--RF*TWCANR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 ESVFRISGVC-PQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAIL 597
Cdd:NF000106 81 RALRRTIG*HrPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEADILADRKVFISRGKLKCAGSSLFLKKKWGvGYH 676
Cdd:NF000106 161 GRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDgATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG-GRT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 677 LSLQLKEVCVPENITSLVKQHIPE--AKLSAERERTLVyTLPLETTYRFPELCQSLDScPGLGIDSYGVSMTTLNEVFLK 754
Cdd:NF000106 240 LQIRPAHAAELDRMVGAIAQAGLDgiAGATADHEDGVV-NVPIVSDEQLSAVVGMLGE-RGFTISGHQHPSAQL*EVFLA 317
|
....*...
gi 1958662872 755 LEGKSAIE 762
Cdd:NF000106 318 ITGQKTSE 325
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
1251-1476 |
1.65e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 82.02 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1251 RKEYAGKWKHCLSKKKA-KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG-DTKST--AGQVLLKGSREGdaLGFL 1326
Cdd:TIGR00955 20 WKQLVSRLRGCFCRERPrKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFrSPKGVkgSGSVLLNGMPID--AKEM 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1327 ----GYCPQENALWPNLTVKEHLEVFATV-LG--LSKSHAAVTITRLADALQLQD------QLKSPVKTLSEGVKRKLCF 1393
Cdd:TIGR00955 98 raisAYVQQDDLFIPTLTVREHLMFQAHLrMPrrVTKKEKRERVDEVLQALGLRKcantriGVPGRVKGLSGGERKRLAF 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1394 VLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAiIKNTDRGALLTTHY-MAEAEALCDRVAILVSGRLRCIGSIQHLKS 1472
Cdd:TIGR00955 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG-LAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
....
gi 1958662872 1473 KFGK 1476
Cdd:TIGR00955 257 FFSD 260
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
467-637 |
1.87e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 81.81 E-value: 1.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 467 LTLDIYEGQITALLGHSGAGKSTLLNILSGLsVPTKGSVTIYNNRLSEMaDLESVFR-ISGVcpQSNVQFDFLTVRENLR 545
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELREL-DPESWRKhLSWV--GQNPQLPHGTLRDNVL 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 546 LfAKirgvpPQEVEKEVQRVLlelEMKNIQDILAR--------------NLSGGQKRKLTFGTAILGDSQIFLLDEPTAG 611
Cdd:PRK11174 445 L-GN-----PDASDEQLQQAL---ENAWVSEFLPLlpqgldtpigdqaaGLSVGQAQRLALARALLQPCQLLLLDEPTAS 515
|
170 180
....*....|....*....|....*.
gi 1958662872 612 LDPFSRHRVWNLLKERKADRVVLFST 637
Cdd:PRK11174 516 LDAHSEQLVMQALNAASRRQTTLMVT 541
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1273-1441 |
3.63e-15 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 75.74 E-value: 3.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTKSTAGQVLLKGSREGDALG-FLGYCPQENALWPNLTVKEHLEVFA 1349
Cdd:cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGrkTAGVITGEILINGRPLDKNFQrSTGYVEQQDVHSPNLTVREALRFSA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1350 TVLGLSKSHAavtitrladalqlqdqlkspvKTLSEGVKrklcfvlsILGNPSILLLDEPSTGLDPEGQQQIWQAIRAII 1429
Cdd:cd03232 105 LLRGLSVEQR---------------------KRLTIGVE--------LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA 155
|
170
....*....|..
gi 1958662872 1430 kNTDRGALLTTH 1441
Cdd:cd03232 156 -DSGQAILCTIH 166
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1268-1473 |
5.47e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 77.18 E-value: 5.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVL--------------LKGSREGDALGFlgycpQ-- 1331
Cdd:PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITiagyhitpetgnknLKKLRKKVSLVF-----Qfp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1332 ENALWPNlTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQL--KSPVKtLSEGVKRKLCFVLSILGNPSILLLDEP 1409
Cdd:PRK13641 95 EAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLisKSPFE-LSGGQMRRVAIAGVMAYEPEILCLDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1410 STGLDPEGQQQIWQairaIIKNTDRGA---LLTTHYMAEAEALCDRVAILVSGRLrcigsIQHLKSK 1473
Cdd:PRK13641 173 AAGLDPEGRKEMMQ----LFKDYQKAGhtvILVTHNMDDVAEYADDVLVLEHGKL-----IKHASPK 230
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1261-1480 |
6.81e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 76.77 E-value: 6.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1261 CLSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-------RE-GDALGFLGYCPQE 1332
Cdd:PRK13652 10 CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEpitkeniREvRKFVGLVFQNPDD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 NALWPnlTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:PRK13652 90 QIFSP--TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1413 LDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLkskFGKDYLL 1480
Cdd:PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI---FLQPDLL 232
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1264-1461 |
7.16e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 76.66 E-value: 7.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDalgflgycpqENALWpNLTVKE 1343
Cdd:PRK13633 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD----------EENLW-DIRNKA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLeVF--------ATV-----------LGLSKSHAAvtiTRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNP 1401
Cdd:PRK13633 88 GM-VFqnpdnqivATIveedvafgpenLGIPPEEIR---ERVDESLKkvgMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1402 SILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAeALCDRVAILVSGRL 1461
Cdd:PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA-VEADRIIVMDSGKV 222
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
1266-1461 |
8.39e-15 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 74.27 E-value: 8.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1266 KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDAlgflgycpqENALWPNLTV---K 1342
Cdd:cd03247 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL---------EKALSSLISVlnqR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 EHLevFATVLGlskshaavtitrlaDALQLQdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIW 1422
Cdd:cd03247 84 PYL--FDTTLR--------------NNLGRR---------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958662872 1423 QAIRAIIKntDRGALLTTHYMAEAEALcDRVAILVSGRL 1461
Cdd:cd03247 139 SLIFEVLK--DKTLIWITHHLTGIEHM-DKILFLENGKI 174
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1259-1464 |
8.50e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.06 E-value: 8.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1259 KHCLSKKKAKIatRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR-----EGDAL----GFLGYC 1329
Cdd:PRK09700 269 RNVTSRDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDisprsPLDAVkkgmAYITES 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1330 PQENALWPNLTVKEHLEVfATVLGLSKSHAAVTI------TRLADALQLQDQLKSP-----VKTLSEGVKRKLCFVLSIL 1398
Cdd:PRK09700 347 RRDNGFFPNFSIAQNMAI-SRSLKDGGYKGAMGLfhevdeQRTAENQRELLALKCHsvnqnITELSGGNQQKVLISKWLC 425
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1399 GNPSILLLDEPSTGLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCI 1464
Cdd:PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQ-LADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1269-1460 |
8.69e-15 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 76.18 E-value: 8.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1269 IATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----------SREGDALGFlgycpQENALWP 1337
Cdd:PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGqhieglpghqiARMGVVRTF-----QHVRLFR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NLTVKE------HLEVFATVL-GLSKSHA-----AVTITRLA---DALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPS 1402
Cdd:PRK11300 94 EMTVIEnllvaqHQQLKTGLFsGLLKTPAfrraeSEALDRAAtwlERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1403 ILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:PRK11300 174 ILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
445-624 |
1.12e-14 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 75.20 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM-----ADLE 519
Cdd:PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMdeearAKLR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 520 SvfRISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGD 599
Cdd:PRK10584 87 A--KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164
|
170 180
....*....|....*....|....*
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNLL 624
Cdd:PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLL 189
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
447-613 |
1.17e-14 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 77.45 E-value: 1.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYkGKPSKIEalkDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI----YNNRLSEMADLESVF 522
Cdd:PRK11432 9 LKNITKRF-GSNTVID---NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIdgedVTHRSIQQRDICMVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 risgvcpQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:PRK11432 85 -------QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157
|
170
....*....|.
gi 1958662872 603 FLLDEPTAGLD 613
Cdd:PRK11432 158 LLFDEPLSNLD 168
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1264-1489 |
1.26e-14 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 75.62 E-value: 1.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVllkgSREGDalgfLGYCPQENALWPNLTVKE 1343
Cdd:PRK13546 33 KNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV----DRNGE----VSVIAISAGLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1423
Cdd:PRK13546 105 NIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1424 AIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFgKDYLLEMKVKTLEQ 1489
Cdd:PRK13546 185 KIYE-FKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY-EAFLNDFKKKSKAE 248
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
445-651 |
1.28e-14 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 75.88 E-value: 1.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYK-----GKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA--- 516
Cdd:PRK10419 4 LNVSGLSHHYAhgglsGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNraq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 ------DLESVFR--ISGVCPQSNVQFdflTVRENLRlfaKIRGVPPQEVEKEVQRVLLELEMK-NIQDILARNLSGGQK 587
Cdd:PRK10419 84 rkafrrDIQMVFQdsISAVNPRKTVRE---IIREPLR---HLLSLDKAERLARASEMLRAVDLDdSVLDKRPPQLSGGQL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLK--------------------ERKADRVVLfstqfMDEADILA 647
Cdd:PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKklqqqfgtaclfithdlrlvERFCQRVMV-----MDNGQIVE 232
|
....
gi 1958662872 648 DRKV 651
Cdd:PRK10419 233 TQPV 236
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
466-613 |
1.39e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 74.07 E-value: 1.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 466 DLTLDiyEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADleSVFRISGVCPQSNVQFDFLTVRENLR 545
Cdd:cd03231 20 SFTLA--AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD--SIARGLLYLGHAPGIKTTLSVLENLR 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 546 LFAKIRGvppqevEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:cd03231 96 FWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1272-1461 |
1.60e-14 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 75.12 E-value: 1.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTS----LKMISGDTKSTAGQVLLKGSR-EGDAL-GFLGYCPQEN---ALWPNLTVK 1342
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTcaaaLGILPAGVRQTAGRVLLDGKPvAPCALrGRKIATIMQNprsAFNPLHTMH 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 EHleVFATVLGLSKSHAAVTITRLADALQLQDQ---LKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:PRK10418 100 TH--ARETCLALGKPADDATLTAALEAVGLENAarvLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQA 177
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958662872 1420 QIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK10418 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1271-1465 |
1.81e-14 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 76.99 E-value: 1.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1271 TRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD---ALGFLGYCPQENALWPNLTVKEHLEV 1347
Cdd:PRK11000 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDvppAERGVGMVFQSYALYPHLSVAENMSF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1348 FATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRA 1427
Cdd:PRK11000 99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958662872 1428 IIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:PRK11000 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
464-613 |
1.88e-14 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 74.88 E-value: 1.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSvPTKGSVTIYNNRLSEMaDLESVFRISGVCPQSNVQFDFLTVREN 543
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDW-SAAELARHRAYLSQQQSPPFAMPVFQY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 544 LRLFAkirgvPPQEVEKEVQRVLLEL-EMKNIQDILARN---LSGG--QKRKLtfgTAIL--------GDSQIFLLDEPT 609
Cdd:COG4138 90 LALHQ-----PAGASSEAVEQLLAQLaEALGLEDKLSRPltqLSGGewQRVRL---AAVLlqvwptinPEGQLLLLDEPM 161
|
....
gi 1958662872 610 AGLD 613
Cdd:COG4138 162 NSLD 165
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1272-1441 |
1.98e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 72.10 E-value: 1.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREgdalgfLGYCPQenalwpnltvkehlevfatv 1351
Cdd:cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVK------IGYFEQ-------------------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1352 lglskshaavtitrladalqlqdqlkspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAiraiIKN 1431
Cdd:cd03221 71 -------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA----LKE 115
|
170
....*....|
gi 1958662872 1432 TDRGALLTTH 1441
Cdd:cd03221 116 YPGTVILVSH 125
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1270-1461 |
2.10e-14 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 74.53 E-value: 2.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-----------REGDALgflgyCPQENALWPN 1338
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKditdwqtakimREAVAI-----VPEGRRVFSR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKEHLEV---FAtvlglSKSHAAVTITRLADAL-QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLD 1414
Cdd:PRK11614 95 MTVEENLAMggfFA-----ERDQFQERIKWVYELFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 1415 PEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK11614 170 PIIIQQIFDTIEQ-LREQGMTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1272-1448 |
2.26e-14 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 73.67 E-value: 2.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTK---STAGQVLLKGsREGDALGF----LGYCPQENALWPNLTVKEH 1344
Cdd:COG4136 18 APLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSpafSASGEVLLNG-RRLTALPAeqrrIGILFQDDLLFPHLSVGEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LeVFATVLGLSKS--HAAVtitrlADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:COG4136 97 L-AFALPPTIGRAqrRARV-----EQALEeagLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALRA 170
|
170 180 190
....*....|....*....|....*....|.
gi 1958662872 1420 QIWQAIRAIIKntDRG--ALLTTHYMAEAEA 1448
Cdd:COG4136 171 QFREFVFEQIR--QRGipALLVTHDEEDAPA 199
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
447-613 |
2.76e-14 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 74.33 E-value: 2.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGKPskIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSV--PTKGSVTIYNNRLSEM-AD---LES 520
Cdd:COG0396 3 IKNLHVSVEGKE--I--LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGEDILELsPDeraRAG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 VF-------RISGVcpqSNVQFdfltvrenLRLFA-KIRG--VPPQEVEKEVQRVLLELEMKniQDILARNL----SGGQ 586
Cdd:COG0396 79 IFlafqypvEIPGV---SVSNF--------LRTALnARRGeeLSAREFLKLLKEKMKELGLD--EDFLDRYVnegfSGGE 145
|
170 180
....*....|....*....|....*..
gi 1958662872 587 KRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:COG0396 146 KKRNEILQMLLLEPKLAILDETDSGLD 172
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1276-1441 |
2.78e-14 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 73.73 E-value: 2.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1276 FCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG--SREGDALGFLGYCPQENALWPNLTVKEHLEVfatVLG 1353
Cdd:PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGktATRGDRSRFMAYLGHLPGLKADLSTLENLHF---LCG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1354 LSKSHA------AVTITRLADalqLQDQLkspVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRA 1427
Cdd:PRK13543 109 LHGRRAkqmpgsALAIVGLAG---YEDTL---VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182
|
170
....*....|....
gi 1958662872 1428 IIKnTDRGALLTTH 1441
Cdd:PRK13543 183 HLR-GGGAALVTTH 195
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1270-1470 |
3.34e-14 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 77.59 E-value: 3.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKS-TSLKMI-----SGDTKSTAGQVLLKGSREGDALGF-------------LGYCP 1330
Cdd:PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSvTALALMrlleqAGGLVQCDKMLLRRRSRQVIELSEqsaaqmrhvrgadMAMIF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1331 QE--NALWPNLTVKEHL-EVFATVLGLSKSHAAVTITRLADALQL---QDQLKSPVKTLSEGVKRKLCFVLSILGNPSIL 1404
Cdd:PRK10261 111 QEpmTSLNPVFTVGEQIaESIRLHQGASREEAMVEAKRMLDQVRIpeaQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1405 LLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:PRK10261 191 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1278-1443 |
3.88e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 77.54 E-value: 3.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVL--LKGSregdalgflgYCPQENALWPNLTVKEHLEVFATVLGLS 1355
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDpeLKIS----------YKPQYIKPDYDGTVEDLLRSITDDLGSS 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1356 kshaaVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRG 1435
Cdd:PRK13409 432 -----YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREAT 506
|
170
....*....|
gi 1958662872 1436 ALLTTH--YM 1443
Cdd:PRK13409 507 ALVVDHdiYM 516
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1243-1456 |
4.02e-14 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 77.33 E-value: 4.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1243 PVIVASCLRKEYAGKWKhclskkkakiATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS--REG 1320
Cdd:TIGR02857 320 SSLEFSGVSVAYPGRRP----------ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVplADA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1321 DALGF---LGYCPQENALWPNlTVKEHLEVFATVLGLSKSHAAVTITRLADALQ-LQDQLKSPV----KTLSEGVKRKLC 1392
Cdd:TIGR02857 390 DADSWrdqIAWVPQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAaLPQGLDTPIgeggAGLSGGQAQRLA 468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1393 FVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNtdRGALLTTHYMAEAEaLCDRVAIL 1456
Cdd:TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQG--RTVLLVTHRLALAA-LADRIVVL 529
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1273-1479 |
4.10e-14 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 73.90 E-value: 4.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMI-------SGdTKSTAGQVLLKGSREGDALGFL-----GYCPQENALWPNLT 1340
Cdd:PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLnllemprSG-TLNIAGNHFDFSKTPSDKAIRElrrnvGMVFQQYNLWPHLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHL-EVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:PRK11124 99 VQQNLiEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1420 QIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLK----SKFgKDYL 1479
Cdd:PRK11124 179 QIVSIIRE-LAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTqpqtEAF-KNYL 240
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
445-664 |
5.41e-14 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 73.89 E-value: 5.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGS---VTIYNNRLSEMADLESV 521
Cdd:PRK09984 5 IRVEKLAKTFNQH----QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAgshIELLGRTVQREGRLARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRIS----GVCPQsnvQFDF---LTVRENLrLFAKIRGVP---------PQEVEKEVQRVLLELEMKNIQDILARNLSGG 585
Cdd:PRK09984 81 IRKSrantGYIFQ---QFNLvnrLSVLENV-LIGALGSTPfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 586 QKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRV-VLFSTQFMDEADILADRKVFISRGKLKCAGS 663
Cdd:PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDiNQNDGItVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
.
gi 1958662872 664 S 664
Cdd:PRK09984 237 S 237
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
1272-1466 |
5.61e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 72.17 E-value: 5.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTKSTAGQVLLKG-----------SREGDALGFlgycpQENALWPN 1338
Cdd:cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGhpKYEVTEGEILFKGeditdlppeerARLGIFLAF-----QYPPEIPG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKEHL-EVFAtvlGLSkshaavtitrladalqlqdqlkspvktlseGVKRKLCFVLSILG-NPSILLLDEPSTGLDPE 1416
Cdd:cd03217 92 VKNADFLrYVNE---GFS------------------------------GGEKKRNEILQLLLlEPDLAILDEPDSGLDID 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1417 GQQQIWQAIRAiIKNTDRGALLTTHYMAEAEAL-CDRVAILVSGRLRCIGS 1466
Cdd:cd03217 139 ALRLVAEVINK-LREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGD 188
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
445-677 |
5.64e-14 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 77.07 E-value: 5.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMaDLESVFRI 524
Cdd:TIGR00958 479 IEFQDVSFSYPNRPDV-PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY-DHHYLHRQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDfLTVRENLRLfaKIRGVPPQEVEKEVQRVLLE---LEMKNIQDIL----ARNLSGGQKRKLTFGTAIL 597
Cdd:TIGR00958 557 VALVGQEPVLFS-GSVRENIAY--GLTDTPDEEIMAAAKAANAHdfiMEFPNGYDTEvgekGSQLSGGQKQRIAIARALV 633
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 598 GDSQIFLLDEPTAGLDPFSRHRVWNLLKerKADRVVLFSTQFMDEADiLADRKVFISRGKLKCAGSSLFLKKKWGVGYHL 677
Cdd:TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRS--RASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
437-638 |
6.82e-14 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 76.62 E-value: 6.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 437 PEFHgkesIRIRNISkeYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtiynnRLSEMA 516
Cdd:TIGR01842 313 PEGH----LSVENVT--IVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-----RLDGAD 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 ----DLESVFRISGVCPQsNVQFDFLTVRENLRLFAkiRGVPPQEVEK-----EVQRVLLELEMKNIQDILAR--NLSGG 585
Cdd:TIGR01842 382 lkqwDRETFGKHIGYLPQ-DVELFPGTVAENIARFG--ENADPEKIIEaaklaGVHELILRLPDGYDTVIGPGgaTLSGG 458
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 586 QKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQ 638
Cdd:TIGR01842 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGItVVVITH 512
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
445-613 |
1.06e-13 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 72.21 E-value: 1.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVF-- 522
Cdd:PRK10908 2 IRFEHVSKAYLGGR---QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFlr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQI 602
Cdd:PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158
|
170
....*....|.
gi 1958662872 603 FLLDEPTAGLD 613
Cdd:PRK10908 159 LLADEPTGNLD 169
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
463-653 |
1.12e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.99 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 463 ALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRIsgvcPQSN-VQFDFLTVR 541
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV----PQSEeVDWSFPVLV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 542 ENLRLFAKI--RGVPPQEVEKEVQRVLLELEMKNIQDILARN---LSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFS 616
Cdd:PRK15056 98 EDVVMMGRYghMGWLRRAKKRDRQIVTAALARVDMVEFRHRQigeLSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958662872 617 RHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFI 653
Cdd:PRK15056 178 EARIISLLRElRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
1272-1466 |
1.52e-13 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 75.59 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTksTAGQVLLKG------SREgDALGFLGYCPQENALWpNLTVKE 1343
Cdd:COG1132 357 KDISLTIPPGETVALVGPSGSGKSTLVNLLLRfyDP--TSGRILIDGvdirdlTLE-SLRRQIGVVPQDTFLF-SGTIRE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HL----------EVFAtvlglskshAAvtitRLADA----LQLQDQLKSPV----KTLSEGVKRKLCFVLSILGNPSILL 1405
Cdd:COG1132 433 NIrygrpdatdeEVEE---------AA----KAAQAhefiEALPDGYDTVVgergVNLSGGQRQRIAIARALLKDPPILI 499
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAEAlCDRVAILVSGRLRCIGS 1466
Cdd:COG1132 500 LDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGT 557
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1262-1479 |
1.89e-13 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 74.30 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG--------------SREGDALGFlg 1327
Cdd:PRK10070 35 LEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGvdiakisdaelrevRRKKIAMVF-- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1328 ycpQENALWPNLTVkehLEVFATVLGLSKSHAAVTITRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSIL 1404
Cdd:PRK10070 113 ---QSFALMPHMTV---LDNTAFGMELAGINAEERREKALDALRqvgLENYAHSYPDELSGGMRQRVGLARALAINPDIL 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1405 LLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYL 1479
Cdd:PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1272-1461 |
2.12e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 74.65 E-value: 2.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS---------------------REGDALgFLGYCP 1330
Cdd:PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHevvtrspqdglangivyisedRKRDGL-VLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1331 QENAlwpNLTVKEHLEVFATVLGLSKSHAAVTitrlaDALQL-------QDQlksPVKTLSEGVKRKLCFVLSILGNPSI 1403
Cdd:PRK10762 348 KENM---SLTALRYFSRAGGSLKHADEQQAVS-----DFIRLfniktpsMEQ---AIGLLSGGNQQKVAIARGLMTRPKV 416
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1404 LLLDEPSTGLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK10762 417 LILDEPTRGVDVGAKKEIYQLINQ-FKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
1262-1414 |
2.14e-13 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 71.80 E-value: 2.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKKKAKIATR--NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTkSTAGQVLLKGSREGDALG-----FLGYCPQENA 1334
Cdd:COG4138 1 LQLNDVAVAGRlgPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAaelarHRAYLSQQQS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1335 LWPNLTVKEHLEVFATvLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSIL-----GNPS--ILLLD 1407
Cdd:COG4138 80 PPFAMPVFQYLALHQP-AGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptINPEgqLLLLD 158
|
....*..
gi 1958662872 1408 EPSTGLD 1414
Cdd:COG4138 159 EPMNSLD 165
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1273-1459 |
2.14e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 71.68 E-value: 2.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREgdalgfLGYCPQENALWPN--LTVKEHLEVFAt 1350
Cdd:PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLR------IGYVPQKLYLDTTlpLTVNRFLRLRP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1351 vlGLSKSHAAVTITRladaLQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIK 1430
Cdd:PRK09544 95 --GTKKEDILPALKR----VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR 168
|
170 180 190
....*....|....*....|....*....|....
gi 1958662872 1431 NTDRGALLTTH----YMAEA-EALCDRVAILVSG 1459
Cdd:PRK09544 169 ELDCAVLMVSHdlhlVMAKTdEVLCLNHHICCSG 202
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1262-1432 |
2.63e-13 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 71.10 E-value: 2.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGF------LGYCPQENAL 1335
Cdd:cd03254 10 FSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG-IDIRDISRkslrsmIGVVLQDTFL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 WPNlTVKEHLEVF---AT---VLGLSKS-HAAVTITRLADALQlqDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDE 1408
Cdd:cd03254 89 FSG-TIMENIRLGrpnATdeeVIEAAKEaGAHDFIMKLPNGYD--TVLGENGGNLSQGERQLLAIARAMLRDPKILILDE 165
|
170 180
....*....|....*....|....
gi 1958662872 1409 PSTGLDPEGQQQIWQAIRAIIKNT 1432
Cdd:cd03254 166 ATSNIDTETEKLIQEALEKLMKGR 189
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1272-1461 |
4.45e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 73.52 E-value: 4.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-------SREGDALGfLGYCPQE---NALWPNLTV 1341
Cdd:COG3845 275 KDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGeditglsPRERRRLG-VAYIPEDrlgRGLVPDMSV 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KEHLevfatVLGLSKSHAAVT--------ITRLADAL------QLQDqLKSPVKTLSEGVKRKlcFVLS--ILGNPSILL 1405
Cdd:COG3845 354 AENL-----ILGRYRRPPFSRggfldrkaIRAFAEELieefdvRTPG-PDTPARSLSGGNQQK--VILAreLSRDPKLLI 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIiknTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG3845 426 AAQPTRGLDVGAIEFIHQRLLEL---RDAGAavLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
445-635 |
4.68e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 73.84 E-value: 4.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSkieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAdLESVFRI 524
Cdd:PRK13657 335 VEFDDVSFSYDNSRQ---GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT-RASLRRN 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDfLTVRENLRLfakirGVP---PQEVEKEVQRV-LLELEMKNIQ--DILA----RNLSGGQKRKLTFGT 594
Cdd:PRK13657 411 IAVVFQDAGLFN-RSIEDNIRV-----GRPdatDEEMRAAAERAqAHDFIERKPDgyDTVVgergRQLSGGERQRLAIAR 484
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 595 AILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-----------------RKADRVVLF 635
Cdd:PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDElmkgrttfiiahrlstvRNADRILVF 542
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
1270-1497 |
4.74e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 71.58 E-value: 4.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVL---------LKGSREGDAL----GFLGYCPqENALW 1336
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIvgdyaipanLKKIKEVKRLrkeiGLVFQFP-EYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNlTVKEHLEVFATVLGLSKSHAAVTITRLADALQL-QDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:PRK13645 105 QE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1416 EGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSI------QHLKSKFGKD----YLLEMKVK 1485
Cdd:PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPfeifsnQELLTKIEIDppklYQLMYKLK 263
|
250
....*....|..
gi 1958662872 1486 TlEQVELLNTEV 1497
Cdd:PRK13645 264 N-KGIDLLNKNI 274
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1267-1470 |
5.43e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 71.20 E-value: 5.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregdALgflgycpQENALWpnlTVKEHLE 1346
Cdd:PRK13635 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM----VL-------SEETVW---DVRRQVG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 -VF---------ATV-----LGLSKSHAAVT--ITRLADALQL---QDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLL 1406
Cdd:PRK13635 85 mVFqnpdnqfvgATVqddvaFGLENIGVPREemVERVDQALRQvgmEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIIL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1407 DEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAeALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:PRK13635 165 DEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
463-614 |
5.51e-13 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 70.79 E-value: 5.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 463 ALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADlESVFRISGVCPQSNVQ-FDFLTVR 541
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG-HQIARMGVVRTFQHVRlFREMTVI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 542 ENL----------RLFAKIRGVPP-QEVEKE-VQRVLLELEMKNIQDILAR---NLSGGQKRKLTFGTAILGDSQIFLLD 606
Cdd:PRK11300 99 ENLlvaqhqqlktGLFSGLLKTPAfRRAESEaLDRAATWLERVGLLEHANRqagNLAYGQQRRLEIARCMVTQPEILMLD 178
|
....*...
gi 1958662872 607 EPTAGLDP 614
Cdd:PRK11300 179 EPAAGLNP 186
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1272-1441 |
5.60e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 69.59 E-value: 5.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-SREGDALGF---LGYCPQENALWPNLTVKEHlev 1347
Cdd:PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERqSIKKDLCTYqkqLCFVGHRSGINPYLTLREN--- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1348 faTVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRA 1427
Cdd:PRK13540 95 --CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172
|
170
....*....|....*
gi 1958662872 1428 iiKNTDRGA-LLTTH 1441
Cdd:PRK13540 173 --HRAKGGAvLLTSH 185
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1270-1461 |
5.89e-13 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 69.90 E-value: 5.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SR-EGDALGFL----GYCPQENALWPNLTV 1341
Cdd:PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGhdiTRlKNREVPFLrrqiGMIFQDHHLLMDRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEgqqqI 1421
Cdd:PRK10908 97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA----L 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 1422 WQAIRAIIKNTDR---GALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK10908 173 SEGILRLFEEFNRvgvTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
465-626 |
6.17e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 70.79 E-value: 6.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 465 KDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRIsGVCPQSNVQFDFLTVRE-- 542
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI-GLLAQNATTPGDITVQElv 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 543 ------NLRLFAKIRgvppQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFS 616
Cdd:PRK10253 103 argrypHQPLFTRWR----KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178
|
170
....*....|
gi 1958662872 617 RHRVWNLLKE 626
Cdd:PRK10253 179 QIDLLELLSE 188
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1243-1506 |
6.53e-13 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 70.87 E-value: 6.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1243 PVIVASCLRKEYAGKwkHCLSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG------ 1316
Cdd:PRK10419 2 TLLNVSGLSHHYAHG--GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGeplakl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1317 SREG-------------DALGflgycpqenALWPNLTVKEHL-EVFATVLGLSKSHAAVTITRLADALQLQDQL--KSPv 1380
Cdd:PRK10419 80 NRAQrkafrrdiqmvfqDSIS---------AVNPRKTVREIIrEPLRHLLSLDKAERLARASEMLRAVDLDDSVldKRP- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1381 KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1461 L---RCIGSIQHLKSKFGKdyllemkvktleqveLLNTEVLRLFPQAAR 1506
Cdd:PRK10419 230 IvetQPVGDKLTFSSPAGR---------------VLQNAVLPAFPVRRR 263
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1270-1470 |
6.72e-13 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 70.81 E-value: 6.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLK----MISGDtKSTAGQVLLKG---SREGDALGFL-------GYCPQENAL 1335
Cdd:PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRhlsgLITGD-KSAGSHIELLGrtvQREGRLARDIrksrantGYIFQQFNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 WPNLTVKEHLEVFAtvLG--------------LSKSHAAVTITRLADALQLQDQlkspVKTLSEGVKRKLCFVLSILGNP 1401
Cdd:PRK09984 98 VNRLSVLENVLIGA--LGstpfwrtcfswftrEQKQRALQALTRVGMVHFAHQR----VSTLSGGQQQRVAIARALMQQA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1402 SILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:PRK09984 172 KVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
437-659 |
7.62e-13 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 69.36 E-value: 7.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 437 PEfHGkeSIRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMa 516
Cdd:cd03369 2 PE-HG--EIEVENLSVRYA--PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 DLESVFRISGVCPQSNVQFDFlTVRENLRLFAKIRgvppqevEKEVQRVLLELEMKNiqdilarNLSGGQKRKLTFGTAI 596
Cdd:cd03369 76 PLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYS-------DEEIYGALRVSEGGL-------NLSQGQRQLLCLARAL 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 597 LGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL-FSTQFMDEADIlaDRKVFISRGKLK 659
Cdd:cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILtIAHRLRTIIDY--DKILVMDAGEVK 202
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
466-613 |
8.68e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 69.06 E-value: 8.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 466 DLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSV-----TIYNNRLSEMADLESVFRISGVCPQsnvqfdfLTV 540
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVlwqgePIRRQRDEYHQDLLYLGHQPGIKTE-------LTA 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 541 RENLRLFAKIRGVPPQEvekEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PRK13538 92 LENLRFYQRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
1272-1460 |
8.77e-13 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 69.71 E-value: 8.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTK--STAGQVLLKG-----------SREGDALGFlGYcPQEnalWPN 1338
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGedilelspderARAGIFLAF-QY-PVE---IPG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKEHLEVFATVLGLSKSHAAVTITRLADALQL----QDQLKSPV-KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGL 1413
Cdd:COG0396 92 VSVSNFLRTALNARRGEELSAREFLKLLKEKMKElgldEDFLDRYVnEGFSGGEKKRNEILQMLLLEPKLAILDETDSGL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1414 DpegqqqIWqAIRAI------IKNTDRGALLTTHYmaeaEAL-----CDRVAILVSGR 1460
Cdd:COG0396 172 D------ID-ALRIVaegvnkLRSPDRGILIITHY----QRIldyikPDFVHVLVDGR 218
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
462-662 |
8.82e-13 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 70.00 E-value: 8.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 462 EALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLE---SVF----------RISGVC 528
Cdd:PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDgqlKVAdknqlrllrtRLTMVF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 529 PQSNVqFDFLTVREN-LRLFAKIRGVPPQEVEKEVQRVLLELEM-KNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLD 606
Cdd:PRK10619 99 QHFNL-WSHMTVLENvMEAPIQVLGLSKQEARERAVKYLAKVGIdERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 607 EPTAGLDP---FSRHRVWNLLKERKADRVVLfsTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:PRK10619 178 EPTSALDPelvGEVLRIMQQLAEEGKTMVVV--THEMGFARHVSSHVIFLHQGKIEEEG 234
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
1272-1461 |
9.61e-13 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 69.42 E-value: 9.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---------------SREGDALGFLGYCPQENALW 1336
Cdd:cd03248 31 QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGkpisqyehkylhskvSLVGQEPVLFARSLQDNIAY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 pNLTVKEHLEVFATVlglSKSHAAVTITRLADALQLQDQLKSpvKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:cd03248 111 -GLQSCSFECVKEAA---QKAHAHSFISELASGYDTEVGEKG--SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958662872 1417 GQQQIWQAIRAiiKNTDRGALLTTHYMAEAEAlCDRVAILVSGRL 1461
Cdd:cd03248 185 SEQQVQQALYD--WPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1262-1474 |
1.02e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 72.53 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1262 LSKK-KAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTKSTAGQVLL------------KGSREGDALGFL 1326
Cdd:TIGR03269 6 LTKKfDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRIIYhvalcekcgyveRPSKVGEPCPVC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1327 G--YCPQENALW-PNLTVKEHL---------EVFA-----TVL----------GLSKSHAAVTITRLADALQLQDQLKSP 1379
Cdd:TIGR03269 86 GgtLEPEEVDFWnLSDKLRRRIrkriaimlqRTFAlygddTVLdnvlealeeiGYEGKEAVGRAVDLIEMVQLSHRITHI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1380 VKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSG 1459
Cdd:TIGR03269 166 ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245
|
250
....*....|....*
gi 1958662872 1460 RLRCIGSIQHLKSKF 1474
Cdd:TIGR03269 246 EIKEEGTPDEVVAVF 260
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
1231-1441 |
1.15e-12 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 72.39 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1231 ASALASTSFDEKPVIVASCLRKEYAGkwkhclskkkAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAG 1310
Cdd:TIGR02868 321 SAPAAGAVGLGKPTLELRDLSAGYPG----------APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQG 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1311 QVLLKG-----SREGDALGFLGYCPQENALWpNLTVKEHLEVF---ATVLGLSKSHAAVtitRLADALQ-LQDQLKSPV- 1380
Cdd:TIGR02868 391 EVTLDGvpvssLDQDEVRRRVSVCAQDAHLF-DTTVRENLRLArpdATDEELWAALERV---GLADWLRaLPDGLDTVLg 466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1381 ---KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIikNTDRGALLTTH 1441
Cdd:TIGR02868 467 eggARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLITH 528
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
433-658 |
1.28e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 72.37 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 433 EPVSPefhGKESIRIRNISkeYKGkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRL 512
Cdd:COG3845 249 APAEP---GEVVLEVENLS--VRD-DRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDI 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 513 S-----EMADLeSVFRIS------GVCPQsnvqfdfLTVRENLRL-------FAKIRGVPPQEVEKEVQRVLLELEMK-- 572
Cdd:COG3845 323 TglsprERRRL-GVAYIPedrlgrGLVPD-------MSVAENLILgryrrppFSRGGFLDRKAIRAFAEELIEEFDVRtp 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 573 NIqDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWN-LLKERKADRVVLFSTQFMDEADILADRKV 651
Cdd:COG3845 395 GP-DTPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQrLLELRDAGAAVLLISEDLDEILALSDRIA 473
|
....*..
gi 1958662872 652 FISRGKL 658
Cdd:COG3845 474 VMYEGRI 480
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
445-662 |
1.36e-12 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 71.41 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:PRK09536 4 IDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFlTVRENLRL--------FAKIRGVPPQEVEKEVQRVllelEMKNIQDILARNLSGGQKRKLTFGTAI 596
Cdd:PRK09536 80 ASVPQDTSLSFEF-DVRQVVEMgrtphrsrFDTWTETDRAAVERAMERT----GVAQFADRPVTSLSGGERQRVLLARAL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 597 LGDSQIFLLDEPTAGLDpfSRHRVWNL-LKERKAD--RVVLFSTQFMDEADILADRKVFISRGKLKCAG 662
Cdd:PRK09536 155 AQATPVLLLDEPTASLD--INHQVRTLeLVRRLVDdgKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1270-1479 |
1.45e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 70.02 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD---------ALGFLGYCPQENALwpNLT 1340
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDfsklqgirkLVGIVFQNPETQFV--GRT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:PRK13644 95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1421 IWQAIRAiIKNTDRGALLTTHYMAEAEAlCDRVAILVSGRLRCIGSIQHLKSKFGKDYL 1479
Cdd:PRK13644 175 VLERIKK-LHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1272-1460 |
1.53e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 68.06 E-value: 1.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTK---STAGQVLLKG--------SREGDALgflgYCPQENALWPNLT 1340
Cdd:cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEgnvSVEGDIHYNGipykefaeKYPGEII----YVSEEDVHFPTLT 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLEvFAtvlglskshaavtitrladaLQLQ-DQLkspVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:cd03233 100 VRETLD-FA--------------------LRCKgNEF---VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 1420 QIWQAIRAIIKNTdRGALLTTHYMA--EAEALCDRVAILVSGR 1460
Cdd:cd03233 156 EILKCIRTMADVL-KTTTFVSLYQAsdEIYDLFDKVLVLYEGR 197
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1281-1414 |
1.67e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 72.22 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1281 GEILGLLGHNGAGKSTSLKMISGDTKST--AGQVLLKGSR-EGDALGFLGYCPQENALWPNLTVKEHLeVFATVLGLSKS 1357
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKpTKQILKRTGFVTQDDILYPHLTVRETL-VFCSLLRLPKS 172
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1358 HAAVTITRLADALQLQDQL---------KSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLD 1414
Cdd:PLN03211 173 LTKQEKILVAESVISELGLtkcentiigNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1268-1461 |
1.92e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 69.44 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGdtkstagqVLLKGSREGDALGFLGYCPQENALWpnlTVKEHLE- 1346
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLING--------LLLPDDNPNSKITVDGITLTAKTVW---DIREKVGi 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 VF---------ATV-----LGLSKSHAA----VTITR--LADALQLqDQLKSPVKTLSEGVKRKLCfVLSILG-NPSILL 1405
Cdd:PRK13640 89 VFqnpdnqfvgATVgddvaFGLENRAVPrpemIKIVRdvLADVGML-DYIDSEPANLSGGQKQRVA-IAGILAvEPKIII 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEaLCDRVAILVSGRL 1461
Cdd:PRK13640 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKL 221
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1273-1470 |
2.00e-12 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 70.52 E-value: 2.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDA--------LGFLGYcpqenALWPNLTVKEH 1344
Cdd:PRK11432 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRsiqqrdicMVFQSY-----ALFPHMSLGEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1345 LEVFATVLGLSKSHAAvtiTRLADALQLQDQL---KSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQI 1421
Cdd:PRK11432 99 VGYGLKMLGVPKEERK---QRVKEALELVDLAgfeDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1422 WQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:PRK11432 176 REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
445-614 |
2.09e-12 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 69.06 E-value: 2.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYkgkpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYN-------NRLSEM-- 515
Cdd:COG4598 9 LEVRDLHKSF----GDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGeeirlkpDRDGELvp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 516 ADLESVFRIsgvcpQSNVQFDF--------LTVRENLrLFAKIR--GVPPQEVEKEVQRVLLELEMKNIQDILARNLSGG 585
Cdd:COG4598 85 ADRRQLQRI-----RTRLGMVFqsfnlwshMTVLENV-IEAPVHvlGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGG 158
|
170 180
....*....|....*....|....*....
gi 1958662872 586 QKRKLTFGTAILGDSQIFLLDEPTAGLDP 614
Cdd:COG4598 159 QQQRAAIARALAMEPEVMLFDEPTSALDP 187
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
473-634 |
2.17e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 71.76 E-value: 2.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 473 EGQITALLGHSGAGKSTLLNILSGLSVPTKGsvtiynnRLSEMADLESVF-RISGvcpqSNVQFDFLTVRENlrlfaKIR 551
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLG-------DYEEEPSWDEVLkRFRG----TELQNYFKKLYNG-----EIK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 552 GV-PPQEVE---KEVQ---RVLLE--------------LEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTA 610
Cdd:PRK13409 162 VVhKPQYVDlipKVFKgkvRELLKkvdergkldevverLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241
|
170 180
....*....|....*....|....
gi 1958662872 611 GLDPFSRHRVWNLLKERKADRVVL 634
Cdd:PRK13409 242 YLDIRQRLNVARLIRELAEGKYVL 265
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1273-1468 |
3.38e-12 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 69.73 E-value: 3.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREGDALGFLGYCPQENALWPNLTVKEHLEVFA 1349
Cdd:PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGtdvSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1350 TVLGLSK--SHAAVT--ITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAI 1425
Cdd:PRK10851 100 TVLPRRErpNAAAIKakVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 1426 RAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQ 1468
Cdd:PRK10851 180 RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1278-1443 |
4.30e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.97 E-value: 4.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregdalgfLGYCPQENALWPNLTVKEHLEvfatvlglskS 1357
Cdd:COG1245 363 IREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLK--------ISYKPQYISPDYDGTVEEFLR----------S 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1358 HAAVTI------TRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKN 1431
Cdd:COG1245 425 ANTDDFgssyykTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAEN 504
|
170
....*....|....
gi 1958662872 1432 TDRGALLTTH--YM 1443
Cdd:COG1245 505 RGKTAMVVDHdiYL 518
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1272-1461 |
4.50e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 68.02 E-value: 4.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISG-----DTKSTAGQVLLKGS----------REGDALGFlgycpQENALW 1336
Cdd:PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRlielyPEARVSGEVYLDGQdifkmdvielRRRVQMVF-----QIPNPI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLEVFATVLGLSKSHAAVTiTRLADALQ-------LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEP 1409
Cdd:PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQ-ERVRWALEkaqlwdeVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1410 STGLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK14247 174 TANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
1272-1475 |
4.76e-12 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 67.64 E-value: 4.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS--REGDALGF---LGYCPQENALWpNLTVKEHL- 1345
Cdd:cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQdiREVTLDSLrraIGVVPQDTVLF-NDTIGYNIr 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 ---------EVFATVLglsKSHAAVTITRLADALQLQ---DQLKspvktLSEGVKRKLCFVLSILGNPSILLLDEPSTGL 1413
Cdd:cd03253 97 ygrpdatdeEVIEAAK---AAQIHDKIMRFPDGYDTIvgeRGLK-----LSGGEKQRVAIARAILKNPPILLLDEATSAL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1414 DPEGQQQIWQAIRAIIKNtdRGALLTTHYMAEAeALCDRVAILVSGRLRCIGSIQHLKSKFG 1475
Cdd:cd03253 169 DTHTEREIQAALRDVSKG--RTTIVIAHRLSTI-VNADKIIVLKDGRIVERGTHEELLAKGG 227
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
421-613 |
5.07e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 70.52 E-value: 5.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 421 GIDPAPLSGGSfepvspefhgkesIRIRNISKEY-KGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSV 499
Cdd:PRK10790 330 GNDDRPLQSGR-------------IDIDNVSFAYrDDNL----VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 500 PTKGSVTIYNNRLSEMAdlESVFRiSGVcpqSNVQFDFL----TVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKN-I 574
Cdd:PRK10790 393 LTEGEIRLDGRPLSSLS--HSVLR-QGV---AMVQQDPVvladTFLANVTLGRDISEEQVWQALETVQLAELARSLPDgL 466
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958662872 575 QDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PRK10790 467 YTPLGEqgnNLSVGQKQLLALARVLVQTPQILILDEATANID 508
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
1281-1490 |
5.13e-12 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 67.89 E-value: 5.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1281 GEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS--REGDALGF---LGYCPQENALWPNLTVKEHLEVfatvlGLS 1355
Cdd:PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQplESWSSKAFarkVAYLPQQLPAAEGMTVRELVAI-----GRY 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1356 KSHAAVTITRLADALQLQDQLK----SP-----VKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIR 1426
Cdd:PRK10575 112 PWHGALGRFGAADREKVEEAISlvglKPlahrlVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1427 AIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLkskfgkdylleMKVKTLEQV 1490
Cdd:PRK10575 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL-----------MRGETLEQI 244
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1275-1472 |
5.31e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 67.30 E-value: 5.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1275 SFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG--------SREGDALGFlgycpQENALWPNLTVKEHLE 1346
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGqdhtttppSRRPVSMLF-----QENNLFSHLTVAQNIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 vfatvLGLS---KSHAA--VTITRLADALQLQDQLKSPVKTLSEGVKRKL----CFVLSilgNPsILLLDEPSTGLDPEG 1417
Cdd:PRK10771 94 -----LGLNpglKLNAAqrEKLHAIARQMGIEDLLARLPGQLSGGQRQRValarCLVRE---QP-ILLLDEPFSALDPAL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1418 QQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKS 1472
Cdd:PRK10771 165 RQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
464-613 |
7.03e-12 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 67.51 E-value: 7.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtIYNNRLSEMADLESVFRISGVCPQSNVQFDFLTVREn 543
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE- 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 544 lrLFAKIR-------GVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PRK10575 105 --LVAIGRypwhgalGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1252-1462 |
7.75e-12 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 66.73 E-value: 7.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1252 KEYAGKWKHCLSkkkakIATrNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS------REGDAL-- 1323
Cdd:PRK10584 13 KKSVGQGEHELS-----ILT-GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQplhqmdEEARAKlr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1324 -GFLGYCPQENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPS 1402
Cdd:PRK10584 87 aKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1403 ILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAeALCDRVAILVSGRLR 1462
Cdd:PRK10584 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQLQ 225
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
442-634 |
7.78e-12 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 70.05 E-value: 7.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 442 KESIRIRNISKEYKGKpsKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEmadlesv 521
Cdd:PRK11176 339 KGDIEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD------- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRIsgvcpqSNVQFDFLTVRENLRLF----------AKIRGVPPQEVEKeVQRVLLELE----MKNIQD-ILARN---LS 583
Cdd:PRK11176 410 YTL------ASLRNQVALVSQNVHLFndtianniayARTEQYSREQIEE-AARMAYAMDfinkMDNGLDtVIGENgvlLS 482
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 584 GGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVL 634
Cdd:PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
458-649 |
8.82e-12 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 67.05 E-value: 8.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 458 PSKIEALKDLTL-----DIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSemadlesvFRisgvcPQSn 532
Cdd:cd03237 4 PTMKKTLGEFTLeveggSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS--------YK-----PQY- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 533 VQFDF-LTVRENLRLFAKIRGVPPQ-EVEkevqrVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTA 610
Cdd:cd03237 70 IKADYeGTVRDLLSSITKDFYTHPYfKTE-----IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 611 GLDPFSRHRVWNLLKerkadRVVLF--STQFMDEADI-----LADR 649
Cdd:cd03237 145 YLDVEQRLMASKVIR-----RFAENneKTAFVVEHDIimidyLADR 185
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
1274-1414 |
1.02e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 66.88 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGdTKSTAGQVLLKGSregdALGFL---------GYCPQENALWPNLTVKEH 1344
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQ----PLEAWsaaelarhrAYLSQQQTPPFAMPVFQY 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1345 LEVFATVlGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSIL-----GNPS--ILLLDEPSTGLD 1414
Cdd:PRK03695 90 LTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLqvwpdINPAgqLLLLDEPMNSLD 165
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
446-657 |
1.07e-11 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 66.87 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 446 RIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtIYNNRLSEMADL----ESV 521
Cdd:PRK11701 8 SVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV-HYRMRDGQLRDLyalsEAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FRI------------------SGVCPQSNVQFDFLTVREnlRLFAKIRgvppQEVEKEVQRVllELEMKNIQDiLARNLS 583
Cdd:PRK11701 83 RRRllrtewgfvhqhprdglrMQVSAGGNIGERLMAVGA--RHYGDIR----ATAGDWLERV--EIDAARIDD-LPTTFS 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 584 GGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQFMDEADILADRKVFISRGK 657
Cdd:PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlvRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1260-1441 |
1.15e-11 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 66.38 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1260 HCLSKK--KAKIAT---RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---------------SRE 1319
Cdd:PRK11629 9 DNLCKRyqEGSVQTdvlHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGqpmsklssaakaelrNQK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1320 gdalgfLGYCPQENALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILG 1399
Cdd:PRK11629 89 ------LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958662872 1400 NPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTH 1441
Cdd:PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1270-1474 |
1.23e-11 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 67.22 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDAL--GFLGYCPQ-ENALWPNLTVKEHLE 1346
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALqkNLVAYVPQsEEVDWSFPVLVEDVV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 VFAT-----VLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQI 1421
Cdd:PRK15056 102 MMGRyghmgWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1422 WQAIRAiIKNTDRGALLTTHYMAEAEALCD-----RVAILVSGRLRCIGSIQHLKSKF 1474
Cdd:PRK15056 182 ISLLRE-LRDEGKTMLVSTHNLGSVTEFCDytvmvKGTVLASGPTETTFTAENLELAF 238
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1250-1416 |
1.34e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 69.19 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1250 LRKEYAGKwKHCLskkkakiatRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsregdALGF-LGY 1328
Cdd:TIGR03719 10 VSKVVPPK-KEIL---------KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARP-------QPGIkVGY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1329 CPQENALWPNLTVKEHLEvfatvLGLSKSHAAV-----------------------------------------TITRLA 1367
Cdd:TIGR03719 73 LPQEPQLDPTKTVRENVE-----EGVAEIKDALdrfneisakyaepdadfdklaaeqaelqeiidaadawdldsQLEIAM 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1368 DALQLQDQlKSPVKTLSEGVKRK--LCFVLsiLGNPSILLLDEPSTGLDPE 1416
Cdd:TIGR03719 148 DALRCPPW-DADVTKLSGGERRRvaLCRLL--LSKPDMLLLDEPTNHLDAE 195
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1272-1476 |
1.43e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 69.75 E-value: 1.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDT----KSTAGQVLLKGSREGDAL----GFLGYCPQENALWPNLTVKE 1343
Cdd:TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITYDGITPEEIKkhyrGDVVYNAETDVHFPHLTVGE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLEVFAT-------VLGLSKSHAAVTITRLADALQLQDQLKSP------VKTLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:TIGR00956 158 TLDFAARcktpqnrPDGVSREEYAKHIADVYMATYGLSHTRNTkvgndfVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKNTDRGALLTThYMAEAEA--LCDRVAILVSGRLRCIGSIQHLKSKFGK 1476
Cdd:TIGR00956 238 RGLDSATALEFIRALKTSANILDTTPLVAI-YQCSQDAyeLFDKVIVLYEGYQIYFGPADKAKQYFEK 304
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1274-1469 |
1.46e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 68.78 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR-----EGDAL--GFLgYCP--------------QE 1332
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPidirsPRDAIraGIM-LCPedrkaegiipvhsvAD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 NAlwpNLTVKEHLEVFATVL--GLSKSHAAVTITRLADALQLQDQlksPVKTLSEGVKRKlcfvlSILG-----NPSILL 1405
Cdd:PRK11288 351 NI---NISARRHHLRAGCLInnRWEAENADRFIRSLNIKTPSREQ---LIMNLSGGNQQK-----AILGrwlseDMKVIL 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIIKnTDRGALLTTHYMAEAEALCDRVAILVSGRLRciGSIQH 1469
Cdd:PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIA--GELAR 480
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
467-613 |
1.81e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 66.11 E-value: 1.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 467 LTLDIYEGQITALLGHSGAGKSTLLNILSGLSvPTKGSVTIYNNRLSEMADLESVFRISGVCPQSNVQFDfLTVRENLRL 546
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFA-MPVFQYLTL 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 547 FakirgVPPQEVEKEVQRVLLEL-EMKNIQDILARN---LSGGQKRKLTFGTAILG-------DSQIFLLDEPTAGLD 613
Cdd:PRK03695 93 H-----QPDKTRTEAVASALNEVaEALGLDDKLGRSvnqLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNSLD 165
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
473-626 |
1.90e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 68.66 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 473 EGQITALLGHSGAGKSTLLNILSGLSVPTKGsvtiynnRLSEMADLESVF-RISGvcpqSNVQFDFLTVRENlrlfaKIR 551
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLG-------DYDEEPSWDEVLkRFRG----TELQDYFKKLANG-----EIK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 552 GV-PPQEVEKeVQRV-------LLE--------------LEMKNI--QDIlaRNLSGGQKRKLTFGTAILGDSQIFLLDE 607
Cdd:COG1245 162 VAhKPQYVDL-IPKVfkgtvreLLEkvdergkldelaekLGLENIldRDI--SELSGGELQRVAIAAALLRDADFYFFDE 238
|
170
....*....|....*....
gi 1958662872 608 PTAGLDPFSRHRVWNLLKE 626
Cdd:COG1245 239 PSSYLDIYQRLNVARLIRE 257
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1285-1416 |
1.96e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 68.61 E-value: 1.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1285 GLLGHNGAGKSTSLKMISG-DTKSTAGQVLLKGSRegdalgfLGYCPQENALWPNLTVKEHLEvfatvLGLSKSHAAVti 1363
Cdd:PRK11819 37 GVLGLNGAGKSTLLRIMAGvDKEFEGEARPAPGIK-------VGYLPQEPQLDPEKTVRENVE-----EGVAEVKAAL-- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1364 TRL-------------ADAL-----QLQDQLKS------------------------PVKTLSEGVKRK--LCFVLsiLG 1399
Cdd:PRK11819 103 DRFneiyaayaepdadFDALaaeqgELQEIIDAadawdldsqleiamdalrcppwdaKVTKLSGGERRRvaLCRLL--LE 180
|
170
....*....|....*..
gi 1958662872 1400 NPSILLLDEPSTGLDPE 1416
Cdd:PRK11819 181 KPDMLLLDEPTNHLDAE 197
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1283-1472 |
2.58e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 66.27 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1283 ILGLLGHNGAGKSTSLKMIS--GDTKST---AGQVLLKGS---REGDALGF---LGYCPQENALWPnltvkehLEVFATV 1351
Cdd:PRK14271 49 VTSLMGPTGSGKTTFLRTLNrmNDKVSGyrySGDVLLGGRsifNYRDVLEFrrrVGMLFQRPNPFP-------MSIMDNV 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1352 LGLSKSH-------------AAVTITRLADAlqLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQ 1418
Cdd:PRK14271 122 LAGVRAHklvprkefrgvaqARLTEVGLWDA--VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1419 QQIWQAIRAIiknTDR-GALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKS 1472
Cdd:PRK14271 200 EKIEEFIRSL---ADRlTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
474-620 |
2.63e-11 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 68.37 E-value: 2.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 474 GQITALLGHSGAGKSTLLNILSGL--SVPTKGSVTIYNNRLSEmadleSVFRISGVCPQSNVQFDFLTVRENLRLFAKIR 551
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRiqGNNFTGTILANNRKPTK-----QILKRTGFVTQDDILYPHLTVRETLVFCSLLR 168
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 552 ---GVPPQEVEKEVQRVLLEL-----EMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRV 620
Cdd:PLN03211 169 lpkSLTKQEKILVAESVISELgltkcENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRL 245
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
464-648 |
3.36e-11 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 65.62 E-value: 3.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSG--------LSVPTKGSVTIYNNRLSEMaDLESVFRISGVCPQ-SNVQ 534
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdltgggapRGARVTGDVTLNGEPLAAI-DAPRLARLRAVLPQaAQPA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 535 FDFlTVRENLRL----FAKIRGVPPQEVEKEVQRVlleLEMKNIQDILARN---LSGGQKRKLTFGTAI---------LG 598
Cdd:PRK13547 96 FAF-SAREIVLLgrypHARRAGALTHRDGEIAWQA---LALAGATALVGRDvttLSGGELARVQFARVLaqlwpphdaAQ 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 599 DSQIFLLDEPTAGLDPFSRHRV----------WNL----------LKERKADRVVLFStqfmdEADILAD 648
Cdd:PRK13547 172 PPRYLLLDEPTAALDLAHQHRLldtvrrlardWNLgvlaivhdpnLAARHADRIAMLA-----DGAIVAH 236
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
434-669 |
3.42e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 68.46 E-value: 3.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 434 PVSPefhGKESIRIRNISKEYKGKPSKiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGlsvptkgsvtiynnRLS 513
Cdd:PLN03232 607 PLQP---GAPAISIKNGYFSWDSKTSK-PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELS 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 514 EMADLESVFRIS-GVCPQSNVQFDfLTVRENLRLFAKIRgvpPQEVEKEVQRVLLELEM-----KNIQDILAR--NLSGG 585
Cdd:PLN03232 669 HAETSSVVIRGSvAYVPQVSWIFN-ATVRENILFGSDFE---SERYWRAIDVTALQHDLdllpgRDLTEIGERgvNISGG 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 586 QKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWN--LLKERKADRVVLFSTQ--FMDeadiLADRKVFISRGKLKCA 661
Cdd:PLN03232 745 QKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDscMKDELKGKTRVLVTNQlhFLP----LMDRIILVSEGMIKEE 820
|
....*...
gi 1958662872 662 GSSLFLKK 669
Cdd:PLN03232 821 GTFAELSK 828
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1274-1461 |
3.48e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 65.88 E-value: 3.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREG--------DALGFLGYCPQENALwpNLTVKEHL 1345
Cdd:PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTaenvwnlrRKIGMVFQNPDNQFV--GATVEDDV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 EVFATVLGLSKSHaavTITRLADAL----QLQDQLKSPVKtLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQI 1421
Cdd:PRK13642 104 AFGMENQGIPREE---MIKRVDEALlavnMLDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958662872 1422 WQAIRAIIKNTDRGALLTTHYMAEAeALCDRVAILVSGRL 1461
Cdd:PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEI 218
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1272-1461 |
3.61e-11 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 65.38 E-value: 3.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-----REGDAL-------------GFLGYCPQEN 1333
Cdd:PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQtinlvRDKDGQlkvadknqlrllrTRLTMVFQHF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1334 ALWPNLTVKEH-LEVFATVLGLSKSHAAVTITRLADALQLQD--QLKSPVKtLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:PRK10619 102 NLWSHMTVLENvMEAPIQVLGLSKQEARERAVKYLAKVGIDEraQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPT 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1411 TGLDPEgqqQIWQAIRAIIKNTDRGA--LLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK10619 181 SALDPE---LVGEVLRIMQQLAEEGKtmVVVTHEMGFARHVSSHVIFLHQGKI 230
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1267-1501 |
3.79e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 65.91 E-value: 3.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQV------LLKGSREGD------ALGFLGYCPqENA 1334
Cdd:PRK13643 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVtvgdivVSSTSKQKEikpvrkKVGVVFQFP-ESQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1335 LWPNLTVKEhLEVFATVLGLSKSHAAVTITRLADALQLQDQL--KSPVKtLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:PRK13643 97 LFEETVLKD-VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFweKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1413 LDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL---------------KSKFGKD 1477
Cdd:PRK13643 175 LDPKARIEMMQLFES-IHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVfqevdflkahelgvpKATHFAD 253
|
250 260
....*....|....*....|....
gi 1958662872 1478 YLLEMKVKTLEQVELLNTEVLRLF 1501
Cdd:PRK13643 254 QLQKTGAVTFEKLPITRAELVTLL 277
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
445-613 |
3.89e-11 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 65.14 E-value: 3.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtiynnrlsemaDLESVFRI 524
Cdd:PRK09544 5 VSLENVSVSFGQR----RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKLRI 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 sGVCPQsNVQFDF---LTVRENLRLFAkirGVPPQEVEKEVQRV----LLELEMKniqdilarNLSGGQKRKLTFGTAIL 597
Cdd:PRK09544 70 -GYVPQ-KLYLDTtlpLTVNRFLRLRP---GTKKEDILPALKRVqaghLIDAPMQ--------KLSGGETQRVLLARALL 136
|
170
....*....|....*.
gi 1958662872 598 GDSQIFLLDEPTAGLD 613
Cdd:PRK09544 137 NRPQLLVLDEPTQGVD 152
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
464-634 |
3.92e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 67.92 E-value: 3.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAdLESVFRISGVCPQSNVQF-DflTVRE 542
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVT-QASLRAAIGIVPQDTVLFnD--TIAY 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 543 NLRlFAKirgvpPQEVEKEVQRVlleLEMKNIQDILAR--------------NLSGGQKRKLTFGTAILGDSQIFLLDEP 608
Cdd:COG5265 451 NIA-YGR-----PDASEEEVEAA---ARAAQIHDFIESlpdgydtrvgerglKLSGGEKQRVAIARTLLKNPPILIFDEA 521
|
170 180
....*....|....*....|....*.
gi 1958662872 609 TAGLDPFSRHRVWNLLKERKADRVVL 634
Cdd:COG5265 522 TSALDSRTERAIQAALREVARGRTTL 547
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
1265-1480 |
4.37e-11 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 64.56 E-value: 4.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1265 KKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD-ALGFL----GYCPQENALWpNL 1339
Cdd:cd03251 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLrrqiGLVSQDVFLF-ND 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLeVFATvlgLSKSHAAV-TITRLADALQLQDQLKSPVKT--------LSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:cd03251 91 TVAENI-AYGR---PGATREEVeEAARAANAHEFIMELPEGYDTvigergvkLSGGQRQRIAIARALLKDPPILILDEAT 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKNtdRGALLTTHYMAEAEAlCDRVAILVSGRLRCIGSIQHLKSKFGKDYLL 1480
Cdd:cd03251 167 SALDTESERLVQAALERLMKN--RTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1268-1478 |
4.74e-11 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 65.11 E-value: 4.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGFLGYCPQENALWPNLTVKEHLEV 1347
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1348 FATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRA 1427
Cdd:PRK11248 94 GLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1428 IIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCigsIQHLKSKFGKDY 1478
Cdd:PRK11248 174 LWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRV---VERLPLNFARRF 221
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1272-1460 |
4.87e-11 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 64.63 E-value: 4.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsrEGDALGF-----------LGYCPQENALWPNLT 1340
Cdd:COG1126 18 KGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITV----DGEDLTDskkdinklrrkVGMVFQQFNLFPHLT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLeVFA--TVLGLSKSHAavtiTRLADAL----QLQDQLKSPVKTLSEGVK------RKLCFvlsilgNPSILLLDE 1408
Cdd:COG1126 94 VLENV-TLApiKVKKMSKAEA----EERAMELlervGLADKADAYPAQLSGGQQqrvaiaRALAM------EPKVMLFDE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1409 PSTGLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:COG1126 163 PTSALDPELVGEVLDVMRD-LAKEGMTMVVVTHEMGFAREVADRVVFMDGGR 213
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1283-1466 |
5.10e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 65.03 E-value: 5.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1283 ILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREG-----DALGFLGYCPQENALWPNltVKEHLEVFATVL 1352
Cdd:PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpldySKRGllalrQQVATVFQDPEQQIFYTD--IDSDIAFSLRNL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1353 GLSKSHAAvtiTRLADALQLQDQL---KSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAII 1429
Cdd:PRK13638 107 GVPEAEIT---RRVDEALTLVDAQhfrHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958662872 1430 KNTDRgALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:PRK13638 184 AQGNH-VIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1272-1461 |
5.71e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 67.00 E-value: 5.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsREGDALGF-------LGYCP---QENAL------ 1335
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNG-KEINALSTaqrlargLVYLPedrQSSGLyldapl 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 -WPNLTVKEHLEVFATVLG-----LSKSHAAVTItRLADALQlqdqlksPVKTLSEGVKRKLCFVLSILGNPSILLLDEP 1409
Cdd:PRK15439 359 aWNVCALTHNRRGFWIKPArenavLERYRRALNI-KFNHAEQ-------AARTLSGGNQQKVLIAKCLEASPQLLIVDEP 430
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1410 STGLDPEGQQQIWQAIRAIIK-NTdrGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK15439 431 TRGVDVSARNDIYQLIRSIAAqNV--AVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
1272-1480 |
6.87e-11 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 64.10 E-value: 6.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD-ALGFL----GYCPQENALWPNlTVKEHLE 1346
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLrsqiGLVSQEPVLFDG-TIAENIR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 vfatvLGLSKSHA--AVTITRLADA----LQLQDQLKSPV----KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:cd03249 99 -----YGKPDATDeeVEEAAKKANIhdfiMSLPDGYDTLVgergSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1417 GQQQIWQAIRAIIKNtdRGALLTTHYMAEAEAlCDRVAILVSGRLRCIGSIQHLKSKFGKDYLL 1480
Cdd:cd03249 174 SEKLVQEALDRAMKG--RTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
464-620 |
7.56e-11 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 63.96 E-value: 7.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRISgVCPQSNVQF-DflTVRE 542
Cdd:PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS-YCAQTPTLFgD--TVYD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 543 NLRLFAKIRGVPPQE--VEKEVQRVLLELEM--KNIQDilarnLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRH 618
Cdd:PRK10247 100 NLIFPWQIRNQQPDPaiFLDDLERFALPDTIltKNIAE-----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
|
..
gi 1958662872 619 RV 620
Cdd:PRK10247 175 NV 176
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
424-618 |
9.69e-11 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 66.36 E-value: 9.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 424 PAPLSGGSFEPVSPEFHGKESIRIRNISKEYKG-KPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTK 502
Cdd:COG4615 307 AAAEPAAADAAAPPAPADFQTLELRGVTYRYPGeDGDEGFTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPES 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 503 GSVTIyNNRLSEMADLESvFR--ISGVcpqsnvqF-DFltvrenlRLFAKIRGVPPQEVEKEVQRVLLELEMKN---IQD 576
Cdd:COG4615 387 GEILL-DGQPVTADNREA-YRqlFSAV-------FsDF-------HLFDRLLGLDGEADPARARELLERLELDHkvsVED 450
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958662872 577 --ILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRH 618
Cdd:COG4615 451 grFSTTDLSQGQRKRLALLVALLEDRPILVFDEWAADQDPEFRR 494
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1272-1453 |
1.15e-10 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 63.22 E-value: 1.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLK-----------GSREGDAL--GFLGYCPQ-ENALwP 1337
Cdd:COG4778 28 DGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggwvdlaqaSPREILALrrRTIGYVSQfLRVI-P 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NLTVkehLEVFATVL---GLSKSHAAVTITRLADALQLQDQLKS-PVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGL 1413
Cdd:COG4778 107 RVSA---LDVVAEPLlerGVDREEARARARELLARLNLPERLWDlPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958662872 1414 DPEGQQQIWQAIRAIIkntDRG-ALLT-THYMAEAEALCDRV 1453
Cdd:COG4778 184 DAANRAVVVELIEEAK---ARGtAIIGiFHDEEVREAVADRV 222
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1272-1416 |
1.25e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 66.07 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVllKGSREGDalgfLGYCPQENALW--PNLTVKEHLEVFA 1349
Cdd:PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV--KWSENAN----IGYYAQDHAYDfeNDLTLFDWMSQWR 409
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1350 T----------VLGlskshaavtitRLadaLQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE 1416
Cdd:PRK15064 410 QegddeqavrgTLG-----------RL---LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1270-1532 |
1.50e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 63.60 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSRegdalgflgyCPQENALWpnLTVKEHL---- 1345
Cdd:PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE----------VNAENEKW--VRSKVGLvfqd 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 ---EVFA-TV----------LGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:PRK13647 88 pddQVFSsTVwddvafgpvnMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1412 GLDPEGQQQIwQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGsiqhlkskfGKDYLLEMKVktLEQVE 1491
Cdd:PRK13647 168 YLDPRGQETL-MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG---------DKSLLTDEDI--VEQAG 235
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1958662872 1492 LLNTEVLRLFpqaarqERYSPLMVYKLPV---EDVQPLSQAFFK 1532
Cdd:PRK13647 236 LRLPLVAQIF------EDLPELGQSKLPLtvkEAVQIIRKLLTK 273
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
443-659 |
1.75e-10 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 63.30 E-value: 1.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 443 ESIRIRNISKEY----------------KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVT 506
Cdd:PRK13546 3 VSVNIKNVTKEYriyrtnkermkdalipKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 507 IYNNrlsemadlESVFRIS-GVCPQsnvqfdfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGG 585
Cdd:PRK13546 83 RNGE--------VSVIAISaGLSGQ-------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSG 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 586 QKRKLTFGTAILGDSQIFLLDEP-TAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKLK 659
Cdd:PRK13546 148 MRAKLGFSINITVNPDILVIDEAlSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
144-383 |
2.06e-10 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 64.33 E-value: 2.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 144 ALQAAINAAIIETTTNHSVMEKLLSVSGKFMKIHP---FVRQEGILTDFFIFTCIVSFSPITYFVSISVARERKK-MKGL 219
Cdd:pfam12698 115 LILNALQSLLQQLNASALVLLLEALSTSAPIPVEStplFNPQSGYAYYLVGLILMIIILIGAAIIAVSIVEEKESrIKER 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 220 MMMMGLRDSAFWLSWGLLYAGFVFVMALSLALVIKSVQFLILTSFTVVFsLFLLYGLSMISLAFLMSVLVRKSVLTGLTV 299
Cdd:pfam12698 195 LLVSGVSPLQYWLGKILGDFLVGLLQLLIILLLLFGIGIPFGNLGLLLL-LFLLYGLAYIALGYLLGSLFKNSEDAQSII 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 300 FLLT-IFWGSLGFTALYRYLPAPLEWTLSLFSPFAFTLGMaqllrvdYDLNSNAPPDPAGsSNLIaatnfMLAFDALLYL 378
Cdd:pfam12698 274 GIVIlLLSGFFGGLFPLEDPPSFLQWIFSIIPFFSPIDGL-------LRLIYGDSLWEIA-PSLI-----ILLLFAVVLL 340
|
....*
gi 1958662872 379 ALTMY 383
Cdd:pfam12698 341 LLALL 345
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1267-1508 |
2.14e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 63.50 E-value: 2.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkGSREGDA-------------LGFLGYCPqEN 1333
Cdd:PRK13634 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAgkknkklkplrkkVGIVFQFP-EH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1334 ALWPNlTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQL--KSPVKtLSEGVKRKLCF--VLSIlgNPSILLLDEP 1409
Cdd:PRK13634 97 QLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELlaRSPFE-LSGGQMRRVAIagVLAM--EPEVLVLDEP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1410 STGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKfgKDYLLEMKV----- 1484
Cdd:PRK13634 173 TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD--PDELEAIGLdlpet 250
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958662872 1485 ----KTLEQ------------VELLNTEVLRLFPQAARQE 1508
Cdd:PRK13634 251 vkfkRALEEkfgisfpkpcltLEELAHEVVQLLRKGGHES 290
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
447-613 |
2.15e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 65.30 E-value: 2.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtiynnRLSEMADLesvfrisG 526
Cdd:PRK15064 322 VENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-----KWSENANI-------G 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 527 VCPQSNVQfDF---LTVRENLRLFAKirgvpPQEVEKEVQRVLLELEMKNiQDIL--ARNLSGGQKRKLTFGTAILGDSQ 601
Cdd:PRK15064 386 YYAQDHAY-DFendLTLFDWMSQWRQ-----EGDDEQAVRGTLGRLLFSQ-DDIKksVKVLSGGEKGRMLFGKLMMQKPN 458
|
170
....*....|..
gi 1958662872 602 IFLLDEPTAGLD 613
Cdd:PRK15064 459 VLVMDEPTNHMD 470
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
445-659 |
2.35e-10 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 63.33 E-value: 2.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLsVPTKGSVTIYNNRLSEMAdLESVFRI 524
Cdd:cd03289 3 MTVKDLTAKYTEGGNAV--LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGDIQIDGVSWNSVP-LQKWRKA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGVCPQSNVQFDFlTVRENLRLFAKIRgvppqevEKEVQRVLLELEMKNIQDILARNL-----------SGGQKRKLTFG 593
Cdd:cd03289 79 FGVIPQKVFIFSG-TFRKNLDPYGKWS-------DEEIWKVAEEVGLKSVIEQFPGQLdfvlvdggcvlSHGHKQLMCLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 594 TAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMdEADILADRKVFISRGKLK 659
Cdd:cd03289 151 RSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVR 215
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1270-1460 |
2.86e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 64.85 E-value: 2.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTKSTAGQVLLKGS-------REGDALGfLGYCPQENALWPNLT 1340
Cdd:TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvyPHGTWDGEIYWSGSplkasniRDTERAG-IVIIHQELTLVPELS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHL----EVfaTVLGLSKSHAAvtITRLADALQLQDQLKS-----PVKTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:TIGR02633 95 VAENIflgnEI--TLPGGRMAYNA--MYLRAKNLLRELQLDAdnvtrPVGDYGGGQQQLVEIAKALNKQARLLILDEPSS 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1412 GLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:TIGR02633 171 SLTEKETEILLDIIRD-LKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
464-636 |
3.29e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 65.32 E-value: 3.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLsVPTKGSVTIYNNRLSEMAdLESVFRISGVCPQSNVQFDFlTVREN 543
Cdd:TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDGVSWNSVT-LQTWRKAFGVIPQKVFIFSG-TFRKN 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 544 LRLFAkirgvppQEVEKEVQRVLLELEMKNIQDILARNL-----------SGGQKRKLTFGTAILGDSQIFLLDEPTAGL 612
Cdd:TIGR01271 1312 LDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLdfvlvdggyvlSNGHKQLMCLARSILSKAKILLLDEPSAHL 1384
|
170 180
....*....|....*....|....
gi 1958662872 613 DPFSRHRVWNLLKERKADRVVLFS 636
Cdd:TIGR01271 1385 DPVTLQIIRKTLKQSFSNCTVILS 1408
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
1272-1441 |
4.07e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 61.51 E-value: 4.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGqvllKGSREGDALGFLGYCPQENALWPNLTVKEHLEVFATV 1351
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPV----AGCVDVPDNQFGREASLIDAIGRKGDFKDAVELLNAV 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1352 lGLSkshaavtitrlaDAlQLqdqLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKN 1431
Cdd:COG2401 123 -GLS------------DA-VL---WLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARR 185
|
170
....*....|
gi 1958662872 1432 TDRGALLTTH 1441
Cdd:COG2401 186 AGITLVVATH 195
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1272-1441 |
4.34e-10 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 64.87 E-value: 4.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGdtKSTAGQVllkgsrEGDAL--GF----------LGYCPQENALWPNL 1339
Cdd:PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI------EGDIRisGFpkkqetfariSGYCEQNDIHSPQV 968
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLeVFATVLGL----SKSHAAVTITRLADALQLqDQLKSP------VKTLSEGVKRKLCFVLSILGNPSILLLDEP 1409
Cdd:PLN03140 969 TVRESL-IYSAFLRLpkevSKEEKMMFVDEVMELVEL-DNLKDAivglpgVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046
|
170 180 190
....*....|....*....|....*....|..
gi 1958662872 1410 STGLDPEGQQQIWQAIRAIIkNTDRGALLTTH 1441
Cdd:PLN03140 1047 TSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1077
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
466-614 |
4.99e-10 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 62.09 E-value: 4.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 466 DLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA--DLESVFRISGVCPQSNVQFDFLTVREN 543
Cdd:PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSrsRLYTVRKRMSMLFQSGALFTDMNVFDN 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 544 ----LRLFAKIrgvpPQEVEKEVqrVLLELE---MKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDP 614
Cdd:PRK11831 105 vaypLREHTQL----PAPLLHST--VMMKLEavgLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1270-1461 |
5.89e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 62.56 E-value: 5.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGFLGYCPQENA--------------- 1334
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSkkiknfkelrrrvsm 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1335 --LWPNL-----TVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQL--KSPVKtLSEGVKRKLCF--VLSIlgNPSI 1403
Cdd:PRK13631 121 vfQFPEYqlfkdTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYleRSPFG-LSGGQKRRVAIagILAI--QPEI 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1404 LLLDEPSTGLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK13631 198 LIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
478-614 |
6.74e-10 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 60.63 E-value: 6.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 478 ALL--GHSGAGKSTLLNILSGLSVPTKGSVTIyNNRLSEMADLESVFRISGVCPQSNVQFDFLtvrENLRLFAKIRGVPP 555
Cdd:PRK13543 39 ALLvqGDNGAGKTTLLRVLAGLLHVESGQIQI-DGKTATRGDRSRFMAYLGHLPGLKADLSTL---ENLHFLCGLHGRRA 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 556 QEVEKEVqrvLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDP 614
Cdd:PRK13543 115 KQMPGSA---LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
434-658 |
6.83e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 63.45 E-value: 6.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 434 PVSPEFHGKESIRIRNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS 513
Cdd:PRK10522 312 PRPQAFPDWQTLELRNVTFAY---QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 514 E--MADLESVFrisgvcpqSNVQFDFltvrenlRLFAKIRGVPPQEVEKE-VQRVLLELEMKN---IQD--ILARNLSGG 585
Cdd:PRK10522 389 AeqPEDYRKLF--------SAVFTDF-------HLFDQLLGPEGKPANPAlVEKWLERLKMAHkleLEDgrISNLKLSKG 453
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 586 QKRKLTFGTAILGDSQIFLLDEPTAGLDP-FSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPhFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQL 527
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1240-1460 |
8.00e-10 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 61.48 E-value: 8.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1240 DEKPVIVASCLRKEYAGKWkhclskkkakiATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGsRE 1319
Cdd:PRK11701 2 MDQPLLSVRGLTKLYGPRK-----------GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM-RD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1320 GD-----ALG-----FL-----GYCPQ--ENALWPNLT----VKEHLevfatvLGLSKSH------------AAVTItrl 1366
Cdd:PRK11701 70 GQlrdlyALSeaerrRLlrtewGFVHQhpRDGLRMQVSaggnIGERL------MAVGARHygdiratagdwlERVEI--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1367 aDALQLQDQlksPvKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEA 1446
Cdd:PRK11701 141 -DAARIDDL---P-TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA 215
|
250
....*....|....
gi 1958662872 1447 EALCDRVAILVSGR 1460
Cdd:PRK11701 216 RLLAHRLLVMKQGR 229
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1270-1475 |
8.03e-10 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 63.31 E-value: 8.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDalgflgYCpqENALWPNLT-VKEHLEVF 1348
Cdd:PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD------YS--EAALRQAISvVSQRVHLF 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1349 ATVLGLSKSHAAVTIT--RLADALQ---LQDQLKSPV----------KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGL 1413
Cdd:PRK11160 427 SATLRDNLLLAAPNASdeALIEVLQqvgLEKLLEDDKglnawlgeggRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1414 DPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAEALcDRVAILVSGRLRCIGSIQHLKSKFG 1475
Cdd:PRK11160 507 DAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQELLAQQG 565
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1263-1461 |
9.72e-10 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 60.94 E-value: 9.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1263 SKKKAkiaTRNVSFCVRKGEILGLLGHNGAGKSTSLKMIS--GD---TKSTAGQVLLKG----SREGDALGF---LGYCP 1330
Cdd:PRK14239 16 NKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDlnpEVTITGSIVYNGhniySPRTDTVDLrkeIGMVF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1331 QENALWPnLTVKEHLEVFATVLGLSKSH---AAVTITRLADAL--QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILL 1405
Cdd:PRK14239 93 QQPNPFP-MSIYENVVYGLRLKGIKDKQvldEAVEKSLKGASIwdEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIIL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK14239 172 LDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
457-658 |
1.02e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 63.71 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 457 KPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGL---SVPTKGSVTIYNNRLSEMADLESVFRISgvcpQSNV 533
Cdd:PLN03140 174 KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKldpSLKVSGEITYNGYRLNEFVPRKTSAYIS----QNDV 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 534 QFDFLTVRENLRLFAKIRGVPPQ-----EV-----------EKEVQRVLLELEMKNIQ---------------------- 575
Cdd:PLN03140 250 HVGVMTVKETLDFSARCQGVGTRydllsELarrekdagifpEAEVDLFMKATAMEGVKsslitdytlkilgldickdtiv 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 576 -DILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFS-TQFMDEADILADRKV 651
Cdd:PLN03140 330 gDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQivHLTEATVLMSlLQPAPETFDLFDDII 409
|
....*..
gi 1958662872 652 FISRGKL 658
Cdd:PLN03140 410 LLSEGQI 416
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
436-658 |
1.16e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 62.62 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 436 SPEFHGKESIRIRNISKeyKGKPSKIealkdlTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEM 515
Cdd:PRK11288 249 RPRPLGEVRLRLDGLKG--PGLREPI------SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 516 ADLESVFRISGVCPQSNVQ---FDFLTVRENL-----RLFAKIRGVPPQEVEKE-VQRVLLELEMKNI---QDIlaRNLS 583
Cdd:PRK11288 321 SPRDAIRAGIMLCPEDRKAegiIPVHSVADNInisarRHHLRAGCLINNRWEAEnADRFIRSLNIKTPsreQLI--MNLS 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 584 GGQKRKltfgtAILG-----DSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEADILADRKVFISRGK 657
Cdd:PRK11288 399 GGNQQK-----AILGrwlseDMKVILLDEPTRGIDVGAKHEIYNVIYElAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
.
gi 1958662872 658 L 658
Cdd:PRK11288 474 I 474
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
457-626 |
1.17e-09 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 61.65 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 457 KPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA---------DLESVFR--IS 525
Cdd:PRK15079 30 PPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKddewravrsDIQMIFQdpLA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 526 GVCPQSNVQfDFLTvrENLRLFAKirGVPPQEVEKEVQRVLLELEM-KNIQDILARNLSGGQKRKLTFGTAILGDSQIFL 604
Cdd:PRK15079 110 SLNPRMTIG-EIIA--EPLRTYHP--KLSRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLII 184
|
170 180
....*....|....*....|..
gi 1958662872 605 LDEPTAGLDPFSRHRVWNLLKE 626
Cdd:PRK15079 185 CDEPVSALDVSIQAQVVNLLQQ 206
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
427-613 |
1.19e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 63.43 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 427 LSGGSFEPVSPEFH-----GKESIRIRNISKEY-KGKPSkieALKDLTLDIYEGQITALLGHSGAGKSTLLNILsglsvp 500
Cdd:TIGR00957 614 LSHEELEPDSIERRtikpgEGNSITVHNATFTWaRDLPP---TLNGITFSIPEGALVAVVGQVGCGKSSLLSAL------ 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 501 tkgsvtiynnrLSEMADLESVFRISG----VCPQSNVQFDflTVRENLrLFAKIRGVPPQEVEKEVQRVLLELEMKNIQD 576
Cdd:TIGR00957 685 -----------LAEMDKVEGHVHMKGsvayVPQQAWIQND--SLRENI-LFGKALNEKYYQQVLEACALLPDLEILPSGD 750
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958662872 577 IL-----ARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:TIGR00957 751 RTeigekGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
1272-1460 |
1.33e-09 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 59.79 E-value: 1.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregdalgfLGYCPQENalW-PNLTVKEHL----- 1345
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--------IAYVSQEP--WiQNGTIRENIlfgkp 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 ---EVFATVLglskshaavtitrlaDALQLQDQLKSPVK-----------TLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:cd03250 92 fdeERYEKVI---------------KACALEPDLEILPDgdlteigekgiNLSGGQKQRISLARAVYSDADIYLLDDPLS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1412 GLDPEGQQQIWQ-AIRAIIKNtDRGALLTTHYMAEAEAlCDRVAILVSGR 1460
Cdd:cd03250 157 AVDAHVGRHIFEnCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1270-1460 |
1.33e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 62.64 E-value: 1.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTKSTAGQVLLKGS-------REGDALGfLGYCPQENALWPNLT 1340
Cdd:PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGvyPHGTYEGEIIFEGEelqasniRDTERAG-IAIIHQELALVKELS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLevFatvLGLSKSHAAVT--------ITRLADALQLQDQLKSPVKTLSEGvKRKLCFVLSILG-NPSILLLDEPST 1411
Cdd:PRK13549 99 VLENI--F---LGNEITPGGIMdydamylrAQKLLAQLKLDINPATPVGNLGLG-QQQLVEIAKALNkQARLLILDEPTA 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1412 GLDpEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:PRK13549 173 SLT-ESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1267-1461 |
1.36e-09 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 60.41 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-------SRE-GDALGFLgycPQE------ 1332
Cdd:PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDkpismlsSRQlARRLALL---PQHhltpeg 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 --------------NALWPNLTVKEHLEVfatvlglSKSHAAVTITRLADalqlqdqlkSPVKTLSEGvKRKLCFVLSIL 1398
Cdd:PRK11231 91 itvrelvaygrspwLSLWGRLSAEDNARV-------NQAMEQTRINHLAD---------RRLTDLSGG-QRQRAFLAMVL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1399 G-NPSILLLDEPSTGLDPEGQQQIWQAIRaIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK11231 154 AqDTPVVLLDEPTTYLDINHQVELMRLMR-ELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1273-1460 |
1.42e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 62.42 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKS-TSLKMI-----------SGDTKsTAGQVLLKGSRE------GD--ALGFlgycpQE 1332
Cdd:PRK15134 27 DVSLQIEAGETLALVGESGSGKSvTALSILrllpsppvvypSGDIR-FHGESLLHASEQtlrgvrGNkiAMIF-----QE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 N--ALWPNLTVKEHL-EVFATVLGLSKSHAAVTITRLADAL---QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLL 1406
Cdd:PRK15134 101 PmvSLNPLHTLEKQLyEVLSLHRGMRREAARGEILNCLDRVgirQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1407 DEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:PRK15134 181 DEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
462-658 |
1.44e-09 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 62.38 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 462 EALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFR----------ISGVCPQS 531
Cdd:PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARglvylpedrqSSGLYLDA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 532 NVQFDFLTVRENLR-LFAKirgvpPQEVEKEVQRVLLELEMK-NIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPT 609
Cdd:PRK15439 357 PLAWNVCALTHNRRgFWIK-----PARENAVLERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 610 AGLDPFSRHRVWNLLKERKADRV-VLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVaVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1281-1461 |
1.68e-09 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 60.46 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1281 GEILGLLGHNGAGKSTSLKMISGDTKSTAGQVL-----LKGSREGDALGFlgycpQENALWPNLTVKEHLEvfatvLGLS 1355
Cdd:PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLagtapLAEAREDTRLMF-----QDARLLPWKKVIDNVG-----LGLK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1356 -----KSHAAVtitrlaDALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP----EGQQQI---WQ 1423
Cdd:PRK11247 108 gqwrdAALQAL------AAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAltriEMQDLIeslWQ 181
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958662872 1424 airaiikntDRG--ALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK11247 182 ---------QHGftVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
461-613 |
1.74e-09 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 60.04 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 461 IEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSG---LSVpTKGSVTIYNNRLSEM-ADLES---VF-------RISG 526
Cdd:CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpaYKI-LEGDILFKGESILDLePEERAhlgIFlafqypiEIPG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 527 VcpqSNVqfDFLTVRENLRLfaKIRGVPPQEVEKEVQRVLLELEMKNIQDI-LARNL----SGGQKRKLTFGTAILGDSQ 601
Cdd:CHL00131 99 V---SNA--DFLRLAYNSKR--KFQGLPELDPLEFLEIINEKLKLVGMDPSfLSRNVnegfSGGEKKRNEILQMALLDSE 171
|
170
....*....|..
gi 1958662872 602 IFLLDEPTAGLD 613
Cdd:CHL00131 172 LAILDETDSGLD 183
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1273-1441 |
2.03e-09 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 59.73 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsrEGDALGFL---------GYCPQENALWPNlTVKE 1343
Cdd:PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF----EGEDISTLkpeiyrqqvSYCAQTPTLFGD-TVYD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 HLeVFATVLglskSHAAVTITRLADALQL----QDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:PRK10247 100 NL-IFPWQI----RNQQPDPAIFLDDLERfalpDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
|
170 180
....*....|....*....|..
gi 1958662872 1420 QIWQAIRAIIKNTDRGALLTTH 1441
Cdd:PRK10247 175 NVNEIIHRYVREQNIAVLWVTH 196
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
1003-1179 |
2.24e-09 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 60.87 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1003 YIAMSSVTDYKNKVWFQLRVSGLFPSAYWFGQALVDIPLYCFVFLFMSLMDYLLGFPDATLIVIthvlqIPCSVGYAISL 1082
Cdd:pfam12698 178 IIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQLLIILLLLFGIGIPFGNLGLL-----LLLFLLYGLAY 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1083 IFLTYVISFISRKGKKNSGIwSLCFYIITMFSVVAMLLDFNVDAILYCIIFLLPPSTLIgclilsmhLFIYRISREESIV 1162
Cdd:pfam12698 253 IALGYLLGSLFKNSEDAQSI-IGIVILLLSGFFGGLFPLEDPPSFLQWIFSIIPFFSPI--------DGLLRLIYGDSLW 323
|
170
....*....|....*..
gi 1958662872 1163 EPFLVFLIPLLHVFIFI 1179
Cdd:pfam12698 324 EIAPSLIILLLFAVVLL 340
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
441-658 |
2.28e-09 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 61.96 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 441 GKESIRIRNISKEykgkpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLsemaDLES 520
Cdd:COG1129 253 GEVVLEVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPV----RIRS 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 521 VF--------------RISGVCPQsnvqfdfLTVREN-----LRLFAKIRGVPPQEVEKEVQRVLLELEMK--NIqDILA 579
Cdd:COG1129 321 PRdairagiayvpedrKGEGLVLD-------LSIRENitlasLDRLSRGGLLDRRRERALAEEYIKRLRIKtpSP-EQPV 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 580 RNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERkADR---VVLFSTQfMDEADILADRKVFISRG 656
Cdd:COG1129 393 GNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL-AAEgkaVIVISSE-LPELLGLSDRILVMREG 470
|
..
gi 1958662872 657 KL 658
Cdd:COG1129 471 RI 472
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1272-1465 |
2.33e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 59.86 E-value: 2.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMIS-----GDTKSTAGQVLLKG----SREGDALGF---LGYCPQENALWPNL 1339
Cdd:PRK14267 21 KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNrllelNEEARVEGEVRLFGrniySPDVDPIEVrreVGMVFQYPNPFPHL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHLEVFATVLGLSKSHAAVTiTRLADAL-------QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:PRK14267 101 TIYDNVAIGVKLNGLVKSKKELD-ERVEWALkkaalwdEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTAN 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1413 LDPEGQQQIWQAIRAIikNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIG 1465
Cdd:PRK14267 180 IDPVGTAKIEELLFEL--KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
445-663 |
2.34e-09 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 58.69 E-value: 2.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLS--VPTKGSVTIYNNRLSEMADLESVF 522
Cdd:cd03217 1 LEIKDLHVSVGGK----EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLPPEERAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQFDFLTVRENLRlfakirgvppqEVEKevqrvllelemkniqdilarNLSGGQKRKLTFGTAILGDSQI 602
Cdd:cd03217 77 LGIFLAFQYPPEIPGVKNADFLR-----------YVNE--------------------GFSGGEKKRNEILQLLLLEPDL 125
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFSTQFMDEAD-ILADRKVFISRGKLKCAGS 663
Cdd:cd03217 126 AILDEPDSGLDIDALRLVAEVINKlREEGKSVLIITHYQRLLDyIKPDRVHVLYDGRIVKSGD 188
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1259-1464 |
2.46e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 61.67 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1259 KHCLSKKKAKIatRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-----------REGDAL---- 1323
Cdd:PRK10982 254 RNLTSLRQPSI--RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKkinnhnaneaiNHGFALvtee 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1324 ----GFLGYCPQE-NALWPNLtvkehlEVFATVLGLSKSHAAVTITR-LADALQLQD-QLKSPVKTLSEGVKRKLCFVLS 1396
Cdd:PRK10982 332 rrstGIYAYLDIGfNSLISNI------RNYKNKVGLLDNSRMKSDTQwVIDSMRVKTpGHRTQIGSLSGGNQQKVIIGRW 405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1397 ILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNtDRGALLTTHYMAEAEALCDRVAILVSGRLRCI 1464
Cdd:PRK10982 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGI 472
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
447-613 |
3.09e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 62.05 E-value: 3.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGKPSKIeaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVT--IYNNRLSEmADLESVFRI 524
Cdd:TIGR00956 62 FRKLKKFRDTKTFDI--LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEgvITYDGITP-EEIKKHYRG 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SGV-CPQSNVQFDFLTVRENLRLFAKIRGVP--PQEVEKEVQRV-LLELEMK----------NIQDILARNLSGGQKRKL 590
Cdd:TIGR00956 139 DVVyNAETDVHFPHLTVGETLDFAARCKTPQnrPDGVSREEYAKhIADVYMAtyglshtrntKVGNDFVRGVSGGERKRV 218
|
170 180
....*....|....*....|...
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLD 613
Cdd:TIGR00956 219 SIAEASLGGAKIQCWDNATRGLD 241
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1273-1462 |
3.12e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 61.38 E-value: 3.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKST-AGQVLLKGS-----------REGDALgflgyCPQE---NALWP 1337
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKpvdirnpaqaiRAGIAM-----VPEDrkrHGIVP 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NLTVKEHLEvfatvlgLSKSHAAVTITRLADALQLQ------DQLKS-------PVKTLSEGVKRKLCFVLSILGNPSIL 1404
Cdd:TIGR02633 353 ILGVGKNIT-------LSVLKSFCFKMRIDAAAELQiigsaiQRLKVktaspflPIGRLSGGNQQKAVLAKMLLTNPRVL 425
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1405 LLDEPSTGLDPEGQQQIWQAIRAIIKntdRGA--LLTTHYMAEAEALCDRVAILVSGRLR 1462
Cdd:TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQ---EGVaiIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
431-659 |
3.94e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.99 E-value: 3.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 431 SFEPVSPEFHGKESIRIRNISKEYKGKPsKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGlSVPTK--GSVTIY 508
Cdd:TIGR02633 244 SLYPHEPHEIGDVILEARNLTCWDVINP-HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKfeGNVFIN 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 509 NNRLSEMADLESVF----------RISGVCPQsnvqfdfLTVRENLRL-----FAKIRGVPPQEVEKEVQRVLLELEMKN 573
Cdd:TIGR02633 322 GKPVDIRNPAQAIRagiamvpedrKRHGIVPI-------LGVGKNITLsvlksFCFKMRIDAAAELQIIGSAIQRLKVKT 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 574 IQDILA-RNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRVVLFSTQfMDEADILADRK 650
Cdd:TIGR02633 395 ASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQlaQEGVAIIVVSSE-LAEVLGLSDRV 473
|
....*....
gi 1958662872 651 VFISRGKLK 659
Cdd:TIGR02633 474 LVIGEGKLK 482
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1244-1444 |
4.07e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 61.10 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1244 VIVASCLRKEYAGKwkhclskkkakIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsreGDAL 1323
Cdd:TIGR03719 322 VIEAENLTKAFGDK-----------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-----GETV 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1324 GfLGYCPQE-NALWPNLTVKEHLEVFATVLGLSK----SHAAVTitrlADALQLQDQLKsPVKTLSEGVKRKLCFVLSIL 1398
Cdd:TIGR03719 386 K-LAYVDQSrDALDPNKTVWEEISGGLDIIKLGKreipSRAYVG----RFNFKGSDQQK-KVGQLSGGERNRVHLAKTLK 459
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1399 GNPSILLLDEPSTGLDPEGQQQIWQAIR-----AIIKNTDRGAL--LTTHYMA 1444
Cdd:TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLnfagcAVVISHDRWFLdrIATHILA 512
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1268-1466 |
4.23e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 59.29 E-value: 4.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG-----DTK-STAGQVLLKGSR--EGDALGF---LGYCPQENALW 1336
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRlieiyDSKiKVDGKVLYFGKDifQIDAIKLrkeVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLEVFATVLGLSKSHAAVTIT-----RLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:PRK14246 103 PHLSIYDNIAYPLKSHGIKEKREIKKIVeeclrKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1412 GLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
444-613 |
4.96e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 61.53 E-value: 4.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAdLESVFR 523
Cdd:PLN03232 1234 SIKFEDVHLRYR--PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG-LTDLRR 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNVQFDFlTVRENLRLFAkirgvppqevEKEVQRVLLELEMKNIQDILARN--------------LSGGQKRK 589
Cdd:PLN03232 1311 VLSIIPQSPVLFSG-TVRFNIDPFS----------EHNDADLWEALERAHIKDVIDRNpfgldaevseggenFSVGQRQL 1379
|
170 180
....*....|....*....|....
gi 1958662872 590 LTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PLN03232 1380 LSLARALLRRSKILVLDEATASVD 1403
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1270-1492 |
5.47e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 59.41 E-value: 5.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG----SREGDA--------LGFLGYCPqENALWP 1337
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDititHKTKDKyirpvrkrIGMVFQFP-ESQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NlTVKEHLEVFATVLGLSKSHAAvtitrlADALQLQDQL--------KSPVKtLSEGVKRKLCFVlSILG-NPSILLLDE 1408
Cdd:PRK13646 101 D-TVEREIIFGPKNFKMNLDEVK------NYAHRLLMDLgfsrdvmsQSPFQ-MSGGQMRKIAIV-SILAmNPDIIVLDE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1409 PSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKfgKDYLLEMKVKTLE 1488
Cdd:PRK13646 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD--KKKLADWHIGLPE 249
|
....
gi 1958662872 1489 QVEL 1492
Cdd:PRK13646 250 IVQL 253
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1274-1466 |
5.48e-09 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 58.66 E-value: 5.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVL-------LKGSREGDALGF-----------LGYCPQENAL 1335
Cdd:COG4598 27 VSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRvggeeirLKPDRDGELVPAdrrqlqrirtrLGMVFQSFNL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1336 WPNLTVKEHL-EVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEG------VKRKLCFvlsilgNPSILLLDE 1408
Cdd:COG4598 107 WSHMTVLENViEAPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGqqqraaIARALAM------EPEVMLFDE 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1409 PSTGLDPEGQQQIWQAIRAIIKNtDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:COG4598 181 PTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGP 237
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
434-663 |
5.78e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 60.64 E-value: 5.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 434 PVSPEFHGKESIRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKS-TLLNIL-----SGLSVPTKGSVTI 507
Cdd:PRK10261 2 PHSDELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMrlleqAGGLVQCDKMLLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 508 YNNR----LSEM----------ADLESVFRIsgvcPQSNVQFDFLT---VRENLRLFakiRGVPPQEVEKEVQRVLLELE 570
Cdd:PRK10261 82 RRSRqvieLSEQsaaqmrhvrgADMAMIFQE----PMTSLNPVFTVgeqIAESIRLH---QGASREEAMVEAKRMLDQVR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 571 MKNIQDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLK--ERKADRVVLFSTQFMDEADI 645
Cdd:PRK10261 155 IPEAQTILSRyphQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKvlQKEMSMGVIFITHDMGVVAE 234
|
250
....*....|....*...
gi 1958662872 646 LADRKVFISRGKLKCAGS 663
Cdd:PRK10261 235 IADRVLVMYQGEAVETGS 252
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1265-1461 |
6.21e-09 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 59.07 E-value: 6.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1265 KKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGD-TKSTA-------GQVLLKGS--REGDALGFL---GYCPQ 1331
Cdd:PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDlTGGGAprgarvtGDVTLNGEplAAIDAPRLArlrAVLPQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1332 ENALWPNLTVKEhlevfATVLGL--------SKSHAAVTITRLADALQLQDQL-KSPVKTLSEGVKRKLCF--VLSIL-- 1398
Cdd:PRK13547 91 AAQPAFAFSARE-----IVLLGRypharragALTHRDGEIAWQALALAGATALvGRDVTTLSGGELARVQFarVLAQLwp 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1399 -----GNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK13547 166 phdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1250-1466 |
7.04e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 59.47 E-value: 7.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1250 LRKEYAGKWKhclskkkakiATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD-------- 1321
Cdd:PRK11650 9 VRKSYDGKTQ----------VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNElepadrdi 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1322 ALGFLGYcpqenALWPNLTVKEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNP 1401
Cdd:PRK11650 79 AMVFQNY-----ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1402 SILLLDEPSTGLDPEGQQQiwqaIRAIIKNTDR----GALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:PRK11650 154 AVFLFDEPLSNLDAKLRVQ----MRLEIQRLHRrlktTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
410-664 |
7.58e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 60.95 E-value: 7.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 410 PRKPAHVILEDGIDPAPLSGGSFEPVSPEFHGKESIRIRNISKEYKGKPSKIEA-----LKDLTLDIYEGQITALLGHSG 484
Cdd:PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELepkvlLRDVSVSVPRGKLTVVLGATG 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 485 AGKSTLLNILSGLSVPTKGSVtiynnrLSEmadlesvfRISGVCPQS----NVqfdflTVRENLRLFAKIRGVPPQEV-- 558
Cdd:PTZ00243 697 SGKSTLLQSLLSQFEISEGRV------WAE--------RSIAYVPQQawimNA-----TVRGNILFFDEEDAARLADAvr 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 559 ----EKEVQRVL--LELEM--KNIqdilarNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHR-VWNLLKERKA 629
Cdd:PTZ00243 758 vsqlEADLAQLGggLETEIgeKGV------NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERvVEECFLGALA 831
|
250 260 270
....*....|....*....|....*....|....*..
gi 1958662872 630 DRVVLFSTQfmdEADIL--ADRKVFISRGKLKCAGSS 664
Cdd:PTZ00243 832 GKTRVLATH---QVHVVprADYVVALGDGRVEFSGSS 865
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1281-1425 |
9.36e-09 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 60.18 E-value: 9.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1281 GEILGLLGHNGAGKSTSLKMISGDTKSTAGQV-LLKGSRegdalgfLGYCPQENA--LWPNLTVKEHLEVFAtvlglsks 1357
Cdd:PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIgLAKGIK-------LGYFAQHQLefLRADESPLQHLARLA-------- 402
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1358 hAAVTITRLADAL---QLQ-DQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAI 1425
Cdd:PRK10636 403 -PQELEQKLRDYLggfGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
473-648 |
9.92e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 58.15 E-value: 9.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 473 EGQITALLGHSGAGKSTLLNILSGLSVPTKGSVT--------IYNNRLSEMADLESVFRISGVCPQSNVQF-DFL----- 538
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDdppdwdeiLDEFRGSELQNYFTKLLEGDVKVIVKPQYvDLIpkavk 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 539 -TVRENLRlfakirgvppQEVEKEVQRVLLE-LEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFS 616
Cdd:cd03236 105 gKVGELLK----------KKDERGKLDELVDqLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174
|
170 180 190
....*....|....*....|....*....|...
gi 1958662872 617 RHRVWNLLKER-KADRVVLFSTQFMDEADILAD 648
Cdd:cd03236 175 RLNAARLIRELaEDDNYVLVVEHDLAVLDYLSD 207
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
444-613 |
1.00e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 60.52 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI--YNNRLSEMADLESV 521
Cdd:PLN03130 1237 SIKFEDVVLRYR--PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIdgCDISKFGLMDLRKV 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 522 FrisGVCPQSNVQFDFlTVRENLRLFAKIRGVPPQEvekevqrvllELEMKNIQDILARN--------------LSGGQK 587
Cdd:PLN03130 1315 L---GIIPQAPVLFSG-TVRFNLDPFNEHNDADLWE----------SLERAHLKDVIRRNslgldaevseagenFSVGQR 1380
|
170 180
....*....|....*....|....*.
gi 1958662872 588 RKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVD 1406
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1270-1470 |
1.04e-08 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 58.97 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKS-TSLKM---------ISGDTKSTAGQVL------LKGSR-EGDALGFlgycpQE 1332
Cdd:PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSqTAFALmgllaangrIGGSATFNGREILnlpekeLNKLRaEQISMIF-----QD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 --NALWPNLTVKEHL-EVFATVLGLSKSHAAVTITRLADALQLQDQLKS----PvKTLSEGVKRKLCFVLSILGNPSILL 1405
Cdd:PRK09473 106 pmTSLNPYMRVGEQLmEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRmkmyP-HEFSGGMRQRVMIAMALLCRPKLLI 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1406 LDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:PRK09473 185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1267-1446 |
1.08e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 58.22 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1267 AKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDA--------LGFLGYCPqENALWPN 1338
Cdd:PRK13648 21 ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDnfeklrkhIGIVFQNP-DNQFVGS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 lTVKehlevFATVLGLsKSHAAVT---ITRLADALQ---LQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTG 1412
Cdd:PRK13648 100 -IVK-----YDVAFGL-ENHAVPYdemHRRVSEALKqvdMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSM 172
|
170 180 190
....*....|....*....|....*....|....
gi 1958662872 1413 LDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEA 1446
Cdd:PRK13648 173 LDPDARQNLLDLVRKVKSEHNITIISITHDLSEA 206
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
1272-1511 |
1.14e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 57.94 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKST----SLKMISgdtksTAGQVLLKGSRegdalgflgycpqenalWPNLTVKEHLEV 1347
Cdd:cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTllsaFLRLLN-----TEGDIQIDGVS-----------------WNSVPLQKWRKA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1348 FATV--------------LGLSKSHAAVTITRLADAL-----------QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPS 1402
Cdd:cd03289 79 FGVIpqkvfifsgtfrknLDPYGKWSDEEIWKVAEEVglksvieqfpgQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1403 ILLLDEPSTGLDPegqqQIWQAIRAIIKN--TDRGALLTTHYMaEAEALCDRVAILVSGRLRCIGSIQHLKSKfgkdyll 1480
Cdd:cd03289 159 ILLLDEPSAHLDP----ITYQVIRKTLKQafADCTVILSEHRI-EAMLECQRFLVIEENKVRQYDSIQKLLNE------- 226
|
250 260 270
....*....|....*....|....*....|.
gi 1958662872 1481 emkvKTLEQVELLNTEVLRLFPQAARQERYS 1511
Cdd:cd03289 227 ----KSHFKQAISPSDRLKLFPRRNSSKSKR 253
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1264-1440 |
1.37e-08 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 60.12 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1264 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKS---TAGQVLLKGsREGDAlGF---LGYCPQENALWP 1337
Cdd:TIGR00956 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTgviTGGDRLVNG-RPLDS-SFqrsIGYVQQQDLHLP 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NLTVKEHLEvFATVLGLSKShaaVTIT-------RLADALQLQDQLKSPVKTLSEGV----KRKLCFVLSILGNPSILL- 1405
Cdd:TIGR00956 850 TSTVRESLR-FSAYLRQPKS---VSKSekmeyveEVIKLLEMESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKLLLf 925
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958662872 1406 LDEPSTGLDpegQQQIWQAIRAIIKNTDRG-ALLTT 1440
Cdd:TIGR00956 926 LDEPTSGLD---SQTAWSICKLMRKLADHGqAILCT 958
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
445-612 |
1.45e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 59.25 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGS-------VTIYNNRLSEMAD 517
Cdd:PRK10762 5 LQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSilylgkeVTFNGPKSSQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 518 LESVFRISGVCPQsnvqfdfLTVRENL---RLFAKIRG-VPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFG 593
Cdd:PRK10762 81 IGIIHQELNLIPQ-------LTIAENIflgREFVNRFGrIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153
|
170
....*....|....*....
gi 1958662872 594 TAILGDSQIFLLDEPTAGL 612
Cdd:PRK10762 154 KVLSFESKVIIMDEPTDAL 172
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
476-658 |
1.63e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 57.80 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 476 ITALLGHSGAGKSTLLNILSGLSVPTKG-----SVTIYNNRLSEMADLESVFRISGVCPQSNVQFDfLTVRENLrlFAKI 550
Cdd:PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNV--LAGV 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 551 RG---VPPQEVEKEVQRVLLELEMKN-IQDILARN---LSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNL 623
Cdd:PRK14271 126 RAhklVPRKEFRGVAQARLTEVGLWDaVKDRLSDSpfrLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF 205
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958662872 624 LKERkADRV-VLFSTQFMDEADILADRKVFISRGKL 658
Cdd:PRK14271 206 IRSL-ADRLtVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
1278-1456 |
1.99e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 55.66 E-value: 1.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTKSTagqvllkgsregdalgflgycpQENALWPNLTVkehlevfatvlglsks 1357
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPN----------------------GDNDEWDGITP---------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1358 haavtitrladalqlqdQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGAL 1437
Cdd:cd03222 64 -----------------VYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTAL 126
|
170
....*....|....*....
gi 1958662872 1438 LTTHYMAEAEALCDRVAIL 1456
Cdd:cd03222 127 VVEHDLAVLDYLSDRIHVF 145
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1273-1462 |
2.34e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 58.40 E-value: 2.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTK-STAGQVLLKG-------SREGDALGfLGYCPQE---NALWPNLTV 1341
Cdd:PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGkpvkirnPQQAIAQG-IAMVPEDrkrDGIVPVMGV 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1342 KEH-----LEVFATVLGLSKSHAAVTITRLADALQLQ-DQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:PRK13549 359 GKNitlaaLDRFTGGSRIDDAAELKTILESIQRLKVKtASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958662872 1416 EGQQQIWQAIRAIIKntdRGA--LLTTHYMAEAEALCDRVAILVSGRLR 1462
Cdd:PRK13549 439 GAKYEIYKLINQLVQ---QGVaiIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
443-613 |
2.64e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 58.64 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 443 ESIRIRNISKEYKGKPSKIEA--------------LKDLTLD-----IYEGQITALLGHSGAGKSTLLNILSGLSVPTKG 503
Cdd:COG1245 316 ENVRIRDEPIEFEVHAPRREKeeetlveypdltksYGGFSLEveggeIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEG 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 504 SVtiynnrlsemadlESVFRISgVCPQSnVQFDF-LTVRENLRLFAKiRGVPPQEVEKEVQRvllELEMKNIQDILARNL 582
Cdd:COG1245 396 EV-------------DEDLKIS-YKPQY-ISPDYdGTVEEFLRSANT-DDFGSSYYKTEIIK---PLGLEKLLDKNVKDL 456
|
170 180 190
....*....|....*....|....*....|.
gi 1958662872 583 SGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:COG1245 457 SGGELQRVAIAACLSRDADLYLLDEPSAHLD 487
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
443-613 |
2.78e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 58.67 E-value: 2.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 443 ESIRIRNISKEYKGKPSKIEA--------------LKDLTLD-----IYEGQITALLGHSGAGKSTLLNILSGLSVPTKG 503
Cdd:PRK13409 315 ENMRIRPEPIEFEERPPRDESeretlveypdltkkLGDFSLEveggeIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 504 SVtiynnrlsemadlESVFRISgVCPQSnVQFDF-LTVRENLRLFAKIRGVPPQEVEkevqrVLLELEMKNIQDILARNL 582
Cdd:PRK13409 395 EV-------------DPELKIS-YKPQY-IKPDYdGTVEDLLRSITDDLGSSYYKSE-----IIKPLQLERLLDKNVKDL 454
|
170 180 190
....*....|....*....|....*....|.
gi 1958662872 583 SGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PRK13409 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1288-1441 |
3.00e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 55.65 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1288 GHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGD-ALGFLGYCPQENALWPNLTVKEHLEVFATVLglsksHAAVTITRL 1366
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNiAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----NSAETLYAA 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 1367 ADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIrAIIKNTDRGALLTTH 1441
Cdd:PRK13541 108 IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI-VMKANSGGIVLLSSH 181
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
1272-1466 |
3.22e-08 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 55.50 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-----REGDALGFLGYCPQENALWPNlTVKEHLE 1346
Cdd:cd03369 25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIdistiPLEDLRSSLTIIPQDPTLFSG-TIRSNLD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 VFatvlglskshaavtiTRLADAlQLQDQLKspVK----TLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIW 1422
Cdd:cd03369 104 PF---------------DEYSDE-EIYGALR--VSegglNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958662872 1423 QAIRAIIKNTdrgALLTTHYMAEAEALCDRVAILVSGRLRCIGS 1466
Cdd:cd03369 166 KTIREEFTNS---TILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1270-1484 |
3.76e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 57.71 E-value: 3.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAG-------QVLLKGSREGDALGfLGYCPQENALWPNLTVK 1342
Cdd:PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGsilylgkEVTFNGPKSSQEAG-IGIIHQELNLIPQLTIA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 EHLEV---FATVLGL---SKSHAAVtiTRLADALQLQDQLKSPVKTLSEGVKR--KLCFVLSIlgNPSILLLDEPSTGLD 1414
Cdd:PRK10762 98 ENIFLgreFVNRFGRidwKKMYAEA--DKLLARLNLRFSSDKLVGELSIGEQQmvEIAKVLSF--ESKVIIMDEPTDALT 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1415 PEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLrcIGsiQHLKSKFGKDYLLEMKV 1484
Cdd:PRK10762 174 DTETESLFRVIRE-LKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF--IA--EREVADLTEDSLIEMMV 238
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
445-626 |
4.36e-08 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 56.34 E-value: 4.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKP-----SKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLS------ 513
Cdd:PRK15112 5 LEVRNLSKTFRYRTgwfrrQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdysy 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 514 EMADLESVFR--ISGVCPQSNV-QFDFLTVRENLRLfakirgvPPQEVEKEVQRVLLELEMKNIQ-DILARNLSGGQKRK 589
Cdd:PRK15112 85 RSQRIRMIFQdpSTSLNPRQRIsQILDFPLRLNTDL-------EPEQREKQIIETLRQVGLLPDHaSYYPHMLAPGQKQR 157
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958662872 590 LTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLE 194
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
446-496 |
4.87e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 57.49 E-value: 4.87e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 446 RIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSG 496
Cdd:NF040905 3 EMRGITKTFPG----VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG 49
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
1272-1466 |
5.41e-08 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 55.19 E-value: 5.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKST---SL-KMISGdtksTAGQVLLKG---SREG--DALGFLGYCPQEnalwPNL--- 1339
Cdd:cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSlllALfRLVEL----SSGSILIDGvdiSKIGlhDLRSRISIIPQD----PVLfsg 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 TVKEHL---------EVFATvlgLSKSHAAVTITRLADalQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:cd03244 93 TIRSNLdpfgeysdeELWQA---LERVGLKEFVESLPG--GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEAT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKntDRGALLTTHYMaEAEALCDRVAILVSGRLRCIGS 1466
Cdd:cd03244 168 ASVDPETDALIQKTIREAFK--DCTVLTIAHRL-DTIIDSDRILVLDKGRVVEFDS 220
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
431-658 |
5.90e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 57.10 E-value: 5.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 431 SFEPVSPEFHGKESIRIRNISKEYKGKpskieaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNN 510
Cdd:PRK09700 252 AMKENVSNLAHETVFEVRNVTSRDRKK------VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGK 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 511 RLSEMADLESVFRISGVCPQS---NVQFDFLTVRENLRLFAKIR--------GVPPQEVEK---EVQRVLLELEMKNI-Q 575
Cdd:PRK09700 326 DISPRSPLDAVKKGMAYITESrrdNGFFPNFSIAQNMAISRSLKdggykgamGLFHEVDEQrtaENQRELLALKCHSVnQ 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 576 DIlaRNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKAD-RVVLFSTQFMDEADILADRKVFIS 654
Cdd:PRK09700 406 NI--TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDgKVILMVSSELPEIITVCDRIAVFC 483
|
....
gi 1958662872 655 RGKL 658
Cdd:PRK09700 484 EGRL 487
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
449-638 |
6.53e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 54.57 E-value: 6.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 449 NISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSV-----TIYNNRLSEMADLESVFR 523
Cdd:PRK13540 6 ELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIlferqSIKKDLCTYQKQLCFVGH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPqsnvqfdFLTVRENLrlfakIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIF 603
Cdd:PRK13540 82 RSGINP-------YLTLRENC-----LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958662872 604 LLDEPTAGLDPFSRHRVWNLLKERKAD--RVVLFSTQ 638
Cdd:PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKggAVLLTSHQ 186
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1273-1446 |
8.80e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 56.56 E-value: 8.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGD-TKSTAGQVLLKGSREG------DALGFLGYCpqENALwpnltvkeHL 1345
Cdd:PRK10938 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDhPQGYSNDLTLFGRRRGsgetiwDIKKHIGYV--SSSL--------HL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 E--VFATVLG--LSKSHAAVTITR-LADALQ-LQDQ-----------LKSPVKTLSEGVKRKLCFVLSILGNPSILLLDE 1408
Cdd:PRK10938 348 DyrVSTSVRNviLSGFFDSIGIYQaVSDRQQkLAQQwldilgidkrtADAPFHSLSWGQQRLALIVRALVKHPTLLILDE 427
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958662872 1409 PSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEA 1446
Cdd:PRK10938 428 PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1273-1461 |
1.05e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 55.14 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG------SREGD------ALGFLGYCPqENALWPNlT 1340
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDtlitstSKNKDikqirkKVGLVFQFP-ESQLFEE-T 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLEVFATVLGLSKSHAaVTITRLADAL-QLQDQL--KSPVKtLSEGVKRKLCfVLSILG-NPSILLLDEPSTGLDPE 1416
Cdd:PRK13649 103 VLKDVAFGPQNFGVSQEEA-EALAREKLALvGISESLfeKNPFE-LSGGQMRRVA-IAGILAmEPKILVLDEPTAGLDPK 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958662872 1417 GQQQIWQairaIIKNTDRGAL---LTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK13649 180 GRKELMT----LFKKLHQSGMtivLVTHLMDDVANYADFVYVLEKGKL 223
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
464-624 |
1.23e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 53.72 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFrisgVCPQSNVQFDfLTVREN 543
Cdd:PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY----IGHNLGLKLE-MTVFEN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 544 LRLFAKIRgvppqeveKEVQRVLLELEMKNIQDILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRV 620
Cdd:PRK13541 91 LKFWSEIY--------NSAETLYAAIHYFKLHDLLDEkcySLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162
|
....
gi 1958662872 621 WNLL 624
Cdd:PRK13541 163 NNLI 166
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1278-1461 |
1.25e-07 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 54.76 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkGSREGDALGFL--------------GYCPQENALWPNLTVKE 1343
Cdd:PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV-GDITIDTARSLsqqkglirqlrqhvGFVFQNFNLFPHRTVLE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1344 H-LEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIW 1422
Cdd:PRK11264 105 NiIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958662872 1423 QAIRAIIKNtDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK11264 185 NTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
445-607 |
1.42e-07 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 56.05 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDL----------------TLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIY 508
Cdd:PRK13545 5 VKFEHVTKKYKMYNKPFDKLKDLffrskdgeyhyalnniSFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 509 NNrlsemADLESVFriSGVCPQsnvqfdfLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKR 588
Cdd:PRK13545 85 GS-----AALIAIS--SGLNGQ-------LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKS 150
|
170
....*....|....*....
gi 1958662872 589 KLTFGTAILGDSQIFLLDE 607
Cdd:PRK13545 151 RLGFAISVHINPDILVIDE 169
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1272-1470 |
1.76e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 56.46 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISgDTKSTAGQVLLKG-SREGDAL----GFLGYCPQENALWPNlTVKEHLE 1346
Cdd:TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGvSWNSVTLqtwrKAFGVIPQKVFIFSG-TFRKNLD 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 VFAtvlglskSHAAVTITRLADALQLQDQLKS-PVK----------TLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDP 1415
Cdd:TIGR01271 1314 PYE-------QWSDEEIWKVAEEVGLKSVIEQfPDKldfvlvdggyVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP 1386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1416 egqqQIWQAIRAIIKNT--DRGALLTTHYMaEAEALCDRVAILVSGRLRCIGSIQHL 1470
Cdd:TIGR01271 1387 ----VTLQIIRKTLKQSfsNCTVILSEHRV-EALLECQQFLVIEGSSVKQYDSIQKL 1438
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
443-630 |
2.07e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 56.19 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 443 ESIRIRNISKEYKGKpSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSV----------------- 505
Cdd:PTZ00265 381 KKIQFKNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIiindshnlkdinlkwwr 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 506 ---------------TIYNN---RLSEMADLESV---FRISGVCPQSNVQF----------DF------LTVRENLRLFA 548
Cdd:PTZ00265 460 skigvvsqdpllfsnSIKNNikySLYSLKDLEALsnyYNEDGNDSQENKNKrnscrakcagDLndmsntTDSNELIEMRK 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 549 KIRGVPPQEVEKEVQRVLLELEMKNIQDIL-------ARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVW 621
Cdd:PTZ00265 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619
|
....*....
gi 1958662872 622 NLLKERKAD 630
Cdd:PTZ00265 620 KTINNLKGN 628
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
455-613 |
2.10e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.71 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 455 KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtiynnRLSEMADLesvfrisGVCPQSNVQ 534
Cdd:TIGR03719 12 KVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEA-----RPQPGIKV-------GYLPQEPQL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 535 FDFLTVRENLRL-FAKIRGV-------------PPQEVEKevqrvLLElEMKNIQDILA--------------------- 579
Cdd:TIGR03719 80 DPTKTVRENVEEgVAEIKDAldrfneisakyaePDADFDK-----LAA-EQAELQEIIDaadawdldsqleiamdalrcp 153
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958662872 580 ------RNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:TIGR03719 154 pwdadvTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
1272-1472 |
2.40e-07 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 54.09 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVllKGSregdalGFLGYCPQENALWPNlTVKEHLeVFATV 1351
Cdd:cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--KHS------GRISFSSQFSWIMPG-TIKENI-IFGVS 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1352 LGLSKSHAAVTITRL-ADALQLQDQLKSPVK----TLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQA-I 1425
Cdd:cd03291 124 YDEYRYKSVVKACQLeEDITKFPEKDNTVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFEScV 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 1426 RAIIKNTDRgaLLTTHYMaEAEALCDRVAILVSGRLRCIGSIQHLKS 1472
Cdd:cd03291 204 CKLMANKTR--ILVTSKM-EHLKKADKILILHEGSSYFYGTFSELQS 247
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1272-1442 |
2.58e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 53.88 E-value: 2.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTKSTAGQVLLKGSregdalGFLGYCPQENAlwpnltvkeHLEVF- 1348
Cdd:CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGE------SILDLEPEERA---------HLGIFl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1349 -----ATVLGLSKSHaavtITRLA-------------DALQ----LQDQLK----SPV---KTLSEGV-----KRKLCFV 1394
Cdd:CHL00131 89 afqypIEIPGVSNAD----FLRLAynskrkfqglpelDPLEfleiINEKLKlvgmDPSflsRNVNEGFsggekKRNEILQ 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958662872 1395 LSILgNPSILLLDEPSTGLDPEGQQQIWQAIRaIIKNTDRGALLTTHY 1442
Cdd:CHL00131 165 MALL-DSELAILDETDSGLDIDALKIIAEGIN-KLMTSENSIILITHY 210
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1272-1473 |
2.93e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 55.69 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVllKGSregdalGFLGYCPQENALWPNlTVKEHLevfatV 1351
Cdd:TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI--KHS------GRISFSPQTSWIMPG-TIKDNI-----I 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1352 LGLskSHAAVTITRLADALQLQDQL-KSPVK----------TLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:TIGR01271 509 FGL--SYDEYRYTSVIKACQLEEDIaLFPEKdktvlgeggiTLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1421 IWQA-IRAIIKNTDRgaLLTTHYMaEAEALCDRVAILVSGRLRCIGSIQHLKSK 1473
Cdd:TIGR01271 587 IFEScLCKLMSNKTR--ILVTSKL-EHLKKADKILLLHEGVCYFYGTFSELQAK 637
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1273-1461 |
4.15e-07 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 52.79 E-value: 4.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-SREGDALGF------LGYCPQENALWPNLTVKEHL 1345
Cdd:PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlKVNDPKVDErlirqeAGMVFQQFYLFPHLTALENV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 eVFA--TVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQ 1423
Cdd:PRK09493 99 -MFGplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958662872 1424 AIRAIiknTDRG--ALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK09493 178 VMQDL---AEEGmtMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1274-1462 |
4.36e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 53.12 E-value: 4.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISgDTKSTAGQVLLKGSREgdalgFLGYC-------------------PQENa 1334
Cdd:PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEVRVEGRVE-----FFNQNiyerrvnlnrlrrqvsmvhPKPN- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1335 LWPnLTVKEHLEVFATVLGLsksHAAVTITRLAD----ALQLQDQLKSPVKT----LSEGVKRKLCFVLSILGNPSILLL 1406
Cdd:PRK14258 99 LFP-MSVYDNVAYGVKIVGW---RPKLEIDDIVEsalkDADLWDEIKHKIHKsaldLSGGQQQRLCIARALAVKPKVLLM 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1407 DEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLR 1462
Cdd:PRK14258 175 DEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENR 230
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
464-630 |
4.39e-07 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 54.43 E-value: 4.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTiynnrlseMADLESVFrisgvcpqsnvqfdFL----- 538
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIA--------RPAGARVL--------------FLpqrpy 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 539 ----TVRENLRLFAKIRGVPPQEVEKEVQRVLLE--LEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGL 612
Cdd:COG4178 437 lplgTLREALLYPATAEAFSDAELREALEAVGLGhlAERLDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSAL 516
|
170
....*....|....*...
gi 1958662872 613 DPFSRHRVWNLLKERKAD 630
Cdd:COG4178 517 DEENEAALYQLLREELPG 534
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1270-1460 |
4.48e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 54.41 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG--DTKSTAGQVLLKGS-------REGDALGFLgYCPQENALWPNLT 1340
Cdd:NF040905 16 ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGvyPHGSYEGEILFDGEvcrfkdiRDSEALGIV-IIHQELALIPYLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1341 VKEHLevFatvLGLSKSHAAV-----TITRLADALQ---LQDQLKSPVKTLseGV-KRKLCFVLSILG-NPSILLLDEPS 1410
Cdd:NF040905 95 IAENI--F---LGNERAKRGVidwneTNRRARELLAkvgLDESPDTLVTDI--GVgKQQLVEIAKALSkDVKLLILDEPT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1411 TGLDPEGQQQIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:NF040905 168 AALNEEDSAALLDLLLE-LKAQGITSIIISHKLNEIRRVADSITVLRDGR 216
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1240-1316 |
4.67e-07 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 53.58 E-value: 4.67e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1240 DEKPVIVASCLRKEYAGKwKHCLSKKKAKI-ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG 1316
Cdd:COG4608 3 MAEPLLEVRDLKKHFPVR-GGLFGRTVGVVkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDG 79
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
1274-1475 |
4.87e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.95 E-value: 4.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregdalgfLGYCPQEnALWPNLTVKEHLeVFATVLG 1353
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--------VAYVPQQ-AWIQNDSLRENI-LFGKALN 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1354 LSKSHAAVTITRLADALQL-----QDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAI--- 1425
Cdd:TIGR00957 727 EKYYQQVLEACALLPDLEIlpsgdRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVigp 806
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1426 RAIIKNTDRgaLLTTHYMAEAEALcDRVAILVSGRLRCIGSIQHLKSKFG 1475
Cdd:TIGR00957 807 EGVLKNKTR--ILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQRDG 853
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
437-636 |
5.35e-07 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 54.33 E-value: 5.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 437 PEFHGKESIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMA 516
Cdd:PRK10789 308 PEGRGELDVNIRQFTYPQTDHP----ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 --DLESVFRISGVCPqsnvqfdFL---TVRENLRLfakirGVP---PQEVEkEVQRvlleleMKNIQDILAR-------- 580
Cdd:PRK10789 384 ldSWRSRLAVVSQTP-------FLfsdTVANNIAL-----GRPdatQQEIE-HVAR------LASVHDDILRlpqgydte 444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 581 ------NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFS 636
Cdd:PRK10789 445 vgergvMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS 506
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1278-1456 |
6.13e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 52.75 E-value: 6.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTKSTAG--------------------QVLLKGSREGDALGFLGycPQENALWP 1337
Cdd:cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGkfddppdwdeildefrgselQNYFTKLLEGDVKVIVK--PQYVDLIP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 NlTVKEHlevfaTVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEG 1417
Cdd:cd03236 101 K-AVKGK-----VGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958662872 1418 QQQIWQAIRAIIKNtDRGALLTTHYMAEAEALCDRVAIL 1456
Cdd:cd03236 175 RLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCL 212
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1268-1478 |
6.68e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 53.94 E-value: 6.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTS----LKMISGDTKST-AGQVLLKGSREgdalGFLGYCPQ--------ENA 1334
Cdd:PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTglalLRLINSQGEIWfDGQPLHNLNRR----QLLPVRHRiqvvfqdpNSS 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1335 LWPNLTV----KEHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKtLSEGVKRKLCFVLSILGNPSILLLDEPS 1410
Cdd:PRK15134 375 LNPRLNVlqiiEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE-FSGGQRQRIAIARALILKPSLIILDEPT 453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1411 TGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDY 1478
Cdd:PRK15134 454 SSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
464-656 |
6.83e-07 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 51.88 E-value: 6.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSG--LSVPTKGSVTIYNNRL-SEMADLESVFRISgvcpqsnvqfDFLTV 540
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGalKGTPVAGCVDVPDNQFgREASLIDAIGRKG----------DFKDA 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 541 RENLRLfAKIRGVppqevekevqrVLLelemkniqdiLAR--NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRH 618
Cdd:COG2401 116 VELLNA-VGLSDA-----------VLW----------LRRfkELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958662872 619 RV-WNLLKE-RKADRVVLFSTQFMD-EADILADRKVFISRG 656
Cdd:COG2401 174 RVaRNLQKLaRRAGITLVVATHHYDvIDDLQPDLLIFVGYG 214
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
448-612 |
8.45e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 53.39 E-value: 8.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 448 RNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGlsVPTKGS-----------VTIYNNRLSEMA 516
Cdd:PRK13549 9 KNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG--VYPHGTyegeiifegeeLQASNIRDTERA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 517 DLESVFRISGVCPQsnvqfdfLTVRENLRLFAKI-RG--VPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKLTFG 593
Cdd:PRK13549 83 GIAIIHQELALVKE-------LSVLENIFLGNEItPGgiMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIA 155
|
170
....*....|....*....
gi 1958662872 594 TAILGDSQIFLLDEPTAGL 612
Cdd:PRK13549 156 KALNKQARLLILDEPTASL 174
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
357-638 |
8.77e-07 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 52.78 E-value: 8.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 357 AGSSNLIAATNFMLAFDALLYLALTMYFEKVLPNEYGHQRSPLFFLKPS-FWVQPRKPAHVILEDGIDPAPLSGGSFEPV 435
Cdd:pfam13304 10 SGKSNLLEALRFLADFDALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIeFEISEFLEDGVRYRYGLDLEREDVEEKLSS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 436 SPEFHGKESIRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKgsvTIYNNRLSEM 515
Cdd:pfam13304 90 KPTLLEKRLLLREDSEEREPKFPPEAEELRLGLDVEERIELSLSELSDLISGLLLLSIISPLSFLLL---LDEGLLLEDW 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 516 ADLESVFRISGvcPQSNVQFDFLTVRENLRLFAKIRGVPPQEVEK------EVQRVLLELEMKNIQDILARNLSGGQKRK 589
Cdd:pfam13304 167 AVLDLAADLAL--FPDLKELLQRLVRGLKLADLNLSDLGEGIEKSllvddrLRERGLILLENGGGGELPAFELSDGTKRL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 590 LTFGTAILGDSQ---IFLLDEPTAGLDPFSRHRVWNLLKERKADRV-VLFSTQ 638
Cdd:pfam13304 245 LALLAALLSALPkggLLLIDEPESGLHPKLLRRLLELLKELSRNGAqLILTTH 297
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1270-1461 |
9.78e-07 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 53.53 E-value: 9.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTS----LKMISGDTKSTAGQVLLKGsRE-------------GDALG--Flgycp 1330
Cdd:COG4172 25 AVKGVSFDIAAGETLALVGESGSGKSVTalsiLRLLPDPAAHPSGSILFDG-QDllglserelrrirGNRIAmiF----- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1331 QE--NALWPNLTVKEHL-EVFATVLGLSKSHAavtitrLADALQLQDQ--LKSPVK-------TLSEGVKRKLCFVLSIL 1398
Cdd:COG4172 99 QEpmTSLNPLHTIGKQIaEVLRLHRGLSGAAA------RARALELLERvgIPDPERrldayphQLSGGQRQRVMIAMALA 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1399 GNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG4172 173 NEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEI 235
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
444-663 |
1.03e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 53.97 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKG-KPSkieaLKDLTLDIYEGQITALLGHSGAGKSTLLNILSGlsvptkgsvtiynnRLSEMADLESVF 522
Cdd:PLN03130 616 SIKNGYFSWDSKAeRPT----LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG--------------ELPPRSDASVVI 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RIS-GVCPQSNVQFDfLTVRENLrLFakirGVP--PQEVEKEV-----QRVLLELEMKNIQDILAR--NLSGGQKRKLTF 592
Cdd:PLN03130 678 RGTvAYVPQVSWIFN-ATVRDNI-LF----GSPfdPERYERAIdvtalQHDLDLLPGGDLTEIGERgvNISGGQKQRVSM 751
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 593 GTAILGDSQIFLLDEPTAGLDPFSRHRVWN--LLKERKADRVVLFSTQ--FMDEadilADRKVFISRGKLKCAGS 663
Cdd:PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDkcIKDELRGKTRVLVTNQlhFLSQ----VDRIILVHEGMIKEEGT 822
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
434-613 |
1.06e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 53.40 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 434 PVSPEFhGKESIRIRNISKEYKGKPskieALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynnrlS 513
Cdd:TIGR03719 313 PPGPRL-GDKVIEAENLTKAFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-----G 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 514 EMADLESVfrisgvcPQSnvqfdfltvRENLRlfakirgvPPQEVEKEVQRVLLELEMKNI-----------------QD 576
Cdd:TIGR03719 383 ETVKLAYV-------DQS---------RDALD--------PNKTVWEEISGGLDIIKLGKReipsrayvgrfnfkgsdQQ 438
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958662872 577 ILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:TIGR03719 439 KKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1272-1343 |
1.17e-06 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 51.62 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-------SRE-GDALGFLgycPQENALWPNLTVKE 1343
Cdd:COG4604 18 DDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGldvattpSRElAKRLAIL---RQENHINSRLTVRE 94
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
445-613 |
1.45e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 53.41 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRI 524
Cdd:TIGR00957 1285 VEFRNYCLRYR--EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 525 SgVCPQSNVQFDFlTVRENLRLFAkirgvppQEVEKEVqrvLLELEMKNIQDILA--------------RNLSGGQKRKL 590
Cdd:TIGR00957 1363 T-IIPQDPVLFSG-SLRMNLDPFS-------QYSDEEV---WWALELAHLKTFVSalpdkldhecaeggENLSVGQRQLV 1430
|
170 180
....*....|....*....|...
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLD 613
Cdd:TIGR00957 1431 CLARALLRKTKILVLDEATAAVD 1453
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1268-1416 |
1.56e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.03 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVllkgsREGDALGfLGYCPQENA-LWPNLTVKEHL- 1345
Cdd:PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-----HCGTKLE-VAYFDQHRAeLDPEKTVMDNLa 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1346 ----EVfaTVLGLSKsHAavtitrLAdalQLQDQL------KSPVKTLSEGVKRKLcFVLSILGNPSILL-LDEPSTGLD 1414
Cdd:PRK11147 406 egkqEV--MVNGRPR-HV------LG---YLQDFLfhpkraMTPVKALSGGERNRL-LLARLFLKPSNLLiLDEPTNDLD 472
|
..
gi 1958662872 1415 PE 1416
Cdd:PRK11147 473 VE 474
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
1272-1475 |
3.75e-06 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 51.65 E-value: 3.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGS-----------REGDALGflgycpQENALWP--- 1337
Cdd:TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVplvqydhhylhRQVALVG------QEPVLFSgsv 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1338 ------NLTVKEHLEVFATVlglSKSHAAVTITRLADALQLQDQLKSpvKTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:TIGR00958 572 reniayGLTDTPDEEIMAAA---KAANAHDFIMEFPNGYDTEVGEKG--SQLSGGQKQRIAIARALVRKPRVLILDEATS 646
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1412 GLDPEGQQQIWQAiraiIKNTDRGALLTTHYMAEAEAlCDRVAILVSGRLRCIGSIQHLKSKFG 1475
Cdd:TIGR00958 647 ALDAECEQLLQES----RSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQG 705
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
464-613 |
4.61e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 51.32 E-value: 4.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTiynnrLSEMADLesvfrisGVCPQSnvQFDFLTVREN 543
Cdd:PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG-----LAKGIKL-------GYFAQH--QLEFLRADES 393
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 544 -LRLFAKIrgvPPQEVEKEVQRVL--LELEMKNIQDILARnLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PRK10636 394 pLQHLARL---APQELEQKLRDYLggFGFQGDKVTEETRR-FSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1270-1316 |
4.63e-06 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 50.17 E-value: 4.63e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG 1316
Cdd:PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD 74
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1268-1418 |
4.64e-06 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 49.98 E-value: 4.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-------SRE-GDALGFLGycpqENALWP-N 1338
Cdd:PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGehiqhyaSKEvARRIGLLA----QNATTPgD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1339 LTVKE--------HLEVFA-----TVLGLSKSHAAVTITRLADalqlqdqlkSPVKTLSEGVKRKLCFVLSILGNPSILL 1405
Cdd:PRK10253 96 ITVQElvargrypHQPLFTrwrkeDEEAVTKAMQATGITHLAD---------QSVDTLSGGQRQRAWIAMVLAQETAIML 166
|
170
....*....|...
gi 1958662872 1406 LDEPSTGLDPEGQ 1418
Cdd:PRK10253 167 LDEPTTWLDISHQ 179
|
|
| RsgA |
COG1162 |
Ribosome biogenesis GTPase RsgA [Translation, ribosomal structure and biogenesis]; |
461-496 |
4.83e-06 |
|
Ribosome biogenesis GTPase RsgA [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440776 [Multi-domain] Cd Length: 300 Bit Score: 50.11 E-value: 4.83e-06
10 20 30
....*....|....*....|....*....|....*.
gi 1958662872 461 IEALKDLtLdiyEGQITALLGHSGAGKSTLLNILSG 496
Cdd:COG1162 157 LDELREL-L---KGKTSVLVGQSGVGKSTLINALLP 188
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1273-1416 |
4.90e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 51.27 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLkgsreGDALGfLGYCPQE-NALWPNLTVKEhlevfatv 1351
Cdd:PRK11819 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-----GETVK-LAYVDQSrDALDPNKTVWE-------- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1352 lglskshaavTITRLADALQL------------------QDQLKsPVKTLSEGVKRK--LCFVLSILGNpsILLLDEPST 1411
Cdd:PRK11819 408 ----------EISGGLDIIKVgnreipsrayvgrfnfkgGDQQK-KVGVLSGGERNRlhLAKTLKQGGN--VLLLDEPTN 474
|
....*
gi 1958662872 1412 GLDPE 1416
Cdd:PRK11819 475 DLDVE 479
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
447-612 |
4.93e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.88 E-value: 4.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 447 IRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYN---NRLSEMADLESvfR 523
Cdd:PRK10982 1 MSNISKSFPG----VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGkeiDFKSSKEALEN--G 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 524 ISGVCPQSNvQFDFLTVRENL---RLFAKIRGVPPQEVEKEVQRVLLELEMkniqDILAR----NLSGGQKRKLTFGTAI 596
Cdd:PRK10982 75 ISMVHQELN-LVLQRSVMDNMwlgRYPTKGMFVDQDKMYRDTKAIFDELDI----DIDPRakvaTLSVSQMQMIEIAKAF 149
|
170
....*....|....*.
gi 1958662872 597 LGDSQIFLLDEPTAGL 612
Cdd:PRK10982 150 SYNAKIVIMDEPTSSL 165
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
417-658 |
5.52e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.88 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 417 ILEDG--IDPAPLSGGSFEPVSPEFHGKE---------------SIRIRNISKeyKGKPSkieaLKDLTLDIYEGQITAL 479
Cdd:PRK10982 206 ILRDGqwIATQPLAGLTMDKIIAMMVGRSltqrfpdkenkpgevILEVRNLTS--LRQPS----IRDVSFDLHKGEILGI 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 480 LGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESV---F-------RISGVcpQSNVQFDFLTVRENLRLF-A 548
Cdd:PRK10982 280 AGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAInhgFalvteerRSTGI--YAYLDIGFNSLISNIRNYkN 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 549 KIRGVPPQEVEKEVQRVLLELEMKN-IQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE- 626
Cdd:PRK10982 358 KVGLLDNSRMKSDTQWVIDSMRVKTpGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEl 437
|
250 260 270
....*....|....*....|....*....|...
gi 1958662872 627 -RKADRVVLFSTQfMDEADILADRKVFISRGKL 658
Cdd:PRK10982 438 aKKDKGIIIISSE-MPELLGITDRILVMSNGLV 469
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1268-1461 |
6.53e-06 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 50.61 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTaGQVLLKGS--REGD------ALGFLGYCPQ-------E 1332
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GSLKINGIelRELDpeswrkHLSWVGQNPQlphgtlrD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 NAL--WPNLTVKEHLEVfatvlgLSKSHAAVTITRLADAL--QLQDQlkspVKTLSEGVKRKLCFVLSILGNPSILLLDE 1408
Cdd:PRK11174 442 NVLlgNPDASDEQLQQA------LENAWVSEFLPLLPQGLdtPIGDQ----AAGLSVGQAQRLALARALLQPCQLLLLDE 511
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1409 PSTGLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAEAlCDRVAILVSGRL 1461
Cdd:PRK11174 512 PTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQ-WDQIWVMQDGQI 561
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
461-496 |
7.68e-06 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 48.55 E-value: 7.68e-06
10 20 30
....*....|....*....|....*....|....*.
gi 1958662872 461 IEALKDLtLdiyEGQITALLGHSGAGKSTLLNILSG 496
Cdd:cd01854 76 LDELREL-L---KGKTSVLVGQSGVGKSTLLNALLP 107
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
445-637 |
7.98e-06 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 50.45 E-value: 7.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGKPSKIEALKDLTLDIYEGQITALLGHSGAGKS-TLLNIL----SGLSVPTkGSVTiYNNR----LSEm 515
Cdd:COG4172 7 LSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSILrllpDPAAHPS-GSIL-FDGQdllgLSE- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 516 ADLESV--FRISGVcpqsnvqfdF----------LTV----RENLRLfakIRGVPPQEVEKEVQRVLLELEMKNIQDILA 579
Cdd:COG4172 84 RELRRIrgNRIAMI---------FqepmtslnplHTIgkqiAEVLRL---HRGLSGAAARARALELLERVGIPDPERRLD 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 580 R---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADR--VVLFST 637
Cdd:COG4172 152 AyphQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELgmALLLIT 214
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
445-626 |
9.55e-06 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 50.07 E-value: 9.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGK-------PSKIEALKDLTLDIYEGQITALLGHSGAGKSTL-LNILsGLsVPTKGSVTIYNNRLSEM- 515
Cdd:COG4172 276 LEARDLKVWFPIKrglfrrtVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLgLALL-RL-IPSEGEIRFDGQDLDGLs 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 516 --------ADLESVFrisgvcpqsnvQFDF------LTVR----ENLRLFAkiRGVPPQEVEKEVQRVLLELEMKniQDI 577
Cdd:COG4172 354 rralrplrRRMQVVF-----------QDPFgslsprMTVGqiiaEGLRVHG--PGLSAAERRARVAEALEEVGLD--PAA 418
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 578 LAR---NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE 626
Cdd:COG4172 419 RHRyphEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRD 470
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1270-1460 |
1.25e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 49.03 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKS----TAGQV------LLKGS-RE-----GDALGFLGYCPQeN 1333
Cdd:PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDnwrvTADRMrfddidLLRLSpRErrklvGHNVSMIFQEPQ-S 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1334 ALWPNLTVKEHLevFATVLGLS-KSHAAVTIT-RLADALQL---------QDQLKSPVKTLSEGVKRKLCFVLSILGNPS 1402
Cdd:PRK15093 101 CLDPSERVGRQL--MQNIPGWTyKGRWWQRFGwRKRRAIELlhrvgikdhKDAMRSFPYELTEGECQKVMIAIALANQPR 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1403 ILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:PRK15093 179 LLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1272-1441 |
1.60e-05 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 49.72 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSR----EGDALGFL-----GYCPQENALWPNLTVK 1342
Cdd:PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDvatlDADALAQLrrehfGFIFQRYHLLSHLTAA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 EHLEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQiw 1422
Cdd:PRK10535 105 QNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE-- 182
|
170 180
....*....|....*....|..
gi 1958662872 1423 qaIRAIIKN-TDRG--ALLTTH 1441
Cdd:PRK10535 183 --VMAILHQlRDRGhtVIIVTH 202
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
464-613 |
1.63e-05 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.91 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTiYNNRLSemadlesvfrisgVCPqsnvQFDFL---TV 540
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK-HSGRIS-------------FSP----QTSWImpgTI 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 541 RENLrlfakIRGVPPQE-----VEKEVQrvlLELEMKNIQD----ILAR---NLSGGQKRKLTFGTAILGDSQIFLLDEP 608
Cdd:TIGR01271 504 KDNI-----IFGLSYDEyrytsVIKACQ---LEEDIALFPEkdktVLGEggiTLSGGQRARISLARAVYKDADLYLLDSP 575
|
....*
gi 1958662872 609 TAGLD 613
Cdd:TIGR01271 576 FTHLD 580
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
1268-1466 |
1.67e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 49.78 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSregdalgfLGYCPQEnALWPNLTVKEHLeV 1347
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS--------IAYVPQQ-AWIMNATVRGNI-L 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1348 FATVLGLSKSHAAVTITRL-ADALQLQDQLKSPVK----TLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPE-GQQQI 1421
Cdd:PTZ00243 743 FFDEEDAARLADAVRVSQLeADLAQLGGGLETEIGekgvNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHvGERVV 822
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958662872 1422 WQAIRAIIKNTDRgaLLTTHYMaEAEALCDRVAILVSGRLRCIGS 1466
Cdd:PTZ00243 823 EECFLGALAGKTR--VLATHQV-HVVPRADYVVALGDGRVEFSGS 864
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
1383-1441 |
1.77e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 48.54 E-value: 1.77e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 1383 LSEGVKRKLCFVLSIL---GNPSILLLDEPSTGLDPEGQQQIWQAIRaIIKNTDRGALLTTH 1441
Cdd:pfam13304 237 LSDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLK-ELSRNGAQLILTTH 297
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1270-1461 |
2.13e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 48.58 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISG----------DTKSTAGQVLLKGSRE------GDALGFLGYCPQeN 1333
Cdd:PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGlidypgrvmaEKLEFNGQDLQRISEKerrnlvGAEVAMIFQDPM-T 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1334 ALWPNLTVK-EHLEVFATVLGLSKShaavtiTRLADALQLQDQLKSPVKT---------LSEGVKRKLCFVLSILGNPSI 1403
Cdd:PRK11022 101 SLNPCYTVGfQIMEAIKVHQGGNKK------TRRQRAIDLLNQVGIPDPAsrldvyphqLSGGMSQRVMIAMAIACRPKL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 1404 LLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:PRK11022 175 LIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
|
| RsgA_GTPase |
pfam03193 |
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ... |
461-511 |
3.13e-05 |
|
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.
Pssm-ID: 427191 [Multi-domain] Cd Length: 174 Bit Score: 46.00 E-value: 3.13e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1958662872 461 IEALKDLtldiYEGQITALLGHSGAGKSTLLN-ILSGLSVPTkGSVTIYNNR 511
Cdd:pfam03193 97 IEALKEL----LKGKTTVLAGQSGVGKSTLLNaLLPELDLRT-GEISEKLGR 143
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
445-657 |
3.14e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 48.28 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 445 IRIRNISKEYKGkpskIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIY---------NNRLSEM 515
Cdd:TIGR02633 2 LEMKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYwsgsplkasNIRDTER 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 516 ADLESVFRISGVCPQsnvqfdfLTVRENLRLFAKI----RGVPPQEVEKEVQRVLLELEMKNIQDILA-RNLSGGQKRKL 590
Cdd:TIGR02633 78 AGIVIIHQELTLVPE-------LSVAENIFLGNEItlpgGRMAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLV 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958662872 591 TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVV-LFSTQFMDEADILADRKVFISRGK 657
Cdd:TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAcVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
448-613 |
4.48e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 48.19 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 448 RNISKEYkgkPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVtiynnRLSEMAdleSVfrisGV 527
Cdd:PRK11819 10 NRVSKVV---PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-----RPAPGI---KV----GY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 528 CPQSNVQFDFLTVRENLR-----LFAKIR---------GVPPQEVEKevqrvLLElEMKNIQDILA-------------- 579
Cdd:PRK11819 75 LPQEPQLDPEKTVRENVEegvaeVKAALDrfneiyaayAEPDADFDA-----LAA-EQGELQEIIDaadawdldsqleia 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958662872 580 -------------RNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLD 613
Cdd:PRK11819 149 mdalrcppwdakvTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
443-632 |
7.53e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 45.68 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 443 ESIRIRNISKEYKgkPSKIEalkdltldiYEGQITALLGHSGAGKSTllnILSGLSVPTKGSVTiynNRLSEMADLESVF 522
Cdd:cd03240 2 DKLSIRNIRSFHE--RSEIE---------FFSPLTLIVGQNGAGKTT---IIEALKYALTGELP---PNSKGGAHDPKLI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 523 RISGVCPQSNVQF-----DFLTVRENLRLFAKIRGVPPQEVEKevqrvLLELEMKniqdilarNLSGGQKRKL------- 590
Cdd:cd03240 65 REGEVRAQVKLAFenangKKYTITRSLAILENVIFCHQGESNW-----PLLDMRG--------RCSGGEKVLAsliirla 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958662872 591 ---TFGtailGDSQIFLLDEPTAGLDPFSR-HRVWNLLKERKADRV 632
Cdd:cd03240 132 laeTFG----SNCGILALDEPTTNLDEENIeESLAEIIEERKSQKN 173
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1272-1432 |
8.06e-05 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 47.11 E-value: 8.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEilGLL--GHNGAGKSTSLKMISGDTKSTAGQVLLKgsrEGDALGFLgycPQENALwPNLTVKEhlevfa 1349
Cdd:COG4178 380 EDLSLSLKPGE--RLLitGPSGSGKSTLLRAIAGLWPYGSGRIARP---AGARVLFL---PQRPYL-PLGTLRE------ 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1350 tVLGLSKSHAAVTITRLADALQ------LQDQLKSPV---KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:COG4178 445 -ALLYPATAEAFSDAELREALEavglghLAERLDEEAdwdQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAA 523
|
170
....*....|..
gi 1958662872 1421 IWQAIRAIIKNT 1432
Cdd:COG4178 524 LYQLLREELPGT 535
|
|
| PRK00098 |
PRK00098 |
GTPase RsgA; Reviewed |
461-501 |
8.97e-05 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234631 [Multi-domain] Cd Length: 298 Bit Score: 46.35 E-value: 8.97e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1958662872 461 IEALKDLTldiyEGQITALLGHSGAGKSTLLN-ILSGLSVPT 501
Cdd:PRK00098 155 LDELKPLL----AGKVTVLAGQSGVGKSTLLNaLAPDLELKT 192
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
442-634 |
1.01e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 47.33 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 442 KESIRIRNISKEYKGKPSkIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGL------------------------ 497
Cdd:PTZ00265 1163 KGKIEIMDVNFRYISRPN-VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFydlkndhhivfknehtndmtneqd 1241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 498 -------SVPTKGSVTIYNNRLSEMADLESVFRISG--------VCPQS--NVQFDFLTVRE-----NLRLFAKIRGVPP 555
Cdd:PTZ00265 1242 yqgdeeqNVGMKNVNEFSLTKEGGSGEDSTVFKNSGkilldgvdICDYNlkDLRNLFSIVSQepmlfNMSIYENIKFGKE 1321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 556 QEVEKEVQRV--------LLElEMKNIQDI----LARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNL 623
Cdd:PTZ00265 1322 DATREDVKRAckfaaideFIE-SLPNKYDTnvgpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400
|
250
....*....|...
gi 1958662872 624 LKE--RKADRVVL 634
Cdd:PTZ00265 1401 IVDikDKADKTII 1413
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
464-629 |
1.02e-04 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 44.45 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIynnrlsemadlesvfrisgvCPQSNVQFdfltvren 543
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM--------------------PEGEDLLF-------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 544 lrlfakirgVPpqevekevQRVLLELemKNIQDILA----RNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHR 619
Cdd:cd03223 69 ---------LP--------QRPYLPL--GTLREQLIypwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129
|
170
....*....|
gi 1958662872 620 VWNLLKERKA 629
Cdd:cd03223 130 LYQLLKELGI 139
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
1269-1454 |
1.15e-04 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 45.54 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1269 IATRNVSFCVRKGEILGLLGHNGAGKSTSLK-------MISGdtKSTAGQVLLKGS----REGDALGF---LGYCPQENA 1334
Cdd:PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRcfnrlndLIPG--FRVEGKVTFHGKnlyaPDVDPVEVrrrIGMVFQKPN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1335 LWPNlTVKEHLEVFATVLGLSKSHAAVTITRLADAL---QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPST 1411
Cdd:PRK14243 102 PFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAAlwdEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 1412 GLDPEGQQQIWQAIRAIIKntDRGALLTTHYMAEAEALCDRVA 1454
Cdd:PRK14243 181 ALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTA 221
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1279-1431 |
1.17e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 46.70 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1279 RKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSRE-------GDALG--FLG---------YCPQENALWPNL- 1339
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEPSWDevlkrfrGTELQdyFKKlangeikvaHKPQYVDLIPKVf 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1340 --TVKEHLEvfatvlglsKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDpeg 1417
Cdd:COG1245 177 kgTVRELLE---------KVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLD--- 244
|
170
....*....|....*.
gi 1958662872 1418 qqqIWQAIRA--IIKN 1431
Cdd:COG1245 245 ---IYQRLNVarLIRE 257
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
463-625 |
1.21e-04 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 46.62 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 463 ALKDLTLDIYEGQITALLGHSGAGKSTllnilSGLS----VPTKGSVT-----IYNNRLSEMADLES----VFR--ISGV 527
Cdd:PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKST-----TGLAllrlINSQGEIWfdgqpLHNLNRRQLLPVRHriqvVFQdpNSSL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 528 CPQSNVQfdfLTVRENLRLFAKIrgVPPQEVEKEVQRVLLELEMkniqDILARN-----LSGGQKRKLTFGTAILGDSQI 602
Cdd:PRK15134 376 NPRLNVL---QIIEEGLRVHQPT--LSAAQREQQVIAVMEEVGL----DPETRHrypaeFSGGQRQRIAIARALILKPSL 446
|
170 180
....*....|....*....|...
gi 1958662872 603 FLLDEPTAGLDPFSRHRVWNLLK 625
Cdd:PRK15134 447 IILDEPTSSLDKTVQAQILALLK 469
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1268-1461 |
1.49e-04 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 45.41 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1268 KIATRNVSFCVRKGEILGLLGHNGAGKSTSLK-------MISGDTksTAGQVLLKG----SREGDALGF---LGYCPQEn 1333
Cdd:COG1117 24 KQALKDINLDIPENKVTALIGPSGCGKSTLLRclnrmndLIPGAR--VEGEILLDGediyDPDVDVVELrrrVGMVFQK- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1334 alwPNLtvkehlevFAT------VLGL------SKSHAAVTITRladALQ-------LQDQLKSPVKTLSEGVKRKLCFV 1394
Cdd:COG1117 101 ---PNP--------FPKsiydnvAYGLrlhgikSKSELDEIVEE---SLRkaalwdeVKDRLKKSALGLSGGQQQRLCIA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958662872 1395 LSILGNPSILLLDEPSTGLDPEGQQQIWQAIR------AIIkntdrgalLTTHYMAEAEALCDRVAILVSGRL 1461
Cdd:COG1117 167 RALAVEPEVLLMDEPTSALDPISTAKIEELILelkkdyTIV--------IVTHNMQQAARVSDYTAFFYLGEL 231
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1273-1473 |
1.62e-04 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 45.67 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKS----TA------GQVLLKGSRE------GDALGFLGYCPQENaLW 1336
Cdd:COG4170 25 RVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTAdrfrwnGIDLLKLSPRerrkiiGREIAMIFQEPSSC-LD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1337 PNLTVKEHLE--VFATVLGLSKSHAAVTITRLADAL-------QLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLD 1407
Cdd:COG4170 104 PSAKIGDQLIeaIPSWTFKGKWWQRFKWRKKRAIELlhrvgikDHKDIMNSYPHELTEGECQKVMIAMAIANQPRLLIAD 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1408 EPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSK 1473
Cdd:COG4170 184 EPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKS 249
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
460-624 |
2.06e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 46.00 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 460 KIEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMAD--LESVFRisgvcpqsNVQFDF 537
Cdd:PRK10261 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPgkLQALRR--------DIQFIF 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 538 --------------LTVRENLRLFAKIRGvppqevEKEVQRVLLELEMKNIQDILA----RNLSGGQKRKLTFGTAILGD 599
Cdd:PRK10261 408 qdpyasldprqtvgDSIMEPLRVHGLLPG------KAAAARVAWLLERVGLLPEHAwrypHEFSGGQRQRICIARALALN 481
|
170 180
....*....|....*....|....*
gi 1958662872 600 SQIFLLDEPTAGLDPFSRHRVWNLL 624
Cdd:PRK10261 482 PKVIIADEAVSALDVSIRGQIINLL 506
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
444-613 |
2.07e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 44.78 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 444 SIRIRNISKEYKgkpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLS--VPTKGSVTIYNNRLSEMADL--- 518
Cdd:PRK09580 3 SIKDLHVSVEDK------AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPEdra 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 519 -ESVF-------RISGVCPQSNVQFDFLTVRenlrlfaKIRGVPPQE-------VEKEVQrvLLELEmkniQDILARNL- 582
Cdd:PRK09580 77 gEGIFmafqypvEIPGVSNQFFLQTALNAVR-------SYRGQEPLDrfdfqdlMEEKIA--LLKMP----EDLLTRSVn 143
|
170 180 190
....*....|....*....|....*....|....*
gi 1958662872 583 ---SGGQ-KRKLTFGTAILgDSQIFLLDEPTAGLD 613
Cdd:PRK09580 144 vgfSGGEkKRNDILQMAVL-EPELCILDESDSGLD 177
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
1274-1408 |
3.01e-04 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 45.17 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDAlgflgycpqenalwpnlTVKEHLEVFATV-- 1351
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTAD-----------------NREAYRQLFSAVfs 413
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1352 --------LGLSKSHAAVTITRLADALQLQDQLK------SPVKtLSEGVKRKLCFVLSILGNPSILLLDE 1408
Cdd:COG4615 414 dfhlfdrlLGLDGEADPARARELLERLELDHKVSvedgrfSTTD-LSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1274-1473 |
3.25e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 45.74 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1274 VSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG---SREG--DALGFLGYCPQENALWPNlTVKEHLEVF 1348
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDcdvAKFGltDLRRVLSIIPQSPVLFSG-TVRFNIDPF 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1349 AT------VLGLSKSHAAVTITRlaDALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIW 1422
Cdd:PLN03232 1334 SEhndadlWEALERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958662872 1423 QAIRAIIKNTdrgALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSK 1473
Cdd:PLN03232 1412 RTIREEFKSC---TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1240-1318 |
3.56e-04 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 45.06 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1240 DEKPVIVASCLRKEYAGKwKHCLSKKKAKI-ATRNVSFCVRKGEILGLLGHNGAGKSTS----LKMIsgdtkSTAGQVLL 1314
Cdd:COG4172 271 DAPPLLEARDLKVWFPIK-RGLFRRTVGHVkAVDGVSLTLRRGETLGLVGESGSGKSTLglalLRLI-----PSEGEIRF 344
|
....
gi 1958662872 1315 KGSR 1318
Cdd:COG4172 345 DGQD 348
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1270-1460 |
4.09e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 44.72 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1270 ATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-------SREGDALGfLGYCPQENALWPNLTVK 1342
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGkeidfksSKEALENG-ISMVHQELNLVLQRSVM 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1343 EHLEVFATVL-GLSKSHAAV--TITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQ 1419
Cdd:PRK10982 92 DNMWLGRYPTkGMFVDQDKMyrDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958662872 1420 QIWQAIRAiIKNTDRGALLTTHYMAEAEALCDRVAILVSGR 1460
Cdd:PRK10982 172 HLFTIIRK-LKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1283-1467 |
4.60e-04 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 44.48 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1283 ILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG-----SREGDALG----FLGYCPQENALWPNLTVKEHLEvfatvLG 1353
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlfdAEKGICLPpekrRIGYVFQDARLFPHYKVRGNLR-----YG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1354 LSKSHAAV--TITRLadaLQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLD-PEGQ------QQIWQA 1424
Cdd:PRK11144 101 MAKSMVAQfdKIVAL---LGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDlPRKRellpylERLARE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958662872 1425 IRAIIkntdrgaLLTTHYMAEAEALCDRVAILVSGRLRCIGSI 1467
Cdd:PRK11144 178 INIPI-------LYVSHSLDEILRLADRVVVLEQGKVKAFGPL 213
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1278-1306 |
4.69e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 44.80 E-value: 4.69e-04
10 20
....*....|....*....|....*....
gi 1958662872 1278 VRKGEILGLLGHNGAGKSTSLKMISGDTK 1306
Cdd:PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
582-648 |
5.23e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 42.35 E-value: 5.23e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958662872 582 LSGGQKRKLT----FGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE-RKADRVVLFST---QFMDEADILAD 648
Cdd:cd03227 78 LSGGEKELSAlaliLALASLKPRPLYILDEIDRGLDPRDGQALAEAILEhLVKGAQVIVIThlpELAELADKLIH 152
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1273-1414 |
6.10e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.50 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1273 NVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLL-KGSREG----DALGFLGY---------------CPQE 1332
Cdd:PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLdPNERLGklrqDQFAFEEFtvldtvimghtelweVKQE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1333 -NALWPNLTVKE-------HLEV-FATVLGLS-KSHAAVTITRLADALQLQDQLKSPVktlSEGVKRKLCFVLSILGNPS 1402
Cdd:PRK15064 99 rDRIYALPEMSEedgmkvaDLEVkFAEMDGYTaEARAGELLLGVGIPEEQHYGLMSEV---APGWKLRVLLAQALFSNPD 175
|
170
....*....|..
gi 1958662872 1403 ILLLDEPSTGLD 1414
Cdd:PRK15064 176 ILLLDEPTNNLD 187
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
568-659 |
9.62e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 43.76 E-value: 9.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 568 ELEMKNIQDILAR-------------NLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE--RKADRV 632
Cdd:PRK13549 379 AAELKTILESIQRlkvktaspelaiaRLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQlvQQGVAI 458
|
90 100
....*....|....*....|....*..
gi 1958662872 633 VLFSTQfMDEADILADRKVFISRGKLK 659
Cdd:PRK13549 459 IVISSE-LPEVLGLSDRVLVMHEGKLK 484
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
434-507 |
1.22e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 43.57 E-value: 1.22e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 434 PVSPEFhGKESIRIRNISKEYKGKpskiEALKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLSVPTKGSVTI 507
Cdd:PRK11819 315 PPGPRL-GDKVIEAENLSKSFGDR----LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
1272-1426 |
1.43e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 43.40 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1272 RNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDA----LGF-LGYCPQENALWPNlTVKEHLE 1346
Cdd:TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIglhdLRFkITIIPQDPVLFSG-SLRMNLD 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1347 VFATV------LGLSKSHAAVTITRLADalQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:TIGR00957 1382 PFSQYsdeevwWALELAHLKTFVSALPD--KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNL 1459
|
....*.
gi 1958662872 1421 IWQAIR 1426
Cdd:TIGR00957 1460 IQSTIR 1465
|
|
| NosY |
COG1277 |
ABC-type transport system involved in multi-copper enzyme maturation, permease component ... |
229-314 |
1.69e-03 |
|
ABC-type transport system involved in multi-copper enzyme maturation, permease component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440888 [Multi-domain] Cd Length: 201 Bit Score: 41.34 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 229 AFWLSWGLLYAgFVFVMALSLALVIKSVQFLILTSFTVVFSLFLLYGLSMISLAFLMSVLVRKSVLT-GLTVFLLTIFWG 307
Cdd:COG1277 102 GALLVLLLALL-ITFLLALLLGLLLFGSPPPDLGAILGFYLGLLLLGLAFLAIGLFISALTRNQIVAaILAIALWLLLVI 180
|
....*..
gi 1958662872 308 SLGFTAL 314
Cdd:COG1277 181 LLAWIVL 187
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
441-492 |
1.98e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 43.08 E-value: 1.98e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 441 GKESIRI----RNISKEY-KGKPSKIEALKDLTLDIYEGQITALLGHSGAGKSTLLN 492
Cdd:TIGR00630 596 GRKKIEVpaerRPGNGKFlTLKGARENNLKNITVSIPLGLFTCITGVSGSGKSTLIN 652
|
|
| PRK01889 |
PRK01889 |
GTPase RsgA; Reviewed |
473-505 |
2.63e-03 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234988 [Multi-domain] Cd Length: 356 Bit Score: 41.84 E-value: 2.63e-03
10 20 30
....*....|....*....|....*....|...
gi 1958662872 473 EGQITALLGHSGAGKSTLLNILSGLSVPTKGSV 505
Cdd:PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1381-1444 |
2.82e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 42.71 E-value: 2.82e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1381 KTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMA 1444
Cdd:PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420
|
|
| ABC2_membrane |
pfam01061 |
ABC-2 type transporter; |
973-1114 |
2.96e-03 |
|
ABC-2 type transporter;
Pssm-ID: 426023 [Multi-domain] Cd Length: 204 Bit Score: 40.72 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 973 STYFVDEITNPLQQLGKTTFWLTLTSACPPYIAMSSVTDYKNKVWFQLRVSGLF-PSAYWFGQALVDIPLYCF-VFLFMS 1050
Cdd:pfam01061 32 TLFGNLGNQQGGLNRPGLLFFSILFNAFSALSGISPVFEKERGVLYRELASPLYsPSAYVLAKILSELPLSLLqSLIFLL 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1051 LMDYLLGFPdatLIVITHVLQIPCSVGYAISLIFLTYVISFISRKGKKNSGIWSLCFYIITMFS 1114
Cdd:pfam01061 112 IVYFMVGLP---PSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS 172
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
474-656 |
3.63e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.66 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 474 GQITALLGHSGAGKSTLLNILSGLSVPTKGsvtiynnrlsemadleSVFRISGvcpqsnvqfdfltvrENLRlfakirgv 553
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGG----------------GVIYIDG---------------EDIL-------- 42
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 554 ppqevekevqRVLLELEMKNIQDILARNLSGGQKRKLTFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLL-------KE 626
Cdd:smart00382 43 ----------EEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEelrllllLK 112
|
170 180 190
....*....|....*....|....*....|....*
gi 1958662872 627 RKADRVVLFSTQFMDEAD-----ILADRKVFISRG 656
Cdd:smart00382 113 SEKNLTVILTTNDEKDLGpallrRRFDRRIVLLLI 147
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
1263-1316 |
5.24e-03 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 40.85 E-value: 5.24e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1958662872 1263 SKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKSTAGQVLLKG 1316
Cdd:PRK15079 29 QPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
464-614 |
5.84e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 41.69 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 464 LKDLTLDIYEGQITALLGHSGAGKSTLLNILSGLsVPTKGSVTIYNNRLSEMADLESVFRISGVCPQSNVQFDFlTVREN 543
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM-VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQN 1403
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 544 LRLFAKirgVPPQEVEKEVQRV-LLELEMKNIQDILAR------NLSGGQKRKLTFGTAILG-DSQIFLLDEPTAGLDP 614
Cdd:PTZ00243 1404 VDPFLE---ASSAEVWAALELVgLRERVASESEGIDSRvleggsNYSVGQRQLMCMARALLKkGSGFILMDEATANIDP 1479
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1365-1420 |
6.02e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.15 E-value: 6.02e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958662872 1365 RLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQ 1420
Cdd:PRK10938 118 QLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
|
|
| MelB |
COG2211 |
Na+/melibiose symporter or related transporter [Carbohydrate transport and metabolism]; |
1013-1140 |
6.11e-03 |
|
Na+/melibiose symporter or related transporter [Carbohydrate transport and metabolism];
Pssm-ID: 441813 [Multi-domain] Cd Length: 447 Bit Score: 41.04 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958662872 1013 KNKVWFQLRVSGLFpsaYWFGQALVDiplycfvFLFMSLMDYLLGFPDATLIVIThvlqipcsVGYAISLIFLTYVISFI 1092
Cdd:COG2211 226 KNRPFLLLLLAYLL---FFLALALVA-------ALLLYYFKYVLGLSAALVGLLL--------ALYFLAALLGAPLWPRL 287
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958662872 1093 SRK-GKKNSGIWSLCFYIITMF--------SVVAMLLDFNVDAILYCIIFLLPPSTL 1140
Cdd:COG2211 288 AKRfGKKKAFIIGLLLAALGLLllfflgpgNLWLLLVLAALAGIGLGAILVLPWAML 344
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
1370-1441 |
7.66e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 40.37 E-value: 7.66e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958662872 1370 LQLQDQLKSPVKTLSEGVKRKLCFVLSIL-------GNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRgALLTTH 1441
Cdd:COG3593 150 LRIEDGKELPLDRLGSGFQRLILLALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQ-VIITTH 227
|
|
| |
