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Conserved domains on  [gi|1958660373|ref|XP_038942553|]
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transmembrane protein 100 isoform X1 [Rattus norvegicus]

Protein Classification

TMEM100 domain-containing protein( domain architecture ID 11242232)

TMEM100 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMEM100 pfam16311
Transmembrane protein 100; This family of proteins is found in eukaryotes. Proteins in this ...
 1-133 8.63e-63

Transmembrane protein 100; This family of proteins is found in eukaryotes. Proteins in this family are approximately 130 amino acids in length. There is some apparent similarity with family the phosphoinositide-interacting protein family PIRT, pfam15099, because those proteins are also transmembrane proteins.


:

Pssm-ID: 465088  Cd Length: 133  Bit Score: 188.32  E-value: 8.63e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660373   1 MTEEPTKENLGGPKSPTPVTMEKSPKSEVVVTTVPLVSEVQLTAATGGAELSCYRCIIPFAVVVFITGIVVTAVAYSFNS 80
Cdd:pfam16311   1 MTEEPIKEILGTPKCPDPVTMEKSNNNDCVVTTIPLVSENQLTAATGGAELSCYRCTIPFGVVILIAGIVVTAVAYSFNS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958660373  81 HGSVISILGLVLLSSGLFLLASSALCWKVRQRNKKVKRRESQTALVVNQRSLF 133
Cdd:pfam16311  81 HGSIISVFGLVLLSSGLLLLASSAVCWKIRQRRKKAKRRESQTALVANQRSLF 133
 
Name Accession Description Interval E-value
TMEM100 pfam16311
Transmembrane protein 100; This family of proteins is found in eukaryotes. Proteins in this ...
 1-133 8.63e-63

Transmembrane protein 100; This family of proteins is found in eukaryotes. Proteins in this family are approximately 130 amino acids in length. There is some apparent similarity with family the phosphoinositide-interacting protein family PIRT, pfam15099, because those proteins are also transmembrane proteins.


Pssm-ID: 465088  Cd Length: 133  Bit Score: 188.32  E-value: 8.63e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660373   1 MTEEPTKENLGGPKSPTPVTMEKSPKSEVVVTTVPLVSEVQLTAATGGAELSCYRCIIPFAVVVFITGIVVTAVAYSFNS 80
Cdd:pfam16311   1 MTEEPIKEILGTPKCPDPVTMEKSNNNDCVVTTIPLVSENQLTAATGGAELSCYRCTIPFGVVILIAGIVVTAVAYSFNS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958660373  81 HGSVISILGLVLLSSGLFLLASSALCWKVRQRNKKVKRRESQTALVVNQRSLF 133
Cdd:pfam16311  81 HGSIISVFGLVLLSSGLLLLASSAVCWKIRQRRKKAKRRESQTALVANQRSLF 133
 
Name Accession Description Interval E-value
TMEM100 pfam16311
Transmembrane protein 100; This family of proteins is found in eukaryotes. Proteins in this ...
 1-133 8.63e-63

Transmembrane protein 100; This family of proteins is found in eukaryotes. Proteins in this family are approximately 130 amino acids in length. There is some apparent similarity with family the phosphoinositide-interacting protein family PIRT, pfam15099, because those proteins are also transmembrane proteins.


Pssm-ID: 465088  Cd Length: 133  Bit Score: 188.32  E-value: 8.63e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660373   1 MTEEPTKENLGGPKSPTPVTMEKSPKSEVVVTTVPLVSEVQLTAATGGAELSCYRCIIPFAVVVFITGIVVTAVAYSFNS 80
Cdd:pfam16311   1 MTEEPIKEILGTPKCPDPVTMEKSNNNDCVVTTIPLVSENQLTAATGGAELSCYRCTIPFGVVILIAGIVVTAVAYSFNS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958660373  81 HGSVISILGLVLLSSGLFLLASSALCWKVRQRNKKVKRRESQTALVVNQRSLF 133
Cdd:pfam16311  81 HGSIISVFGLVLLSSGLLLLASSAVCWKIRQRRKKAKRRESQTALVANQRSLF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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