|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
145-348 |
2.27e-96 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 284.12 E-value: 2.27e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 145 MKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvslataciqhlhliagthteeeqqkalk 224
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 225 dftlenilsHIYYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLDDLFLRTRLLNGLAQQLISLANKHR 304
Cdd:cd19492 48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958660367 305 LAVILTNQMTTKIDKNQAS-LVPALGESWGHAATIRLIFHWEQKQ 348
Cdd:cd19492 119 LAVVLTNQVTTKISEDGQSqLVPALGESWSHACTTRLFLTWDEKQ 163
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
146-344 |
4.69e-46 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 155.59 E-value: 4.69e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 146 KTTEVCGVPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGSFMVDRVVSLAtaciqhlhliagthteeeQQKALKD 225
Cdd:cd01393 2 KITEIYGPPGSGKTQLALQLAANALLLG------GGVVWIDTEGAFPPSRLVQIL------------------EASPSSE 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 226 FTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLDDLF-------LRTRLLNGLAQQLIS 298
Cdd:cd01393 58 LELAEALSRLLYFRPPDTLAHLLALDSLPESLFPPPNTSLVVVDSVSALFRKAFPRGGdgdssssLRARLLSQLARALQK 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958660367 299 LANKHRLAVILTNQMTTKIDKNQAS--LVPALGESWGHAATIRLIFHW 344
Cdd:cd01393 138 LAAQFNLAVVVTNQVTTKIRGGSGAslVPPALGNTWEHSVSTRLLLYR 185
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
134-340 |
2.94e-45 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 155.53 E-value: 2.94e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 134 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGt 213
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLPKRYHLEKA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 214 hteeeqqkalkdftlENILSHIYYFRCHDYTELLAQV-YLLPDFLSDHsKVQLVIIDGIAFPFRHDLD----DLFLRTRL 288
Cdd:cd19491 80 ---------------KNFLDNIFVEHVADLETLEHCLnYQLPALLERG-PIRLVVIDSIAALFRSEFDtsrsDLVERAKY 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958660367 289 LNGLAQQLISLANKHRLAVILTNQMTTKIDKN-----------------------QASLVPALGESWGHAATIRL 340
Cdd:cd19491 144 LRRLADHLKRLADKYNLAVVVVNQVTDRFDSSsdasglgvldylsqfssfsggvsGNRKVPALGLTWANLVNTRL 218
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
48-340 |
1.70e-42 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 150.28 E-value: 1.70e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 48 PAVRVKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECltnkprcagtSVANKKcTALELLEQEHTQGFI 127
Cdd:TIGR02236 9 PATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAA----------DLGGFE-TADDVLERRKTIGKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 128 ITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATAciqhl 207
Cdd:TIGR02236 78 TTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEA----- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 208 hliAGTHTEEeqqkalkdftlenILSHIYYFRCHDYTELLAQVYLLPDFLSDHSK-VQLVIIDGIAFPFRHDL---DDLF 283
Cdd:TIGR02236 153 ---RGLDPDE-------------VLKNIYVARAYNSNHQMLLVEKAEDLIKELNNpVKLLIVDSLTSHFRAEYvgrGALA 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958660367 284 LRTRLLNGLAQQLISLANKHRLAVILTNQMTTKIDKNQAS-LVPALGESWGHAATIRL 340
Cdd:TIGR02236 217 ERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDpTRPIGGHILGHAATFRV 274
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
48-340 |
1.46e-41 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 148.10 E-value: 1.46e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 48 PAVRVKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECltnkprcagtSVANKKcTALELLEQEHTQGFI 127
Cdd:PRK04301 16 PATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAA----------DIGGFE-TALEVLERRKNVGKI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 128 ITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATAciqhl 207
Cdd:PRK04301 85 TTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA----- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 208 hliagthteeeqqkalKDFTLENILSHIYYFRCH--DYTELLAQVylLPDFLSDHSKVQLVIIDGIAFPFRHD---LDDL 282
Cdd:PRK04301 160 ----------------LGLDPDEVLDNIHVARAYnsDHQMLLAEK--AEELIKEGENIKLVIVDSLTAHFRAEyvgRGNL 221
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958660367 283 FLRTRLLNGLAQQLISLANKHRLAVILTNQMTTKIDknqA----SLVPALGESWGHAATIRL 340
Cdd:PRK04301 222 AERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AffgdPTQPIGGHILGHTATFRI 280
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
113-340 |
1.51e-38 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 138.20 E-value: 1.51e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 113 TALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 192
Cdd:pfam08423 5 TATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 193 VDRVVSLAtaciqhlhliagthteeEQQKALKDFTLENILshiyYFRCHDY---TELLAQvylLPDFLSDhSKVQLVIID 269
Cdd:pfam08423 85 PERLVAIA-----------------ERYGLDPEDVLDNVA----YARAYNSehqMQLLQQ---AAAMMSE-SRFALLIVD 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958660367 270 GIAFPFRHD---LDDLFLRTRLLNGLAQQLISLANKHRLAVILTNQMTTKIDKNQASLV-----PALGESWGHAATIRL 340
Cdd:pfam08423 140 SATALYRTDfsgRGELAERQQHLAKFLRTLQRLADEFGVAVVITNQVVAQVDGAAGMFSgdpkkPIGGHIMAHASTTRL 218
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
135-358 |
1.30e-34 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 127.05 E-value: 1.30e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 135 DNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvSLATACIQHLHLIAGTH 214
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKF------SAERLAEIAEARFPEAF 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 215 TEEEQQKALkdftLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHsKVQLVIIDGIAFPFRHD----LDDLFLRTRLLN 290
Cdd:cd19493 75 SGFMEENER----AEEMLKRVAVVRVTTLAQLLERLPNLEEHILSS-GVRLVVIDSIAALVRREfggsDGEVTERHNALA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958660367 291 GLAQQLISLANKHRLAVILTNQMTTKIDKNQ---ASLVPALGESWGHAATIRLIFHWEQKQSLRDLEMLLS 358
Cdd:cd19493 150 REASSLKRLAEEFRIAVLVTNQATTHFGDAGdgsSGVTAALGDAWAHAVNTRLRLERCLLQLRRVLEIVKS 220
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
127-342 |
5.60e-31 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 117.46 E-value: 5.60e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 127 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATAciqh 206
Cdd:cd19515 1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKA---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 207 lhliagthteeeqqkalKDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDL---DDLF 283
Cdd:cd19515 77 -----------------LGLDPDEVLDNIYVARAYNSNHQMLLVEKAEDLIKEGNNIKLLIVDSLTSHFRAEYvgrGTLA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 284 LRTRLLNGLAQQLISLANKHRLAVILTNQMTTKIDKNQA-SLVPALGESWGHAATIRLIF 342
Cdd:cd19515 140 ERQQKLNKHLHDLHRLADLYNIAVLVTNQVMAKPDAFFGdPTQAIGGHILGHAATFRVYL 199
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
53-340 |
3.36e-29 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 115.48 E-value: 3.36e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 53 KLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECltnkprcagtsvANKKCTALELLEQEHTQGFIITFCS 132
Cdd:PTZ00035 38 KLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLV------------PMGFISATEYLEARKNIIRITTGST 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 133 ALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqhlhliag 212
Cdd:PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA------------ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 213 thteeeqqkalKDFTL--ENILSHIYYFRCHDyTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLD---DLFLRTR 287
Cdd:PTZ00035 174 -----------ERFGLdpEDVLDNIAYARAYN-HEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSgrgELAERQQ 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958660367 288 LLNGLAQQLISLANKHRLAVILTNQMTTKIDKNQA----SLVPALGESWGHAATIRL 340
Cdd:PTZ00035 242 HLGKFLRALQKLADEFNVAVVITNQVMADVDGASMfvadPKKPIGGHIIAHASTTRL 298
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
127-340 |
3.76e-29 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 112.84 E-value: 3.76e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 127 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqh 206
Cdd:cd19514 1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 207 lhliagthteeEQQKALKDFTLENILshiyYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLD---DLF 283
Cdd:cd19514 75 -----------ERFGVDHDAVLDNIL----YARAYTSEHQMELLDYVAAKFHEEAVFRLLIIDSIMALFRVDFSgrgELA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958660367 284 LRTRLLNGLAQQLISLANKHRLAVILTNQMTTkiDKNQASLV------PALGESWGHAATIRL 340
Cdd:cd19514 140 ERQQKLAQMLSRLQKISEEYNVAVFITNQVTA--DPGAAMTFqadpkkPIGGHILAHASTTRI 200
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
127-340 |
7.48e-28 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 108.80 E-value: 7.48e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 127 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGsFMVDRVvslataciqh 206
Cdd:PRK09361 5 LPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG------KKVIYIDTEG-LSPERF---------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 207 lhliagthteeeQQKALKDFtlENILSHIYYFRCHDYTELLAQVYLLPDFLSDhsKVQLVIIDGIAFPFRHDLDDLFLRT 286
Cdd:PRK09361 68 ------------KQIAGEDF--EELLSNIIIFEPSSFEEQSEAIRKAEKLAKE--NVGLIVLDSATSLYRLELEDEEDNS 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958660367 287 RLLNGLAQQ---LISLANKHRLAVILTNQMTTKIDKNqaSLVPALGESWGHA--ATIRL 340
Cdd:PRK09361 132 KLNRELGRQlthLLKLARKHDLAVVITNQVYSDIDSD--GLRPLGGHTLEHWskTILRL 188
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
53-340 |
1.94e-27 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 110.59 E-value: 1.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 53 KLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQIlrrecltnkprcAGTSVANKKCTALELLEQEHTQGFIITFCS 132
Cdd:PLN03186 43 KLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEA------------ASKLVPLGFTTASQLHAQRQEIIQITTGSR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 133 ALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqhlhliag 212
Cdd:PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA------------ 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 213 thteeEQQKALKDFTLENilshIYYFRCHDyTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLD---DLFLRTRLL 289
Cdd:PLN03186 179 -----ERFGLNGADVLEN----VAYARAYN-TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSgrgELSARQMHL 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1958660367 290 NGLAQQLISLANKHRLAVILTNQMTTKIDKNQ----ASLVPALGESWGHAATIRL 340
Cdd:PLN03186 249 GKFLRSLQRLADEFGVAVVITNQVVAQVDGSAffagPQLKPIGGNIMAHASTTRL 303
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
149-343 |
2.63e-27 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 107.43 E-value: 2.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 149 EVCGVPGVGKTQLCMQLAVDVQIPECFGGVA-----GEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEQQkal 223
Cdd:cd19490 5 EITGPSGSGKTELLYHLAARCILPSSWGGVPlggleAAVVFIDTDGRFDILRLRSILEARIRAAIQAANSSDDEEDV--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 224 kDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHS---KVQLVIIDGIAFPFRHD-------LDDLFLRTRLLNGLA 293
Cdd:cd19490 82 -EEIARECLQRLHIFRCHSSLQLLATLLSLENYLLSLSanpELGLLLIDSISAFYWQDrfsaelaRAAPLLQEAALRAIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958660367 294 QQLISLANKHRLAVILTNQM--------TTKIDKNQASLVP-------ALGESWGHAATIRLIFH 343
Cdd:cd19490 161 RELRRLRRRFQLVVIATKQAlfpgksasTDNPAANNAVSKAsapshreYLPRPWQRLVTHRLVLS 225
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
127-342 |
1.06e-26 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 106.08 E-value: 1.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 127 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqh 206
Cdd:cd01123 1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 207 lhliagthteeeQQKALKDftlENILSHIYYFRCHDYTELLAQVYLLPDFLSDhSKVQLVIIDGIAFPFRHDLD---DLF 283
Cdd:cd01123 75 ------------QRFGLDP---DDVLDNVAYARAFNSDHQTQLLDQAAAMMVE-SRFKLLIVDSATALYRTDYSgrgELS 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958660367 284 LRTRLLNGLAQQLISLANKHRLAVILTNQMTTKIDKNQASLV----PALGESWGHAATIRLIF 342
Cdd:cd01123 139 ARQMHLAKFLRMLQRLADEFGVAVVVTNQVVAQVDGAMMFAAdpkkPIGGNILAHASTTRLYL 201
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
53-342 |
2.20e-26 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 107.17 E-value: 2.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 53 KLVAAGFQTAEDVLEVKPSELSKEVGISkEEALETLQilrrecltnkprcagtSVANKKC-----TALELLEQEHTQGFI 127
Cdd:TIGR02238 16 KLKSAGICTVNGVIMTTRRALCKIKGLS-EAKVDKIK----------------EAASKIInpgfiTAFEISQKRKKVLKI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 128 ITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqhl 207
Cdd:TIGR02238 79 TTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIA------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 208 hliagthteeEQQKALKDFTLENILSHIYYFRCHDYtELLAqvYLLPDFLSDHSKvqLVIIDGIAFPFRHDLD---DLFL 284
Cdd:TIGR02238 152 ----------ERFGVDPDAVLDNILYARAYTSEHQM-ELLD--YLAAKFSEEPFR--LLIVDSIMALFRVDFSgrgELSE 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958660367 285 RTRLLNGLAQQLISLANKHRLAVILTNQMTTkiDKNQASLV------PALGESWGHAATIRLIF 342
Cdd:TIGR02238 217 RQQKLAQMLSRLNKISEEFNVAVFVTNQVQA--DPGATMTFiadpkkPIGGHVLAHASTTRILL 278
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
127-325 |
1.17e-25 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 102.78 E-value: 1.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 127 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVqipecfGGVAGEAVFIDTEGsFMVDRVVSlataciqh 206
Cdd:cd01394 1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQ-------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 207 lhlIAGTHTEEeqqkalkdftlenILSHIYYFRCHDYTELLAQVYLLPDFLSDHsKVQLVIIDGIAFPFRHDLDDlflRT 286
Cdd:cd01394 66 ---IAGERFES-------------IASNIIVFEPYSFDEQGVAIQEAEKLLKSD-KVDLVVVDSATALYRLELGD---DS 125
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958660367 287 RLLNGLAQQ---LISLANKHRLAVILTNQMTTKIDKNQASLV 325
Cdd:cd01394 126 EANRELSRQmskLLSIARKYDIPVVITNQVYSDIDDDRLKPV 167
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
113-342 |
6.47e-25 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 103.70 E-value: 6.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 113 TALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 192
Cdd:PLN03187 94 TGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFR 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 193 VDRVVSLAtaciQHLHLIAGThteeeqqkalkdftlenILSHIYYFRCHDYTELLAQVYLLPDFLSDHSkVQLVIIDGIA 272
Cdd:PLN03187 174 PDRIVPIA----ERFGMDADA-----------------VLDNIIYARAYTYEHQYNLLLGLAAKMAEEP-FRLLIVDSVI 231
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958660367 273 FPFRHDL---DDLFLRTRLLNGLAQQLISLANKHRLAVILTNQMTTkiDKNQASLV-----PALGESWGHAATIRLIF 342
Cdd:PLN03187 232 ALFRVDFtgrGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIA--DPGGGMFIsdpkkPAGGHVLAHAATIRLML 307
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
41-340 |
1.05e-22 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 97.10 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 41 LVGFPLSPAVRVKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQIlrrecltnkprcAGTSVANKKCTALELLEQ 120
Cdd:TIGR02239 4 LEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAE------------AAKLVPMGFTTATEFHQR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 121 EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLA 200
Cdd:TIGR02239 72 RQEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 201 taciqhlhliagthteeeqqkalKDFTL--ENILSHIYYFRCHD---YTELLAQVYLLpdfLSDhSKVQLVIIDGIAFPF 275
Cdd:TIGR02239 152 -----------------------ERYGLnpEDVLDNVAYARAYNtdhQLQLLQQAAAM---MSE-SRFALLIVDSATALY 204
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958660367 276 RHDLD---DLFLRTRLLNGLAQQLISLANKHRLAVILTNQMTTKIDKNQASLV-----PALGESWGHAATIRL 340
Cdd:TIGR02239 205 RTDFSgrgELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAgdpkkPIGGNIMAHASTTRL 277
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
139-342 |
1.69e-22 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 93.85 E-value: 1.69e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 139 GGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQipeCFGGVAgeAVFIDTEGSFMVDRVVSLATACIQhlhliagthTEEE 218
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANVA---SRSGQN--VLYIDTKSSFSARRLAQILKSRAQ---------DAEE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 219 QQKAlkdftleniLSHIYYFRCHDYTELLAQVYLLPDFLSD-----HSKVQLVIIDGIA---FPFRHDLDDLFLRTrLLN 290
Cdd:cd19489 67 IDKA---------LQRIRVVRVFDPYELLDLLEELRNTLSQqqenlYSRLKLVIIDSLSaliSPLLGGSKHSEGHA-LLA 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958660367 291 GLAQQLISLANKHRLAVILTNQMTTKID-KNQASLVPALGESWGHAATIRLIF 342
Cdd:cd19489 137 SLARLLKKLAAEYQIAVLVTNLTVRGGDgGQQGSTKPALGEYWESVPSTRLLL 189
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
127-340 |
1.73e-22 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 94.69 E-value: 1.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 127 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqh 206
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 207 lhliagthteeeqqkalKDFTL--ENILSHIYYFRCHDyTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLD---D 281
Cdd:cd19513 75 -----------------ERYGLngEDVLDNVAYARAYN-TDHQMQLLIQASAMMAESRYALLIVDSATALYRTDYSgrgE 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958660367 282 LFLRTRLLNGLAQQLISLANKHRLAVILTNQMTTKIDKNQA----SLVPALGESWGHAATIRL 340
Cdd:cd19513 137 LSARQMHLAKFLRMLQRLADEFGVAVVITNQVVAQVDGAAMfagdPKKPIGGNIMAHASTTRL 199
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
134-366 |
4.57e-18 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 81.69 E-value: 4.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 134 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQipecfgGVAGEAVFIDTEGsFMVDRVVSLATAciqhlhliagt 213
Cdd:TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAED----------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 214 hteeeqqkalkdfTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHsKVQLVIIDGIAFPFRHDL-DDLFLRTRLLNGL 292
Cdd:TIGR02237 63 -------------RPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELsDDRISRNRELARQ 128
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958660367 293 AQQLISLANKHRLAVILTNQMTTKIDKNQASlvpALGEswghaatiRLIFHWeQKQSLRdLEML----LSLLPHHRQK 366
Cdd:TIGR02237 129 LTLLLSLARKKNLAVVITNQVYTDVNNGTLR---PLGG--------HLLEHW-SKVILR-LEKFrgrrLATLEKHRSR 193
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
134-315 |
2.29e-07 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 51.07 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 134 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDvqipecfGGVAGE-AVFIDTEGSfmVDRVVSLATAciqhlhliAG 212
Cdd:COG0467 9 LDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAE-------GLRRGEkGLYVSFEES--PEQLLRRAES--------LG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 213 THTEEEQQKALkdFTLENILSHIYYFrchDYTELLAQvylLPDFLSDHsKVQLVIIDGIAfPFRHDLDDLFLRTRLLNgl 292
Cdd:COG0467 72 LDLEEYIESGL--LRIIDLSPEELGL---DLEELLAR---LREAVEEF-GAKRVVIDSLS-GLLLALPDPERLREFLH-- 139
|
170 180
....*....|....*....|...
gi 1958660367 293 aqQLISLANKHRLAVILTNQMTT 315
Cdd:COG0467 140 --RLLRYLKKRGVTTLLTSETGG 160
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
127-191 |
3.24e-06 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 48.63 E-value: 3.24e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958660367 127 IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPecfGGVageAVFIDTEGSF 191
Cdd:COG0468 44 ISTGSLALDIALGvGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA---GGI---AAFIDAEHAL 103
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
134-313 |
5.09e-06 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 46.87 E-value: 5.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 134 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDvqipecfGGVAGE-AVFIDTEgsfmvdrvvslataciqhlhliag 212
Cdd:cd01124 8 LDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYA-------GAKNGEpGLFFTFE------------------------ 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660367 213 THTEEEQQKALK---DFTLENILSHIyYFRCHDYTELLAqvYLLPDFLSD------HSKVQLVIIDGIAfPFRHDLDDLF 283
Cdd:cd01124 57 ESPERLLRNAKSfgwDFDEMEDEGKL-IIVDAPPTEAGR--FSLDELLSRilsiikSFKAKRVVIDSLS-GLRRAKEDQM 132
|
170 180 190
....*....|....*....|....*....|
gi 1958660367 284 LRTRLLNGLAQQLislaNKHRLAVILTNQM 313
Cdd:cd01124 133 RARRIVIALLNEL----RAAGVTTIFTSEM 158
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
134-167 |
8.27e-06 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 46.47 E-value: 8.27e-06
10 20 30
....*....|....*....|....*....|....
gi 1958660367 134 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAV 167
Cdd:pfam06745 8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLY 41
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
134-164 |
6.19e-04 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 41.79 E-value: 6.19e-04
10 20 30
....*....|....*....|....*....|.
gi 1958660367 134 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQ 164
Cdd:PRK09302 20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQ 50
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
126-191 |
1.33e-03 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 39.85 E-value: 1.33e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958660367 126 FIITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIpecFGGVageAVFIDTEGSF 191
Cdd:cd00983 4 VIPTGSLSLDIALGiGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK---LGGT---AAFIDAEHAL 64
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
134-164 |
3.75e-03 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 38.50 E-value: 3.75e-03
10 20 30
....*....|....*....|....*....|.
gi 1958660367 134 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQ 164
Cdd:cd19485 8 FDDITHGGLPKGRPTLICGTAGTGKTLFAAQ 38
|
|
| |
