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Conserved domains on  [gi|1958658985|ref|XP_038942058|]
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EF-hand calcium-binding domain-containing protein 3 isoform X8 [Rattus norvegicus]

Protein Classification

EF-hand domain-containing protein( domain architecture ID 10619601)

EF-hand (EFh) domain-containing protein may be involved in binding intracellular calcium and in calcium signal transduction

CATH:  1.10.238.10
Gene Ontology:  GO:0005509
PubMed:  2479149|10191494
SCOP:  3001983

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EF-hand_8 pfam13833
EF-hand domain pair;
4562-4612 3.79e-06

EF-hand domain pair;


:

Pssm-ID: 404678 [Multi-domain]  Cd Length: 54  Bit Score: 46.92  E-value: 3.79e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1958658985 4562 TGCIDSHGLMSTVAKLGMN-LNAYDIYNELKCADRDRDGKINFSDFIDVLTD 4612
Cdd:pfam13833    2 KGVITREELKRALALLGLKdLSEDEVDILFREFDTDGDGYISFDEFCVLLER 53
 
Name Accession Description Interval E-value
EF-hand_8 pfam13833
EF-hand domain pair;
4562-4612 3.79e-06

EF-hand domain pair;


Pssm-ID: 404678 [Multi-domain]  Cd Length: 54  Bit Score: 46.92  E-value: 3.79e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1958658985 4562 TGCIDSHGLMSTVAKLGMN-LNAYDIYNELKCADRDRDGKINFSDFIDVLTD 4612
Cdd:pfam13833    2 KGVITREELKRALALLGLKdLSEDEVDILFREFDTDGDGYISFDEFCVLLER 53
PTZ00183 PTZ00183
centrin; Provisional
 4538-4613 3.10e-05

centrin; Provisional


Pssm-ID: 185503 [Multi-domain]  Cd Length: 158  Bit Score: 47.38  E-value: 3.10e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958658985 4538 KETKLSPAQLEAFRNAYNFFTKDRTGCIDSHGLMSTVAKLGMNLNAYDIYNELKCADRDRDGKINFSDFIDVLTDK 4613
Cdd:PTZ00183     7 ERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82
 
Name Accession Description Interval E-value
EF-hand_8 pfam13833
EF-hand domain pair;
4562-4612 3.79e-06

EF-hand domain pair;


Pssm-ID: 404678 [Multi-domain]  Cd Length: 54  Bit Score: 46.92  E-value: 3.79e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1958658985 4562 TGCIDSHGLMSTVAKLGMN-LNAYDIYNELKCADRDRDGKINFSDFIDVLTD 4612
Cdd:pfam13833    2 KGVITREELKRALALLGLKdLSEDEVDILFREFDTDGDGYISFDEFCVLLER 53
PTZ00183 PTZ00183
centrin; Provisional
 4538-4613 3.10e-05

centrin; Provisional


Pssm-ID: 185503 [Multi-domain]  Cd Length: 158  Bit Score: 47.38  E-value: 3.10e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958658985 4538 KETKLSPAQLEAFRNAYNFFTKDRTGCIDSHGLMSTVAKLGMNLNAYDIYNELKCADRDRDGKINFSDFIDVLTDK 4613
Cdd:PTZ00183     7 ERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82
PTZ00183 PTZ00183
centrin; Provisional
 4553-4616 4.55e-03

centrin; Provisional


Pssm-ID: 185503 [Multi-domain]  Cd Length: 158  Bit Score: 40.83  E-value: 4.55e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958658985 4553 AYNFFTKDRTGCIDSHGLMSTVAKLGMNLNAYDIYNELKCADRDRDGKINFSDFIDVLTDKKLF 4616
Cdd:PTZ00183    95 AFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNLF 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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