|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
65-150 |
3.58e-30 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 114.29 E-value: 3.58e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 65 LDAEFDHFVVDMKPFVLKLPHRSERQRCALWIRKLCEPSGTgagLMGRKNRNLYAKLLLHMLRRGVLEGPFTHRPEPGTL 144
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 1958657580 145 KVLPSY 150
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
587-921 |
3.62e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 3.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 587 SELDKEKEDAQRKIHKFEEAL-------KEKEEQLGRVtEVQRLQAQQADAALEEFK-RQVEVTSEKvYSDMKEQMEKVE 658
Cdd:COG1196 168 SKYKERKEEAERKLEATEENLerledilGELERQLEPL-ERQAEKAERYRELKEELKeLEAELLLLK-LRELEAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 659 ADLSRSKSLREKQSKEfLWQLEDARQRYEQQIVELKLEHEqEKTHLLQQHNAEKDSLVRDHEREVE---NLENQLRAANM 735
Cdd:COG1196 246 AELEELEAELEELEAE-LAELEAELEELRLELEELELELE-EAQAEEYELLAELARLEQDIARLEErrrELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 736 EHEnQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKK 815
Cdd:COG1196 324 ELA-ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 816 THAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQkfEDEKQQLIRDNDQ 895
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE--LLEEAALLEAALA 480
|
330 340
....*....|....*....|....*.
gi 1958657580 896 AIKALQDELETRSNQVRSAEKKLQHK 921
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
332-966 |
5.15e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 5.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 332 KELDMKTKMMEAKFSEEKLKLQKKHdaEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKE 411
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELE--AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 412 NQITE----LKKICEQSTESLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERcyqitcsELQELKTR 487
Cdd:TIGR02168 418 RLQQEieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER-------ELAQLQAR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 488 QNLLHTEKEHL--VNDYEQNVKLLKTKYDSDINILRQ------------EHALSTSKTSVVIEELEQNIRQLKQQVQESE 553
Cdd:TIGR02168 491 LDSLERLQENLegFSEGVKALLKNQSGLSGILGVLSElisvdegyeaaiEAALGGRLQAVVVENLNAAKKAIAFLKQNEL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 554 LQRKQQVKDQEDKFHMEKNHLKYI-YEEKVHELKSELDKEKEDAQRKIhkfeealkekEEQLGRVTEVQRLQAQQADAAL 632
Cdd:TIGR02168 571 GRVTFLPLDSIKGTEIQGNDREILkNIEGFLGVAKDLVKFDPKLRKAL----------SYLLGGVLVVDDLDNALELAKK 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 633 EEFK-RQVEVTSEKVYSD---MKEQMEKVEADLSRSKSLRE-----KQSKEFLWQLEDARQRYEQQIVELKLEHEQ---E 700
Cdd:TIGR02168 641 LRPGyRIVTLDGDLVRPGgviTGGSAKTNSSILERRREIEEleekiEELEEKIAELEKALAELRKELEELEEELEQlrkE 720
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 701 KTHLLQQHNAEKDSLVRdHEREVENLENQLRAANMEHENQIQESKKRDAQvIADMEAQVHKLREELINVNSHRKQQLVEL 780
Cdd:TIGR02168 721 LEELSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 781 GLLREE--EKQRAARDHETAVKKLKaesERVKMELKKTHAAETEMT-LEKANSRLKQIEKEYTQKLAKSSQIIAELQTTI 857
Cdd:TIGR02168 799 KALREAldELRAELTLLNEEAANLR---ERLESLERRIAATERRLEdLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 858 SSLKEESSRQQLAAERRLQDviqkfEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYE 937
Cdd:TIGR02168 876 EALLNERASLEEALALLRSE-----LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
650 660 670
....*....|....*....|....*....|....
gi 1958657580 938 TKFKGLMP-----ASLRQELEDTISSLKSQVNFL 966
Cdd:TIGR02168 951 LTLEEAEAlenkiEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
378-979 |
5.28e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 5.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 378 YKKKQtetEETVRKLEKKVQILIRDCQVIRETKEnQITELKKICEQSTESLNNDWEKKNHMIKDLEGRVQQLMGEAENSN 457
Cdd:TIGR02168 170 YKERR---KETERKLERTRENLDRLEDILNELER-QLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 458 LQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYeQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEE 537
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 538 LEQNIRQlKQQVQESELQRKQQVKDQEDKFHMEKNHLkyiyeEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLgrv 617
Cdd:TIGR02168 325 LEELESK-LDELAEELAELEEKLEELKEELESLEAEL-----EELEAELEELESRLEELEEQLETLRSKVAQLELQI--- 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 618 tEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYE--QQIVELKL 695
Cdd:TIGR02168 396 -ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEelREELEEAE 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 696 EHEQEKTHLLQQHNAEKDSLVRDHER-----------------------------EVEN-LENQLRAANMEHENQIQESK 745
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENlegfsegvkallknqsglsgilgvlseliSVDEgYEAAIEAALGGRLQAVVVEN 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 746 KRDAQVIADMEAQVHKLREELINVNSHRKQQLVELG---LLREEEKQRAARDHETAVKKLK------------AESERVK 810
Cdd:TIGR02168 555 LNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDreiLKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvVDDLDNA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 811 MEL-KKTHAAETEMTL----------------EKANSRLkqiekEYTQKLAKSSQIIAELQTTISSLKeessrQQLAAER 873
Cdd:TIGR02168 635 LELaKKLRPGYRIVTLdgdlvrpggvitggsaKTNSSIL-----ERRREIEELEEKIEELEEKIAELE-----KALAELR 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 874 RLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELE---AQEQMMYIRQEYETKFKGLMPA-SLR 949
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElteLEAEIEELEERLEEAEEELAEAeAEI 784
|
650 660 670
....*....|....*....|....*....|
gi 1958657580 950 QELEDTISSLKSQVNFLQKRASILQEELTT 979
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTL 814
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
349-905 |
9.41e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 9.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 349 KLKLQKKHDAEVQKILERKNNELEELKilykKKQTETEETVRKLEKKvqilirdcqviRETKENQITELkkicEQSTESL 428
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELE----AELEELEAELAELEAE-----------LEELRLELEEL----ELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 429 NNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERcyqitcsELQELKTRQNLLHTEKEHLVNDYEQNVKL 508
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE-------ELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 509 LKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNhlkyiyEEKVHELKSE 588
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL------EELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 589 LDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLR 668
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 669 EKQS----------------KEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNA--------EKDSLVRDHEREVE 724
Cdd:COG1196 514 LLLAglrglagavavligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 725 NLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKA 804
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 805 ESERVKMELKKTHAAEtEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQttiSSLKEESSRQQLAAERRLQDVIQKFED 884
Cdd:COG1196 674 LLEAEAELEELAERLA-EEELELEEALLAEEEEERELAEAEEERLEEELE---EEALEEQLEAEREELLEELLEEEELLE 749
|
570 580
....*....|....*....|.
gi 1958657580 885 EKQQLIRDNDQAIKALQDELE 905
Cdd:COG1196 750 EEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
582-919 |
1.53e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 582 VHELKSELD---KEKEDAQR-KIHKFEEALKEKEEQLGRVTEVQRlQAQQADAALEEFKRQVEVTsekvysdmKEQMEKV 657
Cdd:COG1196 195 LGELERQLEpleRQAEKAERyRELKEELKELEAELLLLKLRELEA-ELEELEAELEELEAELEEL--------EAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 658 EADLSRSKSLREKQSKEflwqLEDARQRYEQQIVELkLEHEQEKTHLLQQHNAEKDSLVRDhEREVENLENQLRAANmEH 737
Cdd:COG1196 266 EAELEELRLELEELELE----LEEAQAEEYELLAEL-ARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELE-EE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 738 ENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTH 817
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 818 AAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKfeDEKQQLIRDNDQAI 897
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL--LEELAEAAARLLLL 496
|
330 340
....*....|....*....|..
gi 1958657580 898 KALQDELETRSNQVRSAEKKLQ 919
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
534-907 |
7.97e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 7.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 534 VIEELEQNIRQLKQQVQESElqRKQQVKDQEDKFHMEKNHLKYiyeEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQ 613
Cdd:COG1196 194 ILGELERQLEPLERQAEKAE--RYRELKEELKELEAELLLLKL---RELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 614 LgrvtEVQRLQAQQADAALEEFKRQVEVTSEKVysDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVEL 693
Cdd:COG1196 269 L----EELRLELEELELELEEAQAEEYELLAEL--ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 694 KLEH---EQEKTHLLQQHNAEKDSLVRDHEREVENLE--NQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELIN 768
Cdd:COG1196 343 EEELeeaEEELEEAEAELAEAEEALLEAEAELAEAEEelEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 769 VNSHRKQQL----VELGLLREEEKQRAAR---DHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQ 841
Cdd:COG1196 423 LEELEEALAeleeEEEEEEEALEEAAEEEaelEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958657580 842 KLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEK-QQLIRDNDQAIKALQDELETR 907
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlQNIVVEDDEVAAAAIEYLKAA 569
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
331-919 |
8.06e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 8.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 331 EKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETK 410
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 411 E--NQITELKKICEQSTESlnNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQ 488
Cdd:PTZ00121 1415 AakKKADEAKKKAEEKKKA--DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 489 NLLHTEKEHLVNDYEQNVKLLKTKYDSDInilRQEHALSTSKTSVVIEELE--QNIRQLKQQVQESELQRKQQVKDQEDK 566
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEA---KKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEA 1569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 567 FHMEKNH---------LKYIYEEKVHELKSELDKEKEDAQRKIHKFEEAlKEKEEQLGRVTEVQRLQAQQADAALEEFKR 637
Cdd:PTZ00121 1570 KKAEEDKnmalrkaeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 638 QVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDS 714
Cdd:PTZ00121 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEEN 1728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 715 LVRDHEREVENLENQLRAANMEHEnqiQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARD 794
Cdd:PTZ00121 1729 KIKAEEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 795 HETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERR 874
Cdd:PTZ00121 1806 NFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIE 1885
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1958657580 875 LQDVIQKFE-DEKQQLIRDNDQAIK---ALQDELETRSNQVRSAEKKLQ 919
Cdd:PTZ00121 1886 EADEIEKIDkDDIEREIPNNNMAGKnndIIDDKLDKDEYIKRDAEETRE 1934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
364-983 |
1.19e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 364 LERKNNELEELKILYKKKQTETEETVRKLEKKvQILIRDCQVIRETKENQITELKKIceqsTESLNNDWEKKNHMIKDLE 443
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQEL-EEKLEELRLEVSELEEEIEELQKE----LYALANEISRLEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 444 GRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLL---HTEKEHLVNDYEQNVKLLKTKYD---SDI 517
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLeaeLEELEAELEELESRLEELEEQLEtlrSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 518 NILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELkSELDKEKEDAQ 597
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 598 RKIHKFEEALKEKEEQL----GRVTEVQRLQAQQAD---------AALEEFKRQVEVTSEKVYSDMKEQ----------- 653
Cdd:TIGR02168 468 EELEEAEQALDAAERELaqlqARLDSLERLQENLEGfsegvkallKNQSGLSGILGVLSELISVDEGYEaaieaalggrl 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 654 ----MEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVR-------DHERE 722
Cdd:TIGR02168 548 qavvVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllGGVLV 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 723 VENLENQLRAANMEH--------------------------ENQIQESKKRDAQV---IADMEAQVHKLREELINVNS-- 771
Cdd:TIGR02168 628 VDDLDNALELAKKLRpgyrivtldgdlvrpggvitggsaktNSSILERRREIEELeekIEELEEKIAELEKALAELRKel 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 772 HRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMT---------LEKANSRLKQIEKE---- 838
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEaeieeleerLEEAEEELAEAEAEieel 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 839 ------YTQKLAKSSQIIAELQTTISSLKEESSRQQLAA---ERRLQDVIQKFEDEKQQlIRDNDQAIKALQDELETRSN 909
Cdd:TIGR02168 788 eaqieqLKEELKALREALDELRAELTLLNEEAANLRERLeslERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEELEE 866
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657580 910 QVRSAEKKLQHKELE---AQEQMMYIRQEYETKFKGLMPASL-RQELEDTISSLKSQVNFLQKRASILQEELTTYQSR 983
Cdd:TIGR02168 867 LIEELESELEALLNErasLEEALALLRSELEELSEELRELESkRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
279-939 |
2.83e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 2.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 279 SDIEVRLNSWNLGIENPRYLRQKPLPVSLMTPKVSLRnsSNLHDDHFLSRMHEKELDMKTKMMEAKFS-EEKLKLQKKHD 357
Cdd:pfam02463 119 KEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERR--LEIEEEAAGSRLKRKKKEALKKLIEETENlAELIIDLEELK 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 358 AEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESL---NNDWEK 434
Cdd:pfam02463 197 LQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLaqvLKENKE 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 435 KNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEqNVKLLKTKYD 514
Cdd:pfam02463 277 EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK-ELEIKREAEE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 515 SDINILRQEHALSTSKTSVVIEELEQNIRQLKQqvQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKE 594
Cdd:pfam02463 356 EEEEELEKLQEKLEQLEEELLAKKKLESERLSS--AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 595 DAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKE 674
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 675 FLWQLEDARQ-------RYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKR 747
Cdd:pfam02463 514 ALIKDGVGGRiisahgrLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 748 DAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVK--MELKKTHAAETEMTL 825
Cdd:pfam02463 594 IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEglAEKSEVKASLSELTK 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 826 EKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELE 905
Cdd:pfam02463 674 ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEE 753
|
650 660 670
....*....|....*....|....*....|....
gi 1958657580 906 TRSNQVRSAEKKLQHKELeaQEQMMYIRQEYETK 939
Cdd:pfam02463 754 KSRLKKEEKEEEKSELSL--KEKELAEEREKTEK 785
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
416-919 |
4.41e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 60.57 E-value: 4.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 416 ELKKICE--QSTESLNNDWEKKNHMIKDLEGRVQ-QLMGEAE---NSNLQRQKLTQEKLELERCYQITCSELQELKTRQN 489
Cdd:pfam01576 13 ELQKVKErqQKAESELKELEKKHQQLCEEKNALQeQLQAETElcaEAEEMRARLAARKQELEEILHELESRLEEEEERSQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 490 LLHTEKEHLvndyEQNVKLLKTKYDSDiNILRQEHALSTSKTSVVIEELEQNIRQLKqqvqeselqrkqqvkDQEDKFHM 569
Cdd:pfam01576 93 QLQNEKKKM----QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLE---------------DQNSKLSK 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 570 EKNHLkyiyEEKVHELKSELDKEKEDAqrkihKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVY-- 647
Cdd:pfam01576 153 ERKLL----EERISEFTSNLAEEEEKA-----KSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQeq 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 648 -SDMKEQMEKVEADLSRS----------------------KSLREKQS-----KEFLWQLEDARQRYEQQIVELKLEHEQ 699
Cdd:pfam01576 224 iAELQAQIAELRAQLAKKeeelqaalarleeetaqknnalKKIRELEAqiselQEDLESERAARNKAEKQRRDLGEELEA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 700 EKTHLL--QQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQL 777
Cdd:pfam01576 304 LKTELEdtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 778 VELGLLREEEK--QRAARDHETAVKKLKA----------ESERVKMEL-KKTHAAETEmtLEKANSRLKQIEKEYTQKLA 844
Cdd:pfam01576 384 SENAELQAELRtlQQAKQDSEHKRKKLEGqlqelqarlsESERQRAELaEKLSKLQSE--LESVSSLLNEAEGKNIKLSK 461
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657580 845 KSSQIIAELQTTISSLKEEsSRQQLAAERRLqdviQKFEDEK---QQLIRDNDQAIKALQDELETRSNQVRSAEKKLQ 919
Cdd:pfam01576 462 DVSSLESQLQDTQELLQEE-TRQKLNLSTRL----RQLEDERnslQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLE 534
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
316-976 |
7.99e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 59.74 E-value: 7.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 316 NSSNLHDDHFLSRMHEKELDMKTKMMEAKFS-EEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRK--- 391
Cdd:pfam05483 66 KDSDFENSEGLSRLYSKLYKEAEKIKKWKVSiEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQEnkd 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 392 LEKKVQILIRDCQVIRETKENQITELKKIcEQSTESLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLE-- 469
Cdd:pfam05483 146 LIKENNATRHLCNLLKETCARSAEKTKKY-EYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEki 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 470 --LERCYQITCSELQELKTRQNLLHTEKEHLVNDyeqnVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLkQ 547
Cdd:pfam05483 225 qhLEEEYKKEINDKEKQVSLLLIQITEKENKMKD----LTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKEL-E 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 548 QVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKsELDKEKEDAQRKIHKFEEALKEKEEQLGrvTEVQRLQAQQ 627
Cdd:pfam05483 300 DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQME-ELNKAKAAHSFVVTEFEATTCSLEELLR--TEQQRLEKNE 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 628 ADAAL---EEFKRQVEVTSEKVYSDMKE-QMEKVEADLSRSKSLREKQSKefLWQLEDARQRYEQQIVELKLEHEQEKTH 703
Cdd:pfam05483 377 DQLKIitmELQKKSSELEEMTKFKNNKEvELEELKKILAEDEKLLDEKKQ--FEKIAEELKGKEQELIFLLQAREKEIHD 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 704 LLQQHNAEKDSlVRDHEREVENLENQLRAANME------HENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQL 777
Cdd:pfam05483 455 LEIQLTAIKTS-EEHYLKEVEDLKTELEKEKLKnieltaHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERML 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 778 VELGLLREEEKQrAARDHETAVKKLKAESERVKMELKKT--HAAETEMTLEKANSRLKQIEKE---YTQKLAKSSQIIAE 852
Cdd:pfam05483 534 KQIENLEEKEMN-LRDELESVREEFIQKGDEVKCKLDKSeeNARSIEYEVLKKEKQMKILENKcnnLKKQIENKNKNIEE 612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 853 LQTTISSLKEESS--RQQLAA--------ERRLQDVIQKFE---DEKQQLIRDNDQAIKALQDELETRSNQVRSA----- 914
Cdd:pfam05483 613 LHQENKALKKKGSaeNKQLNAyeikvnklELELASAKQKFEeiiDNYQKEIEDKKISEEKLLEEVEKAKAIADEAvklqk 692
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958657580 915 --EKKLQHKELEAQEQMMYIRQEYET------------KFKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEE 976
Cdd:pfam05483 693 eiDKRCQHKIAEMVALMEKHKHQYDKiieerdselglyKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
331-939 |
8.31e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 8.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 331 EKELDMKTKMMEAKFSEEKLKLQKK--HDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKvqiliRDCQVIRE 408
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEerNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK-----KKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 409 TKE-NQITELKKICEQS--TESLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELK 485
Cdd:PTZ00121 1298 AEEkKKADEAKKKAEEAkkADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 486 TRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDiNILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQED 565
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 566 KfhmEKNHLKYIYEEKvhELKSELDKEKEDAQrkihKFEEALKEKEEQLGRVTEVQRlqAQQADAALEEFKRQVEvtsEK 645
Cdd:PTZ00121 1457 K---KAEEAKKKAEEA--KKADEAKKKAEEAK----KADEAKKKAEEAKKKADEAKK--AAEAKKKADEAKKAEE---AK 1522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 646 VYSDMKEQMEKVEADlsRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQ----HNAEKDSLVRDHER 721
Cdd:PTZ00121 1523 KADEAKKAEEAKKAD--EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaeeaKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 722 EVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKK 801
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 802 LKAESE-RVKMELKKTHAAETEmtlekansRLKQIEKEYTQKLAKSSQIIAELQttISSLKEESSRQQLAAERRLQDVIQ 880
Cdd:PTZ00121 1681 KKAEEDeKKAAEALKKEAEEAK--------KAEELKKKEAEEKKKAEELKKAEE--ENKIKAEEAKKEAEEDKKKAEEAK 1750
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 881 KFEDEKQQlirdndqaIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETK 939
Cdd:PTZ00121 1751 KDEEEKKK--------IAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
587-976 |
8.65e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 8.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 587 SELDKEKEDA-------QRKIHKFEEALKEKEEQLGRVtEVQRLQAQQADAALEEfKRQVEVTSE-KVYSDMKEQMEKVE 658
Cdd:TIGR02169 166 AEFDRKKEKAleeleevEENIERLDLIIDEKRQQLERL-RREREKAERYQALLKE-KREYEGYELlKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 659 ADLSRskslREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLvRDHEREVENLENQLRAANMEHE 738
Cdd:TIGR02169 244 RQLAS----LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI-GELEAEIASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 739 nqiqeskkrdaqviaDMEAQVHKLREELinvnshRKQQLVELGLLREEEKQRAARDH-ETAVKKLKAESERVKMELKKth 817
Cdd:TIGR02169 319 ---------------DAEERLAKLEAEI------DKLLAEIEELEREIEEERKRRDKlTEEYAELKEELEDLRAELEE-- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 818 aaetemtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQqlaaerrlqdviqkfeDEKQQLIRDNDQAI 897
Cdd:TIGR02169 376 -------VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL----------------SEELADLNAAIAGI 432
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 898 KALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLmpaslrQELEDTISSLKSQVNFLQKRASILQEE 976
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY------DRVEKELSKLQRELAEAEAQARASEER 505
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
535-963 |
1.19e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQESE-------------------LQRKQQVKDQEDKFHMEKNHLKYIY---EEKVHELKsELDKE 592
Cdd:PRK03918 268 IEELKKEIEELEEKVKELKelkekaeeyiklsefyeeyLDELREIEKRLSRLEEEINGIEERIkelEEKEERLE-ELKKK 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 593 KEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEvTSEKVYSDMKEQMEKVEADLSRSKSlREKQS 672
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKEL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 673 KEFLWQLEDARQRYEQQIVELKLEHEQEkthLLQQHNAEKDSlVRDHEREVENLENQLRAANMEHENQIQESKKRDAQvi 752
Cdd:PRK03918 425 KKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELKR-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL-- 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 753 admeaqvHKLREELINVnshrKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHA-----AETEMTLEK 827
Cdd:PRK03918 499 -------KELAEQLKEL----EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkklAELEKKLDE 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 828 ANSRLKQIEKEYTQKLAKSsqiIAELQTTISSLKEESSR--QQLAAERRLQDVIQKFEDEKQQLirdnDQAIKALQD--- 902
Cdd:PRK03918 568 LEEELAELLKELEELGFES---VEELEERLKELEPFYNEylELKDAEKELEREEKELKKLEEEL----DKAFEELAEtek 640
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958657580 903 ELETRSNQVRSAEKKLQHKELE-AQEQMMYIRQEYETKFKGLMPA-SLRQELEDTISSLKSQV 963
Cdd:PRK03918 641 RLEELRKELEELEKKYSEEEYEeLREEYLELSRELAGLRAELEELeKRREEIKKTLEKLKEEL 703
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
293-964 |
1.51e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.83 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 293 ENPRYLRQKPLPVSLMTPKVSLRNSSNLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELE 372
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 373 ELKILYKKKQTETEETVRKLEKKVQILIRDcQVIRETKENQITELKKiceqsteslnnDWEKKNHMIKDLEGRVQQLMGE 452
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKE-KEEIEELEKELKELEI-----------KREAEEEEEEELEKLQEKLEQL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 453 AENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHtekeHLVNDYEQNVKLLKTKYDSDINILrqehalstsKTS 532
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLL----ELARQLEDLLKEEKKEELEILEEE---------EES 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 533 VVIEELEQNIRQLKQQVQESELQRKQQVKDQ-EDKFHMEKNHLKYIY-EEKVHELKSELDKEKEDAQRKIHKFEEALKEK 610
Cdd:pfam02463 439 IELKQGKLTEEKEELEKQELKLLKDELELKKsEDLLKETQLVKLQEQlELLLSRQKLEERSQKESKARSGLKVLLALIKD 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 611 EEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYS-DMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQ 689
Cdd:pfam02463 519 GVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATaDEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 690 IVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINV 769
Cdd:pfam02463 599 IDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 770 nshRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQI 849
Cdd:pfam02463 679 ---QELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 850 IAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQM 929
Cdd:pfam02463 756 RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEEL 835
|
650 660 670
....*....|....*....|....*....|....*
gi 1958657580 930 MYIRQEYETKFKGLMPASLRQELEDTISSLKSQVN 964
Cdd:pfam02463 836 EELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
534-979 |
3.60e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 534 VIEELEQNIRQLKQQVQES-ELQRKQ-----------QVKDQEdkFHMEKNHLKYIyeeKVHELKSELDKeKEDAQRKIH 601
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQkfylrqsvidlQTKLQE--MQMERDAMADI---RRRESQSQEDL-RNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 602 KFEEALKEKEEQLGRV-TEVQRLQAQ--QADAALEEFKRQV----EVTSEKVYS-DMKEQMEKVEADLSRSKSLREKQSK 673
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSnTQIEQLRKMmlSHEGVLQEIRSILvdfeEASGKKIYEhDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 674 efLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEhENQIQeskkrdaqvia 753
Cdd:pfam15921 233 --ISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ----------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 754 dmeAQVHKLREELINVNSHRKQQLVELgllreeekqraardhETAVKKLKAESERVKmELKKTHAAETEMTLEKANSRLK 833
Cdd:pfam15921 299 ---SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 834 QIEKEYTQKLAKSSQIIAELQTTISSLKEEssRQQLAAERrlqdviqkfEDEKQQLIRD--NDQAIKALQDELETRSNQV 911
Cdd:pfam15921 360 EARTERDQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDtgNSITIDHLRRELDDRNMEV 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 912 RSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 979
Cdd:pfam15921 429 QRLEALLKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
371-919 |
4.08e-08 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 57.06 E-value: 4.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 371 LEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESlnndwEKKNHMIKDLEGRVQQLM 450
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEA-----EEALREQAELNRLKKKYL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 451 GEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYdSDINILRQEHALSTSK 530
Cdd:pfam05557 86 EALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKA-SEAEQLRQNLEKQQSS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 531 TSVVIEELEQNIRQLKQQVQES--------------ELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEkEDA 596
Cdd:pfam05557 165 LAEAEQRIKELEFEIQSQEQDSeivknskselaripELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLERE-EKY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 597 QRKIHKFEealKEKEEQLGRVTEVQRLqAQQADAALeefkRQVEVTSEKVysdmkEQMEKVEADLSRSKSLREKQSKefl 676
Cdd:pfam05557 244 REEAATLE---LEKEKLEQELQSWVKL-AQDTGLNL----RSPEDLSRRI-----EQLQQREIVLKEENSSLTSSAR--- 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 677 wQLEDARQRYEQQIVELKLEHEQEKTHLLQQHN----AEKDSLVRDHERE-----VENLENQLraANMEHENQIQESKKR 747
Cdd:pfam05557 308 -QLEKARRELEQELAQYLKKIEDLNKKLKRHKAlvrrLQRRVLLLTKERDgyraiLESYDKEL--TMSNYSPQLLERIEE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 748 DAQVI-------ADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAE 820
Cdd:pfam05557 385 AEDMTqkmqahnEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQK 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 821 TEMTLEKANSRLKQiekEYTQKLAKssqiIAELQTTISSLKEESSRQQLAAER----RLQDVIQKFEDEKQQLIRDNDQA 896
Cdd:pfam05557 465 NELEMELERRCLQG---DYDPKKTK----VLHLSMNPAAEAYQQRKNQLEKLQaeieRLKRLLKKLEDDLEQVLRLPETT 537
|
570 580
....*....|....*....|...
gi 1958657580 897 IKALQDELETRSNQVRSAEKKLQ 919
Cdd:pfam05557 538 STMNFKEVLDLRKELESAELKNQ 560
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
650-980 |
4.37e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 4.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 650 MKEQMEKVEADLSRSKSLREKQSKEfLWQLEDARQRYEQQIVELKLEHEQekthLLQQHNAEKdslvrdheREVENLENQ 729
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENR-LDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLK--------ERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 730 LRAANMEHENQIQESKKRDAqVIADMEAQVHKLREELINVNshrkqqlvelgllreeekqraARDHETAVKKLKAESERV 809
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEALNDLE---------------------ARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 810 KMELKKthaaetemtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEessrqQLAAERRLQDVIQKFEDEKQQL 889
Cdd:TIGR02169 804 EEEVSR---------IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE-----QIKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 890 IRDNDQAIKALQDELetrsnqvrsaeKKLQHKELEAQEQMMYIRQEYetkfkglmpaslrQELEDTISSLKSQVNFLQKR 969
Cdd:TIGR02169 870 LEELEAALRDLESRL-----------GDLKKERDELEAQLRELERKI-------------EELEAQIEKKRKRLSELKAK 925
|
330
....*....|.
gi 1958657580 970 ASILQEELTTY 980
Cdd:TIGR02169 926 LEALEEELSEI 936
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
530-919 |
4.80e-08 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 56.77 E-value: 4.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 530 KTSVVIEELEQNIRQLKQQVQESeLQRKQQVKDQEDKFHMEKNHLKYIYEEkvheLKSELDkekedAQRkiHKFEEALKE 609
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLL-----ANR--FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 610 KEEQLgrvtevqrlqaQQADAALEEFKRQVE----VTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQR 685
Cdd:PRK04778 170 LEKQL-----------ENLEEEFSQFVELTEsgdyVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 686 YEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAAN---------MEHE----NQIQESKKRDAQV 751
Cdd:PRK04778 239 YRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTLPDF 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 752 IADMEAQVHKLREELinvnshrkQQLVELGLLREEEKQRaARDHETAVKKLKAESERVKMELKKTHAA--ETEMTLEKAN 829
Cdd:PRK04778 319 LEHAKEQNKELKEEI--------DRVKQSYTLNESELES-VRQLEKQLESLEKQYDEITERIAEQEIAysELQEELEEIL 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 830 SRLKQIEKEytqklakssqiIAELQTTISSLKEEssrqQLAAERRLQDVIQKFEDEKQQLIRDNDQAI-KALQDELETRS 908
Cdd:PRK04778 390 KQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSNLPGLpEDYLEMFFEVS 454
|
410
....*....|.
gi 1958657580 909 NQVRSAEKKLQ 919
Cdd:PRK04778 455 DEIEALAEELE 465
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
314-984 |
5.84e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 5.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 314 LRNSSNLHDDHFLSrMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERK-NNELEELKILYKKKQTETEETVRKL 392
Cdd:pfam15921 94 LNESNELHEKQKFY-LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQlQNTVHELEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 393 EKKVQILIRDCQVIRETK----ENQITELKKICEQ---STESLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKL-- 463
Cdd:pfam15921 173 EQLRKMMLSHEGVLQEIRsilvDFEEASGKKIYEHdsmSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALks 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 464 -TQEKLELErcyqitcseLQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDS---DINILRQEHALSTSKTSVVIEELE 539
Cdd:pfam15921 253 eSQNKIELL---------LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSiqsQLEIIQEQARNQNSMYMRQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 540 QNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEK--VHELKSELDKEKEDAQRKIHKFEEALKEKEEQ---- 613
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERdqFSQESGNLDDQLQKLLADLHKREKELSLEKEQnkrl 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 614 -------------LGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMK---EQMEKVEADLSRSKSLREKQSK--EF 675
Cdd:pfam15921 404 wdrdtgnsitidhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKvvEE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 676 LWQLEDARQRYEQQIVELKLEHeQEKTHLLQQHNAEKDSL---VRDHEREVENLENQ---LRAANMEHENQIQESKKRDa 749
Cdd:pfam15921 484 LTAKKMTLESSERTVSDLTASL-QEKERAIEATNAEITKLrsrVDLKLQELQHLKNEgdhLRNVQTECEALKLQMAEKD- 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 750 QVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKAN 829
Cdd:pfam15921 562 KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAG 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 830 SRLKQIEKEYTQKlakSSQIIAELQTTISSLKEESSRQQLAaERRLQDVIQKFEDEKQQLirdnDQAIKALQDELETRSN 909
Cdd:pfam15921 642 SERLRAVKDIKQE---RDQLLNEVKTSRNELNSLSEDYEVL-KRNFRNKSEEMETTTNKL----KMQLKSAQSELEQTRN 713
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958657580 910 QVRSAEKKLQHkeleAQEQMMYIRQEYETKfKGLMPA--SLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR 984
Cdd:pfam15921 714 TLKSMEGSDGH----AMKVAMGMQKQITAK-RGQIDAlqSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEK 785
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
535-888 |
1.26e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQESElqRKQQVKDQEdkfhmeknhlkyiYEEKVHELKsELDKEKEDAQRKIHKFEEALKEKEEQL 614
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELE--EDLSSLEQE-------------IENVKSELK-ELEARIEELEEDLHKLEEALNDLEARL 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 615 GRVtevqrlQAQQADAALEEFKRQVevtsekvySDMKEQMEKVEADLSRSKSLREkqskeflwQLEDARQRYEQQIVELK 694
Cdd:TIGR02169 789 SHS------RIPEIQAELSKLEEEV--------SRIEARLREIEQKLNRLTLEKE--------YLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 695 L--EHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQ---LRAANMEHENQIQESKKRdaqvIADMEAQVHKLREELinv 769
Cdd:TIGR02169 847 EqiKSIEKEIENLNGKKEELEEELEELEAALRDLESRlgdLKKERDELEAQLRELERK----IEELEAQIEKKRKRL--- 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 770 nshrKQQLVELGLLREEEKQ-RAARDHETAVKKLKAESERVKMELKKTHAAetEMTLEKANSRLKQiekEYtqklakssq 848
Cdd:TIGR02169 920 ----SELKAKLEALEEELSEiEDPKGEDEEIPEEELSLEDVQAELQRVEEE--IRALEPVNMLAIQ---EY--------- 981
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958657580 849 iiAELQTTISSLKEEssRQQLAAERR-LQDVIQKFEDEKQQ 888
Cdd:TIGR02169 982 --EEVLKRLDELKEK--RAKLEEERKaILERIEEYEKKKRE 1018
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
597-945 |
1.29e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.51 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 597 QRKIHKFE-EALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEkveadLSRSKSLREKQSKEF 675
Cdd:pfam17380 290 QEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE-----LERIRQEERKRELER 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 676 LWQLEDARQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQiqESKKRDAQVIAD 754
Cdd:pfam17380 365 IRQEEIAMEISRMRELErLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE--EARQREVRRLEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 755 MEA-QVHKLREElinvnSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRlK 833
Cdd:pfam17380 443 ERArEMERVRLE-----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR-K 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 834 QIEKEYTQKlaksSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLirdndqaiKALQDELETRsNQVRS 913
Cdd:pfam17380 517 LLEKEMEER----QKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------EAMEREREMM-RQIVE 583
|
330 340 350
....*....|....*....|....*....|..
gi 1958657580 914 AEKklQHKELEAQEQMMYIRQEYETKFKGLMP 945
Cdd:pfam17380 584 SEK--ARAEYEATTPITTIKPIYRPRISEYQP 613
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
626-863 |
6.25e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 6.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 626 QQADAALEEFKRqvevtsekvYSDMKEQMEKVEADLSRSKSLREKQSKefLWQLEDARQRYEQQIVELKLEHEQEKTHLL 705
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 706 QQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQ---QLVELGL 782
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 783 ---LREEEKQRAARDHETAVKKLKAESERVkmelkKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISS 859
Cdd:COG4913 374 plpASAEEFAALRAEAAALLEALEEELEAL-----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
....
gi 1958657580 860 LKEE 863
Cdd:COG4913 449 LAEA 452
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
349-927 |
7.13e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 7.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 349 KLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQITELKKiceqstesL 428
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNL--------L 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 429 NNDWEKKNHMIKDLegRVQQLMGEAENSNLQRQKLTQEKLElercyqitcSELQELKTRQNLLHTEKEHLVNDYEQNVKL 508
Cdd:TIGR04523 179 EKEKLNIQKNIDKI--KNKLLKLELLLSNLKKKIQKNKSLE---------SQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 509 LKTKydsdinilrqehalsTSKTSVVIEELEQNIRQLKQQVQESElQRKQQVKDQEDKFHMEKNHLKYIYEEKVH----E 584
Cdd:TIGR04523 248 ISNT---------------QTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQdwnkE 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 585 LKSEL---DKEKEDAQRKIHKFEEA---LKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKV--YSDMKEQMEK 656
Cdd:TIGR04523 312 LKSELknqEKKLEEIQNQISQNNKIisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENqsYKQEIKNLES 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 657 VEADLSRSKSLREKQSKEFLWQLEDARQRYEQQivelklehEQEKTHLLQQHNAEKDslvrdherEVENLENQLRAANME 736
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKELL--------EKEIERLKETIIKNNS--------EIKDLTNQDSVKELI 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 737 HENqIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRaardhETAVKKLKAESERVKMELKKT 816
Cdd:TIGR04523 456 IKN-LDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL-----EEKVKDLTKKISSLKEKIEKL 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 817 HAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSrQQLAAERRLQDVIQKFEDEKQQLIRDndqa 896
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQK-SLKKKQEEKQELIDQKEKEKKDLIKE---- 604
|
570 580 590
....*....|....*....|....*....|.
gi 1958657580 897 IKALQDELETRSNQVRSAEKKlqHKELEAQE 927
Cdd:TIGR04523 605 IEEKEKKISSLEKELEKAKKE--NEKLSSII 633
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
347-889 |
7.23e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 7.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 347 EEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTE 426
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 427 slnndwekknhmIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELErcyqitcselQELKTRQNLLHTEKEHLVNDYEQNV 506
Cdd:COG1196 402 ------------LEELEEAEEALLERLERLEEELEELEEALAELE----------EEEEEEEEALEEAAEEEAELEEEEE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 507 KLLKtkydsdinilrqehalstsktsvVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELK 586
Cdd:COG1196 460 ALLE-----------------------LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 587 SELDKEKEDAQRKIHKFEEALKEKEEQLG-RVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDmkeqmekVEADLSRSK 665
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD-------KIRARAALA 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 666 SLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHER--EVENLENQLRAANMEHENQIQE 743
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrEVTLEGEGGSAGGSLTGGSRRE 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 744 SKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEM 823
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 824 TLEKANSRLKQIEKEYTQKLAKSSQIIAEL----QTTISSLKEESSR-----QQLA----AERRLQDVIQKFEDEKQQL 889
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIEALgpvnLLAIEEYEELEERydflsEQREdleeARETLEEAIEEIDRETRER 828
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
482-968 |
7.68e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 7.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 482 QELKTRQNL---LHTEKEHLVNDYEQNVKLLKtKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQ--ESELQR 556
Cdd:pfam12128 248 QEFNTLESAelrLSHLHFGYKSDETLIASRQE-ERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAkdRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 557 KQQVKDQEDKFHMEKNHLKYIYEEKVH---ELKSELDKEKEDAQRKIHKFEEALKEKEEQlGRVTEVQRLQaQQADAALE 633
Cdd:pfam12128 327 LEDQHGAFLDADIETAAADQEQLPSWQselENLEERLKALTGKHQDVTAKYNRRRSKIKE-QNNRDIAGIK-DKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 634 EFKRQVEVTS---EKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYE----QQIVELKLEHEQEKthlLQ 706
Cdd:pfam12128 405 ARDRQLAVAEddlQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPElllqLENFDERIERAREE---QE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 707 QHNAEKDSLVRDHEREVENLENQLRAANMEHEnQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELglLREE 786
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASR-RLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKV--ISPE 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 787 EKQRAARDHETAVKKLKAESE--RVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELqTTISSLKEES 864
Cdd:pfam12128 559 LLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL-VQANGELEKA 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 865 SRQQLAAERRLQ---DVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKE-----------LEAQEQMM 930
Cdd:pfam12128 638 SREETFARTALKnarLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHqawleeqkeqkREARTEKQ 717
|
490 500 510
....*....|....*....|....*....|....*...
gi 1958657580 931 YIRQEYETKFKGLMpASLRQELEDTISSLKSQVNFLQK 968
Cdd:pfam12128 718 AYWQVVEGALDAQL-ALLKAAIAARRSGAKAELKALET 754
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
543-700 |
8.03e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 52.86 E-value: 8.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 543 RQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQR 622
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLE 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657580 623 LQAQQADAALEEFKRQvEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLwqLEDARQRYEQQIVELKLEHEQE 700
Cdd:PRK12704 107 KREEELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
314-919 |
9.70e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 9.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 314 LRNSSNLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKIL--YKKKQTETEETVRK 391
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 392 LEKKVQILIRDCQVIRETKENQITELKKICE--QSTESLNNDWEKKNHMIK---DLEGRVQQLMGEAENSNLQRQKLTQE 466
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEkaEAAEKKKEEAKKKADAAKkkaEEKKKADEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 467 KLELERCYQITCSELQELKTRQNLLHTEK----EHLVNDYEQNVKLLKTKYDSDiNILRQEHALSTSKTSVVIEELEQNI 542
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEakkaDEAKKKAEEAKKAEEAKKKAE-EAKKADEAKKKAEEAKKADEAKKKA 1492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 543 RQLKQQVQESELQRKQQVKDQEDKFHMEKNHL----KYIYEEKVHELKSELDKEKEDAQRK---------IHKFEEALKE 609
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeakKAEEAKKADEAKKAEEKKKADELKKaeelkkaeeKKKAEEAKKA 1572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 610 KEEQLGRVTEVQrlQAQQADAALEEfkrQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKqskeflwqlEDARQRYEQq 689
Cdd:PTZ00121 1573 EEDKNMALRKAE--EAKKAEEARIE---EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA---------EEEKKKVEQ- 1637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 690 iveLKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHEnqiQESKKRDAQviadmeaQVHKLREELINV 769
Cdd:PTZ00121 1638 ---LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA---EEDEKKAAE-------ALKKEAEEAKKA 1704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 770 NSHRKQQlvelgllrEEEKQRAAR-DHETAVKKLKAESERVKMELKKTHAAEtemtLEKANSRLKQIEKEYTQKLAKSSQ 848
Cdd:PTZ00121 1705 EELKKKE--------AEEKKKAEElKKAEEENKIKAEEAKKEAEEDKKKAEE----AKKDEEEKKKIAHLKKEEEKKAEE 1772
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657580 849 IIAELQTTISS-LKEESSRQQLAAERRLQD------VIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQ 919
Cdd:PTZ00121 1773 IRKEKEAVIEEeLDEEDEKRRMEVDKKIKDifdnfaNIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
545-888 |
1.46e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.43 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 545 LKQQVQESELQRKQQVKDQEDKFH-MEKNHLKYIYEEKVHELKSELD-KEKEDAQRKIHKFEEALKEKEEQLG--RVTEV 620
Cdd:pfam17380 271 LNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREVERRRKlEEAEKARQAEMDRQAAIYAEQERMAmeREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 621 QRLQAQQADAALEEFKRQ-VEVTSEKVYSDMKEQMEKVEADlSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQ 699
Cdd:pfam17380 351 ERIRQEERKRELERIRQEeIAMEISRMRELERLQMERQQKN-ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 700 EKTHLLQQHNAEKDslvRDHEREVENLENQLRAANMEHENQiQESKKRDAQVIADMEAQVHKLREELinvnshrKQQLVE 779
Cdd:pfam17380 430 EEARQREVRRLEEE---RAREMERVRLEEQERQQQVERLRQ-QEEERKRKKLELEKEKRDRKRAEEQ-------RRKILE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 780 LGLlreEEKQRAARDHETAVKKLKAEservkMELKKTHAAETEMTLEKANSRLKQIEKEYTQKlakssqiiaeLQTTISS 859
Cdd:pfam17380 499 KEL---EERKQAMIEEERKRKLLEKE-----MEERQKAIYEEERRREAEEERRKQQEMEERRR----------IQEQMRK 560
|
330 340
....*....|....*....|....*....
gi 1958657580 860 LKEESSRQQlAAERRLQDVIQKFEDEKQQ 888
Cdd:pfam17380 561 ATEERSRLE-AMEREREMMRQIVESEKAR 588
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
347-892 |
1.95e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.03 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 347 EEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTeteeTVRKLEKKVQILIRDCQVIRETKENQITELKKiCEQSTE 426
Cdd:pfam05483 274 EEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMS----TQKALEEDLQIATKTICQLTEEKEAQMEELNK-AKAAHS 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 427 SLNNDWEKKNHMIKDLEGRVQQLMgeaENSNLQRQKLTQEklelercYQITCSELQELKTRQNLLHTEKEHLVNDYEQNV 506
Cdd:pfam05483 349 FVVTEFEATTCSLEELLRTEQQRL---EKNEDQLKIITME-------LQKKSSELEEMTKFKNNKEVELEELKKILAEDE 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 507 KLLKTKYDsdinilrqehalstsktsvvIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYiYEEKVHELK 586
Cdd:pfam05483 419 KLLDEKKQ--------------------FEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEH-YLKEVEDLK 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 587 SELDKEK-EDAQRKIHKFEEALKEKEeqlgrvtevqrLQAQQADAALEEFKRQVEVTSEKVYSD-MKEQMEKVEADLSRS 664
Cdd:pfam05483 478 TELEKEKlKNIELTAHCDKLLLENKE-----------LTQEASDMTLELKKHQEDIINCKKQEErMLKQIENLEEKEMNL 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 665 KSLREKQSKEFLWQLEDarqryeqqiVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQES 744
Cdd:pfam05483 547 RDELESVREEFIQKGDE---------VKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQEN 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 745 KKRDAQVIAD------MEAQVHKLREELIN--------VNSHRKQ----QLVELGLLREEEKQRAARDHETAVKK---LK 803
Cdd:pfam05483 618 KALKKKGSAEnkqlnaYEIKVNKLELELASakqkfeeiIDNYQKEiedkKISEEKLLEEVEKAKAIADEAVKLQKeidKR 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 804 AESERVKM-ELKKTHAAETEMTLEKANSRLKQiekeYTQKLAKSSQIIAELQTTISSLKEE--SSRQQLAAERRLQDVIQ 880
Cdd:pfam05483 698 CQHKIAEMvALMEKHKHQYDKIIEERDSELGL----YKNKEQEQSSAKAALEIELSNIKAEllSLKKQLEIEKEEKEKLK 773
|
570
....*....|..
gi 1958657580 881 KFEDEKQQLIRD 892
Cdd:pfam05483 774 MEAKENTAILKD 785
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
517-729 |
2.44e-06 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 51.58 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 517 INILRQEHALstsKTSVVIEELEQNIRQLKqqvqeseLQRKQQVKDqedkfhmeknhlkyiyeekVHELKSELDKEKEDA 596
Cdd:pfam10168 541 TQVFREEYLK---KHDLAREEIQKRVKLLK-------LQKEQQLQE-------------------LQSLEEERKSLSERA 591
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 597 QRKIHKFEEALKEKEEQLGRVTEV-QRLQAQQADAALEE--FKRQVEvtsekvysDMKEQMEKVEADLSRSKSLREKQSK 673
Cdd:pfam10168 592 EKLAEKYEEIKDKQEKLMRRCKKVlQRLNSQLPVLSDAEreMKKELE--------TINEQLKHLANAIKQAKKKMNYQRY 663
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958657580 674 eflwQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDhereVENLENQ 729
Cdd:pfam10168 664 ----QIAKSQSIRKKSSLSLSEKQRKTIKEILKQLGSEIDELIKQ----VKDINKH 711
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
644-984 |
3.67e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 644 EKVYSDMKEQMEKVEADLSRSKSLREKQsKEFLwqledarqryEQQIVELKLEheqekthlLQQHNAEKDSLVRDHEREV 723
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQ-KFYL----------RQSVIDLQTK--------LQEMQMERDAMADIRRRES 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 724 ---ENLENQLRaaNMEHENQIQESKKRDaqVIADMEAQVHKLreelinvnshRKQQLVELGLLREeekqraardhetaVK 800
Cdd:pfam15921 138 qsqEDLRNQLQ--NTVHELEAAKCLKED--MLEDSNTQIEQL----------RKMMLSHEGVLQE-------------IR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 801 KLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESsrqqlaaERRLQDVIQ 880
Cdd:pfam15921 191 SILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES-------QNKIELLLQ 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 881 KFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQ-MMYIRQEYETKFkglMPASLRQELEDTISSL 959
Cdd:pfam15921 264 QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnSMYMRQLSDLES---TVSQLRSELREAKRMY 340
|
330 340
....*....|....*....|....*
gi 1958657580 960 KSQVNFLQKRASILQEELTTYQSRR 984
Cdd:pfam15921 341 EDKIEELEKQLVLANSELTEARTER 365
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
389-789 |
4.17e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 4.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 389 VRKLEKKVQILIRDCQVIRETKENQITELKKICEQsTESLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKL 468
Cdd:pfam15921 428 VQRLEALLKAMKSECQGQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 469 ELERCYQITCSELQELKTRQNLLHTEKEHLVN--DYEQNV-------KLLKTKYDSDINILRQEhalstsktsvvIEELE 539
Cdd:pfam15921 507 EKERAIEATNAEITKLRSRVDLKLQELQHLKNegDHLRNVqtecealKLQMAEKDKVIEILRQQ-----------IENMT 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 540 QNIRQLKQQVQESELQRKQQVKDQEDKfHMEKNHLKYIYEEKVHELKsELDKEKEDAQRKIHKFEEAlkeKEEQLGRVTE 619
Cdd:pfam15921 576 QLVGQHGRTAGAMQVEKAQLEKEINDR-RLELQEFKILKDKKDAKIR-ELEARVSDLELEKVKLVNA---GSERLRAVKD 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 620 VQrlqaQQADAALEEFKrqvevTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELK-LE-- 696
Cdd:pfam15921 651 IK----QERDQLLNEVK-----TSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKsMEgs 721
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 697 --HEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEhENQIQESKkrdaqviadmeaqvHKLREELINVNSHRK 774
Cdd:pfam15921 722 dgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE-KHFLKEEK--------------NKLSQELSTVATEKN 786
|
410
....*....|....*
gi 1958657580 775 QQLVELGLLREEEKQ 789
Cdd:pfam15921 787 KMAGELEVLRSQERR 801
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
336-919 |
4.58e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 4.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 336 MKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEEtvrkLEKKVQILIRDcqviRETKENQIT 415
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEE----LENELNLLEKE----KLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 416 ELKKICEQSTESLNNdWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEK 495
Cdd:TIGR04523 191 KIKNKLLKLELLLSN-LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 496 EHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQ------QVKDQEDKFHM 569
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQnnkiisQLNEQISQLKK 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 570 EKNHLKYIYEEKVHELK---SELDKEKEDAQRKIHKFEEaLKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTsEKV 646
Cdd:TIGR04523 350 ELTNSESENSEKQRELEekqNEIEKLKKENQSYKQEIKN-LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL-EKE 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 647 YSDMKEQMEKVEA---DLSRSKSLREKQSKEflwqLEDARQRYEQQIVELKLEHEQEKTHLLQQhnaekdslvrdhEREV 723
Cdd:TIGR04523 428 IERLKETIIKNNSeikDLTNQDSVKELIIKN----LDNTRESLETQLKVLSRSINKIKQNLEQK------------QKEL 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 724 ENLENQLraanmeheNQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLK 803
Cdd:TIGR04523 492 KSKEKEL--------KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEI 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 804 AESERVKMELKkthaaETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQlAAERRLQDVIQKFE 883
Cdd:TIGR04523 564 DEKNKEIEELK-----QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK-KENEKLSSIIKNIK 637
|
570 580 590
....*....|....*....|....*....|....*.
gi 1958657580 884 DEKQQLIrdndQAIKALQDELETRSNQVRSAEKKLQ 919
Cdd:TIGR04523 638 SKKNKLK----QEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
532-976 |
5.39e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 5.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 532 SVVIEELEQNIRQL-KQQVQESELQrKQQVKDQEDKFHMEKNHLKyIYEEKVHELKsELDKEKEDAQRKIHKFEEALKEK 610
Cdd:COG4717 45 AMLLERLEKEADELfKPQGRKPELN-LKELKELEEELKEAEEKEE-EYAELQEELE-ELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 611 EEQLGRVTEVQRLQaqQADAALEEFKRQVEVTSEKV--YSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQ 688
Cdd:COG4717 122 EKLLQLLPLYQELE--ALEAELAELPERLEELEERLeeLRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 689 QIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELIN 768
Cdd:COG4717 200 ELEELQQRLAELEEEL-----EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 769 V---------------------------NSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAET 821
Cdd:COG4717 275 IagvlflvlgllallflllarekaslgkEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 822 EMTLEKANSRLKQIEKEYTQKLAKSSQI-------IAELQTTISSLKEE--SSRQQLAAERRLQDVIQKFEDEKQ--QLI 890
Cdd:COG4717 355 EAEELEEELQLEELEQEIAALLAEAGVEdeeelraALEQAEEYQELKEEleELEEQLEELLGELEELLEALDEEEleEEL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 891 RDNDQAIKALQDELETRSNQVRSAEKKLqhKELEAQEQMMYIRQEYETKfkglmpASLRQELEDTISSLKSQVNFLQKRA 970
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAEL--EQLEEDGELAELLQELEEL------KAELRELAEEWAALKLALELLEEAR 506
|
....*.
gi 1958657580 971 SILQEE 976
Cdd:COG4717 507 EEYREE 512
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
459-827 |
5.80e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 5.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 459 QRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEEL 538
Cdd:pfam02463 673 KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 539 EQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVT 618
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 619 EVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHE 698
Cdd:pfam02463 833 EELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLL 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 699 QEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRdaqviadmEAQVHKLREELINVNSHRKQQLV 778
Cdd:pfam02463 913 EEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER--------NKRLLLAKEELGKVNLMAIEEFE 984
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1958657580 779 ELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEK 827
Cdd:pfam02463 985 EKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGW 1033
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
528-670 |
6.99e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 50.21 E-value: 6.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 528 TSKTSVVIEELEQNIRQLKQQVQESELQRKQQvkdqeDKFHMEknhlkyiYEEKVHELKSELDKEKEDAQRKIHK-FEEA 606
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA-----EKLKEE-------LEEKKEKLQEEEDKLLEEAEKEAQQaIKEA 582
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 607 LKEKEEQLGRVTEVQRLQ-----AQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREK 670
Cdd:PRK00409 583 KKEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
326-982 |
7.52e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 7.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 326 LSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEK---------KV 396
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEiehnlskimKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 397 QILIRDCQVIRETKENQITELKKICEQ----STESLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELER 472
Cdd:TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLV 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 473 cyQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINIlrqehalsTSKTSVVIEELEQNIRQLKQQVqeS 552
Cdd:TIGR00606 348 --EQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQI--------KNFHTLVIERQEDEAKTAAQLC--A 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 553 ELQRKQQVK-DQEDKFHMEKNHLKYIYEEKvhelKSELDKEKEDAQRKIHKFEEALKEKEEQLGRvteVQRLQAQQADAA 631
Cdd:TIGR00606 416 DLQSKERLKqEQADEIRDEKKGLGRTIELK----KEILEKKQEELKFVIKELQQLEGSSDRILEL---DQELRKAERELS 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 632 LEEFKRQVEVTSEKVYSDMKEQME----KVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQ 707
Cdd:TIGR00606 489 KAEKNSLTETLKKEVKSLQNEKADldrkLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGY 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 708 HNAEK--DSLVRDHEREVENLENQLRAANMEHEnQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQlVELGLLRE 785
Cdd:TIGR00606 569 FPNKKqlEDWLHSKSKEINQTRDRLAKLNKELA-SLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEE-SDLERLKE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 786 E----EKQRAARDHETAVK----------------------KLKAESERVKMELK-KTHAAETEmtLEKANSRLKQIEKE 838
Cdd:TIGR00606 647 EieksSKQRAMLAGATAVYsqfitqltdenqsccpvcqrvfQTEAELQEFISDLQsKLRLAPDK--LKSTESELKKKEKR 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 839 YTQKLAKSSQIIAELQTTISSLKEESSRQQlAAERRLQDVIQKFEDEKQQL--IRDNDQAIKALQDEL--------ETRS 908
Cdd:TIGR00606 725 RDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLgtIMPEEESAKVCLTDVtimerfqmELKD 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 909 NQVRSAEKKLQHKELEAQEQMMYIRQEYETK--------FKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTY 980
Cdd:TIGR00606 804 VERKIAQQAAKLQGSDLDRTVQQVNQEKQEKqheldtvvSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRR 883
|
..
gi 1958657580 981 QS 982
Cdd:TIGR00606 884 QQ 885
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
717-984 |
9.56e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 9.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 717 RDHEREVENLENQLRAANMEHENQIQESKKRDAQ----VIADMEAQVHKLREEL---------INVNSHRKQQLVELGLL 783
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEeleaELEELEAELAELEAELeelrleleeLELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 784 REEEKQRAARDHETAVKKLKAESERVKMELKKTHA---------AETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQ 854
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEeleeleeelEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 855 TTISSLKEEssRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQ 934
Cdd:COG1196 376 EAEEELEEL--AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958657580 935 EYEtkfkglmpasLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR 984
Cdd:COG1196 454 LEE----------EEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
348-983 |
1.32e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 348 EKLKLQKKHDAEVQKILERKNNELEEL------KILYKKKQTETEET--------VRKLEKKVQILIRDCQVIRETKEN- 412
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLrrerekAERYQALLKEKREYegyellkeKEALERQKEAIERQLASLEEELEKl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 413 --QITELKKICEQSTESLNNDWEKKNHM-----------IKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCS 479
Cdd:TIGR02169 257 teEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvkekIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 480 ELQELKTRQNLLHTEKEHLVNDYEQnvklLKTKYD---SDINILRQEHALSTSKTSVVIEELEQNIRQLKQ-QVQESELQ 555
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAE----LKEELEdlrAELEEVDKEFAETRDELKDYREKLEKLKREINElKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 556 RKQQVKDQEDKFHmeKNHLKYIYEEKvhelkSELDKEKEDAQRKIHKFEEALKEKEEQLGRV--------TEVQRLQAQQ 627
Cdd:TIGR02169 413 EELQRLSEELADL--NAAIAGIEAKI-----NELEEEKEDKALEIKKQEWKLEQLAADLSKYeqelydlkEEYDRVEKEL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 628 ADAALE----EFKRQVEVTSEKVYSDMKEQMEK----VEADLSRSKSLREKQSKeflwQLEDARQRYEQQIVELKLEHEQ 699
Cdd:TIGR02169 486 SKLQRElaeaEAQARASEERVRGGRAVEEVLKAsiqgVHGTVAQLGSVGERYAT----AIEVAAGNRLNNVVVEDDAVAK 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 700 EKTHLLQQHNAEKDSL-----VRDHEREVENLENQLR---AANM-EHENQIQESKK---RDAQVIADMEAQvhklREELI 767
Cdd:TIGR02169 562 EAIELLKRRKAGRATFlplnkMRDERRDLSILSEDGVigfAVDLvEFDPKYEPAFKyvfGDTLVVEDIEAA----RRLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 768 NV-----------------NSHRKQQLVELGLLREEEKQRAARDHEtavKKLKAESERVKMELK--KTHAAETEMTLEKA 828
Cdd:TIGR02169 638 KYrmvtlegelfeksgamtGGSRAPRGGILFSRSEPAELQRLRERL---EGLKRELSSLQSELRriENRLDELSQELSDA 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 829 NSRLKQIEKEYT---QKLAKSSQIIAELQTTISSLKEE-----SSRQQLAAE-RRLQDVIQKFEDEKQQL-IRDNDQAIK 898
Cdd:TIGR02169 715 SRKIGEIEKEIEqleQEEEKLKERLEELEEDLSSLEQEienvkSELKELEARiEELEEDLHKLEEALNDLeARLSHSRIP 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 899 ALQDELETRSNQVRSAEKKLQhkELEAQEQMMYIRQEY-ETKFKGLMpaSLRQELEDTISSLKSQVNFLQKRASILQEEL 977
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLR--EIEQKLNRLTLEKEYlEKEIQELQ--EQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
....*.
gi 1958657580 978 TTYQSR 983
Cdd:TIGR02169 871 EELEAA 876
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
331-675 |
1.87e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 331 EKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETK 410
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 411 ENQITELKKICEQSTESLNNDWEKKNHMIKDLEGRVQQLMGEAEN-SNLQRQKLTQEKLELERCYQITCSELQELKTRQN 489
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEErEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 490 LLHTEKEHLVN--DYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKF 567
Cdd:pfam02463 815 ELLEEEQLLIEqeEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 568 HMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVY 647
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGK 974
|
330 340
....*....|....*....|....*...
gi 1958657580 648 SDMKEQMEKVEADLSRSKSLREKQSKEF 675
Cdd:pfam02463 975 VNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-765 |
2.35e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 525 ALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYI--YEEKVHELKSEL---DKEKEDAQRK 599
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELaalEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 600 IHKFEEALKEKEEQLGRVTEVQRLQAQQADAAL-------EEFKRQVEVTSEkVYSDMKEQMEKVEADLSRSKSLREkqs 672
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALllspedfLDAVRRLQYLKY-LAPARREQAEELRADLAELAALRA--- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 673 keflwQLEDARQRYEQQIVELKLEHEQekthlLQQHNAEKDSLVRDHEREVENLENQLRaanmehenQIQESKKRDAQVI 752
Cdd:COG4942 168 -----ELEAERAELEALLAELEEERAA-----LEALKAERQKLLARLEKELAELAAELA--------ELQQEAEELEALI 229
|
250
....*....|...
gi 1958657580 753 ADMEAQVHKLREE 765
Cdd:COG4942 230 ARLEAEAAAAAER 242
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
530-929 |
3.31e-05 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 47.54 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 530 KTSVVIEELEQNIRQLKQQVQESeLQRKQQVKDQEDKFHMEKNHLKYIYEEkvheLKSELDkekedAQRkiHKFEEALKE 609
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRE----LRKTLL-----ANR--FSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 610 KEEQLgrvtevqrlqaqqaDAALEEFKRQVEVTSE-------KVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDA 682
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 683 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAAN---------MEHE----NQIQESKKRD 748
Cdd:pfam06160 217 KEGYREMEEEgYALEHLNVDKEIQQLEEQLEENLALLENLELDEAEEALEEIEeridqlydlLEKEvdakKYVEKNLPEI 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 749 AQVIADMEAQVHKLREELinvnshrkQQLVELGLLREEEKQRaARDHETAVKKLKAESERVKMELKKTHAAETEMT--LE 826
Cdd:pfam06160 297 EDYLEHAEEQNKELKEEL--------ERVQQSYTLNENELER-VRGLEKQLEELEKRYDEIVERLEEKEVAYSELQeeLE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 827 KANSRLKQIEKEytqklakssqiIAELQTTISSL-KEESSRQQLAAE--RRLQDVIQKFE--------DEKQQLIRDNDQ 895
Cdd:pfam06160 368 EILEQLEEIEEE-----------QEEFKESLQSLrKDELEAREKLDEfkLELREIKRLVEksnlpglpESYLDYFFDVSD 436
|
410 420 430
....*....|....*....|....*....|....
gi 1958657580 896 AIKALQDELetrsNQVRSAEKKLQHKELEAQEQM 929
Cdd:pfam06160 437 EIEDLADEL----NEVPLNMDEVNRLLDEAQDDV 466
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
370-982 |
3.43e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 370 ELEELKIlYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESLNNDWEKKNHMIKDLEGRVQQL 449
Cdd:TIGR00618 171 NLFPLDQ-YTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKR 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 450 mgEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNL------LHTEKEHlVNDYEQNVKLLKTKYDSDINILRQE 523
Cdd:TIGR00618 250 --EAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRarkaapLAAHIKA-VTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 524 --HALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQ--VKDQEDKFHMEKNHLKYIYEEKVHELKSE--LDKEKEDAQ 597
Cdd:TIGR00618 327 lmKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAtsIREISCQQHTLTQHIHTLQQQKTTLTQKLqsLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 598 RKIHKFE-EALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKvysdMKEQMEKVEADLSRSKSLREKQSKEFL 676
Cdd:TIGR00618 407 REQATIDtRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK----LEKIHLQESAQSLKEREQQLQTKEQIH 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 677 WQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL---------------VRDHEREVENLENQL------RAANM 735
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpgpltrrmqrgeqtYAQLETSEEDVYHQLtserkqRASLK 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 736 EHENQIQESKKRDAQVIADMEAQVHKLREELINV------NSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESErv 809
Cdd:TIGR00618 563 EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLqdltekLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQE-- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 810 kMELKKTHAAETEMTLEKANSRLKQIEKEyTQKLAKSSQIIAELQttisslKEESSRQQLAAERRLQDVIQKFEDEKQQL 889
Cdd:TIGR00618 641 -LALKLTALHALQLTLTQERVREHALSIR-VLPKELLASRQLALQ------KMQSEKEQLTYWKEMLAQCQTLLRELETH 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 890 IRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMPASLRQELEDT-ISSLKSQVNFLQK 968
Cdd:TIGR00618 713 IEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAeLSHLAAEIQFFNR 792
|
650
....*....|....
gi 1958657580 969 RASILQEELTTYQS 982
Cdd:TIGR00618 793 LREEDTHLLKTLEA 806
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
348-873 |
4.03e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.74 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 348 EKLKLQKKHDAEVQKILERKNNELEELKilyKKKQTETEETVRKLEKKVQILI--------RDCQVIRETKENQITELKk 419
Cdd:TIGR01612 1229 EKIDEEKKKSEHMIKAMEAYIEDLDEIK---EKSPEIENEMGIEMDIKAEMETfnishdddKDHHIISKKHDENISDIR- 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 420 icEQSTESLNNDWEKKNhmIKDLEGRVQQLMGEAENSNlqrQKLTQEKLELERCYQITcselqELKTRQNLLHTEKEHL- 498
Cdd:TIGR01612 1305 --EKSLKIIEDFSEESD--INDIKKELQKNLLDAQKHN---SDINLYLNEIANIYNIL-----KLNKIKKIIDEVKEYTk 1372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 499 -VNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVV-------IEELEQNIRQLKQQVQESELQRKQQVKDQED----- 565
Cdd:TIGR01612 1373 eIEENNKNIKDELDKSEKLIKKIKDDINLEECKSKIEstlddkdIDECIKKIKELKNHILSEESNIDTYFKNADEnnenv 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 566 -----KFHMEKNHLKYIYEEK-----------VHELK----------SELDKEKEDAQRKIHKFEEALKEKEEQLGRVTE 619
Cdd:TIGR01612 1453 lllfkNIEMADNKSQHILKIKkdnatndhdfnINELKehidkskgckDEADKNAKAIEKNKELFEQYKKDVTELLNKYSA 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 620 VqrlqaqqadaALEEFKRQVEVTSEKVYSDMKEQMEKV--EADLSRSKsLREKQSKEFLWQLEDARQ-RYEQQIVELKLE 696
Cdd:TIGR01612 1533 L----------AIKNKFAKTKKDSEIIIKEIKDAHKKFilEAEKSEQK-IKEIKKEKFRIEDDAAKNdKSNKAAIDIQLS 1601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 697 HEQEKTHLLQQHNAEKDSlvRDHEREVENLENQLRA-----------ANMEHENQIQ---ESKKRDAQVIADMEAQVHKL 762
Cdd:TIGR01612 1602 LENFENKFLKISDIKKKI--NDCLKETESIEKKISSfsidsqdtelkENGDNLNSLQeflESLKDQKKNIEDKKKELDEL 1679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 763 REEL----INVNSHRKQqlVELGLLRE-EEKQRAARDHETAVKKL-KAESERVKMELKKT--HAAETEMTLEKANSRLKQ 834
Cdd:TIGR01612 1680 DSEIekieIDVDQHKKN--YEIGIIEKiKEIAIANKEEIESIKELiEPTIENLISSFNTNdlEGIDPNEKLEEYNTEIGD 1757
|
570 580 590
....*....|....*....|....*....|....*....
gi 1958657580 835 IEKEYTqklaKSSQIIAELQTTISslKEESSRQQLAAER 873
Cdd:TIGR01612 1758 IYEEFI----ELYNIIAGCLETVS--KEPITYDEIKNTR 1790
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
454-969 |
4.83e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 47.44 E-value: 4.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 454 ENSNLQRQKLTQEKLELE---RCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSK 530
Cdd:pfam07111 87 ETSLQQKMRLEAQAMELDalaVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSS 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 531 TSVVIEELEQN-----------IRQLKQQVQESELQRKQQVKDQED---KFHMEKNHLKYIYEEKVHELKSEldkEKEDA 596
Cdd:pfam07111 167 LTSKAEGLEKSlnsletkrageAKQLAEAQKEAELLRKQLSKTQEEleaQVTLVESLRKYVGEQVPPEVHSQ---TWELE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 597 QRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAAL----EEFKRQVEVT-------SEKVYSDMKEQMEKVEADLSRSK 665
Cdd:pfam07111 244 RQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLalqeEELTRKIQPSdslepefPKKCRSLLNRWREKVFALMVQLK 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 666 SlREKQSKEFLWQLEDarqryeqQIVELkleheQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHeNQIQESK 745
Cdd:pfam07111 324 A-QDLEHRDSVKQLRG-------QVAEL-----QEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMEL-SRAQEAR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 746 KRDAQVIADMEAQvhkLREELINVNShrKQQLVELGLLREEEkqraardhetAVKKLKAESERVKMELKKTHAAETEMTL 825
Cdd:pfam07111 390 RRQQQQTASAEEQ---LKFVVNAMSS--TQIWLETTMTRVEQ----------AVARIPSLSNRLSYAVRKVHTIKGLMAR 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 826 EKAnsrLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSR----QQLAAERRLQDV---IQKFEDEKQQLIRDNDQAIK 898
Cdd:pfam07111 455 KVA---LAQLRQESCPPPPPAPPVDADLSLELEQLREERNRldaeLQLSAHLIQQEVgraREQGEAERQQLSEVAQQLEQ 531
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657580 899 ALQDELETRSNQVRSAEKKLQHKElEAQEQMMYIRQEYeTKFKGLMPASLRQELEDTISSLKSQVNFLQKR 969
Cdd:pfam07111 532 ELQRAQESLASVGQQLEVARQGQQ-ESTEEAASLRQEL-TQQQEIYGQALQEKVAEVETRLREQLSDTKRR 600
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
714-920 |
5.49e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 5.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 714 SLVRDHEREVENLENQLRAANME---HENQIQESKKRDAQVIADMEAQVHKLREELINVnshrKQQLVELG-----LLRE 785
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQiktYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI----KAEIEELTdellnLVMD 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 786 EEKQRAA-RDHETAVKKLKAESERVKMELK-----------KTHAAETEMTLEKANSRLKQIEKEYTQ---KLAKSSQII 850
Cdd:PHA02562 250 IEDPSAAlNKLNTAAAKIKSKIEQFQKVIKmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKldtAIDELEEIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 851 AELQTTISSLKE-----ESSRQQLAAER----RLQDVIQKFEDEKQqlirDNDQAIKALQDELETRSNQVRSAEKKLQH 920
Cdd:PHA02562 330 DEFNEQSKKLLElknkiSTNKQSLITLVdkakKVKAAIEELQAEFV----DNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
536-896 |
5.60e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.93 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 536 EELEQNIRQLKQQVQESeLQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLG 615
Cdd:NF033838 61 KEVESHLEKILSEIQKS-LDKRKHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTSKTKKELDAAFEQFKKDTLEPGK 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 616 RVTEVQRLQA---QQADAALEEFKRQVEVTSEKVYsdmkeQMEKVEADLSRSKSLREkqskefLWQLEDARQRYEQQI-- 690
Cdd:NF033838 140 KVAEATKKVEeaeKKAKDQKEEDRRNYPTNTYKTL-----ELEIAESDVEVKKAELE------LVKEEAKEPRDEEKIkq 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 691 VELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQiQESKKRDAQVIADMEAQVHKLREELINVN 770
Cdd:NF033838 209 AKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQ-DKPKRRAKRGVLGEPATPDKKENDAKSSD 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 771 SHRKQQLVELGLLREEEK-QRAARDHETAVKKLKAESErvkmELKKTHAAETEMTLE----KANSRLKQIEKEYTQKLAK 845
Cdd:NF033838 288 SSVGEETLPSPSLKPEKKvAEAEKKVEEAKKKAKDQKE----EDRRNYPTNTYKTLEleiaESDVKVKEAELELVKEEAK 363
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1958657580 846 SS---QIIAELQTTISSLKEESSRQQlaaerRLQDVIQKFEDEKQQLIRDNDQA 896
Cdd:NF033838 364 EPrneEKIKQAKAKVESKKAEATRLE-----KIKTDRKKAEEEAKRKAAEEDKV 412
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
417-887 |
5.85e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 5.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 417 LKKICEQSTESLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKE 496
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 497 HLVNDYE-QNVKLLKTKYDSDINILRQEHAlstsktsvVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLK 575
Cdd:COG4717 127 LLPLYQElEALEAELAELPERLEELEERLE--------ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 576 YIYEEkVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAAL------------EEFKRQVEVT- 642
Cdd:COG4717 199 EELEE-LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIaaallallglggSLLSLILTIAg 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 643 ---------------SEKVYSDMKEQMEKVEAdLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQ 707
Cdd:COG4717 278 vlflvlgllallfllLAREKASLGKEAEELQA-LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 708 HNAEKDSLVRDHEREVENLenqLRAANMEHENQIQEskkrdaqvIADMEAQVHKLREELINVNShrkqqlvelgLLREEE 787
Cdd:COG4717 357 EELEEELQLEELEQEIAAL---LAEAGVEDEEELRA--------ALEQAEEYQELKEELEELEE----------QLEELL 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 788 KQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKA--NSRLKQIEKEytQKLAKSSQIIAELQTTISSLKEESS 865
Cdd:COG4717 416 GELEELLEALDEEELEEELEELEEELEELEEELEELREELAelEAELEQLEED--GELAELLQELEELKAELRELAEEWA 493
|
490 500
....*....|....*....|..
gi 1958657580 866 RQQLAAErRLQDVIQKFEDEKQ 887
Cdd:COG4717 494 ALKLALE-LLEEAREEYREERL 514
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
582-919 |
6.94e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.87 E-value: 6.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 582 VHELKSELDKEKEDAQRKIH--KFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVysdmKEQMEKVEA 659
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTsdKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDI 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 660 DLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHL---LQQHNAEKDSLVRDHEREvenlenqLRAANME 736
Cdd:COG5185 308 KKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLtenLEAIKEEIENIVGEVELS-------KSSEELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 737 HENQIQESKKRDAQVIadMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKT 816
Cdd:COG5185 381 SFKDTIESTKESLDEI--PQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREAD 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 817 haaetEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKfedEKQQLIRDNDQA 896
Cdd:COG5185 459 -----EESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSK---LDQVAESLKDFM 530
|
330 340
....*....|....*....|...
gi 1958657580 897 IKALQDELETRSNQVRSAEKKLQ 919
Cdd:COG5185 531 RARGYAHILALENLIPASELIQA 553
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
440-776 |
6.94e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.66 E-value: 6.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 440 KDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSEL--QELKTRQNLLHTEKEHLVNDYEQNVKLLKT--KYDS 515
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMERERELERIRQeeRKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 516 DINILRQEHALSTSKtsvvIEELE--QNIRQLKQQVQESELQRKQQVKDQEdkfhmeKNHLKYIYEEKVHELKseLDKEK 593
Cdd:pfam17380 362 LERIRQEEIAMEISR----MRELErlQMERQQKNERVRQELEAARKVKILE------EERQRKIQQQKVEMEQ--IRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 594 EDAQrkihkfEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREkqsk 673
Cdd:pfam17380 430 EEAR------QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK---- 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 674 eflwQLEDARQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIA 753
Cdd:pfam17380 500 ----ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERS 566
|
330 340
....*....|....*....|...
gi 1958657580 754 DMEAqVHKLREELINVNSHRKQQ 776
Cdd:pfam17380 567 RLEA-MEREREMMRQIVESEKAR 588
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
608-828 |
7.34e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.74 E-value: 7.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 608 KEKEEQLGRVTEVQRLQAQQADAALEEFKRQVevtsEKVYSDMKEQMEKVEAdlsrskslREKQSKeflwqlEDARQRYE 687
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE--------EEDKLL------EEAEKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 688 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLRE--E 765
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657580 766 LINVNSHRKQQL--------VELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKA 828
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
544-926 |
8.46e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 46.29 E-value: 8.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 544 QLKQQVQESELQRKQQVKDQEDKFHMEKNHLKyiyEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQrl 623
Cdd:pfam09731 88 QVKIPRQSGVSSEVAEEEKEATKDAAEAKAQL---PKSEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAH-- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 624 qAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEflwQLEDARQRYEQQIVELK-----LEHE 698
Cdd:pfam09731 163 -TDSLKEASDTAEISREKATDSALQKAEALAEKLKEVINLAKQSEEEAAPP---LLDAAPETPPKLPEHLDnveekVEKA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 699 QEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQiqeSKKRDAQVIADMEAQVHKLREELINvnshrkqqlv 778
Cdd:pfam09731 239 QSLAKLVDQYKELVASERIVFQQELVSIFPDIIPVLKEDNLL---SNDDLNSLIAHAHREIDQLSKKLAE---------- 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 779 elglLREEEKQRAARdhetAVKKLKAESERVKMELKKthAAETEMTLEKANSRLKQIEKEytQKLAKSSQiiaelqttiS 858
Cdd:pfam09731 306 ----LKKREEKHIER----ALEKQKEELDKLAEELSA--RLEEVRAADEAQLRLEFERER--EEIRESYE---------E 364
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 859 SLKEESSRQQLAAERRLQDVIqkfEDEKQQLIRDNDQAIK-ALQDELETRSNQVRSAEKKLqhKELEAQ 926
Cdd:pfam09731 365 KLRTELERQAEAHEEHLKDVL---VEQEIELQREFLQDIKeKVEEERAGRLLKLNELLANL--KGLEKA 428
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
376-975 |
1.15e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 376 ILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKEnQITELKKICeqsteslnndwekKNHMIKDLEGRVQQLMGEAEN 455
Cdd:COG5022 684 ILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKY-QIGNTKVFF-------------KAGVLAALEDMRDAKLDNIAT 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 456 sNLQ---RQKLTQEKLELERCYQITCSELQE-LKTRQNLlhteKEHLvndYEQNVKLLKTKYDSDINILRQEHALSTskt 531
Cdd:COG5022 750 -RIQraiRGRYLRRRYLQALKRIKKIQVIQHgFRLRRLV----DYEL---KWRLFIKLQPLLSLLGSRKEYRSYLAC--- 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 532 svvIEELEQNIRQLKQQVQESElqrkqqvkdQEDKFHMEKNHLKYIYEEKVHELKSELDKEK--EDAQRKIHKFEEALKE 609
Cdd:COG5022 819 ---IIKLQKTIKREKKLRETEE---------VEFSLKAEVLIQKFGRSLKAKKRFSLLKKETiyLQSAQRVELAERQLQE 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 610 KEEQLGRVTEVqRLQAQQADAALEEFKRQVEvTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEflwqledarqrYEQQ 689
Cdd:COG5022 887 LKIDVKSISSL-KLVNLELESEIIELKKSLS-SDLIENLEFKTELIARLKKLLNNIDLEEGPSIE-----------YVKL 953
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 690 IVELKLeHEQEKThlLQQHNAEKDSLVRDHEreveNLENQLRAANMEHENQIQESKKRDAQVIAdMEAQVHKLREEliNV 769
Cdd:COG5022 954 PELNKL-HEVESK--LKETSEEYEDLLKKST----ILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKEL--PV 1023
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 770 NSHRKQQLVELGLLREEEKQRaardhETAVKKLKAESERVKMELKKTHAAeteMTLEKANSRLKQIEKEYTQK---LAKS 846
Cdd:COG5022 1024 EVAELQSASKIISSESTELSI-----LKPLQKLKGLLLLENNQLQARYKA---LKLRRENSLLDDKQLYQLEStenLLKT 1095
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 847 SQIIAELQTTISSLKEESSRQQLAAER---RLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKEL 923
Cdd:COG5022 1096 INVKDLEVTNRNLVKPANVLQFIVAQMiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA 1175
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1958657580 924 EAQEQMMYIRQEYETKFKGLmpASLRQELEDTISSLKSQVNFLQKRASILQE 975
Cdd:COG5022 1176 ALSEKRLYQSALYDEKSKLS--SSEVNDLKNELIALFSKIFSGWPRGDKLKK 1225
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
326-771 |
1.56e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 326 LSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQT-------ETEETVRKLEKKVQI 398
Cdd:TIGR04523 196 LLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTqlnqlkdEQNKIKKQLSEKQKE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 399 LIRDCQVIREtKENQITELKKICEQSTESLNNDWEKK-NHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQIT 477
Cdd:TIGR04523 276 LEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 478 CSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKtKYDSDINILRQEhalsTSKTSVVIEELEQNIRQLKQQVQ--ESELQ 555
Cdd:TIGR04523 355 ESENSEKQRELEEKQNEIEKLKKENQSYKQEIK-NLESQINDLESK----IQNQEKLNQQKDEQIKKLQQEKEllEKEIE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 556 R-KQQVKDQED--KFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGR-VTEVQRL--QAQQAD 629
Cdd:TIGR04523 430 RlKETIIKNNSeiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSkEKELKKLneEKKELE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 630 AALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHE------QEKTH 703
Cdd:TIGR04523 510 EKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKslkkkqEEKQE 589
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958657580 704 LLQQHNAEKDSLVRD---HEREVENLENQLRAANMEHE------NQIQESKKRDAQVIADMEAQVHKLREELINVNS 771
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEieeKEKKISSLEKELEKAKKENEklssiiKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIK 666
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
587-905 |
1.56e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 587 SELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEvtsekvysdmkEQMEKVEAdlsrsks 666
Cdd:pfam12128 628 VQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN-----------ERLNSLEA------- 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 667 lrekQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIqESKK 746
Cdd:pfam12128 690 ----QLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDL-ASLG 764
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 747 RDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARdHETAVKKLKAESERVKMELKKThAAETEMTLE 826
Cdd:pfam12128 765 VDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPR-LATQLSNIERAISELQQQLARL-IADTKLRRA 842
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 827 KANSRLKQIEKEyTQKLAKSSQIIAELQTTISSLKEESSRQQLAAErrlqdvIQKFEDEKQQLIRDNDQAIKALQDELE 905
Cdd:pfam12128 843 KLEMERKASEKQ-QVRLSENLRGLRCEMSKLATLKEDANSEQAQGS------IGERLAQLEDLKLKRDYLSESVKKYVE 914
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
346-841 |
1.65e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 346 SEEKLKLQKKHDAEVQKI--LERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIrETKENQITELKKICEQ 423
Cdd:PRK03918 271 LKKEIEELEEKVKELKELkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL-EEKEERLEELKKKLKE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 424 STESLN--NDWEKKNHMIKDLEGRVQQLmgEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVND 501
Cdd:PRK03918 350 LEKRLEelEERHELYEEAKAKKEELERL--KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 502 YEqnvKLLKTKY----------DSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQvkdqedkfhMEK 571
Cdd:PRK03918 428 IE---ELKKAKGkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKE---------SEL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 572 NHLKYIYEEkVHELKSELDK-EKEDAQRKIHKFEealKEKEEQLGRVTEVQRLQAQQADaaLEEFKRQVEVTSEKVySDM 650
Cdd:PRK03918 496 IKLKELAEQ-LKELEEKLKKyNLEELEKKAEEYE---KLKEKLIKLKGEIKSLKKELEK--LEELKKKLAELEKKL-DEL 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 651 KEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRY-EQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQ 729
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEYlELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 730 LRAANMEHEnqiQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREE-EKQRAARDHETAVKKLKAESER 808
Cdd:PRK03918 649 LEELEKKYS---EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEElEEREKAKKELEKLEKALERVEE 725
|
490 500 510
....*....|....*....|....*....|...
gi 1958657580 809 VKMELKKTHAAETEMTLEKANSRLKQIEKEYTQ 841
Cdd:PRK03918 726 LREKVKKYKALLKERALSKVGEIASEIFEELTE 758
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
534-983 |
1.95e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 534 VIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEK---NHLKYIYEEKVHELKSELDKEKEDAQRKIHKF---EEAL 607
Cdd:TIGR00618 223 VLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQllkQLRARIEELRAQEAVLEETQERINRARKAAPLaahIKAV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 608 KEKEEQLGRVTevQRLQAQQADAALEEFKRQVEVTSEkvySDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYE 687
Cdd:TIGR00618 303 TQIEQQAQRIH--TELQSKMRSRAKLLMKRAAHVKQQ---SSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 688 QQIVelkLEHEQEKTHLLQQHNAEKdSLVRDHEREVENLENQLRAANMEH------ENQIQESKKRDA--QVIADMEAQV 759
Cdd:TIGR00618 378 TQHI---HTLQQQKTTLTQKLQSLC-KELDILQREQATIDTRTSAFRDLQgqlahaKKQQELQQRYAElcAAAITCTAQC 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 760 HKLREELINVNSHRKQQLVELGLLREEEKQRAARDH--ETAVKKLKAESER-VKMELKKTHAAETEMTLEKAN-SRLKQI 835
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKavVLARLLELQEEPCpLCGSCIHPNPARQDIDNPGPLtRRMQRG 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 836 EKEYT---QKLAKSSQIIAELQTTISSLKEESSR---------QQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDE 903
Cdd:TIGR00618 534 EQTYAqleTSEEDVYHQLTSERKQRASLKEQMQEiqqsfsiltQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 904 LETrsnQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMPASLRQElEDTISSLKSQVNFLQKRASIlQEELTTYQSR 983
Cdd:TIGR00618 614 QHA---LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE-RVREHALSIRVLPKELLASR-QLALQKMQSE 688
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
535-758 |
2.12e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQESElqrkQQVKDQEDKfhMEKNhlkyiyEEKVHELKSELD---KEKEDAQRKIHKFEEALKEKE 611
Cdd:COG3883 18 IQAKQKELSELQAELEAAQ----AELDALQAE--LEEL------NEEYNELQAELEalqAEIDKLQAEIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 612 EQLGrvtevQRLQAQQADAA-------------LEEFKRQVEVTSeKVYSDMKEQMEKVEADLsrsKSLREKQSkeflwQ 678
Cdd:COG3883 86 EELG-----ERARALYRSGGsvsyldvllgsesFSDFLDRLSALS-KIADADADLLEELKADK---AELEAKKA-----E 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 679 LEDARQRYEQQIVELKLEHEQekthlLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQ 758
Cdd:COG3883 152 LEAKLAELEALKAELEAAKAE-----LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-928 |
2.86e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 681 DARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREVENLENQLRAANME---HENQIQESKKRDAQVIADM 755
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLkqLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 756 EAQVHKLREELINVNSHRKQQLVELgLLREEEKQRAARdhetAVKKLKAESERVKMELKkthaaetemTLEKANSRLKQI 835
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLAL-LLSPEDFLDAVR----RLQYLKYLAPARREQAE---------ELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 836 EKEYTQKLAKSSQIIAELQTtisslkeesSRQQLAAERrlqdviqkfeDEKQQLIRDNDQAIKALQDELETRSNQVRSAE 915
Cdd:COG4942 166 RAELEAERAELEALLAELEE---------ERAALEALK----------AERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|...
gi 1958657580 916 KKLQHKELEAQEQ 928
Cdd:COG4942 227 ALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
535-766 |
3.36e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQ-----ESELQRKQQVKDQEDKFHMEKNHLK-YIYEEKVHELKSELDKEKEDAQRKIHKFEEALK 608
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 609 EKEEQLGRVTEVQRLQAQQADAALEEFKRQVEvtsekvysDMKEQMEKVEADLSRskslREKQSKEFLWQLEDARQRYEQ 688
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIE--------RLERELEERERRRAR----LEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657580 689 QIVELKLEHEQEKTHLLQQHNAekdslVRDHEREVENLENQLRAAnmehENQIQESKKRDaqviADMEAQVHKLREEL 766
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEA-----LAEAEAALRDLRRELREL----EAEIASLERRK----SNIPARLLALRDAL 449
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
433-977 |
3.99e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 433 EKKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTK 512
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 513 YDSDINIL----------RQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQE-DKFHMEKNHLKYIYEEK 581
Cdd:pfam02463 253 IESSKQEIekeeeklaqvLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEkLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 582 VHELKSELDKEKEDAQRKIHKFEEALKEKEEQlgrvtevQRLQAQQADAALEEFKRQVEVTSEKVySDMKEQMEKVEADL 661
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKL-------QEKLEQLEEELLAKKKLESERLSSAA-KLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 662 SRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQI 741
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 742 QESKKRDAQVIADMEAQVHKLREELiNVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLK-----AESERVKMELKKT 816
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARSGL-KVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIstaviVEVSATADEVEER 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 817 HAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEEssRQQLAAERRLQDVIQKFEDEKQQLIRDNDQA 896
Cdd:pfam02463 564 QKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK--ATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 897 IKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEE 976
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
.
gi 1958657580 977 L 977
Cdd:pfam02463 722 L 722
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
825-983 |
4.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 825 LEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLK-EESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQD- 902
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 903 ---ELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETkfkglMPASLRQELEDTISSLKSQVNFLQKRASILQEELTT 979
Cdd:COG3206 264 viqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-----LRAQLQQEAQRILASLEAELEALQAREASLQAQLAQ 338
|
....
gi 1958657580 980 YQSR 983
Cdd:COG3206 339 LEAR 342
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
326-891 |
4.39e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 326 LSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQIlIRDCQV 405
Cdd:PRK03918 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK-VKELKE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 406 IRETKENQItELKKICEQSTESLNNDWEKKNHMIKDLEGrVQQLMGEAENSNLQRQKLTQEKLELERcyqitcsELQELK 485
Cdd:PRK03918 288 LKEKAEEYI-KLSEFYEEYLDELREIEKRLSRLEEEING-IEERIKELEEKEERLEELKKKLKELEK-------RLEELE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 486 TRQNLLHTEKEhLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQ----RKQQVK 561
Cdd:PRK03918 359 ERHELYEEAKA-KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAieelKKAKGK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 562 DQEDKFHMEKNHLKYIYEEKVHELKsELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRL-----QAQQADAALEEFK 636
Cdd:PRK03918 438 CPVCGRELTEEHRKELLEEYTAELK-RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeQLKELEEKLKKYN 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 637 RQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKqskefLWQLEDARQRYEQQIVELklehEQEKTHLLQQHNAEKDSLV 716
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK-----LEELKKKLAELEKKLDEL----EEELAELLKELEELGFESV 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 717 RDHEREVENLE----NQLRAANMEHENQIQESKkrdaqvIADMEAQVHKLREELINVNS---HRKQQLVELGLLREEEKQ 789
Cdd:PRK03918 588 EELEERLKELEpfynEYLELKDAEKELEREEKE------LKKLEEELDKAFEELAETEKrleELRKELEELEKKYSEEEY 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 790 RAARDHETavkKLKAESERVKMELK--KTHAAETEMTLEKANSRLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEESS 865
Cdd:PRK03918 662 EELREEYL---ELSRELAGLRAELEelEKRREEIKKTLEKLKEELEEREKakKELEKLEKALERVEELREKVKKYKALLK 738
|
570 580
....*....|....*....|....*..
gi 1958657580 866 RQQLA-AERRLQDVIQKFEDEKQQLIR 891
Cdd:PRK03918 739 ERALSkVGEIASEIFEELTEGKYSGVR 765
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
535-919 |
4.89e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQESElQRKQQVKDQEDKFH-MEKNHLkyiyEEKVHELKSELDkEKEDAQRKIHKFEEALKEKEEQ 613
Cdd:PRK04863 853 LADHESQEQQQRSQLEQAK-EGLSALNRLLPRLNlLADETL----ADRVEEIREQLD-EAEEAKRFVQQHGNALAQLEPI 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 614 LGRVTEVQ------RLQAQQADAALEEFKRQVEVTSEKV-------YSD--------------MKEQMEKVEADLSRSK- 665
Cdd:PRK04863 927 VSVLQSDPeqfeqlKQDYQQAQQTQRDAKQQAFALTEVVqrrahfsYEDaaemlaknsdlnekLRQRLEQAEQERTRARe 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 666 SLREKQSK-----EFLWQLEDARQRYEQQIVELKLEheqekthlLQQHNAEKDslvrdherevENLENQLRAANMEHENQ 740
Cdd:PRK04863 1007 QLRQAQAQlaqynQVLASLKSSYDAKRQMLQELKQE--------LQDLGVPAD----------SGAEERARARRDELHAR 1068
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 741 IQESKKRDAQViadmEAQVHKLREELINVNSHRKQQLVELGLLREEEKQ---------RAARDHETAvKKLKAEservkm 811
Cdd:PRK04863 1069 LSANRSRRNQL----EKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNakagwcavlRLVKDNGVE-RRLHRR------ 1137
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 812 ELKKTHAAETEMTLEKANSRLKqiekeytqkLAKSSqiiAELQTTISSLKEESSRqqlaAERRLQ---DVIQKFEDE-KQ 887
Cdd:PRK04863 1138 ELAYLSADELRSMSDKALGALR---------LAVAD---NEHLRDVLRLSEDPKR----PERKVQfyiAVYQHLRERiRQ 1201
|
410 420 430
....*....|....*....|....*....|....
gi 1958657580 888 QLIRDND--QAIKALQDELETRSNQVRSAEKKLQ 919
Cdd:PRK04863 1202 DIIRTDDpvEAIEQMEIELSRLTEELTSREQKLA 1235
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
536-919 |
5.11e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 536 EELEQNIRQLKQQVQESELQRKQQVKDQEDkfHMEKNhlkyiyeEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLg 615
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADD--LEERA-------EELREEAAELESELEEAREAVEDRREEIEELEEEI- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 616 rvtEVQRLQAQQADAALEEFK-RQVEVTSEKvySDMKEQMEKVEADLsrsKSLREKqskeflwqLEDARQRYEQ------ 688
Cdd:PRK02224 394 ---EELRERFGDAPVDLGNAEdFLEELREER--DELREREAELEATL---RTARER--------VEEAEALLEAgkcpec 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 689 -QIVElkleheqEKTHLlqQHNAEKDSLVRDHEREVENLENQLRAANMEHENqiqeskkrdAQVIADMEAQVHKLREELI 767
Cdd:PRK02224 458 gQPVE-------GSPHV--ETIEEDRERVEELEAELEDLEEEVEEVEERLER---------AEDLVEAEDRIERLEERRE 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 768 NVNSHRKQQ--LVELGLLREEEKQRAARDHETavkklKAESERVKMELKKTHAAETEMTLEKANSRLKQI--EKEYTQKL 843
Cdd:PRK02224 520 DLEELIAERreTIEEKRERAEELRERAAELEA-----EAEEKREAAAEAEEEAEEAREEVAELNSKLAELkeRIESLERI 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 844 AKSSQIIAELQTTISSLKE---------ESSRQQLAAER-RLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRS 913
Cdd:PRK02224 595 RTLLAAIADAEDEIERLREkrealaelnDERRERLAEKReRKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE 674
|
....*.
gi 1958657580 914 AEKKLQ 919
Cdd:PRK02224 675 ERDDLQ 680
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
459-743 |
5.18e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 459 QRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHL-----VNDYEQNVKLLKTKYDSdiniLRQEHAlSTSKTSV 533
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrlaeYSWDEIDVASAEREIAE----LEAELE-RLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 534 VIEELEQNIRQLKQQVQESELQRKQQVKDQedkfhmeknhlkyiyeekvhelkSELDKEKEDAQRKIHKFEEALkEKEEQ 613
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEI-----------------------GRLEKELEQAEEELDELQDRL-EAAED 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 614 LGRVTEVQRLQAQQADAALEEFKRQVevtsekvysdmkeqMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVEL 693
Cdd:COG4913 742 LARLELRALLEERFAAALGDAVEREL--------------RENLEERIDALRARLNRAEEELERAMRAFNREWPAETADL 807
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657580 694 -----------KLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQE 743
Cdd:COG4913 808 dadleslpeylALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
331-731 |
5.41e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 331 EKELDMKTKMMEAKFSEekLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEeTVRKLEKKVQILIRDCQVIRETK 410
Cdd:TIGR00606 722 EKRRDEMLGLAPGRQSI--IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG-TIMPEEESAKVCLTDVTIMERFQ 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 411 ENQITELKKICEQSTESLNNDwekknhmikdLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNL 490
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSD----------LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 491 LHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVieELEQNIRQLKQQVQESELQRKQQVKDQEDKFHME 570
Cdd:TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDS--PLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 571 KNHLKYIY------EEKVHELKSELDKEKEDA-----------------------------------------QRKIHKF 603
Cdd:TIGR00606 947 KEKVKNIHgymkdiENKIQDGKDDYLKQKETElntvnaqleecekhqekinedmrlmrqdidtqkiqerwlqdNLTLRKR 1026
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 604 EEALKEKEEQ----LGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVeadLSRSKSLREKqskeflwQL 679
Cdd:TIGR00606 1027 ENELKEVEEElkqhLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI---KHFKKELREP-------QF 1096
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1958657580 680 EDARQRYEQQIVELKLEHEQEKThLLQQHNAEKDSLVRDHEREVENLENQLR 731
Cdd:TIGR00606 1097 RDAEEKYREMMIVMRTTELVNKD-LDIYYKTLDQAIMKFHSMKMEEINKIIR 1147
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
520-732 |
6.04e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 520 LRQEHALSTSKTSVVIEELEQNIRQLKQQVQESElQRKQQVKDQEDKFHMEKNHLkyIYEEKVHELKSELDK---EKEDA 596
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNGLVDLSEEAK--LLLQQLSELESQLAEaraELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 597 QRKIHKFEEALKEKEEQLGRVTEVQRLqaQQADAALEEFKRQVEVTSEKvYSDMKEQMEKVEADLSRSKSLREKQSKEFL 676
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVI--QQLRAQLAELEAELAELSAR-YTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958657580 677 WQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREVENLENQLRA 732
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPELEAE--LRRLEREVEVARELYES 369
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
749-977 |
6.25e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 749 AQVIADMEAQVHKLREELINVNSHRKQQLVElgllrEEEKQRAARDHETAVKKLKAESERVKMELkkthaAETEMTLEKA 828
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKE-----EKALLKQLAALERRIAALARRIRALEQEL-----AALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 829 NSRLKQIEKEYTQKLAKSSQIIAELQTT--ISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIrdndQAIKALQDELET 906
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA----EELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657580 907 RSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKfkglmpASLRQELEDTISSLKSQVNFLQKRASILQEEL 977
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAER------QKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
426-924 |
7.45e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 426 ESLNNDWEKKNHMIKDLEGRVQQ---LMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDY 502
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRAEISNidyLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 503 EQNVKLLKTKydsdiNILRQEHALSTSKTSVVIEELEQnIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYiYEEKV 582
Cdd:PRK01156 242 NELSSLEDMK-----NRYESEIKTAESDLSMELEKNNY-YKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQIL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 583 HELKSELDKeKEDAQRKIHKFEEALKEKEEQLGRVTEV--QRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQmEKVEAD 660
Cdd:PRK01156 315 SNIDAEINK-YHAIIKKLSVLQKDYNDYIKKKSRYDDLnnQILELEGYEMDYNSYLKSIESLKKKIEEYSKNI-ERMSAF 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 661 LSRSKSLREKQSKEFLWQLEDAR---QRYEQQIVELkleheqekthllqqhNAEKDSLvRDHEREVENLENQLRAANM-- 735
Cdd:PRK01156 393 ISEILKIQEIDPDAIKKELNEINvklQDISSKVSSL---------------NQRIRAL-RENLDELSRNMEMLNGQSVcp 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 736 --------EHENQIQESKKRDAQVIadmEAQVHKLREELINVNSHRKQQLVELGLLREEEkqraARDHETAVKKLK-AES 806
Cdd:PRK01156 457 vcgttlgeEKSNHIINHYNEKKSRL---EEKIREIEIEVKDIDEKIVDLKKRKEYLESEE----INKSINEYNKIEsARA 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 807 ERVKMELKKTHAAETEMTLEKANSRLKQI-----EKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQK 881
Cdd:PRK01156 530 DLEDIKIKINELKDKHDKYEEIKNRYKSLkledlDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIG 609
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1958657580 882 FEDEKQQlirdNDQAIKALQDELETRSNQVRSA-EKKLQHKELE 924
Cdd:PRK01156 610 FPDDKSY----IDKSIREIENEANNLNNKYNEIqENKILIEKLR 649
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
720-929 |
8.87e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 720 EREVENLENQLRAANMEHE-NQIQESKKRDAQVIADMEAQVHKLREELINVNShRKQQLVELGLLREEEKQRAARDheTA 798
Cdd:COG3206 188 RKELEEAEAALEEFRQKNGlVDLSEEAKLLLQQLSELESQLAEARAELAEAEA-RLAALRAQLGSGPDALPELLQS--PV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 799 VKKLKAESERVKMELkkthaAETEMTLEKANSRLKQIEKEYtqklaksSQIIAELQTTISSLKEESSRQQLAAERRLQDV 878
Cdd:COG3206 265 IQQLRAQLAELEAEL-----AELSARYTPNHPDVIALRAQI-------AALRAQLQQEAQRILASLEAELEALQAREASL 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958657580 879 IQKFEDEKQQLIRDNDQAIK--ALQDELETRSNQVRSAEKKLQhkELEAQEQM 929
Cdd:COG3206 333 QAQLAQLEARLAELPELEAElrRLEREVEVARELYESLLQRLE--EARLAEAL 383
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
739-978 |
9.34e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.02 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 739 NQIQESKKRDAQVIADMEAQVHKLREELinvnSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESE----RVKMELK 814
Cdd:COG5185 271 GENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETEtgiqNLTAEIE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 815 KTHAAETEmTLEKANSRLKQIEKEYtqKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDND 894
Cdd:COG5185 347 QGQESLTE-NLEAIKEEIENIVGEV--ELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 895 Q---AIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMyIRQEYETKFKGLMPASLRQELEDTISSLKSQVNFLQKRAS 971
Cdd:COG5185 424 ElqrQIEQATSSNEEVSKLLNELISELNKVMREADEESQ-SRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLE 502
|
....*..
gi 1958657580 972 ILQEELT 978
Cdd:COG5185 503 KLRAKLE 509
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
479-911 |
1.11e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 479 SELQELKTRQNLLHTEKEHLVNDY----EQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEEL-EQNIRQLKQQVQESE 553
Cdd:TIGR01612 565 KELEEENEDSIHLEKEIKDLFDKYleidDEIIYINKLKLELKEKIKNISDKNEYIKKAIDLKKIiENNNAYIDELAKISP 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 554 LQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSEL-------------DKEK-EDAQRKIHKFEEALK----------- 608
Cdd:TIGR01612 645 YQVPEHLKNKDKIYSTIKSELSKIYEDDIDALYNELssivkenaidnteDKAKlDDLKSKIDKEYDKIQnmetatvelhl 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 609 -----EKEEQLGRVTEVQRL----QAQQADAALEEFKRQVEVTSEKV--YSDMKEQMEKVEADLSRSKSLREKQSKEFLW 677
Cdd:TIGR01612 725 snienKKNELLDIIVEIKKHihgeINKDLNKILEDFKNKEKELSNKIndYAKEKDELNKYKSKISEIKNHYNDQINIDNI 804
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 678 QLEDARQRYEQQIVELKL--EHEQEKTHLLQQHNAEKDSLVRDHEREVeNLENQLRA-ANMEHENQIQESKKRDAQV--- 751
Cdd:TIGR01612 805 KDEDAKQNYDKSKEYIKTisIKEDEIFKIINEMKFMKDDFLNKVDKFI-NFENNCKEkIDSEHEQFAELTNKIKAEIsdd 883
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 752 -IADMEAQVHKLREELINVNSHRKQQLVELGLLRE-EEKQRAARDHETAVKKLKAESERVKMELKKTHAaetemTLEKAN 829
Cdd:TIGR01612 884 kLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKvDEYIKICENTKESIEKFHNKQNILKEILNKNID-----TIKESN 958
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 830 SrlkqIEKEYTQKLAKS-SQIIAELQTTISSLKEESSrqqlaaERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRS 908
Cdd:TIGR01612 959 L----IEKSYKDKFDNTlIDKINELDKAFKDASLNDY------EAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEKAT 1028
|
...
gi 1958657580 909 NQV 911
Cdd:TIGR01612 1029 NDI 1031
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
595-768 |
1.35e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 595 DAQRKIHKFEEALKEKEEQLGRVTE-VQRLQAQQA--DAALEEFKRQVEVTSEKV--------YSDMKEQMEKVEADLSR 663
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEErLEALEAELDalQERREALQRLAEYSWDEIdvasaereIAELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 664 SKSLREKQSkeflwQLEDARQRYEQQIVELKLE---HEQEKTHLLQQHNAEKDSLVRDHEREV----ENLENQLRAANME 736
Cdd:COG4913 687 LAALEEQLE-----ELEAELEELEEELDELKGEigrLEKELEQAEEELDELQDRLEAAEDLARlelrALLEERFAAALGD 761
|
170 180 190
....*....|....*....|....*....|...
gi 1958657580 737 -HENQIQESKKRDaqvIADMEAQVHKLREELIN 768
Cdd:COG4913 762 aVERELRENLEER---IDALRARLNRAEEELER 791
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
536-874 |
1.64e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 536 EELEQNIRQLKQQVQESE--LQRKQQVKDQEDKFHMEKNHLKYIYE--EKVHELKSELDKEKEDAQRKIHKFEEALKEKE 611
Cdd:COG3096 316 EELSARESDLEQDYQAASdhLNLVQTALRQQEKIERYQEDLEELTErlEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLK 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 612 EQLG---RVTEVQR---LQAQQADAALEEFKRQV---EVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEflwqlEDA 682
Cdd:COG3096 396 SQLAdyqQALDVQQtraIQYQQAVQALEKARALCglpDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVA-----DAA 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 683 RQRYEQ--QIVELKLEH-----------EQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAAnmehENQIQESKKRDA 749
Cdd:COG3096 471 RRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIG 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 750 QVIADMEaQVHKLREELinvnshrKQQLVELGLLREEEKQRAARdhetavkkLKAESERVKMELKKThaAETEMTLEKAN 829
Cdd:COG3096 547 QQLDAAE-ELEELLAEL-------EAQLEELEEQAAEAVEQRSE--------LRQQLEQLRARIKEL--AARAPAWLAAQ 608
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1958657580 830 SRLKQIEKEYTQKLAKSSQIIAELQTTISSLKE-ESSRQQLAAERR 874
Cdd:COG3096 609 DALERLREQSGEALADSQEVTAAMQQLLEREREaTVERDELAARKQ 654
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
497-869 |
1.76e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 497 HLVNDYEQNVKLLKTKYDSDINiLRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQ-EDKFHMEKNHLK 575
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVME-LPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQlEDLVGMIQNAEK 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 576 YIY---EEKVHELKsELDK---EKEDAQRKIHKFEEALKEKEEQLGRVTEVQrLQAQQADAALEEFKRqvEVTSEKVYSD 649
Cdd:PLN02939 143 NILllnQARLQALE-DLEKiltEKEALQGKINILEMRLSETDARIKLAAQEK-IHVEILEEQLEKLRN--ELLIRGATEG 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 650 MKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEH--------EQEKTHLLQQHNAEK-DSLVRDHE 720
Cdd:PLN02939 219 LCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERslldaslrELESKFIVAQEDVSKlSPLQYDCW 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 721 RE-VENLENQLRAANMEHENQIQESKKRDaqviaDMEAQVHKLREELinvnshrkqqlvelgllreeekqraardHETAV 799
Cdd:PLN02939 299 WEkVENLQDLLDRATNQVEKAALVLDQNQ-----DLRDKVDKLEASL----------------------------KEANV 345
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 800 KKLkaESERVKMELKKTHAAEtemtlekanSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQL 869
Cdd:PLN02939 346 SKF--SSYKVELLQQKLKLLE---------ERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSL 404
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
327-929 |
1.84e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 327 SRMHEKEL-DMKTKMMEAKFS-EEKLKLQKKHDAEVQK---ILERKNNEL-EELKILYKKKQtETEETVRKLEKKVQILI 400
Cdd:pfam01576 340 TRSHEAQLqEMRQKHTQALEElTEQLEQAKRNKANLEKakqALESENAELqAELRTLQQAKQ-DSEHKRKKLEGQLQELQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 401 RDCQVIRETKENQITELKKiceqstesLNNDWEKKNHMIKDLEGRVQQLMGEAENSNLQRQKlTQEKLELE-RCYQITCS 479
Cdd:pfam01576 419 ARLSESERQRAELAEKLSK--------LQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQD-TQELLQEEtRQKLNLST 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 480 ELQELKTRQNLLHTEKEHlvndyEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVqESELQRKQQ 559
Cdd:pfam01576 490 RLRQLEDERNSLQEQLEE-----EEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQREL-EALTQQLEE 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 560 VKDQEDKFHMEKNHLkyiyEEKVHELKSELDKEKE---DAQRKIHKFEEALKE-------------KEEQLGRVTEVQRL 623
Cdd:pfam01576 564 KAAAYDKLEKTKNRL----QQELDDLLVDLDHQRQlvsNLEKKQKKFDQMLAEekaisaryaeerdRAEAEAREKETRAL 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 624 QAQQADAALEEFKRQVEVTSEKVYSDM------KEQMEKVEADLSRSKSLREKQSKEFLWQL----------EDARQRYE 687
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRAEMedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLeeledelqatEDAKLRLE 719
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 688 QQIVELKLEHEQEKTHLLQQHNAEKDSL---VRDHEREVEN---------------------LENQLRAANMEHENQIQE 743
Cdd:pfam01576 720 VNMQALKAQFERDLQARDEQGEEKRRQLvkqVRELEAELEDerkqraqavaakkkleldlkeLEAQIDAANKGREEAVKQ 799
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 744 SKKRDAQV---IADMEaQVHKLREELINVN--SHRKQQLVELGLLREEEKQRAArdhETAVKKLKAESERVKMELKKTHA 818
Cdd:pfam01576 800 LKKLQAQMkdlQRELE-EARASRDEILAQSkeSEKKLKNLEAELLQLQEDLAAS---ERARRQAQQERDELADEIASGAS 875
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 819 AETEMTLEK--ANSRLKQIEKEyTQKLAKSSQIIAELQTTiSSLKEESSRQQLAAERRLQdviQKFEDEKQQLIRDNDQA 896
Cdd:pfam01576 876 GKSALQDEKrrLEARIAQLEEE-LEEEQSNTELLNDRLRK-STLQVEQLTTELAAERSTS---QKSESARQQLERQNKEL 950
|
650 660 670
....*....|....*....|....*....|...
gi 1958657580 897 IKALQDELETRSNQVRSAEKKLQHKELEAQEQM 929
Cdd:pfam01576 951 KAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQL 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
500-941 |
1.93e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 500 NDYEQNVKLLKTKYDSDINILRQEhalsTSKTSVVIEELEQNIRQLKQQVQES----ELQRKQQVKDQEDKFHMEKNHLK 575
Cdd:PTZ00121 1079 FDFDAKEDNRADEATEEAFGKAEE----AKKTETGKAEEARKAEEAKKKAEDArkaeEARKAEDARKAEEARKAEDAKRV 1154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 576 YIYEEKVHELKSELDKEKEDAQRkihkFEEAlkEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQME 655
Cdd:PTZ00121 1155 EIARKAEDARKAEEARKAEDAKK----AEAA--RKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 656 KVEADLSRSKSLREKQSKEflwqledarqryEQQIVELKLEHEQEKTHLLQQHNAEKDSLVR--DHEREVENLENQLRAA 733
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEE------------ERNNEEIRKFEEARMAHFARRQAAIKAEEARkaDELKKAEEKKKADEAK 1296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 734 NMEHENQIQESKKRdaqviadmeAQVHKLREELINVNSHRKQQLVELGLLREEEKQR---AARDHETAVKKLKAESERVK 810
Cdd:PTZ00121 1297 KAEEKKKADEAKKK---------AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaeaAKAEAEAAADEAEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 811 MELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQ--- 887
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKkad 1447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958657580 888 QLIRDNDQAIKALQ-----------DELETRSNQVRSAEkKLQHKELEAQEQMMYIRQEYETKFK 941
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEakkkaeeakkaDEAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKK 1511
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
343-508 |
2.25e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 343 AKFSEEKLKLQKKHDAEvqKILERKNNELEELKilyKKKQTETEETVRKLEKKVQilirdcQVIREtKENQITELKKICE 422
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAK--RILEEAKKEAEAIK---KEALLEAKEEIHKLRNEFE------KELRE-RRNELQKLEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 423 QSTESLNNDWE---KKNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKL-ELERCYQITCSE-----LQELKTRqnlLHT 493
Cdd:PRK12704 93 QKEENLDRKLElleKREEELEKKEKELEQKQQELEKKEEELEELIEEQLqELERISGLTAEEakeilLEKVEEE---ARH 169
|
170
....*....|....*
gi 1958657580 494 EKEHLVNDYEQNVKL 508
Cdd:PRK12704 170 EAAVLIKEIEEEAKE 184
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
786-984 |
3.80e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 786 EEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEM-TLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEES 864
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 865 SRQQLAAERRLQdVIQKFE-----------DEKQQLIRdNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQmmyiR 933
Cdd:COG4942 100 EAQKEELAELLR-ALYRLGrqpplalllspEDFLDAVR-RLQYLKYLAPARREQAEELRADLAELAALRAELEAE----R 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958657580 934 QEYETKFKGLmpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR 984
Cdd:COG4942 174 AELEALLAEL--EEERAALEALKAERQKLLARLEKELAELAAELAELQQEA 222
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
535-980 |
4.14e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQESELQRKQQVKDQEdKFHMEKNHLKYIYEEKVHELKSeLDKEKEDAQRKIHKFEEALKEKEEQL 614
Cdd:TIGR04523 77 IKILEQQIKDLNDKLKKNKDKINKLNSDLS-KINSEIKNDKEQKNKLEVELNK-LEKQKKENKKNIDKFLTEIKKKEKEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 615 grvtevqrlqaqqadaaleefkrqveVTSEKVYSDMKEQMEKVEADLSrskslrekqskeflwQLEDARQRYEQQIVELK 694
Cdd:TIGR04523 155 --------------------------EKLNNKYNDLKKQKEELENELN---------------LLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 695 LEHEQEKTHL--LQQHNAEKDSLvrdhEREVENLENQlraanmehENQIQESKKRDAQVIADMEAQVHKLREELINVNSH 772
Cdd:TIGR04523 194 NKLLKLELLLsnLKKKIQKNKSL----ESQISELKKQ--------NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 773 RKQQLVELgllreEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQ---KLAKSSQI 849
Cdd:TIGR04523 262 QNKIKKQL-----SEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEiqnQISQNNKI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 850 IAELQTTISSLKEESSRQQLAAErRLQDVIQKFEDEKQQLIRDNDQAIKALQDeLETRSNQVRSAEKKLQHKELEAQEQM 929
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENS-EKQRELEEKQNEIEKLKKENQSYKQEIKN-LESQINDLESKIQNQEKLNQQKDEQI 414
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657580 930 MYIRQEYETKFK--------GLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTY 980
Cdd:TIGR04523 415 KKLQQEKELLEKeierlketIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL 473
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
535-842 |
4.34e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLkyiyEEKVHELKSELDkEKEDAQRKIHKFEEALKEKEEQL 614
Cdd:COG3096 852 LAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADETL----ADRLEELREELD-AAQEAQAFIQQHGKALAQLEPLV 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 615 GRV----TEVQRLQA--QQADAALEEFKRQVEVTSEKV-------YSDMKEQMEKvEADLSrsKSLREKqskefLWQLED 681
Cdd:COG3096 927 AVLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVqrrphfsYEDAVGLLGE-NSDLN--EKLRAR-----LEQAEE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 682 ARQRYEQQivelkLEHEQEKthlLQQHNAEKDSLVRDHerevenlenqlRAANMEHENQIQESKKRDAQVIADMEAQVHK 761
Cdd:COG3096 999 ARREAREQ-----LRQAQAQ---YSQYNQVLASLKSSR-----------DAKQQTLQELEQELEELGVQADAEAEERARI 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 762 LREELINVNSHRKQQLVELgllreeEKQRAARdhetavkklkaeservkmelkkthaaETEMtlEKANSRLKQIEKEYTQ 841
Cdd:COG3096 1060 RRDELHEELSQNRSRRSQL------EKQLTRC--------------------------EAEM--DSLQKRLRKAERDYKQ 1105
|
.
gi 1958657580 842 K 842
Cdd:COG3096 1106 E 1106
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
351-978 |
4.42e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 351 KLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILirdcQVIRETKENQITELKKICEQSTESLNN 430
Cdd:TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK----KEILEKKQEELKFVIKELQQLEGSSDR 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 431 DWEKKNHMIKdlegrvqqlmGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLK 510
Cdd:TIGR00606 473 ILELDQELRK----------AERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 511 TKYDSDINILRQEHALSTSKTSVV-----IEELEQNIRQLKQQVQESElQRKQQVKDQEDKFHMEKNHLKYIYEEKVHEL 585
Cdd:TIGR00606 543 DKMDKDEQIRKIKSRHSDELTSLLgyfpnKKQLEDWLHSKSKEINQTR-DRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 586 KSELDK-----EKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKR---------QVEVTSEKVYSDMK 651
Cdd:TIGR00606 622 SSYEDKlfdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpvcqrvfQTEAELQEFISDLQ 701
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 652 EQMEKVEADLSRSKSLREKQSKEFLWQLEDAR-QRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQL 730
Cdd:TIGR00606 702 SKLRLAPDKLKSTESELKKKEKRRDEMLGLAPgRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 731 RAANM---------EHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKK 801
Cdd:TIGR00606 782 ESAKVcltdvtimeRFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH 861
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 802 LKAESERVKMElkkthaaetEMTLEKANSRLKQIEKEYTQKlaksSQIIAELQTTISSLKEESSRqqlaaerrLQDVIQK 881
Cdd:TIGR00606 862 LKSKTNELKSE---------KLQIGTNLQRRQQFEEQLVEL----STEVQSLIREIKDAKEQDSP--------LETFLEK 920
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 882 FEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMpASL------RQELEDT 955
Cdd:TIGR00606 921 DQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVN-AQLeecekhQEKINED 999
|
650 660
....*....|....*....|...
gi 1958657580 956 ISSLKSQVNFLQKRASILQEELT 978
Cdd:TIGR00606 1000 MRLMRQDIDTQKIQERWLQDNLT 1022
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
678-852 |
4.53e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 678 QLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRaanmEHENQIQ---ESKKRDAQVIAD 754
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ----KLEKRLLqkeENLDRKLELLEK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 755 MEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARdhetaVKKLKAEsERVKMELKKThaaETEMTLEKAnSRLKQ 834
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER-----ISGLTAE-EAKEILLEKV---EEEARHEAA-VLIKE 177
|
170 180
....*....|....*....|.
gi 1958657580 835 IEKEYTQ---KLAKssQIIAE 852
Cdd:PRK12704 178 IEEEAKEeadKKAK--EILAQ 196
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
535-983 |
4.65e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 535 IEELEQNIRQLKQQVQESElQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQL 614
Cdd:COG4913 297 LEELRAELARLEAELERLE-ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 615 GRVTEVQRLQAQQADAALEEFKRQVEVTSEKVY------SDMKEQMEKVEADLsrsKSLREKQS---KEflwqLEDARQR 685
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEALAeaeaalRDLRRELRELEAEI---ASLERRKSnipAR----LLALRDA 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 686 YEQQI-------------VELKLEHEQ-----EKthLLqqHNAEKDSLVRD-HEREV------ENLENQLRAANMEHENQ 740
Cdd:COG4913 449 LAEALgldeaelpfvgelIEVRPEEERwrgaiER--VL--GGFALTLLVPPeHYAAAlrwvnrLHLRGRLVYERVRTGLP 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 741 IQESKKRDAQVIAD-MEAQVHK----LREELINVNSHRK----QQLVEL-------GLLREEEKQRAARDH--------- 795
Cdd:COG4913 525 DPERPRLDPDSLAGkLDFKPHPfrawLEAELGRRFDYVCvdspEELRRHpraitraGQVKGNGTRHEKDDRrrirsryvl 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 796 -ETAVKKLKAESERVKmELKKTHAAetemtLEKANSRLKQIEKEYTQKLAKSSQI---------IAELQTTISSLKEEss 865
Cdd:COG4913 605 gFDNRAKLAALEAELA-ELEEELAE-----AEERLEALEAELDALQERREALQRLaeyswdeidVASAEREIAELEAE-- 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 866 RQQL--------AAERRLQDVIQKFEDEKQQlIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMmyiRQEYE 937
Cdd:COG4913 677 LERLdassddlaALEEQLEELEAELEELEEE-LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL---RALLE 752
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1958657580 938 TKFKGLM----PASLRQELEDTISSLKSQVNFLQKRasiLQEELTTYQSR 983
Cdd:COG4913 753 ERFAAALgdavERELRENLEERIDALRARLNRAEEE---LERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
818-984 |
5.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 818 AAETEMTLEKANSRLKQIEKEytqkLAKSSQIIAELQTTISSLKEE--SSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQ 895
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQlaALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 896 AIKALQDELETR----SNQVRSAEKKLQHKELE---AQEQM--MYIRQEYetkFKGLMPASLRQ--ELEDTISSLKSQVN 964
Cdd:COG4942 91 EIAELRAELEAQkeelAELLRALYRLGRQPPLAlllSPEDFldAVRRLQY---LKYLAPARREQaeELRADLAELAALRA 167
|
170 180
....*....|....*....|
gi 1958657580 965 FLQKRASILQEELTTYQSRR 984
Cdd:COG4942 168 ELEAERAELEALLAELEEER 187
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
678-907 |
6.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 678 QLEDARQRYEQQIVELKLEHEQEKT------HLLQQHNAEKDslVRDHEREVENLENQLRAANmehenqiqeskkRDAQV 751
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQErrealqRLAEYSWDEID--VASAEREIAELEAELERLD------------ASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 752 IADMEAQVHKLREELinvnshrkQQLVElgllREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSR 831
Cdd:COG4913 687 LAALEEQLEELEAEL--------EELEE----ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657580 832 LKQIEKEytqklAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIK--ALQDELETR 907
Cdd:COG4913 755 FAAALGD-----AVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEylALLDRLEED 827
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
754-984 |
7.35e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 754 DMEAQVHKLREELINVNSHRKQqlvelglLREEEKQRAA----RDHETAVKKLKAESERVKMELKKTHAAETEMTLEKAN 829
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEA-------LEDAREQIELlepiRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 830 SRLKQIEKEYTQKLAKssqiIAELQTTISSLKEEssRQQLAAERRLQDViqkfeDEKQQLIRDndqaIKALQDELETRSN 909
Cdd:COG4913 295 AELEELRAELARLEAE----LERLEARLDALREE--LDELEAQIRGNGG-----DRLEQLERE----IERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 910 QVRSAEKKLQHKEL----------EAQEQMMYIRQEYEtkfkglmpaSLRQELEDTISSLKSQVNFLQKRASILQEELTT 979
Cdd:COG4913 360 RRARLEALLAALGLplpasaeefaALRAEAAALLEALE---------EELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
....*
gi 1958657580 980 YQSRR 984
Cdd:COG4913 431 LERRK 435
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
439-784 |
7.90e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 439 IKDLEGRVQQlmgeaensnlQRQKLTQEKLElercyqitCSELQELKTRQNLLhtEKEHLVNDYEQNVKLLKTKYDSDIN 518
Cdd:PRK04863 853 LADHESQEQQ----------QRSQLEQAKEG--------LSALNRLLPRLNLL--ADETLADRVEEIREQLDEAEEAKRF 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 519 ILRQEHALSTSKTSV-VIEELEQNIRQLKQQVQESE--LQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDkeked 595
Cdd:PRK04863 913 VQQHGNALAQLEPIVsVLQSDPEQFEQLKQDYQQAQqtQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLN----- 987
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 596 aqrkihkfeEALKEKEEQLGRVTEVQRLQAQQADAALEEFKrqvevtsekvysdmkeqmeKVEADLSRSKSLREKQSKEF 675
Cdd:PRK04863 988 ---------EKLRQRLEQAEQERTRAREQLRQAQAQLAQYN-------------------QVLASLKSSYDAKRQMLQEL 1039
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657580 676 LWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDH---EREVENLENQLRAANMEH---ENQIQESKKRDA 749
Cdd:PRK04863 1040 KQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLtfcEAEMDNLTKKLRKLERDYhemREQVVNAKAGWC 1119
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1958657580 750 QVI-----ADMEAQVHklREELINVNSH--RKQQLVELGLLR 784
Cdd:PRK04863 1120 AVLrlvkdNGVERRLH--RRELAYLSADelRSMSDKALGALR 1159
|
|
| |
