|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
65-150 |
2.15e-30 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 114.68 E-value: 2.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 65 LDAEFDHFVVDMKPFVLKLPHRSERQRCALWIRKLCEPSGTgagLMGRKNRNLYAKLLLHMLRRGVLEGPFTHRPEPGTL 144
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 1958657576 145 KVLPSY 150
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
609-943 |
7.33e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 7.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 609 SELDKEKEDAQRKIHKFEEAL-------KEKEEQLGRVtEVQRLQAQQADAALEEFK-RQVEVTSEKvYSDMKEQMEKVE 680
Cdd:COG1196 168 SKYKERKEEAERKLEATEENLerledilGELERQLEPL-ERQAEKAERYRELKEELKeLEAELLLLK-LRELEAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 681 ADLSRSKSLREKQSKEfLWQLEDARQRYEQQIVELKLEHEqEKTHLLQQHNAEKDSLVRDHEREVE---NLENQLRAANM 757
Cdd:COG1196 246 AELEELEAELEELEAE-LAELEAELEELRLELEELELELE-EAQAEEYELLAELARLEQDIARLEErrrELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 758 EHEnQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKK 837
Cdd:COG1196 324 ELA-ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 838 THAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQkfEDEKQQLIRDNDQ 917
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE--LLEEAALLEAALA 480
|
330 340
....*....|....*....|....*.
gi 1958657576 918 AIKALQDELETRSNQVRSAEKKLQHK 943
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
354-927 |
1.39e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 354 KKQTETEETVRKLEKKVQIL--------IRDCQVIRETKENQITELKKICEQSTESLNndwekKLHSAVAEMEKEKFELQ 425
Cdd:COG1196 206 ERQAEKAERYRELKEELKELeaellllkLRELEAELEELEAELEELEAELEELEAELA-----ELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 426 KHHTETIQELLEdTNVRLSKMEGDYMVQTQstnhMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQE 505
Cdd:COG1196 281 LELEEAQAEEYE-LLAELARLEQDIARLEE----RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 506 LKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEhalstsktsvviEELEQNIRQLKQQVQESELQRKQQVKDQ 585
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA------------AELAAQLEELEEAEEALLERLERLEEEL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 586 EDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTS 665
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 666 EKVYSDMKEQMEKVEAD-LSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNA--------EKDS 736
Cdd:COG1196 504 EGFLEGVKAALLLAGLRgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 737 LVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARD 816
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 817 HETAVKKLKAESERVKMELKKTHAAEtEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQttiSSLKEESSRQQLAAERR 896
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLA-EEELELEEALLAEEEEERELAEAEEERLEEELE---EEALEEQLEAEREELLE 739
|
570 580 590
....*....|....*....|....*....|.
gi 1958657576 897 LQDVIQKFEDEKQQLIRDNDQAIKALQDELE 927
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
604-941 |
2.76e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 2.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 604 VHELKSELD---KEKEDAQR-KIHKFEEALKEKEEQLGRVTEVQRlQAQQADAALEEFKRQVEVTsekvysdmKEQMEKV 679
Cdd:COG1196 195 LGELERQLEpleRQAEKAERyRELKEELKELEAELLLLKLRELEA-ELEELEAELEELEAELEEL--------EAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 680 EADLSRSKSLREKQSKEflwqLEDARQRYEQQIVELkLEHEQEKTHLLQQHNAEKDSLVRDhEREVENLENQLRAANmEH 759
Cdd:COG1196 266 EAELEELRLELEELELE----LEEAQAEEYELLAEL-ARLEQDIARLEERRRELEERLEEL-EEELAELEEELEELE-EE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 760 ENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTH 839
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 840 AAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKfeDEKQQLIRDNDQAI 919
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL--LEELAEAAARLLLL 496
|
330 340
....*....|....*....|..
gi 1958657576 920 KALQDELETRSNQVRSAEKKLQ 941
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAG 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
297-988 |
3.88e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 297 DHFLSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILird 376
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL--- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 377 cQVIRETKENQITELKKICEQStESLNNDWEKKL---HSAVAEMEKEKfELQKHHTETIQELLEDTNVRLSKMEGDYMVQ 453
Cdd:TIGR02168 350 -KEELESLEAELEELEAELEEL-ESRLEELEEQLetlRSKVAQLELQI-ASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 454 TQS-TNHMIKDLEGRV-------QQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHL--VND 523
Cdd:TIGR02168 427 LKKlEEAELKELQAELeeleeelEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLegFSE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 524 YEQNVKLLKTKYDSDINILRQ------------EHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHM 591
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSElisvdegyeaaiEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 592 EKNHLKYI-YEEKVHELKSELDKEKEDAQRKIhkfeealkekEEQLGRVTEVQRLQAQQADAALEEFK-RQVEVTSEKVY 669
Cdd:TIGR02168 587 QGNDREILkNIEGFLGVAKDLVKFDPKLRKAL----------SYLLGGVLVVDDLDNALELAKKLRPGyRIVTLDGDLVR 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 670 SD---MKEQMEKVEADLSRSKSLRE-----KQSKEFLWQLEDARQRYEQQIVELKLEHEQ---EKTHLLQQHNAEKDSLV 738
Cdd:TIGR02168 657 PGgviTGGSAKTNSSILERRREIEEleekiEELEEKIAELEKALAELRKELEELEEELEQlrkELEELSRQISALRKDLA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 739 RdHEREVENLENQLRAANMEHENQIQESKKRDAQvIADMEAQVHKLREELINVNSHRKQQLVELGLLREE--EKQRAARD 816
Cdd:TIGR02168 737 R-LEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldELRAELTL 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 817 HETAVKKLKaesERVKMELKKTHAAETEMT-LEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAER 895
Cdd:TIGR02168 815 LNEEAANLR---ERLESLERRIAATERRLEdLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 896 RLQDVIQKfeDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQmmyIRQEYETKFKGLMP-----ASL 970
Cdd:TIGR02168 892 LRSELEEL--SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER---LSEEYSLTLEEAEAlenkiEDD 966
|
730
....*....|....*...
gi 1958657576 971 RQELEDTISSLKSQVNFL 988
Cdd:TIGR02168 967 EEEARRRLKRLENKIKEL 984
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
253-986 |
9.13e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.15 E-value: 9.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 253 SDIEVRLNSWNLGIENPRYLRQKPLPVSLMTPKVSLRNSS-----------------------NLHDDHFLSRMHEKELD 309
Cdd:pfam02463 119 KEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIeeeaagsrlkrkkkealkklieeTENLAELIIDLEELKLQ 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 310 MKTKMMEAKFSEEKLKLQKKHDAEVQKIL-ERKNNELEELKILYKKKQTETEEtvrKLEKKVQILIRDCQVIRETKENQI 388
Cdd:pfam02463 199 ELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKLNEERIDLLQELLRDEQE---EIESSKQEIEKEEEKLAQVLKENK 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 389 TELKKICEQSTESLnndwEKKLHSAVAEMEKEKFELQKHHTETIQELLEDTNVRLSKMEGDYMVQTQSTNHMIKDLEGRV 468
Cdd:pfam02463 276 EEEKEKKLQEEELK----LLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKR 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 469 QQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHA- 547
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEi 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 548 LSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQ-EDKFHMEKNHLKYIY-EEKVHELKSELDKEKEDAQRKIHKF 625
Cdd:pfam02463 432 LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKsEDLLKETQLVKLQEQlELLLSRQKLEERSQKESKARSGLKV 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 626 EEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYS-DMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDA 704
Cdd:pfam02463 512 LLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATaDEVEERQKLVRALTELPLGARKLRLLIPKLKLPL 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 705 RQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKL 784
Cdd:pfam02463 592 KSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEL 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 785 REELINVnshRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQK 864
Cdd:pfam02463 672 TKELLEI---QELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 865 LAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKE 944
Cdd:pfam02463 749 EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 828
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1958657576 945 LEAQEQMMYIRQEYETKFKGLMPASLRQELEDTISSLKSQVN 986
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
556-929 |
1.36e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 556 VIEELEQNIRQLKQQVQESElqRKQQVKDQEDKFHMEKNHLKYiyeEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQ 635
Cdd:COG1196 194 ILGELERQLEPLERQAEKAE--RYRELKEELKELEAELLLLKL---RELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 636 LgrvtEVQRLQAQQADAALEEFKRQVEVTSEKVysDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVEL 715
Cdd:COG1196 269 L----EELRLELEELELELEEAQAEEYELLAEL--ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 716 KLEH---EQEKTHLLQQHNAEKDSLVRDHEREVENLE--NQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELIN 790
Cdd:COG1196 343 EEELeeaEEELEEAEAELAEAEEALLEAEAELAEAEEelEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 791 VNSHRKQQL----VELGLLREEEKQRAAR---DHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQ 863
Cdd:COG1196 423 LEELEEALAeleeEEEEEEEALEEAAEEEaelEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958657576 864 KLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEK-QQLIRDNDQAIKALQDELETR 929
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlQNIVVEDDEVAAAAIEYLKAA 569
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
318-1005 |
3.61e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 318 KFSEEKLKLQKKHDaEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQI----------LIRDCQVIRETKENQ 387
Cdd:TIGR02168 169 KYKERRKETERKLE-RTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELrelelallvlRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 388 ITELKKICEQSTESLNndwekKLHSAVAEMEKEKFELQKHHTEtIQELLEDTNVRLSKMEGDYMVQTQSTNHMIKDLEgr 467
Cdd:TIGR02168 248 LKEAEEELEELTAELQ-----ELEEKLEELRLEVSELEEEIEE-LQKELYALANEISRLEQQKQILRERLANLERQLE-- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 468 vqqlMGEAENSNLQRQKLTQEKLELERCYQITcsELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYD---SDINILRQ 544
Cdd:TIGR02168 320 ----ELEAQLEELESKLDELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESRLEELEEQLEtlrSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 545 EHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELkSELDKEKEDAQRKIHK 624
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 625 FEEALKEKEEQL----GRVTEVQRLQAQQAD---------AALEEFKRQVEVTSEKVYSDMKEQ---------------M 676
Cdd:TIGR02168 473 AEQALDAAERELaqlqARLDSLERLQENLEGfsegvkallKNQSGLSGILGVLSELISVDEGYEaaieaalggrlqavvV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 677 EKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVR-------DHEREVENLE 749
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllGGVLVVDDLD 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 750 NQLRAANMEH--------------------------ENQIQESKKRDAQV---IADMEAQVHKLREELINVNS--HRKQQ 798
Cdd:TIGR02168 633 NALELAKKLRpgyrivtldgdlvrpggvitggsaktNSSILERRREIEELeekIEELEEKIAELEKALAELRKelEELEE 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 799 LVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMT---------LEKANSRLKQIEKE--------- 860
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEaeieeleerLEEAEEELAEAEAEieeleaqie 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 861 -YTQKLAKSSQIIAELQTTISSLKEESSRQQLAA---ERRLQDVIQKFEDEKQQlIRDNDQAIKALQDELETRSNQVRSA 936
Cdd:TIGR02168 793 qLKEELKALREALDELRAELTLLNEEAANLRERLeslERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEELEELIEEL 871
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958657576 937 EKKLQHKELE---AQEQMMYIRQEYETKFKGLMPASL-RQELEDTISSLKSQVNFLQKRASILQEELTTYQSR 1005
Cdd:TIGR02168 872 ESELEALLNErasLEEALALLRSELEELSEELRELESkRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
306-941 |
3.64e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 306 KELDMKTKMMEAKFSEEKLKLQKKHdaEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKE 385
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELE--AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 386 NQITELkkicEQSTESLNNDWEKKLHSAVAEMEKEKFELQKHHTETIQEL-----LEDTNVRLSKMEGDYMVQTQSTNHM 460
Cdd:TIGR02168 418 RLQQEI----EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALeelreELEEAEQALDAAERELAQLQARLDS 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 461 IKDLEGRVQQLMGEAENSNLQRQKLTQ------EKLELERCYQITCSELqeLKTRQNLLHTEKEhlvNDYEQNVKLLK-- 532
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNQSGLSGilgvlsELISVDEGYEAAIEAA--LGGRLQAVVVENL---NAAKKAIAFLKqn 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 533 -----------TKYDSDINILRQEHALSTSK------------------------TSVVIEELEQNIRQLKQ-------- 569
Cdd:TIGR02168 569 elgrvtflpldSIKGTEIQGNDREILKNIEGflgvakdlvkfdpklrkalsyllgGVLVVDDLDNALELAKKlrpgyriv 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 570 ------------------QVQESELQRKQQVKDQEDKFHM--EKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEAL 629
Cdd:TIGR02168 649 tldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEEleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 630 KEKEEQLGRVT-EVQRLQAQQADAALEEFKRQVEVTSEkvysdmKEQMEKVEADLSRSKSLREKQSKEFLwQLEDARQRY 708
Cdd:TIGR02168 729 SALRKDLARLEaEVEQLEERIAQLSKELTELEAEIEEL------EERLEEAEEELAEAEAEIEELEAQIE-QLKEELKAL 801
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 709 EQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREVENLENQLRaanmehenQIQESKKRDAQVIADMEAQVHKLRE 786
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLErrIAATERRLEDLEEQIE--------ELSEDIESLAAEIEELEELIEELES 873
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 787 ELINVNSHRKQQLVELGLLRE--EEKQRAARDHETAVKKLKAEservkMELKKTHAAETEMTLEKANSRLKQIEKEYTQK 864
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSelEELSEELRELESKRSELRRE-----LEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 865 LAKSSQIIAELQTTISSLKEESSRQQLAAERRLQ-------DVIQKFEDEKQQLirdndqaikalqDELETRSNQVRSAE 937
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlAAIEEYEELKERY------------DFLTAQKEDLTEAK 1016
|
....
gi 1958657576 938 KKLQ 941
Cdd:TIGR02168 1017 ETLE 1020
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
288-941 |
2.21e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 288 LRNSSNLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKIL--YKKKQTETEETVRK 365
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 366 LEKKVQILIRDCQVIRETKENQITELKKICEQS-TESLNNDWEKKLHSAV---AEMEKEKFELQKHHTETIQELLEDTNV 441
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAkkkAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 442 RLSKMEGDYMVQTQSTNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQ---ELKTRQNLLHTEKE 518
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 519 HLVNDYEQNVKLLKTKYDSD----INILRQEHALSTSKTSVVIEELE--QNIRQLKQQVQESELQRKQQVKDQEDKFHME 592
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADeakkAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 593 KNH---------LKYIYEEKVHELKSELDKEKEDAQRKIHKFEEAlKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEV 663
Cdd:PTZ00121 1574 EDKnmalrkaeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 664 TSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDSLVRD 740
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 741 HEREVENLENQLRAANMEHEnqiQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETA 820
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 821 VKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDV 900
Cdd:PTZ00121 1810 IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADE 1889
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 1958657576 901 IQKFE-DEKQQLIRDNDQAIK---ALQDELETRSNQVRSAEKKLQ 941
Cdd:PTZ00121 1890 IEKIDkDDIEREIPNNNMAGKnndIIDDKLDKDEYIKRDAEETRE 1934
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
430-985 |
1.06e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 430 ETIQELLEDTNVRLSKMEgDYMVQTQSTNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQitcsELQELKTR 509
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 510 QNLLHTEKEHLvndyEQNVKLLKTKY---DSDINILRQEhalstsktsvvIEELEQNIRQLKQQVQESE----------- 575
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEKIrelEERIEELKKE-----------IEELEEKVKELKELKEKAEeyiklsefyee 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 576 -LQRKQQVKDQEDKFHMEKNHLKYIY---EEKVHELKsELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQAD 651
Cdd:PRK03918 305 yLDELREIEKRLSRLEEEINGIEERIkelEEKEERLE-ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 652 AALEEFKRQVEvTSEKVYSDMKEQMEKVEADLSRSKSlREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEkthLLQQHN 731
Cdd:PRK03918 384 LTPEKLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 732 AEKDSlVRDHEREVENLENQLRAANMEHENQIQESKKRDAQviadmeaqvHKLREELINVnshrKQQLVELGLLREEEKQ 811
Cdd:PRK03918 459 AELKR-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKEL----EEKLKKYNLEELEKKA 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 812 RAARDHETAVKKLKAESERVKMELKKTHA-----AETEMTLEKANSRLKQIEKEYTQKLAKSsqiIAELQTTISSLKEES 886
Cdd:PRK03918 525 EEYEKLKEKLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPFY 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 887 SR--QQLAAERRLQDVIQKFEDEKQQLirdnDQAIKALQD---ELETRSNQVRSAEKKLQHKELE-AQEQMMYIRQEYET 960
Cdd:PRK03918 602 NEylELKDAEKELEREEKELKKLEEEL----DKAFEELAEtekRLEELRKELEELEKKYSEEEYEeLREEYLELSRELAG 677
|
570 580
....*....|....*....|....*.
gi 1958657576 961 KFKGLMPA-SLRQELEDTISSLKSQV 985
Cdd:PRK03918 678 LRAELEELeKRREEIKKTLEKLKEEL 703
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
609-998 |
1.60e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 609 SELDKEKEDA-------QRKIHKFEEALKEKEEQLGRVtEVQRLQAQQADAALEEfKRQVEVTSE-KVYSDMKEQMEKVE 680
Cdd:TIGR02169 166 AEFDRKKEKAleeleevEENIERLDLIIDEKRQQLERL-RREREKAERYQALLKE-KREYEGYELlKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 681 ADLSRskslREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLvRDHEREVENLENQLRAANMEHE 760
Cdd:TIGR02169 244 RQLAS----LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI-GELEAEIASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 761 nqiqeskkrdaqviaDMEAQVHKLREELinvnshRKQQLVELGLLREEEKQRAARDH-ETAVKKLKAESERVKMELKKth 839
Cdd:TIGR02169 319 ---------------DAEERLAKLEAEI------DKLLAEIEELEREIEEERKRRDKlTEEYAELKEELEDLRAELEE-- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 840 aaetemtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQqlaaerrlqdviqkfeDEKQQLIRDNDQAI 919
Cdd:TIGR02169 376 -------VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL----------------SEELADLNAAIAGI 432
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657576 920 KALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLmpaslrQELEDTISSLKSQVNFLQKRASILQEE 998
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY------DRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
460-941 |
1.72e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 58.65 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 460 MIKDLEGRVQQLMgeAENSNLQRQ----------------KLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLvnd 523
Cdd:pfam01576 27 ELKELEKKHQQLC--EEKNALQEQlqaetelcaeaeemraRLAARKQELEEILHELESRLEEEEERSQQLQNEKKKM--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 524 yEQNVKLLKTKYDSDiNILRQEHALSTSKTSVVIEELEQNIRQLKqqvqeselqrkqqvkDQEDKFHMEKNHLkyiyEEK 603
Cdd:pfam01576 102 -QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLE---------------DQNSKLSKERKLL----EER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 604 VHELKSELDKEKEDAqrkihKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVY---SDMKEQMEKVE 680
Cdd:pfam01576 161 ISEFTSNLAEEEEKA-----KSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 681 ADLSRS----------------------KSLREKQS-----KEFLWQLEDARQRYEQQIVELKLEHEQEKTHLL--QQHN 731
Cdd:pfam01576 236 AQLAKKeeelqaalarleeetaqknnalKKIRELEAqiselQEDLESERAARNKAEKQRRDLGEELEALKTELEdtLDTT 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 732 AEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEK- 810
Cdd:pfam01576 316 AAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRt 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 811 -QRAARDHETAVKKLKA----------ESERVKMEL-KKTHAAETEmtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTT 878
Cdd:pfam01576 396 lQQAKQDSEHKRKKLEGqlqelqarlsESERQRAELaEKLSKLQSE--LESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958657576 879 ISSLKEEsSRQQLAAERRLqdviQKFEDEK---QQLIRDNDQAIKALQDELETRSNQVRSAEKKLQ 941
Cdd:pfam01576 474 QELLQEE-TRQKLNLSTRL----RQLEDERnslQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLE 534
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
558-961 |
2.21e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 558 EELEQNIRQLKQQVQESELQRK-QQVKDQEDKFHMEKNHlKYIYEEKVHELKSELDkEKEDAQRKIHKFEEAlKEKEEQL 636
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKaDELKKAEEKKKADEAK-KAEEKKKADEAKKKAE-EAKKADEAKKKAEEA-KKKADAA 1334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 637 GRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSD-MKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEqqivEL 715
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAeKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----EL 1410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 716 KLEHEQEKthllqqhNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHR 795
Cdd:PTZ00121 1411 KKAAAAKK-------KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 796 KQQlvELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQI-IAE 874
Cdd:PTZ00121 1484 KAD--EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkKAE 1561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 875 LQTTISSLKEESSRQQLAA----------ERRLQDVIQKFEDEK----QQLIRDNDQAIKA--LQDELETRSN----QVR 934
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALrkaeeakkaeEARIEEVMKLYEEEKkmkaEEAKKAEEAKIKAeeLKKAEEEKKKveqlKKK 1641
|
410 420
....*....|....*....|....*..
gi 1958657576 935 SAEKKLQHKELEAQEQMMYIRQEYETK 961
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
322-1005 |
4.17e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 322 EKLKLQKKHDAEVQKILERKNNELEEL------KILYKKKQTETEET-VRKLEKKVQILIRDcqviRETKENQITELKKI 394
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLrrerekAERYQALLKEKREYeGYELLKEKEALERQ----KEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 395 CEQSTESLNndwekklhsavaEMEKEkfelqkhhTETIQELLEDTNVRLSKMEGDYMVQTQSTnhmIKDLEGRVQQLMGE 474
Cdd:TIGR02169 253 LEKLTEEIS------------ELEKR--------LEEIEQLLEELNKKIKDLGEEEQLRVKEK---IGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 475 AENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQnvklLKTKYD---SDINILRQEHALSTS 551
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE----LKEELEdlrAELEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 552 KTSVVIEELEQNIRQLKQ-QVQESELQRKQQVKDQEDKFHmeKNHLKYIYEEKvhelkSELDKEKEDAQRKIHKFEEALK 630
Cdd:TIGR02169 386 ELKDYREKLEKLKREINElKRELDRLQEELQRLSEELADL--NAAIAGIEAKI-----NELEEEKEDKALEIKKQEWKLE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 631 EKEEQLGRV--------TEVQRLQAQQADAALE----EFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFL 698
Cdd:TIGR02169 459 QLAADLSKYeqelydlkEEYDRVEKELSKLQRElaeaEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 699 WQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL-----VRDHEREVENLENQLR---AANM-EHENQIQESKK- 768
Cdd:TIGR02169 539 TAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFlplnkMRDERRDLSILSEDGVigfAVDLvEFDPKYEPAFKy 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 769 --RDAQVIADMEAQvhklREELINV-----------------NSHRKQQLVELGLLREEEKQRAARDHEtavKKLKAESE 829
Cdd:TIGR02169 619 vfGDTLVVEDIEAA----RRLMGKYrmvtlegelfeksgamtGGSRAPRGGILFSRSEPAELQRLRERL---EGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 830 RVKMELK--KTHAAETEMTLEKANSRLKQIEKEYT---QKLAKSSQIIAELQTTISSLKEE-----SSRQQLAAE-RRLQ 898
Cdd:TIGR02169 692 SLQSELRriENRLDELSQELSDASRKIGEIEKEIEqleQEEEKLKERLEELEEDLSSLEQEienvkSELKELEARiEELE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 899 DVIQKFEDEKQQL-IRDNDQAIKALQDELETRSNQVRSAEKKLQhkELEAQEQMMYIRQEY-ETKFKGLMpaSLRQELED 976
Cdd:TIGR02169 772 EDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLR--EIEQKLNRLTLEKEYlEKEIQELQ--EQRIDLKE 847
|
730 740
....*....|....*....|....*....
gi 1958657576 977 TISSLKSQVNFLQKRASILQEELTTYQSR 1005
Cdd:TIGR02169 848 QIKSIEKEIENLNGKKEELEEELEELEAA 876
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
672-1002 |
6.76e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 6.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 672 MKEQMEKVEADLSRSKSLREKQSKEfLWQLEDARQRYEQQIVELKLEHEQekthLLQQHNAEKdslvrdheREVENLENQ 751
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENR-LDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLK--------ERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 752 LRAANMEHENQIQESKKRDAqVIADMEAQVHKLREELINVNshrkqqlvelgllreeekqraARDHETAVKKLKAESERV 831
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEA-RIEELEEDLHKLEEALNDLE---------------------ARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 832 KMELKKthaaetemtLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEessrqQLAAERRLQDVIQKFEDEKQQL 911
Cdd:TIGR02169 804 EEEVSR---------IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE-----QIKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 912 IRDNDQAIKALQDELetrsnqvrsaeKKLQHKELEAQEQMMYIRQEYetkfkglmpaslrQELEDTISSLKSQVNFLQKR 991
Cdd:TIGR02169 870 LEELEAALRDLESRL-----------GDLKKERDELEAQLRELERKI-------------EELEAQIEKKRKRLSELKAK 925
|
330
....*....|.
gi 1958657576 992 ASILQEELTTY 1002
Cdd:TIGR02169 926 LEALEEELSEI 936
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
556-1001 |
7.12e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 7.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 556 VIEELEQNIRQLKQQVQES-ELQRKQ-----------QVKDQEdkFHMEKNHLKYIyeeKVHELKSELDKeKEDAQRKIH 623
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQkfylrqsvidlQTKLQE--MQMERDAMADI---RRRESQSQEDL-RNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 624 KFEEALKEKEEQLGRV-TEVQRLQAQ--QADAALEEFKRQV----EVTSEKVYS-DMKEQMEKVEADLSRSKSLREKQSK 695
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSnTQIEQLRKMmlSHEGVLQEIRSILvdfeEASGKKIYEhDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 696 efLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEhENQIQeskkrdaqvia 775
Cdd:pfam15921 233 --ISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ----------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 776 dmeAQVHKLREELINVNSHRKQQLVELgllreeekqraardhETAVKKLKAESERVKmELKKTHAAETEMTLEKANSRLK 855
Cdd:pfam15921 299 ---SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 856 QIEKEYTQKLAKSSQIIAELQTTISSLKEEssRQQLAAERrlqdviqkfEDEKQQLIRD--NDQAIKALQDELETRSNQV 933
Cdd:pfam15921 360 EARTERDQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDtgNSITIDHLRRELDDRNMEV 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657576 934 RSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 1001
Cdd:pfam15921 429 QRLEALLKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
552-941 |
7.92e-08 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 56.38 E-value: 7.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 552 KTSVVIEELEQNIRQLKQQVQESeLQRKQQVKDQEDKFHMEKNHLKYIYEEkvheLKSELDkekedAQRkiHKFEEALKE 631
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLL-----ANR--FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 632 KEEQLgrvtevqrlqaQQADAALEEFKRQVE----VTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQR 707
Cdd:PRK04778 170 LEKQL-----------ENLEEEFSQFVELTEsgdyVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 708 YEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAAN---------MEHE----NQIQESKKRDAQV 773
Cdd:PRK04778 239 YRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTLPDF 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 774 IADMEAQVHKLREELinvnshrkQQLVELGLLREEEKQRaARDHETAVKKLKAESERVKMELKKTHAA--ETEMTLEKAN 851
Cdd:PRK04778 319 LEHAKEQNKELKEEI--------DRVKQSYTLNESELES-VRQLEKQLESLEKQYDEITERIAEQEIAysELQEELEEIL 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 852 SRLKQIEKEytqklakssqiIAELQTTISSLKEEssrqQLAAERRLQDVIQKFEDEKQQLIRDNDQAI-KALQDELETRS 930
Cdd:PRK04778 390 KQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSNLPGLpEDYLEMFFEVS 454
|
410
....*....|.
gi 1958657576 931 NQVRSAEKKLQ 941
Cdd:PRK04778 455 DEIEALAEELE 465
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
288-1006 |
1.00e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 288 LRNSSNLHDDHFLSrMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERK-NNELEELKILYKKKQTETEETVRKL 366
Cdd:pfam15921 94 LNESNELHEKQKFY-LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQlQNTVHELEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 367 EKKVQILIRDCQVIRETK----ENQITELKKICEQstESLNNDWEKKLHSAVAEMEKE---KFELQKHHTETIQELLEDT 439
Cdd:pfam15921 173 EQLRKMMLSHEGVLQEIRsilvDFEEASGKKIYEH--DSMSTMHFRSLGSAISKILREldtEISYLKGRIFPVEDQLEAL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 440 NVR-LSKMEGDYMVQTQSTNHMIKDLEGRVQQLMGEAENSNLQRQKLtQEKLEL-----ERCYQITCSELQELKTRQNLL 513
Cdd:pfam15921 251 KSEsQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI-QSQLEIiqeqaRNQNSMYMRQLSDLESTVSQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 514 HTEKEHLVNDYEQNVKLLKTKY---DSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVK--DQEDK 588
Cdd:pfam15921 330 RSELREAKRMYEDKIEELEKQLvlaNSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTG 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 589 FHMEKNHLKYIYEEK---VHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVqrlqAQQADAALEEFKRQVEVTS 665
Cdd:pfam15921 410 NSITIDHLRRELDDRnmeVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSL----TAQLESTKEMLRKVVEELT 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 666 EKVYSdmKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELK--------LEHEQEKTHLLQQHNAEKDSL 737
Cdd:pfam15921 486 AKKMT--LESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKV 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 738 VRDHEREVENLenqlraanmeheNQIQESKKRDAQVIADMEAQVHKlreeliNVNShRKQQLVELGLLREEeKQRAARDH 817
Cdd:pfam15921 564 IEILRQQIENM------------TQLVGQHGRTAGAMQVEKAQLEK------EIND-RRLELQEFKILKDK-KDAKIREL 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 818 ETAVKKLkaESERVKMelkkthaaetemtLEKANSRLKQIEKEYTQKlaksSQIIAELQTTISSLKEESSRQQLAaERRL 897
Cdd:pfam15921 624 EARVSDL--ELEKVKL-------------VNAGSERLRAVKDIKQER----DQLLNEVKTSRNELNSLSEDYEVL-KRNF 683
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 898 QDVIQKFEDEKQQLirdnDQAIKALQDELETRSNQVRSAEKKLQHkeleAQEQMMYIRQEYETKfKGLMPA--SLRQELE 975
Cdd:pfam15921 684 RNKSEEMETTTNKL----KMQLKSAQSELEQTRNTLKSMEGSDGH----AMKVAMGMQKQITAK-RGQIDAlqSKIQFLE 754
|
730 740 750
....*....|....*....|....*....|.
gi 1958657576 976 DTISSLKSQVNFLQKRASILQEELTTYQSRR 1006
Cdd:pfam15921 755 EAMTNANKEKHFLKEEKNKLSQELSTVATEK 785
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
558-961 |
1.06e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 558 EELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEK----NHLKYIYEE--KVHELKSELDkEKEDAQRKIHKFEEA--- 628
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkkaDEAKKKAEEakKADEAKKKAE-EAKKAEEAKKKAEEAkka 1472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 629 --LKEKEEQLGRVTEVQRlQAQQADAALEEFKRQVEvtSEKVYSDMKEQMEKVEADLSR----------SKSLREKQSKE 696
Cdd:PTZ00121 1473 deAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAE--AKKKADEAKKAEEAKKADEAKkaeeakkadeAKKAEEKKKAD 1549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 697 FLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQ----HNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQ 772
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaeeaKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 773 VIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESE-RVKMELKKTHAAETEmtlekan 851
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDeKKAAEALKKEAEEAK------- 1702
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 852 sRLKQIEKEYTQKLAKSSQIIAELQttISSLKEESSRQQLAAERRLQDVIQKFEDEKQQlirdndqaIKALQDELETRSN 931
Cdd:PTZ00121 1703 -KAEELKKKEAEEKKKAEELKKAEE--ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK--------IAHLKKEEEKKAE 1771
|
410 420 430
....*....|....*....|....*....|
gi 1958657576 932 QVRSAEKKLQHKELEAQEQMMYIRQEYETK 961
Cdd:PTZ00121 1772 EIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
321-691 |
1.75e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 321 EEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKL---EKKVQILIRDCQVIRETKENQITELKKICEQ 397
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 398 STESLNNDWEKKLHSAVAEMEKEKFELQkhhTETIQELLEDTNVRLSKMEGDYmvqtQSTNHMIKDLEGRVQQLMGEAEN 477
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQ---IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 478 SNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQnvkllktkydsdINILRQEHALSTSKTSVVI 557
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS------------LEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 558 EELEQNIRQLKQQVQESElQRKQQVKDQEDKFHMEKNHLK-------YIYEEKVHELKSELDKEKEDAQRKIHKFEEALK 630
Cdd:TIGR02168 904 RELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQerlseeySLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958657576 631 EkeeqLGRVTEvqrlqaqqadAALEEFKRQvevtsEKVYSDMKEQMEkveaDLSRSK-SLRE 691
Cdd:TIGR02168 983 E----LGPVNL----------AAIEEYEEL-----KERYDFLTAQKE----DLTEAKeTLEE 1021
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
619-967 |
2.54e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 619 QRKIHKFE-EALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEkveadLSRSKSLREKQSKEF 697
Cdd:pfam17380 290 QEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE-----LERIRQEERKRELER 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 698 LWQLEDARQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQiqESKKRDAQVIAD 776
Cdd:pfam17380 365 IRQEEIAMEISRMRELErLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE--EARQREVRRLEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 777 MEA-QVHKLREElinvnSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRlK 855
Cdd:pfam17380 443 ERArEMERVRLE-----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR-K 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 856 QIEKEYTQKlaksSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLirdndqaiKALQDELETRsNQVRS 935
Cdd:pfam17380 517 LLEKEMEER----QKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------EAMEREREMM-RQIVE 583
|
330 340 350
....*....|....*....|....*....|..
gi 1958657576 936 AEKklQHKELEAQEQMMYIRQEYETKFKGLMP 967
Cdd:pfam17380 584 SEK--ARAEYEATTPITTIKPIYRPRISEYQP 613
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
557-910 |
2.65e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 557 IEELEQNIRQLKQQVQESElqRKQQVKDQEdkfhmeknhlkyiYEEKVHELKsELDKEKEDAQRKIHKFEEALKEKEEQL 636
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELE--EDLSSLEQE-------------IENVKSELK-ELEARIEELEEDLHKLEEALNDLEARL 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 637 GRVtevqrlQAQQADAALEEFKRQVevtsekvySDMKEQMEKVEADLSRSKSLREkqskeflwQLEDARQRYEQQIVELK 716
Cdd:TIGR02169 789 SHS------RIPEIQAELSKLEEEV--------SRIEARLREIEQKLNRLTLEKE--------YLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 717 L--EHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQ---LRAANMEHENQIQESKKRdaqvIADMEAQVHKLREELinv 791
Cdd:TIGR02169 847 EqiKSIEKEIENLNGKKEELEEELEELEAALRDLESRlgdLKKERDELEAQLRELERK----IEELEAQIEKKRKRL--- 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 792 nshrKQQLVELGLLREEEKQ-RAARDHETAVKKLKAESERVKMELKKTHAAetEMTLEKANSRLKQiekEYtqklakssq 870
Cdd:TIGR02169 920 ----SELKAKLEALEEELSEiEDPKGEDEEIPEEELSLEDVQAELQRVEEE--IRALEPVNMLAIQ---EY--------- 981
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958657576 871 iiAELQTTISSLKEEssRQQLAAERR-LQDVIQKFEDEKQQ 910
Cdd:TIGR02169 982 --EEVLKRLDELKEK--RAKLEEERKaILERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
300-911 |
2.95e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 2.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 300 LSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQV 379
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 380 IRETKENQITELKKIceQSTESLNNDWEKKLHSAVAEMEKEKFELqkhhtETIQELLEDTNVRLSKMEgdymvqtQSTNH 459
Cdd:COG1196 311 RRELEERLEELEEEL--AELEEELEELEEELEELEEELEEAEEEL-----EEAEAELAEAEEALLEAE-------AELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 460 MIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERcyqitcsELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDI 539
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEA-------LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 540 NILRQEHALSTSKTSvvIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQ 619
Cdd:COG1196 450 EEAELEEEEEALLEL--LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 620 RKIHKFEEALKEKEEQLG-RVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFL 698
Cdd:COG1196 528 VLIGVEAAYEAALEAALAaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 699 WQLEDAR-QRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADM 777
Cdd:COG1196 608 LREADARyYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 778 EAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAA-----ETEMTLEKANS 852
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEaleelPEPPDLEELER 767
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958657576 853 RLKQIEKEytqklakssqiIAEL----QTTISSLKEESSR-----QQLA----AERRLQDVIQKFEDEKQQL 911
Cdd:COG1196 768 ELERLERE-----------IEALgpvnLLAIEEYEELEERydflsEQREdleeARETLEEAIEEIDRETRER 828
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
648-885 |
7.82e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 7.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 648 QQADAALEEFKRqvevtsekvYSDMKEQMEKVEADLSRSKSLREKQSKefLWQLEDARQRYEQQIVELKLEHEQEKTHLL 727
Cdd:COG4913 225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 728 QQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQ---QLVELGL 804
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 805 ---LREEEKQRAARDHETAVKKLKAESERVkmelkKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISS 881
Cdd:COG4913 374 plpASAEEFAALRAEAAALLEALEEELEAL-----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
....
gi 1958657576 882 LKEE 885
Cdd:COG4913 449 LAEA 452
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
565-722 |
9.31e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 52.86 E-value: 9.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 565 RQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQR 644
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLE 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657576 645 LQAQQADAALEEFKRQvEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLwqLEDARQRYEQQIVELKLEHEQE 722
Cdd:PRK12704 107 KREEELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
504-990 |
1.34e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 504 QELKTRQNL---LHTEKEHLVNDYEQNVKLLKtKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQ--ESELQR 578
Cdd:pfam12128 248 QEFNTLESAelrLSHLHFGYKSDETLIASRQE-ERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAkdRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 579 KQQVKDQEDKFHMEKNHLKYIYEEKVH---ELKSELDKEKEDAQRKIHKFEEALKEKEEQlGRVTEVQRLQaQQADAALE 655
Cdd:pfam12128 327 LEDQHGAFLDADIETAAADQEQLPSWQselENLEERLKALTGKHQDVTAKYNRRRSKIKE-QNNRDIAGIK-DKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 656 EFKRQVEVTS---EKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYE----QQIVELKLEHEQEKthlLQ 728
Cdd:pfam12128 405 ARDRQLAVAEddlQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPElllqLENFDERIERAREE---QE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 729 QHNAEKDSLVRDHEREVENLENQLRAANMEHEnQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELglLREE 808
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASR-RLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKV--ISPE 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 809 EKQRAARDHETAVKKLKAESE--RVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELqTTISSLKEES 886
Cdd:pfam12128 559 LLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL-VQANGELEKA 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 887 SRQQLAAERRLQ---DVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKE-----------LEAQEQMM 952
Cdd:pfam12128 638 SREETFARTALKnarLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHqawleeqkeqkREARTEKQ 717
|
490 500 510
....*....|....*....|....*....|....*...
gi 1958657576 953 YIRQEYETKFKGLMpASLRQELEDTISSLKSQVNFLQK 990
Cdd:pfam12128 718 AYWQVVEGALDAQL-ALLKAAIAARRSGAKAELKALET 754
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
539-751 |
2.68e-06 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 51.58 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 539 INILRQEHALstsKTSVVIEELEQNIRQLKqqvqeseLQRKQQVKDqedkfhmeknhlkyiyeekVHELKSELDKEKEDA 618
Cdd:pfam10168 541 TQVFREEYLK---KHDLAREEIQKRVKLLK-------LQKEQQLQE-------------------LQSLEEERKSLSERA 591
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 619 QRKIHKFEEALKEKEEQLGRVTEV-QRLQAQQADAALEE--FKRQVEvtsekvysDMKEQMEKVEADLSRSKSLREKQSK 695
Cdd:pfam10168 592 EKLAEKYEEIKDKQEKLMRRCKKVlQRLNSQLPVLSDAEreMKKELE--------TINEQLKHLANAIKQAKKKMNYQRY 663
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958657576 696 eflwQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDhereVENLENQ 751
Cdd:pfam10168 664 ----QIAKSQSIRKKSSLSLSEKQRKTIKEILKQLGSEIDELIKQ----VKDINKH 711
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
567-910 |
3.02e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 567 LKQQVQESELQRKQQVKDQEDKFH-MEKNHLKYIYEEKVHELKSELD-KEKEDAQRKIHKFEEALKEKEEQLG--RVTEV 642
Cdd:pfam17380 271 LNQLLHIVQHQKAVSERQQQEKFEkMEQERLRQEKEEKAREVERRRKlEEAEKARQAEMDRQAAIYAEQERMAmeREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 643 QRLQAQQADAALEEFKRQ-VEVTSEKVYSDMKEQMEKVEADlSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQ 721
Cdd:pfam17380 351 ERIRQEERKRELERIRQEeIAMEISRMRELERLQMERQQKN-ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 722 EKTHLLQQHNAEKDslvRDHEREVENLENQLRAANMEHENQiQESKKRDAQVIADMEAQVHKLREELinvnshrKQQLVE 801
Cdd:pfam17380 430 EEARQREVRRLEEE---RAREMERVRLEEQERQQQVERLRQ-QEEERKRKKLELEKEKRDRKRAEEQ-------RRKILE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 802 LGLlreEEKQRAARDHETAVKKLKAEservkMELKKTHAAETEMTLEKANSRLKQIEKEYTQKlakssqiiaeLQTTISS 881
Cdd:pfam17380 499 KEL---EERKQAMIEEERKRKLLEKE-----MEERQKAIYEEERRREAEEERRKQQEMEERRR----------IQEQMRK 560
|
330 340
....*....|....*....|....*....
gi 1958657576 882 LKEESSRQQlAAERRLQDVIQKFEDEKQQ 910
Cdd:pfam17380 561 ATEERSRLE-AMEREREMMRQIVESEKAR 588
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
356-914 |
3.02e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.26 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 356 QTETEETVRKLEKKVQILIrdcqVIRETKENQITELKKICEQSTESLNNDWEK-KLHSAVAEMEKEKFELQKHHTETIQE 434
Cdd:pfam05483 228 EEEYKKEINDKEKQVSLLL----IQITEKENKMKDLTFLLEESRDKANQLEEKtKLQDENLKELIEKKDHLTKELEDIKM 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 435 LLEDTNVRLSKMEGDYMVQTQSTNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLH 514
Cdd:pfam05483 304 SLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIIT 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 515 TEKEHLVNDYEQNVKLLKTK---YDSDINILRQEHALSTSKTSVviEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHM 591
Cdd:pfam05483 384 MELQKKSSELEEMTKFKNNKeveLEELKKILAEDEKLLDEKKQF--EKIAEELKGKEQELIFLLQAREKEIHDLEIQLTA 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 592 EKNHLKYiYEEKVHELKSELDKEK-EDAQRKIHKFEEALKEKEeqlgrvtevqrLQAQQADAALEEFKRQVEVTSEKVYS 670
Cdd:pfam05483 462 IKTSEEH-YLKEVEDLKTELEKEKlKNIELTAHCDKLLLENKE-----------LTQEASDMTLELKKHQEDIINCKKQE 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 671 D-MKEQMEKVEADLSRSKSLREKQSKEFLWQLEDarqryeqqiVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLE 749
Cdd:pfam05483 530 ErMLKQIENLEEKEMNLRDELESVREEFIQKGDE---------VKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 750 NQLRAANMEHENQIQESKKRDAQVIAD------MEAQVHKLREELIN--------VNSHRKQ----QLVELGLLREEEKQ 811
Cdd:pfam05483 601 KQIENKNKNIEELHQENKALKKKGSAEnkqlnaYEIKVNKLELELASakqkfeeiIDNYQKEiedkKISEEKLLEEVEKA 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 812 RAARDHETAVKK---LKAESERVKM-ELKKTHAAETEMTLEKANSRLKQiekeYTQKLAKSSQIIAELQTTISSLKEE-- 885
Cdd:pfam05483 681 KAIADEAVKLQKeidKRCQHKIAEMvALMEKHKHQYDKIIEERDSELGL----YKNKEQEQSSAKAALEIELSNIKAEll 756
|
570 580
....*....|....*....|....*....
gi 1958657576 886 SSRQQLAAERRLQDVIQKFEDEKQQLIRD 914
Cdd:pfam05483 757 SLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
666-1006 |
5.96e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 5.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 666 EKVYSDMKEQMEKVEADLSRSKSLREKQsKEFLwqledarqryEQQIVELKLEheqekthlLQQHNAEKDSLVRDHEREV 745
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQ-KFYL----------RQSVIDLQTK--------LQEMQMERDAMADIRRRES 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 746 ---ENLENQLRaaNMEHENQIQESKKRDaqVIADMEAQVHKLreelinvnshRKQQLVELGLLREeekqraardhetaVK 822
Cdd:pfam15921 138 qsqEDLRNQLQ--NTVHELEAAKCLKED--MLEDSNTQIEQL----------RKMMLSHEGVLQE-------------IR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 823 KLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESsrqqlaaERRLQDVIQ 902
Cdd:pfam15921 191 SILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES-------QNKIELLLQ 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 903 KFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQ-MMYIRQEYETKFkglMPASLRQELEDTISSL 981
Cdd:pfam15921 264 QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnSMYMRQLSDLES---TVSQLRSELREAKRMY 340
|
330 340
....*....|....*....|....*
gi 1958657576 982 KSQVNFLQKRASILQEELTTYQSRR 1006
Cdd:pfam15921 341 EDKIEELEKQLVLANSELTEARTER 365
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
481-849 |
6.49e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 6.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 481 QRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEEL 560
Cdd:pfam02463 673 KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 561 EQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVT 640
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 641 EVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHE 720
Cdd:pfam02463 833 EELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLL 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 721 QEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRdaqviadmEAQVHKLREELINVNSHRKQQLV 800
Cdd:pfam02463 913 EEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER--------NKRLLLAKEELGKVNLMAIEEFE 984
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1958657576 801 ELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEK 849
Cdd:pfam02463 985 EKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGW 1033
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
322-922 |
6.80e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 6.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 322 EKLKLQKKHDAEVQKILERKNnelEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQ---ITELKKICEQS 398
Cdd:pfam12128 340 ETAAADQEQLPSWQSELENLE---ERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIreaRDRQLAVAEDD 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 399 TESLNNDWEKKLHSAVAEMEKEKFELQKHHTE---------TIQELLEDTNVRLSKMEGDYMVQTQSTNHmIKDLEGRVQ 469
Cdd:pfam12128 417 LQALESELREQLEAGKLEFNEEEYRLKSRLGElklrlnqatATPELLLQLENFDERIERAREEQEAANAE-VERLQSELR 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 470 QLMGEAENSNLQRQKLTQEKLELercyQITCSELQE-LKTRQNLLHTEKEHLVNDYEQNV-------KLLKTKYDSDINI 541
Cdd:pfam12128 496 QARKRRDQASEALRQASRRLEER----QSALDELELqLFPQAGTLLHFLRKEAPDWEQSIgkvispeLLHRTDLDPEVWD 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 542 LRQEHALSTSKTSVVIEELEQNI-RQLKQQVQESELQRKQQVKDQEDKfhmeknhlkyiyEEKVHELKSELDKEKEDAQR 620
Cdd:pfam12128 572 GSVGGELNLYGVKLDLKRIDVPEwAASEEELRERLDKAEEALQSAREK------------QAAAEEQLVQANGELEKASR 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 621 KIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEvtsekvysdmkEQMEKVEAdlsrskslrekQSKEFLWQ 700
Cdd:pfam12128 640 EETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN-----------ERLNSLEA-----------QLKQLDKK 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 701 LEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIqESKKRDAQVIADMEAQ 780
Cdd:pfam12128 698 HQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDL-ASLGVDPDVIAKLKRE 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 781 VHKLREELINVNSHRKQQLVELGLLREEEKQRAARdHETAVKKLKAESERVKMELKKThAAETEMTLEKANSRLKQIEKE 860
Cdd:pfam12128 777 IRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPR-LATQLSNIERAISELQQQLARL-IADTKLRRAKLEMERKASEKQ 854
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 861 yTQKLAKSSQIIAELQTTISSLKEESSRQQLAAE-----RRLQDVIQKFEDEK---QQLIRDNDQAIKAL 922
Cdd:pfam12128 855 -QVRLSENLRGLRCEMSKLATLKEDANSEQAQGSigerlAQLEDLKLKRDYLSesvKKYVEHFKNVIADH 923
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
550-692 |
7.50e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 49.83 E-value: 7.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 550 TSKTSVVIEELEQNIRQLKQQVQESELQRKQQvkdqeDKFHMEknhlkyiYEEKVHELKSELDKEKEDAQRKIHK-FEEA 628
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA-----EKLKEE-------LEEKKEKLQEEEDKLLEEAEKEAQQaIKEA 582
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657576 629 LKEKEEQLGRVTEVQRLQ-----AQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREK 692
Cdd:PRK00409 583 KKEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
554-998 |
9.66e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 9.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 554 SVVIEELEQNIRQL-KQQVQESELQrKQQVKDQEDKFHMEKNHLKyIYEEKVHELKsELDKEKEDAQRKIHKFEEALKEK 632
Cdd:COG4717 45 AMLLERLEKEADELfKPQGRKPELN-LKELKELEEELKEAEEKEE-EYAELQEELE-ELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 633 EEQLGRVTEVQRLQaqQADAALEEFKRQVEVTSEKV--YSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQ 710
Cdd:COG4717 122 EKLLQLLPLYQELE--ALEAELAELPERLEELEERLeeLRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 711 QIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLREELIN 790
Cdd:COG4717 200 ELEELQQRLAELEEEL-----EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 791 V---------------------------NSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAET 843
Cdd:COG4717 275 IagvlflvlgllallflllarekaslgkEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 844 EMTLEKANSRLKQIEKEYTQKLAKSSQI-------IAELQTTISSLKEE--SSRQQLAAERRLQDVIQKFEDEKQ--QLI 912
Cdd:COG4717 355 EAEELEEELQLEELEQEIAALLAEAGVEdeeelraALEQAEEYQELKEEleELEEQLEELLGELEELLEALDEEEleEEL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 913 RDNDQAIKALQDELETRSNQVRSAEKKLqhKELEAQEQMMYIRQEYETKfkglmpASLRQELEDTISSLKSQVNFLQKRA 992
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAEL--EQLEEDGELAELLQELEEL------KAELRELAEEWAALKLALELLEEAR 506
|
....*.
gi 1958657576 993 SILQEE 998
Cdd:COG4717 507 EEYREE 512
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
384-998 |
9.69e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 384 KENQITELKKICEQSTESLNNDW--EKKLHSAVAEMEKEKFELQKHHTETIQ--ELLEDTNVRLSKMEGDYMVQTQSTNH 459
Cdd:pfam05483 104 KENKLQENRKIIEAQRKAIQELQfeNEKVSLKLEEEIQENKDLIKENNATRHlcNLLKETCARSAEKTKKYEYEREETRQ 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 460 MIKDLEGRVQQLMG-------EAENSNLQRQKLTQEKLE----LERCYQITCSELQELKTRQNLLHTEKEHLVNDyeqnV 528
Cdd:pfam05483 184 VYMDLNNNIEKMILafeelrvQAENARLEMHFKLKEDHEkiqhLEEEYKKEINDKEKQVSLLLIQITEKENKMKD----L 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 529 KLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLkQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELK 608
Cdd:pfam05483 260 TFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKEL-EDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQME 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 609 sELDKEKEDAQRKIHKFEEALKEKEEQLGrvTEVQRLQAQQADAAL---EEFKRQVEVTSEKVYSDMKE-QMEKVEADLS 684
Cdd:pfam05483 339 -ELNKAKAAHSFVVTEFEATTCSLEELLR--TEQQRLEKNEDQLKIitmELQKKSSELEEMTKFKNNKEvELEELKKILA 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 685 RSKSLREKQSKefLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSlVRDHEREVENLENQLRAANME------ 758
Cdd:pfam05483 416 EDEKLLDEKKQ--FEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTS-EEHYLKEVEDLKTELEKEKLKnielta 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 759 HENQIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQrAARDHETAVKKLKAESERVKMELKKT 838
Cdd:pfam05483 493 HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMN-LRDELESVREEFIQKGDEVKCKLDKS 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 839 --HAAETEMTLEKANSRLKQIEKE---YTQKLAKSSQIIAELQTTISSLKEESS--RQQLAA--------ERRLQDVIQK 903
Cdd:pfam05483 572 eeNARSIEYEVLKKEKQMKILENKcnnLKKQIENKNKNIEELHQENKALKKKGSaeNKQLNAyeikvnklELELASAKQK 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 904 FE---DEKQQLIRDNDQAIKALQDELETRSNQVRSA-------EKKLQHKELEAQEQMMYIRQEYET------------K 961
Cdd:pfam05483 652 FEeiiDNYQKEIEDKKISEEKLLEEVEKAKAIADEAvklqkeiDKRCQHKIAEMVALMEKHKHQYDKiieerdselglyK 731
|
650 660 670
....*....|....*....|....*....|....*..
gi 1958657576 962 FKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEE 998
Cdd:pfam05483 732 NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
420-798 |
1.09e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 420 EKFELQKHHTETIQELLEDTNVRLSKMEGDYMVQTQSTNHMI------KDLEGRVQQLMGEAENSNLQRQKLTQEKLELE 493
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLhivqhqKAVSERQQQEKFEKMEQERLRQEKEEKAREVE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 494 RCYQITCSEL--QELKTRQNLLHTEKEHLVNDYEQNVKLLKT--KYDSDINILRQEHALSTSKtsvvIEELE--QNIRQL 567
Cdd:pfam17380 314 RRRKLEEAEKarQAEMDRQAAIYAEQERMAMERERELERIRQeeRKRELERIRQEEIAMEISR----MRELErlQMERQQ 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 568 KQQVQESELQRKQQVKDQEdkfhmeKNHLKYIYEEKVHELKseLDKEKEDAQrkihkfEEALKEKEEQLGRVTEVQRLQA 647
Cdd:pfam17380 390 KNERVRQELEAARKVKILE------EERQRKIQQQKVEMEQ--IRAEQEEAR------QREVRRLEEERAREMERVRLEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 648 QQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREkqskeflwQLEDARQryeqqivelKLEHEQEKTHLL 727
Cdd:pfam17380 456 QERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLL 518
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 728 QQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAqVHKLREELINVNSHRKQQ 798
Cdd:pfam17380 519 EKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA-MEREREMMRQIVESEKAR 588
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
739-1006 |
1.39e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 739 RDHEREVENLENQLRAANMEHENQIQESKKRDAQ----VIADMEAQVHKLREEL---------INVNSHRKQQLVELGLL 805
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEeleaELEELEAELAELEAELeelrleleeLELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 806 REEEKQRAARDHETAVKKLKAESERVKMELKKTHA---------AETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQ 876
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEeleeleeelEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 877 TTISSLKEEssRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQ 956
Cdd:COG1196 376 EAEEELEEL--AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958657576 957 EYEtkfkglmpasLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR 1006
Cdd:COG1196 454 LEE----------EEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
453-811 |
1.40e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 453 QTQSTNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVN--DYEQNV-- 528
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNegDHLRNVqt 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 529 -----KLLKTKYDSDINILRQEhalstsktsvvIEELEQNIRQLKQQVQESELQRKQQVKDQEDKfHMEKNHLKYIYEEK 603
Cdd:pfam15921 549 ecealKLQMAEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-RLELQEFKILKDKK 616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 604 VHELKsELDKEKEDAQRKIHKFEEAlkeKEEQLGRVTEVQrlqaQQADAALEEFKrqvevTSEKVYSDMKEQMEKVEADL 683
Cdd:pfam15921 617 DAKIR-ELEARVSDLELEKVKLVNA---GSERLRAVKDIK----QERDQLLNEVK-----TSRNELNSLSEDYEVLKRNF 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 684 SRSKSLREKQSKEFLWQLEDARQRYEQQIVELK-LE----HEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANME 758
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKsMEgsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE 763
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958657576 759 hENQIQESKkrdaqviadmeaqvHKLREELINVNSHRKQQLVELGLLREEEKQ 811
Cdd:pfam15921 764 -KHFLKEEK--------------NKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
322-895 |
1.68e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.28 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 322 EKLKLQKKHDAEVQKILERKNNELEELKilyKKKQTETEETVRKLEKKVQILI--------RDCQVIRETKENQITE--- 390
Cdd:TIGR01612 1229 EKIDEEKKKSEHMIKAMEAYIEDLDEIK---EKSPEIENEMGIEMDIKAEMETfnishdddKDHHIISKKHDENISDire 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 391 --LKKICEQSTESLNNDWEKKLHSAVAEMekekfelQKHHTETIQELLEDTNV----RLSKMEG------DYMVQTQSTN 458
Cdd:TIGR01612 1306 ksLKIIEDFSEESDINDIKKELQKNLLDA-------QKHNSDINLYLNEIANIynilKLNKIKKiidevkEYTKEIEENN 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 459 HMIKDLEGRVQQLMgeaensnlqrqKLTQEKLELERCyqitcselqelktRQNLLHTEKEHLVNDYEQNVKLLKTkydsd 538
Cdd:TIGR01612 1379 KNIKDELDKSEKLI-----------KKIKDDINLEEC-------------KSKIESTLDDKDIDECIKKIKELKN----- 1429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 539 iNILRQEHALSTSKTSVviEELEQNIRQLKQQVQESELQRKQQVKDQEDK----FHMEKNHLKYiYEEKVHELKSELDKE 614
Cdd:TIGR01612 1430 -HILSEESNIDTYFKNA--DENNENVLLLFKNIEMADNKSQHILKIKKDNatndHDFNINELKE-HIDKSKGCKDEADKN 1505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 615 KEDAQRKIHKFEEALKEKEEQLGRVTEVqrlqaqqadaALEEFKRQVEVTSEKVYSDMKEQMEKV--EADLSRSKsLREK 692
Cdd:TIGR01612 1506 AKAIEKNKELFEQYKKDVTELLNKYSAL----------AIKNKFAKTKKDSEIIIKEIKDAHKKFilEAEKSEQK-IKEI 1574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 693 QSKEFLWQLEDARQ-RYEQQIVELKLEHEQEKTHLLQQHNAEKDSlvRDHEREVENLENQLRA-----------ANMEHE 760
Cdd:TIGR01612 1575 KKEKFRIEDDAAKNdKSNKAAIDIQLSLENFENKFLKISDIKKKI--NDCLKETESIEKKISSfsidsqdtelkENGDNL 1652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 761 NQIQ---ESKKRDAQVIADMEAQVHKLREEL----INVNSHRKQqlVELGLLRE-EEKQRAARDHETAVKKL-KAESERV 831
Cdd:TIGR01612 1653 NSLQeflESLKDQKKNIEDKKKELDELDSEIekieIDVDQHKKN--YEIGIIEKiKEIAIANKEEIESIKELiEPTIENL 1730
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958657576 832 KMELKKT--HAAETEMTLEKANSRLKQIEKEYTqklaKSSQIIAELQTTISslKEESSRQQLAAER 895
Cdd:TIGR01612 1731 ISSFNTNdlEGIDPNEKLEEYNTEIGDIYEEFI----ELYNIIAGCLETVS--KEPITYDEIKNTR 1790
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
300-1004 |
1.93e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 300 LSRMHEKELDMKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQV 379
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 380 iretkENQITELKKIcEQSTESLNNDWEKKLHSAVAEMEKEKFELQKHHTETIQElLEDTNVRLSKMEGDYMVQTQSTNH 459
Cdd:TIGR00606 268 -----DNEIKALKSR-KKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVRE-KERELVDCQRELEKLNKERRLLNQ 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 460 MIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQ--NLLHTEKE----------HLVNDYEQN 527
Cdd:TIGR00606 341 EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQikNFHTLVIErqedeaktaaQLCADLQSK 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 528 VKlLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHEL 607
Cdd:TIGR00606 421 ER-LKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 608 KSE---LDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFK----RQVEVTSEKVYSDMKEQMEKVE 680
Cdd:TIGR00606 500 KKEvksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKiksrHSDELTSLLGYFPNKKQLEDWL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 681 ADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHllqQHNAEKDSLVRDHEREVENLENQLraanmehe 760
Cdd:TIGR00606 580 HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY---EDKLFDVCGSQDEESDLERLKEEI-------- 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 761 nqiqESKKRDAQVIADMEAQVHKLREELINVNShRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHA 840
Cdd:TIGR00606 649 ----EKSSKQRAMLAGATAVYSQFITQLTDENQ-SCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 841 AETEM--TLEKANSRLKQIEKEYTQ---KLAKSSQIIAELQTTISslKEESSRQQLAAERRLQDVIQKFEDEKQQL---I 912
Cdd:TIGR00606 724 RRDEMlgLAPGRQSIIDLKEKEIPElrnKLQKVNRDIQRLKNDIE--EQETLLGTIMPEEESAKVCLTDVTIMERFqmeL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 913 RDNDQAIKALQDELETrSNQVRSAEKKLQHKElEAQEQMMYIRQEYETKFKglmpasLRQELEDTISSLKSQVNFLQKRA 992
Cdd:TIGR00606 802 KDVERKIAQQAAKLQG-SDLDRTVQQVNQEKQ-EKQHELDTVVSKIELNRK------LIQDQQEQIQHLKSKTNELKSEK 873
|
730
....*....|..
gi 1958657576 993 SILQEELTTYQS 1004
Cdd:TIGR00606 874 LQIGTNLQRRQQ 885
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
339-985 |
3.38e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.12 E-value: 3.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 339 ERKNNEL----EELK---------ILYKKKQtETEETVRKLEKKVQILIRDCQ----VIRETKENQITELKKICEQSTES 401
Cdd:TIGR01612 992 EAKNNELikyfNDLKanlgknkenMLYHQFD-EKEKATNDIEQKIEDANKNIPnieiAIHTSIYNIIDEIEKEIGKNIEL 1070
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 402 LNNDWEKKLHSAVAEMEKEKFELqKHHTetIQELLEDTNVR----LSKMEGDYMVQTQSTNHMIKDLEgrvqQLMGEAEN 477
Cdd:TIGR01612 1071 LNKEILEEAEINITNFNEIKEKL-KHYN--FDDFGKEENIKyadeINKIKDDIKNLDQKIDHHIKALE----EIKKKSEN 1143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 478 SnLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLK--TKYDSDINILRQEHALSTS---- 551
Cdd:TIGR01612 1144 Y-IDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNeiAEIEKDKTSLEEVKGINLSygkn 1222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 552 --------------KTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKED 617
Cdd:TIGR01612 1223 lgklflekideekkKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISD 1302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 618 AQRKIHKFEEALKEKEEQLGRVTEVQR--LQAQQADAALEEFKRQVEVTS--------EKVYSDMKEQMEKVE------- 680
Cdd:TIGR01612 1303 IREKSLKIIEDFSEESDINDIKKELQKnlLDAQKHNSDINLYLNEIANIYnilklnkiKKIIDEVKEYTKEIEennknik 1382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 681 ADLSRSKSLREKQSKEFlwQLEDARQRYE-----QQIVELKLEHEQEKTHLLQQHnAEKDSLVRDHEREVENLENQLRAA 755
Cdd:TIGR01612 1383 DELDKSEKLIKKIKDDI--NLEECKSKIEstlddKDIDECIKKIKELKNHILSEE-SNIDTYFKNADENNENVLLLFKNI 1459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 756 NMEHENQIQESKKRDAQVIADMEAQVHKLREELINVNSHR------KQQLVELGLLREEEKQRAA----RDHETAVK--- 822
Cdd:TIGR01612 1460 EMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKdeadknAKAIEKNKELFEQYKKDVTellnKYSALAIKnkf 1539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 823 -KLKAESERVKMELKKTHAAETeMTLEKANSRLKQIEKEY------TQKLAKSSQIIAELQTTISSLK---------EES 886
Cdd:TIGR01612 1540 aKTKKDSEIIIKEIKDAHKKFI-LEAEKSEQKIKEIKKEKfrieddAAKNDKSNKAAIDIQLSLENFEnkflkisdiKKK 1618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 887 SRQQLAAERRLQDVIQKFE-DEKQQLIRDNDQAIKALQDELETRSNQVRSAE-KKLQHKELEAQEQMMYI-----RQEYE 959
Cdd:TIGR01612 1619 INDCLKETESIEKKISSFSiDSQDTELKENGDNLNSLQEFLESLKDQKKNIEdKKKELDELDSEIEKIEIdvdqhKKNYE 1698
|
730 740 750
....*....|....*....|....*....|
gi 1958657576 960 T----KFKGLMPASlRQELEDTISSLKSQV 985
Cdd:TIGR01612 1699 IgiieKIKEIAIAN-KEEIESIKELIEPTI 1727
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
547-787 |
3.42e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 547 ALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYI--YEEKVHELKSEL---DKEKEDAQRK 621
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELaalEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 622 IHKFEEALKEKEEQLGRVTEVQRLQAQQADAAL-------EEFKRQVEVTSEkVYSDMKEQMEKVEADLSRSKSLREkqs 694
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALllspedfLDAVRRLQYLKY-LAPARREQAEELRADLAELAALRA--- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 695 keflwQLEDARQRYEQQIVELKLEHEQekthlLQQHNAEKDSLVRDHEREVENLENQLRaanmehenQIQESKKRDAQVI 774
Cdd:COG4942 168 -----ELEAERAELEALLAELEEERAA-----LEALKAERQKLLARLEKELAELAAELA--------ELQQEAEELEALI 229
|
250
....*....|...
gi 1958657576 775 ADMEAQVHKLREE 787
Cdd:COG4942 230 ARLEAEAAAAAER 242
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
391-1004 |
4.21e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 391 LKKICEQSTESLNNDWEKKLHSAVAEMEKEKFELQKHHTETIQELLEDTNVRLSKMEGDYMVQTQSTNHMIKDLEGRVQQ 470
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQ 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 471 LMgEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHL---------------VNDYEQNVKLLKTKY 535
Cdd:TIGR00618 238 TQ-QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInrarkaaplaahikaVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 536 DSDINILRQE--HALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQ--VKDQEDKFHMEKNHLKYIYEEKVHELKSE- 610
Cdd:TIGR00618 317 QSKMRSRAKLlmKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAtsIREISCQQHTLTQHIHTLQQQKTTLTQKLq 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 611 -LDKEKEDAQRKIHKFE-EALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKvysdMKEQMEKVEADLSRSKS 688
Cdd:TIGR00618 397 sLCKELDILQREQATIDtRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK----LEKIHLQESAQSLKERE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 689 LREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL---------------VRDHEREVENLENQL- 752
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpgpltrrmqrgeqtYAQLETSEEDVYHQLt 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 753 -----RAANMEHENQIQESKKRDAQVIADMEAQVHKLREELINV------NSHRKQQLVELGLLREEEKQRAARDHETAV 821
Cdd:TIGR00618 553 serkqRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLqdltekLSEAEDMLACEQHALLRKLQPEQDLQDVRL 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 822 KKLKAESErvkMELKKTHAAETEMTLEKANSRLKQIEKEyTQKLAKSSQIIAELQttisslKEESSRQQLAAERRLQDVI 901
Cdd:TIGR00618 633 HLQQCSQE---LALKLTALHALQLTLTQERVREHALSIR-VLPKELLASRQLALQ------KMQSEKEQLTYWKEMLAQC 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 902 QKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMPASLRQELEDT-ISS 980
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAeLSH 782
|
650 660
....*....|....*....|....
gi 1958657576 981 LKSQVNFLQKRASILQEELTTYQS 1004
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLKTLEA 806
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
552-951 |
4.87e-05 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 47.16 E-value: 4.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 552 KTSVVIEELEQNIRQLKQQVQESeLQRKQQVKDQEDKFHMEKNHLKYIYEEkvheLKSELDkekedAQRkiHKFEEALKE 631
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRE----LRKTLL-----ANR--FSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 632 KEEQLgrvtevqrlqaqqaDAALEEFKRQVEVTSE-------KVYSDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDA 704
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 705 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAAN---------MEHE----NQIQESKKRD 770
Cdd:pfam06160 217 KEGYREMEEEgYALEHLNVDKEIQQLEEQLEENLALLENLELDEAEEALEEIEeridqlydlLEKEvdakKYVEKNLPEI 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 771 AQVIADMEAQVHKLREELinvnshrkQQLVELGLLREEEKQRaARDHETAVKKLKAESERVKMELKKTHAAETEMT--LE 848
Cdd:pfam06160 297 EDYLEHAEEQNKELKEEL--------ERVQQSYTLNENELER-VRGLEKQLEELEKRYDEIVERLEEKEVAYSELQeeLE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 849 KANSRLKQIEKEytqklakssqiIAELQTTISSL-KEESSRQQLAAE--RRLQDVIQKFE--------DEKQQLIRDNDQ 917
Cdd:pfam06160 368 EILEQLEEIEEE-----------QEEFKESLQSLrKDELEAREKLDEfkLELREIKRLVEksnlpglpESYLDYFFDVSD 436
|
410 420 430
....*....|....*....|....*....|....
gi 1958657576 918 AIKALQDELetrsNQVRSAEKKLQHKELEAQEQM 951
Cdd:pfam06160 437 EIEDLADEL----NEVPLNMDEVNRLLDEAQDDV 466
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
736-942 |
5.54e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 5.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 736 SLVRDHEREVENLENQLRAANME---HENQIQESKKRDAQVIADMEAQVHKLREELINVnshrKQQLVELG-----LLRE 807
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQiktYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI----KAEIEELTdellnLVMD 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 808 EEKQRAA-RDHETAVKKLKAESERVKMELK-----------KTHAAETEMTLEKANSRLKQIEKEYTQ---KLAKSSQII 872
Cdd:PHA02562 250 IEDPSAAlNKLNTAAAKIKSKIEQFQKVIKmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKldtAIDELEEIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657576 873 AELQTTISSLKE-----ESSRQQLAAER----RLQDVIQKFEDEKQqlirDNDQAIKALQDELETRSNQVRSAEKKLQH 942
Cdd:PHA02562 330 DEFNEQSKKLLElknkiSTNKQSLITLVdkakKVKAAIEELQAEFV----DNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
305-753 |
6.26e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 6.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 305 EKELDMKTKMMEAKFSEekLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEeTVRKLEKKVQILIRDCQVIRETK 384
Cdd:TIGR00606 722 EKRRDEMLGLAPGRQSI--IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG-TIMPEEESAKVCLTDVTIMERFQ 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 385 ENQITELKKICEQSTESLNNDwekkLHSAVAEMEKEKFELQKHHTETIQELLEdtNVRLSKMEGDYMVQTQSTNHMIKDL 464
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSD----LDRTVQQVNQEKQEKQHELDTVVSKIEL--NRKLIQDQQEQIQHLKSKTNELKSE 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 465 EGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQ 544
Cdd:TIGR00606 873 KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 545 EHALSTSKTSVVIEELEqniRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHK 624
Cdd:TIGR00606 953 IHGYMKDIENKIQDGKD---DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENE 1029
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 625 FEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVeadLSRSKSLREKqskeflwQLEDA 704
Cdd:TIGR00606 1030 LKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI---KHFKKELREP-------QFRDA 1099
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1958657576 705 RQRYEQQIVELKLEHEQEKThLLQQHNAEKDSLVRDHEREVENLENQLR 753
Cdd:TIGR00606 1100 EEKYREMMIVMRTTELVNKD-LDIYYKTLDQAIMKFHSMKMEEINKIIR 1147
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
558-918 |
6.71e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.93 E-value: 6.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 558 EELEQNIRQLKQQVQESeLQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLG 637
Cdd:NF033838 61 KEVESHLEKILSEIQKS-LDKRKHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTSKTKKELDAAFEQFKKDTLEPGK 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 638 RVTEVQRLQA---QQADAALEEFKRQVEVTSEKVYsdmkeQMEKVEADLSRSKSLREkqskefLWQLEDARQRYEQQI-- 712
Cdd:NF033838 140 KVAEATKKVEeaeKKAKDQKEEDRRNYPTNTYKTL-----ELEIAESDVEVKKAELE------LVKEEAKEPRDEEKIkq 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 713 VELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQiQESKKRDAQVIADMEAQVHKLREELINVN 792
Cdd:NF033838 209 AKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQ-DKPKRRAKRGVLGEPATPDKKENDAKSSD 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 793 SHRKQQLVELGLLREEEK-QRAARDHETAVKKLKAESErvkmELKKTHAAETEMTLE----KANSRLKQIEKEYTQKLAK 867
Cdd:NF033838 288 SSVGEETLPSPSLKPEKKvAEAEKKVEEAKKKAKDQKE----EDRRNYPTNTYKTLEleiaESDVKVKEAELELVKEEAK 363
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1958657576 868 SS---QIIAELQTTISSLKEESSRQQlaaerRLQDVIQKFEDEKQQLIRDNDQA 918
Cdd:NF033838 364 EPrneEKIKQAKAKVESKKAEATRLE-----KIKTDRKKAEEEAKRKAAEEDKV 412
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
630-850 |
8.00e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.74 E-value: 8.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 630 KEKEEQLGRVTEVQRLQAQQADAALEEFKRQVevtsEKVYSDMKEQMEKVEAdlsrskslREKQSKeflwqlEDARQRYE 709
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE--------EEDKLL------EEAEKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 710 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQVHKLRE--E 787
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 788 LINVNSHRKQQL--------VELGLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKA 850
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
316-913 |
8.10e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 8.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 316 EAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEkKVQILIRDCQVIRETKENQITELKKIc 395
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE-KLEKEVKELEELKEEIEELEKELESL- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 396 EQSTESLNNDWeKKLHSAVAEMEKEKFELQKHHTEtIQEL--LEDTNVRLSKMEGDYMVQTQSTNHMIKDLEGR---VQQ 470
Cdd:PRK03918 251 EGSKRKLEEKI-RELEERIEELKKEIEELEEKVKE-LKELkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEingIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 471 LMGEAENSNLQRQKLTQEKLELERcyqitcsELQELKTRQNLLHTEKEhLVNDYEQNVKLLKTKYDSDINILRQEHALST 550
Cdd:PRK03918 329 RIKELEEKEERLEELKKKLKELEK-------RLEELEERHELYEEAKA-KKEELERLKKRLTGLTPEKLEKELEELEKAK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 551 SKTSVVIEELEQNIRQLKQQVQESELQ----RKQQVKDQEDKFHMEKNHLKYIYEEKVHELKsELDKEKEDAQRKIHKFE 626
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAieelKKAKGKCPVCGRELTEEHRKELLEEYTAELK-RIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 627 EALKEKEEQLGRVTEVQRL-----QAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKqskefLWQL 701
Cdd:PRK03918 480 KELRELEKVLKKESELIKLkelaeQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK-----LEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 702 EDARQRYEQQIVELklehEQEKTHLLQQHNAEKDSLVRDHEREVENLE----NQLRAANMEHENQIQESKkrdaqvIADM 777
Cdd:PRK03918 555 KKKLAELEKKLDEL----EEELAELLKELEELGFESVEELEERLKELEpfynEYLELKDAEKELEREEKE------LKKL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 778 EAQVHKLREELINVNS---HRKQQLVELGLLREEEKQRAARDHETavkKLKAESERVKMELK--KTHAAETEMTLEKANS 852
Cdd:PRK03918 625 EEELDKAFEELAETEKrleELRKELEELEKKYSEEEYEELREEYL---ELSRELAGLRAELEelEKRREEIKKTLEKLKE 701
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958657576 853 RLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEESSRQQLA-AERRLQDVIQKFEDEKQQLIR 913
Cdd:PRK03918 702 ELEEREKakKELEKLEKALERVEELREKVKKYKALLKERALSkVGEIASEIFEELTEGKYSGVR 765
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
601-941 |
8.98e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.49 E-value: 8.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 601 EEKVHELKSELDKEKEDAQRKIH--KFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVysdmKEQMEK 678
Cdd:COG5185 229 INIEEALKGFQDPESELEDLAQTsdKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKS 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 679 VEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHL---LQQHNAEKDSLVRDHEREvenlenqLRAA 755
Cdd:COG5185 305 IDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLtenLEAIKEEIENIVGEVELS-------KSSE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 756 NMEHENQIQESKKRDAQVIadMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMEL 835
Cdd:COG5185 378 ELDSFKDTIESTKESLDEI--PQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMR 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 836 KKThaaetEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKfedEKQQLIRDN 915
Cdd:COG5185 456 EAD-----EESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSK---LDQVAESLK 527
|
330 340
....*....|....*....|....*.
gi 1958657576 916 DQAIKALQDELETRSNQVRSAEKKLQ 941
Cdd:COG5185 528 DFMRARGYAHILALENLIPASELIQA 553
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
476-991 |
9.88e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 46.28 E-value: 9.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 476 ENSNLQRQKLTQEKLELE---RCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSK 552
Cdd:pfam07111 87 ETSLQQKMRLEAQAMELDalaVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSS 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 553 TSVVIEELEQN-----------IRQLKQQVQESELQRKQQVKDQED---KFHMEKNHLKYIYEEKVHELKSEldkEKEDA 618
Cdd:pfam07111 167 LTSKAEGLEKSlnsletkrageAKQLAEAQKEAELLRKQLSKTQEEleaQVTLVESLRKYVGEQVPPEVHSQ---TWELE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 619 QRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAAL----EEFKRQVEVT-------SEKVYSDMKEQMEKVEADLSRSK 687
Cdd:pfam07111 244 RQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLalqeEELTRKIQPSdslepefPKKCRSLLNRWREKVFALMVQLK 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 688 SlREKQSKEFLWQLEDarqryeqQIVELkleheQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHeNQIQESK 767
Cdd:pfam07111 324 A-QDLEHRDSVKQLRG-------QVAEL-----QEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMEL-SRAQEAR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 768 KRDAQVIADMEAQvhkLREELINVNShrKQQLVELGLLREEEkqraardhetAVKKLKAESERVKMELKKTHAAETEMTL 847
Cdd:pfam07111 390 RRQQQQTASAEEQ---LKFVVNAMSS--TQIWLETTMTRVEQ----------AVARIPSLSNRLSYAVRKVHTIKGLMAR 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 848 EKAnsrLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSR----QQLAAERRLQDV---IQKFEDEKQQLIRDNDQAIK 920
Cdd:pfam07111 455 KVA---LAQLRQESCPPPPPAPPVDADLSLELEQLREERNRldaeLQLSAHLIQQEVgraREQGEAERQQLSEVAQQLEQ 531
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 921 ALQDELETRSNQVRSAEKKLQHKElEAQEQMMYIRQEYeTKFKGLMPASLRQELEDTISSLKSQVNFLQKR 991
Cdd:pfam07111 532 ELQRAQESLASVGQQLEVARQGQQ-ESTEEAASLRQEL-TQQQEIYGQALQEKVAEVETRLREQLSDTKRR 600
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
566-948 |
1.36e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 45.90 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 566 QLKQQVQESELQRKQQVKDQEDKFHMEKNHLKyiyEEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLGRVTEVQrl 645
Cdd:pfam09731 88 QVKIPRQSGVSSEVAEEEKEATKDAAEAKAQL---PKSEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAH-- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 646 qAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEflwQLEDARQRYEQQIVELK-----LEHE 720
Cdd:pfam09731 163 -TDSLKEASDTAEISREKATDSALQKAEALAEKLKEVINLAKQSEEEAAPP---LLDAAPETPPKLPEHLDnveekVEKA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 721 QEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQiqeSKKRDAQVIADMEAQVHKLREELINvnshrkqqlv 800
Cdd:pfam09731 239 QSLAKLVDQYKELVASERIVFQQELVSIFPDIIPVLKEDNLL---SNDDLNSLIAHAHREIDQLSKKLAE---------- 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 801 elglLREEEKQRAARdhetAVKKLKAESERVKMELKKthAAETEMTLEKANSRLKQIEKEytQKLAKSSQiiaelqttiS 880
Cdd:pfam09731 306 ----LKKREEKHIER----ALEKQKEELDKLAEELSA--RLEEVRAADEAQLRLEFERER--EEIRESYE---------E 364
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657576 881 SLKEESSRQQLAAERRLQDVIqkfEDEKQQLIRDNDQAIK-ALQDELETRSNQVRSAEKKLqhKELEAQ 948
Cdd:pfam09731 365 KLRTELERQAEAHEEHLKDVL---VEQEIELQREFLQDIKeKVEEERAGRLLKLNELLANL--KGLEKA 428
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
467-909 |
1.59e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 467 RVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYE-QNVKLLKTKYDSDINILRQE 545
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 546 HAlstsktsvVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEkVHELKSELDKEKEDAQRKIHKF 625
Cdd:COG4717 155 LE--------ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE-LQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 626 EEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEK---VEADLSRSKSLREKQSKEFLWQLE 702
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 703 DARQRYEQQIVElklehEQEKTHLLQQHNAEKD---SLVRDHEREVENLENQLRAAN-MEHENQIQESKKRDAQVIADME 778
Cdd:COG4717 306 ELQALPALEELE-----EEELEELLAALGLPPDlspEELLELLDRIEELQELLREAEeLEEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 779 AQVHKLREELINVNSHRKQQLVEL----GLLREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKA--NS 852
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELeeleEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAelEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958657576 853 RLKQIEKEytQKLAKSSQIIAELQTTISSLKEESSRQQLAAErRLQDVIQKFEDEKQ 909
Cdd:COG4717 461 ELEQLEED--GELAELLQELEELKAELRELAEEWAALKLALE-LLEEAREEYREERL 514
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
323-941 |
1.66e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 323 KLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQITELKKiceqstesl 402
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNL--------- 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 403 nndwekklhsavaeMEKEKFELQKHHTETIQELLEDtNVRLSKMegdymvqtQSTNHMIKDLEGRVQQLMGEAENSNLQR 482
Cdd:TIGR04523 178 --------------LEKEKLNIQKNIDKIKNKLLKL-ELLLSNL--------KKKIQKNKSLESQISELKKQNNQLKDNI 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 483 QKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQ 562
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 563 NIRQLKQQVQESELQRKQ------QVKDQEDKFHMEKNHLKYIYEEKVHELK---SELDKEKEDAQRKIHKFEEaLKEKE 633
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQnnkiisQLNEQISQLKKELTNSESENSEKQRELEekqNEIEKLKKENQSYKQEIKN-LESQI 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 634 EQLGRVTEVQRLQAQQADAALEEFKRQVEVTsEKVYSDMKEQMEKVEA---DLSRSKSLREKQSKEflwqLEDARQRYEQ 710
Cdd:TIGR04523 394 NDLESKIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNNSeikDLTNQDSVKELIIKN----LDNTRESLET 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 711 QIVELKLEHEQEKTHLLQQhnaekdslvrdhEREVENLENQLraanmeheNQIQESKKRDAQVIADMEAQVHKLREELIN 790
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQK------------QKELKSKEKEL--------KKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 791 VNSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESERVKMELKkthaaETEMTLEKANSRLKQIEKEYTQKLAKSSQ 870
Cdd:TIGR04523 529 LESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELK-----QTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 871 IIAELQTTISSLKEESSRQQlAAERRLQDVIQKFEDEKQQLIrdndQAIKALQDELETRSNQVRSAEKKLQ 941
Cdd:TIGR04523 604 EIEEKEKKISSLEKELEKAK-KENEKLSSIIKNIKSKKNKLK----QEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
561-1002 |
2.19e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 561 EQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKY------IYEEKVHELKSELDKEK---EDAQRKIHKFEEALKE 631
Cdd:TIGR04523 35 EKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNsnnkikILEQQIKDLNDKLKKNKdkiNKLNSDLSKINSEIKN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 632 KEEQLGRV-TEVQRLQAQQADAALEEFKRQVEVTSEkvysdmKEQMEKVEADLSRSKSLREkQSKEFLWQLEDARQRYEQ 710
Cdd:TIGR04523 115 DKEQKNKLeVELNKLEKQKKENKKNIDKFLTEIKKK------EKELEKLNNKYNDLKKQKE-ELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 711 QIVELKLEHEQEKTHL--LQQHNAEKDSLvrdhEREVENLENQlraanmehENQIQESKKRDAQVIADMEAQVHKLREEL 788
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnLKKKIQKNKSL----ESQISELKKQ--------NNQLKDNIEKKQQEINEKTTEISNTQTQL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 789 INVNSHRKQQLVELgllreEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQ---KL 865
Cdd:TIGR04523 256 NQLKDEQNKIKKQL-----SEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEiqnQI 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 866 AKSSQIIAELQTTISSLKEESSRQQLAAErRLQDVIQKFEDEKQQLIRDNDQAIKALQDeLETRSNQVRSAEKKLQHKEL 945
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENS-EKQRELEEKQNEIEKLKKENQSYKQEIKN-LESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958657576 946 EAQEQMMYIRQEYETKFK--------GLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTY 1002
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKeierlketIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL 473
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
345-941 |
2.98e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.73 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 345 LEELKILYKKKQTETEETVRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESlnndwekklhsavAEMEKEKFEL 424
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEA-------------EEALREQAEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 425 QKHHTETIQElledtnvrLSKMEGDYMVQTQSTNHMIKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERcyqitcsELQ 504
Cdd:pfam05557 78 NRLKKKYLEA--------LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQE-------RLD 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 505 ELKTRqnllHTEKEHLVNDYEQNVKLLKTKyDSDINILRQEHALSTSKTSVVieeleQNIRQlkQQVQESELQRKQQVKD 584
Cdd:pfam05557 143 LLKAK----ASEAEQLRQNLEKQQSSLAEA-EQRIKELEFEIQSQEQDSEIV-----KNSKS--ELARIPELEKELERLR 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 585 QEDKFHMEKNHLKYIYEEKVHELKSELDKEkEDAQRKIHKFEealKEKEEQLGRVTEVQRLqAQQADAALeefkRQVEVT 664
Cdd:pfam05557 211 EHNKHLNENIENKLLLKEEVEDLKRKLERE-EKYREEAATLE---LEKEKLEQELQSWVKL-AQDTGLNL----RSPEDL 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 665 SEKVysdmkEQMEKVEADLSRSKSLREKQSKeflwQLEDARQRYEQQIVELKLEHEQEKTHLLQQHN----AEKDSLVRD 740
Cdd:pfam05557 282 SRRI-----EQLQQREIVLKEENSSLTSSAR----QLEKARRELEQELAQYLKKIEDLNKKLKRHKAlvrrLQRRVLLLT 352
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 741 HERE-----VENLENQLraANMEHENQIQESKKRDAQVI-------ADMEAQVHKLREELINVNSHRKQQLVELGLLREE 808
Cdd:pfam05557 353 KERDgyraiLESYDKEL--TMSNYSPQLLERIEEAEDMTqkmqahnEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQ 430
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 809 EKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSRLKQiekEYTQKLAKssqiIAELQTTISSLKEESSR 888
Cdd:pfam05557 431 ESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQG---DYDPKKTK----VLHLSMNPAAEAYQQRK 503
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958657576 889 QQLAAER----RLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRSAEKKLQ 941
Cdd:pfam05557 504 NQLEKLQaeieRLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQ 560
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
703-950 |
3.65e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 703 DARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREVENLENQLRAANME---HENQIQESKKRDAQVIADM 777
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLkqLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 778 EAQVHKLREELINVNSHRKQQLVELgLLREEEKQRAARdhetAVKKLKAESERVKMELKkthaaetemTLEKANSRLKQI 857
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLAL-LLSPEDFLDAVR----RLQYLKYLAPARREQAE---------ELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 858 EKEYTQKLAKSSQIIAELQTtisslkeesSRQQLAAERrlqdviqkfeDEKQQLIRDNDQAIKALQDELETRSNQVRSAE 937
Cdd:COG4942 166 RAELEAERAELEALLAELEE---------ERAALEALK----------AERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|...
gi 1958657576 938 KKLQHKELEAQEQ 950
Cdd:COG4942 227 ALIARLEAEAAAA 239
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
556-1005 |
3.76e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 556 VIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEK---NHLKYIYEEKVHELKSELDKEKEDAQRKIHKF---EEAL 629
Cdd:TIGR00618 223 VLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQllkQLRARIEELRAQEAVLEETQERINRARKAAPLaahIKAV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 630 KEKEEQLGRVTevQRLQAQQADAALEEFKRQVEVTSEkvySDMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYE 709
Cdd:TIGR00618 303 TQIEQQAQRIH--TELQSKMRSRAKLLMKRAAHVKQQ---SSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 710 QQIVelkLEHEQEKTHLLQQHNAEKdSLVRDHEREVENLENQLRAANMEH------ENQIQESKKRDA--QVIADMEAQV 781
Cdd:TIGR00618 378 TQHI---HTLQQQKTTLTQKLQSLC-KELDILQREQATIDTRTSAFRDLQgqlahaKKQQELQQRYAElcAAAITCTAQC 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 782 HKLREELINVNSHRKQQLVELGLLREEEKQRAARDH--ETAVKKLKAESER-VKMELKKTHAAETEMTLEKAN-SRLKQI 857
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKavVLARLLELQEEPCpLCGSCIHPNPARQDIDNPGPLtRRMQRG 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 858 EKEYT---QKLAKSSQIIAELQTTISSLKEESSR---------QQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQDE 925
Cdd:TIGR00618 534 EQTYAqleTSEEDVYHQLTSERKQRASLKEQMQEiqqsfsiltQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 926 LETrsnQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMPASLRQElEDTISSLKSQVNFLQKRASIlQEELTTYQSR 1005
Cdd:TIGR00618 614 QHA---LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE-RVREHALSIRVLPKELLASR-QLALQKMQSE 688
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
557-788 |
4.30e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 557 IEELEQNIRQLKQQVQ-----ESELQRKQQVKDQEDKFHMEKNHLK-YIYEEKVHELKSELDKEKEDAQRKIHKFEEALK 630
Cdd:COG4913 237 LERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 631 EKEEQLGRVTEVQRLQAQQADAALEEFKRQVEvtsekvysDMKEQMEKVEADLSRskslREKQSKEFLWQLEDARQRYEQ 710
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQLEREIE--------RLERELEERERRRAR----LEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958657576 711 QIVELKLEHEQEKTHLLQQHNAekdslVRDHEREVENLENQLRAAnmehENQIQESKKRDaqviADMEAQVHKLREEL 788
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEA-----LAEAEAALRDLRRELREL----EAEIASLERRK----SNIPARLLALRDAL 449
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
461-999 |
6.31e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 6.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 461 IKDLEGRVQQLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDIN 540
Cdd:pfam02463 179 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 541 IL----------RQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQE-DKFHMEKNHLKYIYEEKVHELKS 609
Cdd:pfam02463 259 EIekeeeklaqvLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEkLKESEKEKKKAEKELKKEKEEIE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 610 ELDKEKEDAQRKIHKFEEALKEKEEQlgrvtevQRLQAQQADAALEEFKRQVEVTSEKVySDMKEQMEKVEADLSRSKSL 689
Cdd:pfam02463 339 ELEKELKELEIKREAEEEEEEELEKL-------QEKLEQLEEELLAKKKLESERLSSAA-KLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 690 REKQSKEFLWQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKR 769
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 770 DAQVIADMEAQVHKLREELiNVNSHRKQQLVELGLLREEEKQRAARDHETAVKKLK-----AESERVKMELKKTHAAETE 844
Cdd:pfam02463 491 SRQKLEERSQKESKARSGL-KVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIstaviVEVSATADEVEERQKLVRA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 845 MTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEEssRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQD 924
Cdd:pfam02463 570 LTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK--ATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958657576 925 ELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEEL 999
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
557-780 |
6.32e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 6.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 557 IEELEQNIRQLKQQVQESELQRKQQVKDQEDKfhmeknhlkyiyEEKVHELKSELD---KEKEDAQRKIHKFEEALKEKE 633
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEEL------------NEEYNELQAELEalqAEIDKLQAEIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 634 EQLGrvtevQRLQAQQADAA-------------LEEFKRQVEVTSeKVYSDMKEQMEKVEADLsrsKSLREKQSkeflwQ 700
Cdd:COG3883 86 EELG-----ERARALYRSGGsvsyldvllgsesFSDFLDRLSALS-KIADADADLLEELKADK---AELEAKKA-----E 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 701 LEDARQRYEQQIVELKLEHEQekthlLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEAQ 780
Cdd:COG3883 152 LEAKLAELEALKAELEAAKAE-----LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
847-1005 |
6.64e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 847 LEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLK-EESSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQAIKALQD- 924
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 925 ---ELETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETkfkglMPASLRQELEDTISSLKSQVNFLQKRASILQEELTT 1001
Cdd:COG3206 264 viqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-----LRAQLQQEAQRILASLEAELEALQAREASLQAQLAQ 338
|
....
gi 1958657576 1002 YQSR 1005
Cdd:COG3206 339 LEAR 342
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
481-765 |
7.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 481 QRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHL-----VNDYEQNVKLLKTKYDSdiniLRQEHAlSTSKTSV 555
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrlaeYSWDEIDVASAEREIAE----LEAELE-RLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 556 VIEELEQNIRQLKQQVQESELQRKQQVKDQedkfhmeknhlkyiyeekvhelkSELDKEKEDAQRKIHKFEEALkEKEEQ 635
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEI-----------------------GRLEKELEQAEEELDELQDRL-EAAED 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 636 LGRVTEVQRLQAQQADAALEEFKRQVevtsekvysdmkeqMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVEL 715
Cdd:COG4913 742 LARLELRALLEERFAAALGDAVEREL--------------RENLEERIDALRARLNRAEEELERAMRAFNREWPAETADL 807
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 716 -----------KLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQE 765
Cdd:COG4913 808 dadleslpeylALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
333-933 |
7.42e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 7.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 333 EVQKILERKN------NELEELKILYKKKqtetEETVRKLEKKVQILIrdcqvIRETKENQITELKKICEQSTESLNNDW 406
Cdd:TIGR01612 390 EIKKIAKQRAiffynaKKLKHLEILYKHQ----EDILNNFHKTIERLI-----FEKPDPNNNNIFKDDFDEFNKPIPKSK 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 407 EKKLHSAVAEMEKEKFELQKHHTETIQELLEDTNVRL------------SKMEGDYMVQTQSTNHMIKDLEGRVQQLM-G 473
Cdd:TIGR01612 461 LKALEKRFFEIFEEEWGSYDIKKDIDENSKQDNTVKLilmrmkdfkdiiDFMELYKPDEVPSKNIIGFDIDQNIKAKLyK 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 474 EAENSNLQRQKLTQ--EKLELErcyqiTCSELQELKTRQNLLHTEKEHLVNDY----EQNVKLLKTKYDSDINILRQEHA 547
Cdd:TIGR01612 541 EIEAGLKESYELAKnwKKLIHE-----IKKELEEENEDSIHLEKEIKDLFDKYleidDEIIYINKLKLELKEKIKNISDK 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 548 LSTSKTSVVIEEL-EQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSEL-------------DK 613
Cdd:TIGR01612 616 NEYIKKAIDLKKIiENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSELSKIYEDDIDALYNELssivkenaidnteDK 695
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 614 EK-EDAQRKIHKFEEALK----------------EKEEQLGRVTEVQRL----QAQQADAALEEFKRQVEVTSEKV--YS 670
Cdd:TIGR01612 696 AKlDDLKSKIDKEYDKIQnmetatvelhlsnienKKNELLDIIVEIKKHihgeINKDLNKILEDFKNKEKELSNKIndYA 775
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 671 DMKEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKL--EHEQEKTHLLQQHNAEKDSLVRDHEREVeNL 748
Cdd:TIGR01612 776 KEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTisIKEDEIFKIINEMKFMKDDFLNKVDKFI-NF 854
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 749 ENQLRA-ANMEHENQIQESKKRDAQV----IADMEAQVHKLREELINVNSHRKQQLVELGLLRE-EEKQRAARDHETAVK 822
Cdd:TIGR01612 855 ENNCKEkIDSEHEQFAELTNKIKAEIsddkLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKvDEYIKICENTKESIE 934
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 823 KLKAESERVKMELKKTHAaetemTLEKANSrlkqIEKEYTQKLAKS-SQIIAELQTTISSLKEESSrqqlaaERRLQDVI 901
Cdd:TIGR01612 935 KFHNKQNILKEILNKNID-----TIKESNL----IEKSYKDKFDNTlIDKINELDKAFKDASLNDY------EAKNNELI 999
|
650 660 670
....*....|....*....|....*....|..
gi 1958657576 902 QKFEDEKQQLIRDNDQAIKALQDELETRSNQV 933
Cdd:TIGR01612 1000 KYFNDLKANLGKNKENMLYHQFDEKEKATNDI 1031
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
557-941 |
7.99e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 7.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 557 IEELEQNIRQLKQQVQESElQRKQQVKDQEDKFH-MEKNHLkyiyEEKVHELKSELDkEKEDAQRKIHKFEEALKEKEEQ 635
Cdd:PRK04863 853 LADHESQEQQQRSQLEQAK-EGLSALNRLLPRLNlLADETL----ADRVEEIREQLD-EAEEAKRFVQQHGNALAQLEPI 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 636 LGRVTEVQ------RLQAQQADAALEEFKRQVEVTSEKV-------YSD--------------MKEQMEKVEADLSRSK- 687
Cdd:PRK04863 927 VSVLQSDPeqfeqlKQDYQQAQQTQRDAKQQAFALTEVVqrrahfsYEDaaemlaknsdlnekLRQRLEQAEQERTRARe 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 688 SLREKQSK-----EFLWQLEDARQRYEQQIVELKLEheqekthlLQQHNAEKDslvrdherevENLENQLRAANMEHENQ 762
Cdd:PRK04863 1007 QLRQAQAQlaqynQVLASLKSSYDAKRQMLQELKQE--------LQDLGVPAD----------SGAEERARARRDELHAR 1068
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 763 IQESKKRDAQViadmEAQVHKLREELINVNSHRKQQLVELGLLREEEKQ---------RAARDHETAvKKLKAEservkm 833
Cdd:PRK04863 1069 LSANRSRRNQL----EKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNakagwcavlRLVKDNGVE-RRLHRR------ 1137
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 834 ELKKTHAAETEMTLEKANSRLKqiekeytqkLAKSSqiiAELQTTISSLKEESSRqqlaAERRLQ---DVIQKFEDE-KQ 909
Cdd:PRK04863 1138 ELAYLSADELRSMSDKALGALR---------LAVAD---NEHLRDVLRLSEDPKR----PERKVQfyiAVYQHLRERiRQ 1201
|
410 420 430
....*....|....*....|....*....|....
gi 1958657576 910 QLIRDND--QAIKALQDELETRSNQVRSAEKKLQ 941
Cdd:PRK04863 1202 DIIRTDDpvEAIEQMEIELSRLTEELTSREQKLA 1235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
771-999 |
8.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 771 AQVIADMEAQVHKLREELINVNSHRKQQLVElgllrEEEKQRAARDHETAVKKLKAESERVKMELkkthaAETEMTLEKA 850
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKE-----EKALLKQLAALERRIAALARRIRALEQEL-----AALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 851 NSRLKQIEKEYTQKLAKSSQIIAELQTT--ISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIrdndQAIKALQDELET 928
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA----EELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 929 RSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKfkglmpASLRQELEDTISSLKSQVNFLQKRASILQEEL 999
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAER------QKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
542-754 |
9.42e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 9.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 542 LRQEHALSTSKTSVVIEELEQNIRQLKQQVQESElQRKQQVKDQEDKFHMEKNHLkyIYEEKVHELKSELDK---EKEDA 618
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNGLVDLSEEAK--LLLQQLSELESQLAEaraELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 619 QRKIHKFEEALKEKEEQLGRVTEVQRLqaQQADAALEEFKRQVEVTSEKvYSDMKEQMEKVEADLSRSKSLREKQSKEFL 698
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVI--QQLRAQLAELEAELAELSAR-YTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958657576 699 WQLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREVENLENQLRA 754
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPELEAE--LRRLEREVEVARELYES 369
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
558-941 |
1.11e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 558 EELEQNIRQLKQQVQESELQRKQQVKDQEDkfHMEKNhlkyiyeEKVHELKSELDKEKEDAQRKIHKFEEALKEKEEQLg 637
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADD--LEERA-------EELREEAAELESELEEAREAVEDRREEIEELEEEI- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 638 rvtEVQRLQAQQADAALEEFK-RQVEVTSEKvySDMKEQMEKVEADLsrsKSLREKqskeflwqLEDARQRYEQ------ 710
Cdd:PRK02224 394 ---EELRERFGDAPVDLGNAEdFLEELREER--DELREREAELEATL---RTARER--------VEEAEALLEAgkcpec 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 711 -QIVElkleheqEKTHLlqQHNAEKDSLVRDHEREVENLENQLRAANMEHENqiqeskkrdAQVIADMEAQVHKLREELI 789
Cdd:PRK02224 458 gQPVE-------GSPHV--ETIEEDRERVEELEAELEDLEEEVEEVEERLER---------AEDLVEAEDRIERLEERRE 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 790 NVNSHRKQQ--LVELGLLREEEKQRAARDHETavkklKAESERVKMELKKTHAAETEMTLEKANSRLKQI--EKEYTQKL 865
Cdd:PRK02224 520 DLEELIAERreTIEEKRERAEELRERAAELEA-----EAEEKREAAAEAEEEAEEAREEVAELNSKLAELkeRIESLERI 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 866 AKSSQIIAELQTTISSLKE---------ESSRQQLAAER-RLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSNQVRS 935
Cdd:PRK02224 595 RTLLAAIADAEDEIERLREkrealaelnDERRERLAEKReRKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE 674
|
....*.
gi 1958657576 936 AEKKLQ 941
Cdd:PRK02224 675 ERDDLQ 680
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
761-1000 |
1.20e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.64 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 761 NQIQESKKRDAQVIADMEAQVHKLREELinvnSHRKQQLVELGLLREEEKQRAARDHETAVKKLKAESE----RVKMELK 836
Cdd:COG5185 271 GENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETEtgiqNLTAEIE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 837 KTHAAETEmTLEKANSRLKQIEKEYtqKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRDND 916
Cdd:COG5185 347 QGQESLTE-NLEAIKEEIENIVGEV--ELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 917 Q---AIKALQDELETRSNQVRSAEKKLQHKELEAQEQMMyIRQEYETKFKGLMPASLRQELEDTISSLKSQVNFLQKRAS 993
Cdd:COG5185 424 ElqrQIEQATSSNEEVSKLLNELISELNKVMREADEESQ-SRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLE 502
|
....*..
gi 1958657576 994 ILQEELT 1000
Cdd:COG5185 503 KLRAKLE 509
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
742-951 |
1.47e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 742 EREVENLENQLRAANMEHE-NQIQESKKRDAQVIADMEAQVHKLREELINVNShRKQQLVELGLLREEEKQRAARDheTA 820
Cdd:COG3206 188 RKELEEAEAALEEFRQKNGlVDLSEEAKLLLQQLSELESQLAEARAELAEAEA-RLAALRAQLGSGPDALPELLQS--PV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 821 VKKLKAESERVKMELkkthaAETEMTLEKANSRLKQIEKEYtqklaksSQIIAELQTTISSLKEESSRQQLAAERRLQDV 900
Cdd:COG3206 265 IQQLRAQLAELEAEL-----AELSARYTPNHPDVIALRAQI-------AALRAQLQQEAQRILASLEAELEALQAREASL 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958657576 901 IQKFEDEKQQLIRDNDQAIK--ALQDELETRSNQVRSAEKKLQhkELEAQEQM 951
Cdd:COG3206 333 QAQLAQLEARLAELPELEAElrRLEREVEVARELYESLLQRLE--EARLAEAL 383
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
617-790 |
1.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 617 DAQRKIHKFEEALKEKEEQLGRVTE-VQRLQAQQA--DAALEEFKRQVEVTSEKV--------YSDMKEQMEKVEADLSR 685
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEErLEALEAELDalQERREALQRLAEYSWDEIdvasaereIAELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 686 SKSLREKQSkeflwQLEDARQRYEQQIVELKLE---HEQEKTHLLQQHNAEKDSLVRDHEREV----ENLENQLRAANME 758
Cdd:COG4913 687 LAALEEQLE-----ELEAELEELEEELDELKGEigrLEKELEQAEEELDELQDRLEAAEDLARlelrALLEERFAAALGD 761
|
170 180 190
....*....|....*....|....*....|...
gi 1958657576 759 -HENQIQESKKRDaqvIADMEAQVHKLREELIN 790
Cdd:COG4913 762 aVERELRENLEER---IDALRARLNRAEEELER 791
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
458-997 |
1.71e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 458 NHMIKDLEGRVQQLMGEAENsNLQ---RQKLTQEKLELERCYQITCSELQE-LKTRQNLlhteKEHLvndYEQNVKLLKT 533
Cdd:COG5022 730 AGVLAALEDMRDAKLDNIAT-RIQraiRGRYLRRRYLQALKRIKKIQVIQHgFRLRRLV----DYEL---KWRLFIKLQP 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 534 KYDSDINILRQEHALSTsktsvvIEELEQNIRQLKQQVQESElqrkqqvkdQEDKFHMEKNHLKYIYEEKVHELKSELDK 613
Cdd:COG5022 802 LLSLLGSRKEYRSYLAC------IIKLQKTIKREKKLRETEE---------VEFSLKAEVLIQKFGRSLKAKKRFSLLKK 866
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 614 EK--EDAQRKIHKFEEALKEKEEQLGRVTEVqRLQAQQADAALEEFKRQVEvTSEKVYSDMKEQMEKVEADLSRSKSLRE 691
Cdd:COG5022 867 ETiyLQSAQRVELAERQLQELKIDVKSISSL-KLVNLELESEIIELKKSLS-SDLIENLEFKTELIARLKKLLNNIDLEE 944
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 692 KQSKEflwqledarqrYEQQIVELKLeHEQEKThlLQQHNAEKDSLVRDHEreveNLENQLRAANMEHENQIQESKKRDA 771
Cdd:COG5022 945 GPSIE-----------YVKLPELNKL-HEVESK--LKETSEEYEDLLKKST----ILVREGNKANSELKNFKKELAELSK 1006
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 772 QVIAdMEAQVHKLREEliNVNSHRKQQLVELGLLREEEKQRaardhETAVKKLKAESERVKMELKKTHAAeteMTLEKAN 851
Cdd:COG5022 1007 QYGA-LQESTKQLKEL--PVEVAELQSASKIISSESTELSI-----LKPLQKLKGLLLLENNQLQARYKA---LKLRREN 1075
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 852 SRLKQIEKEYTQK---LAKSSQIIAELQTTISSLKEESSRQQLAAER---RLQDVIQKFEDEKQQLIRDNDQAIKALQDE 925
Cdd:COG5022 1076 SLLDDKQLYQLEStenLLKTINVKDLEVTNRNLVKPANVLQFIVAQMiklNLLQEISKFLSQLVNTLEPVFQKLSVLQLE 1155
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958657576 926 LETRSNQVRSAEKKLQHKELEAQEQMMYIRQEYETKFKGLmpASLRQELEDTISSLKSQVNFLQKRASILQE 997
Cdd:COG5022 1156 LDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLS--SSEVNDLKNELIALFSKIFSGWPRGDKLKK 1225
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
522-963 |
1.95e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 522 NDYEQNVKLLKTKYDSDINILRQEhalsTSKTSVVIEELEQNIRQLKQQVQES----ELQRKQQVKDQEDKFHMEKNHLK 597
Cdd:PTZ00121 1079 FDFDAKEDNRADEATEEAFGKAEE----AKKTETGKAEEARKAEEAKKKAEDArkaeEARKAEDARKAEEARKAEDAKRV 1154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 598 YIYEEKVHELKSELDKEKEDAQRkihkFEEAlkEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQME 677
Cdd:PTZ00121 1155 EIARKAEDARKAEEARKAEDAKK----AEAA--RKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 678 KVEADLSRSKSLREKQSKEflwqledarqryEQQIVELKLEHEQEKTHLLQQHNAEKDSLVR--DHEREVENLENQLRAA 755
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEE------------ERNNEEIRKFEEARMAHFARRQAAIKAEEARkaDELKKAEEKKKADEAK 1296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 756 NMEHENQIQESKKRdaqviadmeAQVHKLREELINVNSHRKQQLVELGLLREEEKQR---AARDHETAVKKLKAESERVK 832
Cdd:PTZ00121 1297 KAEEKKKADEAKKK---------AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaeaAKAEAEAAADEAEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 833 MELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQ--- 909
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKkad 1447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958657576 910 QLIRDNDQAIKALQ-----------DELETRSNQVRSAEkKLQHKELEAQEQMMYIRQEYETKFK 963
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEakkkaeeakkaDEAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKK 1511
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
407-966 |
2.04e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 407 EKKLHSAVAEMEKEKFELQKHHTETIQELLEDTNVRLSKMEGDYmvqtQSTNHMIKDLEGRVQQLmgeaENSNLQRQKLT 486
Cdd:pfam12128 274 IASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAV----AKDRSELEALEDQHGAF----LDADIETAAAD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 487 QEKLELERcyqitcSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQ 566
Cdd:pfam12128 346 QEQLPSWQ------SELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 567 LKQQVQESELQRKQQVKDQEDKFHMEKNHLKY----------------IYEEKVHELKSELD---KEKEDAQRKIHKFEE 627
Cdd:pfam12128 420 LESELREQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpelllqleNFDERIERAREEQEaanAEVERLQSELRQARK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 628 ALKEKEEQLGRvtEVQRLQAQQadAALEEFKRQVEVTS-------EKVYSDMKEQMEKV--EADLSRSK----------- 687
Cdd:pfam12128 500 RRDQASEALRQ--ASRRLEERQ--SALDELELQLFPQAgtllhflRKEAPDWEQSIGKVisPELLHRTDldpevwdgsvg 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 688 ----------SLREKQSKEFLWQLEDARQRYEQQIVELKLEHE--QEKTHLLQQHNAEKDSLVRDHEREVENLEN---QL 752
Cdd:pfam12128 576 gelnlygvklDLKRIDVPEWAASEEELRERLDKAEEALQSAREkqAAAEEQLVQANGELEKASREETFARTALKNarlDL 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 753 RAANMEHEN-------QIQESKKRDAQVIADMEAQVHKLREELINVNSHRKQQLVELGLLREEEKQraardheTAVKKLK 825
Cdd:pfam12128 656 RRLFDEKQSekdkknkALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQ-------VVEGALD 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 826 AESERVKMELKKTHAAetemtlekANSRLKQIEKEYTQKLAK---SSQIIAELQTTISSL--KEESSRQQLAAERRLQDV 900
Cdd:pfam12128 729 AQLALLKAAIAARRSG--------AKAELKALETWYKRDLASlgvDPDVIAKLKREIRTLerKIERIAVRRQEVLRYFDW 800
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 901 IQ-KFEDEKQQL---IRDNDQAIKALQDELETRSNQVRSAEKKLQhKELEAQEQMMYIRQEYETKFKGLM 966
Cdd:pfam12128 801 YQeTWLQRRPRLatqLSNIERAISELQQQLARLIADTKLRRAKLE-MERKASEKQQVRLSENLRGLRCEM 869
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
519-891 |
2.37e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 519 HLVNDYEQNVKLLKTKYDSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKY 598
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKN 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 599 IY---EEKVHELKsELDK---EKEDAQRKIHKFEEALKEKEEQLGRVTEVQrLQAQQADAALEEFKRqvEVTSEKVYSDM 672
Cdd:PLN02939 144 ILllnQARLQALE-DLEKiltEKEALQGKINILEMRLSETDARIKLAAQEK-IHVEILEEQLEKLRN--ELLIRGATEGL 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 673 KEQMEKVEADLSRSKSLREKQSKEFLWQLEDARQRYEQQIVELKLEH--------EQEKTHLLQQHNAEK-DSLVRDHER 743
Cdd:PLN02939 220 CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERslldaslrELESKFIVAQEDVSKlSPLQYDCWW 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 744 E-VENLENQLRAANMEHENQIQESKKRDaqviaDMEAQVHKLREELinvnshrkqqlvelgllreeekqraardHETAVK 822
Cdd:PLN02939 300 EkVENLQDLLDRATNQVEKAALVLDQNQ-----DLRDKVDKLEASL----------------------------KEANVS 346
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958657576 823 KLkaESERVKMELKKTHAAEtemtlekanSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQL 891
Cdd:PLN02939 347 KF--SSYKVELLQQKLKLLE---------ERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSL 404
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
558-896 |
2.42e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 558 EELEQNIRQLKQQVQESE--LQRKQQVKDQEDKFHMEKNHLKYIYE--EKVHELKSELDKEKEDAQRKIHKFEEALKEKE 633
Cdd:COG3096 316 EELSARESDLEQDYQAASdhLNLVQTALRQQEKIERYQEDLEELTErlEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLK 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 634 EQLG---RVTEVQR---LQAQQADAALEEFKRQV---EVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSKEflwqlEDA 704
Cdd:COG3096 396 SQLAdyqQALDVQQtraIQYQQAVQALEKARALCglpDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVA-----DAA 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 705 RQRYEQ--QIVELKLEH-----------EQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRAAnmehENQIQESKKRDA 771
Cdd:COG3096 471 RRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIG 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 772 QVIADMEaQVHKLREELinvnshrKQQLVELGLLREEEKQRAARdhetavkkLKAESERVKMELKKThaAETEMTLEKAN 851
Cdd:COG3096 547 QQLDAAE-ELEELLAEL-------EAQLEELEEQAAEAVEQRSE--------LRQQLEQLRARIKEL--AARAPAWLAAQ 608
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1958657576 852 SRLKQIEKEYTQKLAKSSQIIAELQTTISSLKE-ESSRQQLAAERR 896
Cdd:COG3096 609 DALERLREQSGEALADSQEVTAAMQQLLEREREaTVERDELAARKQ 654
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
474-946 |
4.59e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 474 EAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQNVKLLKTKydsdiNILRQEHALSTSKT 553
Cdd:PRK01156 191 KLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-----NRYESEIKTAESDL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 554 SVVIEELEQnIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYiYEEKVHELKSELDKeKEDAQRKIHKFEEALKEKE 633
Cdd:PRK01156 266 SMELEKNNY-YKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINK-YHAIIKKLSVLQKDYNDYI 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 634 EQLGRVTEV--QRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQmEKVEADLSRSKSLREKQSKEFLWQLEDAR---QRY 708
Cdd:PRK01156 343 KKKSRYDDLnnQILELEGYEMDYNSYLKSIESLKKKIEEYSKNI-ERMSAFISEILKIQEIDPDAIKKELNEINvklQDI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 709 EQQIVELkleheqekthllqqhNAEKDSLvRDHEREVENLENQLRAANM----------EHENQIQESKKRDAQVIadmE 778
Cdd:PRK01156 422 SSKVSSL---------------NQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttlgeEKSNHIINHYNEKKSRL---E 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 779 AQVHKLREELINVNSHRKQQLVELGLLREEEkqraARDHETAVKKLK-AESERVKMELKKTHAAETEMTLEKANSRLKQI 857
Cdd:PRK01156 483 EKIREIEIEVKDIDEKIVDLKKRKEYLESEE----INKSINEYNKIEsARADLEDIKIKINELKDKHDKYEEIKNRYKSL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 858 -----EKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQlirdNDQAIKALQDELETRSNQ 932
Cdd:PRK01156 559 kledlDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEANNLNNK 634
|
490
....*....|....*
gi 1958657576 933 VRSA-EKKLQHKELE 946
Cdd:PRK01156 635 YNEIqENKILIEKLR 649
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
808-1006 |
4.76e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 808 EEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEM-TLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEES 886
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 887 SRQQLAAERRLQdVIQKFE-----------DEKQQLIRdNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQmmyiR 955
Cdd:COG4942 100 EAQKEELAELLR-ALYRLGrqpplalllspEDFLDAVR-RLQYLKYLAPARREQAEELRADLAELAALRAELEAE----R 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 956 QEYETKFKGLmpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR 1006
Cdd:COG4942 174 AELEALLAEL--EEERAALEALKAERQKLLARLEKELAELAAELAELQQEA 222
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
310-885 |
5.67e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 310 MKTKMMEAKFSEEKLKLQKKHDAEVQKILERKNNELEELKILYKKKQTETEEtvrkLEKKVQILIRDCQVIRETKEN-QI 388
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEE----LENELNLLEKEKLNIQKNIDKiKN 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 389 TELKKICEQSTESLNNDWEKKLHSAVAEMEKEKFELQKHHTETIQELLEDTNVrLSKMEGDYMVQTQSTNHMIKDLEGRV 468
Cdd:TIGR04523 195 KLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE-ISNTQTQLNQLKDEQNKIKKQLSEKQ 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 469 QQLmgeaENSNLQRQKLTQeklelercyqitcsELQELKTRQNLLHTEKEhlvNDYEQNVKLLKTKYDSDINILRQEhal 548
Cdd:TIGR04523 274 KEL----EQNNKKIKELEK--------------QLNQLKSEISDLNNQKE---QDWNKELKSELKNQEKKLEEIQNQ--- 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 549 sTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKfhmeKNHLKYIYEEKVHELKS--ELDKEKEDAQRKIHKFE 626
Cdd:TIGR04523 330 -ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEK----QNEIEKLKKENQSYKQEikNLESQINDLESKIQNQE 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 627 EALKEKEEQLgrvtEVQRLQAQQADAALEEFKRQVEVTSEKVySDMKEQ---MEKVEADLSRSKSLREKQSKEFLWQLED 703
Cdd:TIGR04523 405 KLNQQKDEQI----KKLQQEKELLEKEIERLKETIIKNNSEI-KDLTNQdsvKELIIKNLDNTRESLETQLKVLSRSINK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 704 ARQRYEQQIVELKLEHEQEKThlLQQHNAEKDSLVRDHEREVENLENQLRAANMEHENQIQESKKRDAQVIADMEaqvHK 783
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKELKK--LNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF---EL 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 784 LREELINVNSHRKQQLVELgllreEEKQRAARDHETAVKKLKAESERVKMELKKtHAAETEMTLEKANSRLKQIEKEYTq 863
Cdd:TIGR04523 555 KKENLEKEIDEKNKEIEEL-----KQTQKSLKKKQEEKQELIDQKEKEKKDLIK-EIEEKEKKISSLEKELEKAKKENE- 627
|
570 580
....*....|....*....|..
gi 1958657576 864 klaKSSQIIAELQTTISSLKEE 885
Cdd:TIGR04523 628 ---KLSSIIKNIKSKKNKLKQE 646
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
700-874 |
5.77e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 700 QLEDARQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREVENLENQLRaanmEHENQIQ---ESKKRDAQVIAD 776
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ----KLEKRLLqkeENLDRKLELLEK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 777 MEAQVHKLREELINVNSHRKQQLVELGLLREEEKQRAARdhetaVKKLKAESERvKMELKKThaaETEMTLEKAnSRLKQ 856
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER-----ISGLTAEEAK-EILLEKV---EEEARHEAA-VLIKE 177
|
170 180
....*....|....*....|.
gi 1958657576 857 IEKEYTQ---KLAKssQIIAE 874
Cdd:PRK12704 178 IEEEAKEeadKKAK--EILAQ 196
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
840-1006 |
6.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 840 AAETEMTLEKANSRLKQIEKEytqkLAKSSQIIAELQTTISSLKEE--SSRQQLAAERRLQDVIQKFEDEKQQLIRDNDQ 917
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQlaALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 918 AIKALQDELETR----SNQVRSAEKKLQHKELE---AQEQM--MYIRQEYetkFKGLMPASLRQ--ELEDTISSLKSQVN 986
Cdd:COG4942 91 EIAELRAELEAQkeelAELLRALYRLGRQPPLAlllSPEDFldAVRRLQY---LKYLAPARREQaeELRADLAELAALRA 167
|
170 180
....*....|....*....|
gi 1958657576 987 FLQKRASILQEELTTYQSRR 1006
Cdd:COG4942 168 ELEAERAELEALLAELEEER 187
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
557-864 |
7.34e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 557 IEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLkyiyEEKVHELKSELDkEKEDAQRKIHKFEEALKEKEEQL 636
Cdd:COG3096 852 LAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADETL----ADRLEELREELD-AAQEAQAFIQQHGKALAQLEPLV 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 637 GRV----TEVQRLQA--QQADAALEEFKRQVEVTSEKV-------YSDMKEQMEKvEADLSrsKSLREKqskefLWQLED 703
Cdd:COG3096 927 AVLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVqrrphfsYEDAVGLLGE-NSDLN--EKLRAR-----LEQAEE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 704 ARQRYEQQivelkLEHEQEKthlLQQHNAEKDSLVRDHerevenlenqlRAANMEHENQIQESKKRDAQVIADMEAQVHK 783
Cdd:COG3096 999 ARREAREQ-----LRQAQAQ---YSQYNQVLASLKSSR-----------DAKQQTLQELEQELEELGVQADAEAEERARI 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 784 LREELINVNSHRKQQLVELgllreeEKQRAARdhetavkklkaeservkmelkkthaaETEMtlEKANSRLKQIEKEYTQ 863
Cdd:COG3096 1060 RRDELHEELSQNRSRRSQL------EKQLTRC--------------------------EAEM--DSLQKRLRKAERDYKQ 1105
|
.
gi 1958657576 864 K 864
Cdd:COG3096 1106 E 1106
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
700-914 |
8.50e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 700 QLEDARQRYEQQIVELKLEHEQEKT------HLLQQHNAEKDslVRDHEREVENLENQLRAANmehenqiqeskkRDAQV 773
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQErrealqRLAEYSWDEID--VASAEREIAELEAELERLD------------ASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 774 IADMEAQVHKLREELinvnshrkQQLVElgllREEEKQRAARDHETAVKKLKAESERVKMELKKTHAAETEMTLEKANSR 853
Cdd:COG4913 687 LAALEEQLEELEAEL--------EELEE----ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958657576 854 LKQIEKEytqklAKSSQIIAELQTTISSLKEESSRQQLAAERRLQDVIQKFEDEKQQLIRD 914
Cdd:COG4913 755 FAAALGD-----AVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDAD 810
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
830-1005 |
8.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 830 RVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQI------------IAELQTTISSLKEEssRQQL------ 891
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrlaeyswdeidVASAEREIAELEAE--LERLdassdd 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 892 --AAERRLQDVIQKFEDEKQQlIRDNDQAIKALQDELETRSNQVRSAEKKLQHKELEAQEQMmyiRQEYETKFKGLM--- 966
Cdd:COG4913 687 laALEEQLEELEAELEELEEE-LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL---RALLEERFAAALgda 762
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958657576 967 -PASLRQELEDTISSLKSQVNFLQKRasiLQEELTTYQSR 1005
Cdd:COG4913 763 vERELRENLEERIDALRARLNRAEEE---LERAMRAFNRE 799
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
296-697 |
9.81e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.95 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 296 DDHFLSRMHEKELDMKTKMMEAKFSEEKLkLQKKHDAEVQKILERKNNELEELKILYKKKQTETEETVRKLEKKVQILIR 375
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVSLEEGL-AEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQRE 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 376 DCQVIRETKENQITELKKICEQSTESLNNDWEKKLHSAVAEMEKEKFELQKhhtETIQELLEDTNVRLSKMEgdymvqtq 455
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK---EEKEEEKSELSLKEKELA-------- 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 456 stnhmikdlegrvqqLMGEAENSNLQRQKLTQEKLELERCYQITCSELQELKTRQNLLHTEKEHLVNDYEQnvKLLKTKY 535
Cdd:pfam02463 778 ---------------EEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE--ELEELAL 840
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 536 DSDINILRQEHALSTSKTSVVIEELEQNIRQLKQQVQESELQRKQQVKDQEDKFHMEKNHLKYIYEEKVHELKSELDKEK 615
Cdd:pfam02463 841 ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657576 616 EDAQRKIHKFEEALKEKEEQLGRVTEVQRLQAQQADAALEEFKRQVEVTSEKVYSDMKEQMEKVEADLSRSKSLREKQSK 695
Cdd:pfam02463 921 ERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
..
gi 1958657576 696 EF 697
Cdd:pfam02463 1001 EE 1002
|
|
| |
