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Conserved domains on  [gi|1958657369|ref|XP_038941493|]
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septin-4 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4655 super family cl25883
Domain of unknown function (DUF4655); This family of proteins is found in eukaryotes. Proteins ...
21-538 2.17e-137

Domain of unknown function (DUF4655); This family of proteins is found in eukaryotes. Proteins in this family are typically between 533 and 570 amino acids in length.


The actual alignment was detected with superfamily member pfam15548:

Pssm-ID: 434779 [Multi-domain]  Cd Length: 525  Bit Score: 408.68  E-value: 2.17e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369  21 KVAVSSHRGAEVTTSAPQRTHGY-YSSSQRAAAVSLSPppppappppapppppSSQKRAEAAS-TTHHSTSDYPRSVCPQ 98
Cdd:pfam15548   1 SGSKSAHRGSEFTSPTSQRGQGYiFASSQQSASVSGSP---------------SPQRRSEAAHpTTSHSASDSPHSVSPQ 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369  99 SGPGLSAVSTSRGTETRTRVEvprhHSPHHSPHRKNQSVQTLSSHLAGVNRTVSPVREDSTRR-TENKPGREVGYHSSMA 177
Cdd:pfam15548  66 SGPSLYTASTPRGTETRSRVE----GSRHSSPHRKSQQVQTAPSHPVSMHRNVSPVREEATRRgGEIKPGREVSCRTSST 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 178 SDAKY-RHLYFTREK--------EEDPPSKVQNPQGVKVPRRVSACPKDEAIQTEPTRR-TTAEVKSSRNVFVQEH-SSR 246
Cdd:pfam15548 142 PDAKSsRLLSFIDQKdnlesqilQEDPPSKVQNPQGVRVPRRISVYPKDEAVQTEPIRKiLTGEVRSPRSPTSPEHgSSR 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 247 TANTPQIVIRKIPPQEPEVG-HSSVLSEPKTSQKTTKLSTGLKFSVLRDLDGAPRAPPPPPPPPPPppppphpphpphpp 325
Cdd:pfam15548 222 VSADHRAAHKRIHGQESEMDpYSSVLLEPKALHKNMHLESSLKLSVLKDLDGGHRVSPRPDPESLY-------------- 287
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 326 hpplpprpERSFCIETKP-PKILIS-ETEPTVRSPPR-EREVGRKVTISPGKQSMQSPHHVTCRTVSEGTYKS------- 395
Cdd:pfam15548 288 --------KHSVSTETKPsPKVLISpEVESNVRSSTRgDNEVGRRVTISSPRQSLQPTLRPTARAMSDSPRKSlmfvtpe 359
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 396 PLYSELSPKPSTQ-------------------ATAAFELTPRPLPPRSLPKYGPDCSWWALLNPKVETPQNQS-IFDFEP 455
Cdd:pfam15548 360 SIYKQQTQRPAETnymssgpavrypepsrkpsIHAELELTPRPLPPRSLPRYGPDSSWWALLNPQVETPQSLPtTPDFEP 439
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 456 KSPPFLDPLESFYEMDSTSFCEDLMFQRDKAS--LPPSPKE-SLYRVPLTEVQKTPKCTSKQPSQGFNAFFLDVSEEMYN 532
Cdd:pfam15548 440 KSPPPLDPLLSFYEMDSIPFCEDLMFQREKASprPPPSPKEsPSQALPLREVPQAPKYTNKQPIQRFSAFFLDVSEEMYN 519

                  ....*.
gi 1958657369 533 RILWWL 538
Cdd:pfam15548 520 RVIWWL 525
 
Name Accession Description Interval E-value
DUF4655 pfam15548
Domain of unknown function (DUF4655); This family of proteins is found in eukaryotes. Proteins ...
21-538 2.17e-137

Domain of unknown function (DUF4655); This family of proteins is found in eukaryotes. Proteins in this family are typically between 533 and 570 amino acids in length.


Pssm-ID: 434779 [Multi-domain]  Cd Length: 525  Bit Score: 408.68  E-value: 2.17e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369  21 KVAVSSHRGAEVTTSAPQRTHGY-YSSSQRAAAVSLSPppppappppapppppSSQKRAEAAS-TTHHSTSDYPRSVCPQ 98
Cdd:pfam15548   1 SGSKSAHRGSEFTSPTSQRGQGYiFASSQQSASVSGSP---------------SPQRRSEAAHpTTSHSASDSPHSVSPQ 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369  99 SGPGLSAVSTSRGTETRTRVEvprhHSPHHSPHRKNQSVQTLSSHLAGVNRTVSPVREDSTRR-TENKPGREVGYHSSMA 177
Cdd:pfam15548  66 SGPSLYTASTPRGTETRSRVE----GSRHSSPHRKSQQVQTAPSHPVSMHRNVSPVREEATRRgGEIKPGREVSCRTSST 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 178 SDAKY-RHLYFTREK--------EEDPPSKVQNPQGVKVPRRVSACPKDEAIQTEPTRR-TTAEVKSSRNVFVQEH-SSR 246
Cdd:pfam15548 142 PDAKSsRLLSFIDQKdnlesqilQEDPPSKVQNPQGVRVPRRISVYPKDEAVQTEPIRKiLTGEVRSPRSPTSPEHgSSR 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 247 TANTPQIVIRKIPPQEPEVG-HSSVLSEPKTSQKTTKLSTGLKFSVLRDLDGAPRAPPPPPPPPPPppppphpphpphpp 325
Cdd:pfam15548 222 VSADHRAAHKRIHGQESEMDpYSSVLLEPKALHKNMHLESSLKLSVLKDLDGGHRVSPRPDPESLY-------------- 287
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 326 hpplpprpERSFCIETKP-PKILIS-ETEPTVRSPPR-EREVGRKVTISPGKQSMQSPHHVTCRTVSEGTYKS------- 395
Cdd:pfam15548 288 --------KHSVSTETKPsPKVLISpEVESNVRSSTRgDNEVGRRVTISSPRQSLQPTLRPTARAMSDSPRKSlmfvtpe 359
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 396 PLYSELSPKPSTQ-------------------ATAAFELTPRPLPPRSLPKYGPDCSWWALLNPKVETPQNQS-IFDFEP 455
Cdd:pfam15548 360 SIYKQQTQRPAETnymssgpavrypepsrkpsIHAELELTPRPLPPRSLPRYGPDSSWWALLNPQVETPQSLPtTPDFEP 439
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 456 KSPPFLDPLESFYEMDSTSFCEDLMFQRDKAS--LPPSPKE-SLYRVPLTEVQKTPKCTSKQPSQGFNAFFLDVSEEMYN 532
Cdd:pfam15548 440 KSPPPLDPLLSFYEMDSIPFCEDLMFQREKASprPPPSPKEsPSQALPLREVPQAPKYTNKQPIQRFSAFFLDVSEEMYN 519

                  ....*.
gi 1958657369 533 RILWWL 538
Cdd:pfam15548 520 RVIWWL 525
 
Name Accession Description Interval E-value
DUF4655 pfam15548
Domain of unknown function (DUF4655); This family of proteins is found in eukaryotes. Proteins ...
21-538 2.17e-137

Domain of unknown function (DUF4655); This family of proteins is found in eukaryotes. Proteins in this family are typically between 533 and 570 amino acids in length.


Pssm-ID: 434779 [Multi-domain]  Cd Length: 525  Bit Score: 408.68  E-value: 2.17e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369  21 KVAVSSHRGAEVTTSAPQRTHGY-YSSSQRAAAVSLSPppppappppapppppSSQKRAEAAS-TTHHSTSDYPRSVCPQ 98
Cdd:pfam15548   1 SGSKSAHRGSEFTSPTSQRGQGYiFASSQQSASVSGSP---------------SPQRRSEAAHpTTSHSASDSPHSVSPQ 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369  99 SGPGLSAVSTSRGTETRTRVEvprhHSPHHSPHRKNQSVQTLSSHLAGVNRTVSPVREDSTRR-TENKPGREVGYHSSMA 177
Cdd:pfam15548  66 SGPSLYTASTPRGTETRSRVE----GSRHSSPHRKSQQVQTAPSHPVSMHRNVSPVREEATRRgGEIKPGREVSCRTSST 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 178 SDAKY-RHLYFTREK--------EEDPPSKVQNPQGVKVPRRVSACPKDEAIQTEPTRR-TTAEVKSSRNVFVQEH-SSR 246
Cdd:pfam15548 142 PDAKSsRLLSFIDQKdnlesqilQEDPPSKVQNPQGVRVPRRISVYPKDEAVQTEPIRKiLTGEVRSPRSPTSPEHgSSR 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 247 TANTPQIVIRKIPPQEPEVG-HSSVLSEPKTSQKTTKLSTGLKFSVLRDLDGAPRAPPPPPPPPPPppppphpphpphpp 325
Cdd:pfam15548 222 VSADHRAAHKRIHGQESEMDpYSSVLLEPKALHKNMHLESSLKLSVLKDLDGGHRVSPRPDPESLY-------------- 287
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 326 hpplpprpERSFCIETKP-PKILIS-ETEPTVRSPPR-EREVGRKVTISPGKQSMQSPHHVTCRTVSEGTYKS------- 395
Cdd:pfam15548 288 --------KHSVSTETKPsPKVLISpEVESNVRSSTRgDNEVGRRVTISSPRQSLQPTLRPTARAMSDSPRKSlmfvtpe 359
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 396 PLYSELSPKPSTQ-------------------ATAAFELTPRPLPPRSLPKYGPDCSWWALLNPKVETPQNQS-IFDFEP 455
Cdd:pfam15548 360 SIYKQQTQRPAETnymssgpavrypepsrkpsIHAELELTPRPLPPRSLPRYGPDSSWWALLNPQVETPQSLPtTPDFEP 439
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958657369 456 KSPPFLDPLESFYEMDSTSFCEDLMFQRDKAS--LPPSPKE-SLYRVPLTEVQKTPKCTSKQPSQGFNAFFLDVSEEMYN 532
Cdd:pfam15548 440 KSPPPLDPLLSFYEMDSIPFCEDLMFQREKASprPPPSPKEsPSQALPLREVPQAPKYTNKQPIQRFSAFFLDVSEEMYN 519

                  ....*.
gi 1958657369 533 RILWWL 538
Cdd:pfam15548 520 RVIWWL 525
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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