NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958803940|ref|XP_038940126|]
View 

TBC1 domain family member 8 isoform X3 [Rattus norvegicus]

Protein Classification

TBC domain-containing protein( domain architecture ID 12988808)

TBC (Tre-2/Bub2/Cdc16) domain-containing protein similar to Saccharomyces cerevisiae mitotic check point protein BUB2

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PH-GRAM1_TBC1D8 cd13349
TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) ...
 171-269 2.73e-65

TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1; TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


:

Pssm-ID: 270156  Cd Length: 99  Bit Score: 209.71  E-value: 2.73e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 171 AEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFL 250
Cdd:cd13349     1 AEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLLIPWVDVQKLERTSNVFMTDTIRVTTQNKERDFSMFL 80

                          90
                  ....*....|....*....
gi 1958803940 251 NLDEVFKIMEQLADVTLRR 269
Cdd:cd13349    81 NIDEVFRIMEQLADVTLRR 99
PH-GRAM2_TBC1D8 cd13353
TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) ...
 311-406 9.41e-59

TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2; TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


:

Pssm-ID: 270160  Cd Length: 96  Bit Score: 192.36  E-value: 9.41e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 311 KEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCHVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFI 390
Cdd:cd13353     1 KEKLHEVVDCSLWTPFSRCHTAGRMYTSDSYICFASKEDGSCNVILPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFI 80

                          90
                  ....*....|....*.
gi 1958803940 391 ELKDRENLVEGLLLRL 406
Cdd:cd13353    81 ELKDRDSLVESLLARL 96
COG5210 super family cl34942
GTPase-activating protein [General function prediction only];
429-642 3.86e-30

GTPase-activating protein [General function prediction only];


The actual alignment was detected with superfamily member COG5210:

Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 124.53  E-value: 3.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 429 PVFYSTSICTDKFgdleMVSSQSSEE-----REKEKSPLPHPEPLT-AVFQQSGSQS--PDSRLSREQIKIS-------- 492
Cdd:COG5210   100 SAVVSNFGLNNKS----LKSQSTSPElpkrlKDSLPTHLPEASSTEkDFSSFKGSSSlnSNPELNKEINELSlkeepqkl 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 493 ---------LWNDHFAEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYG---NLVEQSLGRCCL 560
Cdd:COG5210   176 ryyelaadkLWISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYErllNLHREAKIPTQE 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 561 VTEEIERDLHRSLPEHPAFQNETGIAA--LRRVLTAYAHRNPKIGYCQSMNILTSVLLLY-AKEEEAFWLLVAVCER-ML 636
Cdd:COG5210   256 IISQIEKDLSRTFPDNSLFQTEISIRAenLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVlESEEQAFWCLVKLLKNyGL 335


                  ....*.
gi 1958803940 637 PDYFNH 642
Cdd:COG5210   336 PGYFLK 341
 
Name Accession Description Interval E-value
PH-GRAM1_TBC1D8 cd13349
TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) ...
 171-269 2.73e-65

TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1; TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270156  Cd Length: 99  Bit Score: 209.71  E-value: 2.73e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 171 AEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFL 250
Cdd:cd13349     1 AEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLLIPWVDVQKLERTSNVFMTDTIRVTTQNKERDFSMFL 80

                          90
                  ....*....|....*....
gi 1958803940 251 NLDEVFKIMEQLADVTLRR 269
Cdd:cd13349    81 NIDEVFRIMEQLADVTLRR 99
PH-GRAM2_TBC1D8 cd13353
TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) ...
 311-406 9.41e-59

TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2; TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270160  Cd Length: 96  Bit Score: 192.36  E-value: 9.41e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 311 KEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCHVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFI 390
Cdd:cd13353     1 KEKLHEVVDCSLWTPFSRCHTAGRMYTSDSYICFASKEDGSCNVILPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFI 80

                          90
                  ....*....|....*.
gi 1958803940 391 ELKDRENLVEGLLLRL 406
Cdd:cd13353    81 ELKDRDSLVESLLARL 96
COG5210 COG5210
GTPase-activating protein [General function prediction only];
429-642 3.86e-30

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 124.53  E-value: 3.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 429 PVFYSTSICTDKFgdleMVSSQSSEE-----REKEKSPLPHPEPLT-AVFQQSGSQS--PDSRLSREQIKIS-------- 492
Cdd:COG5210   100 SAVVSNFGLNNKS----LKSQSTSPElpkrlKDSLPTHLPEASSTEkDFSSFKGSSSlnSNPELNKEINELSlkeepqkl 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 493 ---------LWNDHFAEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYG---NLVEQSLGRCCL 560
Cdd:COG5210   176 ryyelaadkLWISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYErllNLHREAKIPTQE 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 561 VTEEIERDLHRSLPEHPAFQNETGIAA--LRRVLTAYAHRNPKIGYCQSMNILTSVLLLY-AKEEEAFWLLVAVCER-ML 636
Cdd:COG5210   256 IISQIEKDLSRTFPDNSLFQTEISIRAenLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVlESEEQAFWCLVKLLKNyGL 335


                  ....*.
gi 1958803940 637 PDYFNH 642
Cdd:COG5210   336 PGYFLK 341
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
 520-642 3.16e-29

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 115.48  E-value: 3.16e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940  520 GIPESLRGRLWLLFSDA-VTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEHPAFQ--NETGIAALRRVLTAYA 596
Cdd:smart00164   4 GVPPSLRGVVWKLLLNAqPMDTSADKDLYSRLLKETAPDDKSIVHQIEKDLRRTFPEHSFFQdkEGPGQESLRRVLKAYA 83

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1958803940  597 HRNPKIGYCQSMNILTSVLLLY-AKEEEAFWLLVAVCERMLPDYFNH 642
Cdd:smart00164  84 LYNPEVGYCQGMNFLAAPLLLVmEDEEDAFWCLVKLMERYGPNFYLP 130
GRAM pfam02893
GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other ...
 300-411 6.08e-24

GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Note the alignment is lacking the last two beta strands and alpha helix.


Pssm-ID: 397160  Cd Length: 112  Bit Score: 97.05  E-value: 6.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 300 EFFRAFFRLPRKEKLHAVVDCSLWTPFsrCHTAGRIFSSDSYICFASREDG-CCHVVLPLREVVSIEKME-DTSLLPNPI 377
Cdd:pfam02893   1 ELFRKKFKLPPEERLIASYSCYLNRDG--GPVQGRLYLTNYRLCFRSLPKGwSTKVVIPLVDIEEIEKLKgGANLFPNGI 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958803940 378 IVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHA 411
Cdd:pfam02893  79 QVETGSNDKFSFAGFVTRDEAIEFILALLKNAHP 112
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
 565-643 6.62e-23

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 96.17  E-value: 6.62e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 565 IERDLHRSLPEHPAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLL-YAKEEEAFWLLVAVCER-MLPDYFNH 642
Cdd:pfam00566  12 IEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLvYLDEEDAFWCFVSLLENyLLRDFYTP 91


                  .
gi 1958803940 643 R 643
Cdd:pfam00566  92 D 92
GRAM pfam02893
GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other ...
 161-262 1.37e-16

GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Note the alignment is lacking the last two beta strands and alpha helix.


Pssm-ID: 397160  Cd Length: 112  Bit Score: 75.87  E-value: 1.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 161 KFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSN--VFLTDTIRIT 238
Cdd:pfam02893   2 LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDIEEIEKLKGgaNLFPNGIQVE 81

                          90       100
                  ....*....|....*....|....*
gi 1958803940 239 TQNKERD-FSTFLNLDEVFKIMEQL 262
Cdd:pfam02893  82 TGSNDKFsFAGFVTRDEAIEFILAL 106
GRAM smart00568
domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;
169-227 1.10e-14

domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;


Pssm-ID: 214725 [Multi-domain]  Cd Length: 60  Bit Score: 68.77  E-value: 1.10e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958803940  169 PEAEKLVTYYSCCCWKgRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTS 227
Cdd:smart00568   3 PEEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60
GRAM smart00568
domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;
307-367 7.45e-14

domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;


Pssm-ID: 214725 [Multi-domain]  Cd Length: 60  Bit Score: 66.46  E-value: 7.45e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958803940  307 RLPRKEKLHAVVDCSLWTpfsRCHTAGRIFSSDSYICFAS-REDGCCHVVLPLREVVSIEKM 367
Cdd:smart00568   1 KLPEEEKLIADYSCYLSR---TGPVQGRLYISNYRLCFRSnLPGKLTKVVIPLADITRIEKS 59
 
Name Accession Description Interval E-value
PH-GRAM1_TBC1D8 cd13349
TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) ...
 171-269 2.73e-65

TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1; TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270156  Cd Length: 99  Bit Score: 209.71  E-value: 2.73e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 171 AEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFL 250
Cdd:cd13349     1 AEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLLIPWVDVQKLERTSNVFMTDTIRVTTQNKERDFSMFL 80

                          90
                  ....*....|....*....
gi 1958803940 251 NLDEVFKIMEQLADVTLRR 269
Cdd:cd13349    81 NIDEVFRIMEQLADVTLRR 99
PH-GRAM2_TBC1D8 cd13353
TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) ...
 311-406 9.41e-59

TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2; TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270160  Cd Length: 96  Bit Score: 192.36  E-value: 9.41e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 311 KEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCHVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFI 390
Cdd:cd13353     1 KEKLHEVVDCSLWTPFSRCHTAGRMYTSDSYICFASKEDGSCNVILPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFI 80

                          90
                  ....*....|....*.
gi 1958803940 391 ELKDRENLVEGLLLRL 406
Cdd:cd13353    81 ELKDRDSLVESLLARL 96
PH-GRAM1_TCB1D8_TCB1D9_family cd13217
TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators ...
 171-269 1.13e-51

TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1; TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275404  Cd Length: 99  Bit Score: 173.39  E-value: 1.13e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 171 AEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFL 250
Cdd:cd13217     1 EEKLVTYYSCSYWKGRVPRQGWLYLSINHLCFYSFLLGSESKLIIRWTEVSDLERTSNTILTDTIKVNTRSKEHPFSMFL 80

                          90
                  ....*....|....*....
gi 1958803940 251 NLDEVFKIMEQLADVTLRR 269
Cdd:cd13217    81 NISETFKLMEQLAQIPDRP 99
PH-GRAM1_TCB1D9_TCB1D9B cd13351
TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin ...
 172-269 2.31e-48

TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1; TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275420  Cd Length: 99  Bit Score: 164.49  E-value: 2.31e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 172 EKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFLN 251
Cdd:cd13351     2 EKLVNYYSCSYWKGRVPRQGWLYLSVNHLCFYSFLLGKEAKLVIRWTDVTQLEKNNSLLLPDSIKVVTRDKEHYFSMFLN 81

                          90
                  ....*....|....*...
gi 1958803940 252 LDEVFKIMEQLADVTLRR 269
Cdd:cd13351    82 ISETFKLMEQLANLAMRQ 99
PH-GRAM2_TCB1D8_TCB1D9_family cd13218
TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators ...
 311-406 3.61e-48

TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2; TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275405  Cd Length: 96  Bit Score: 163.92  E-value: 3.61e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 311 KEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCHVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFI 390
Cdd:cd13218     1 EEKLKEVHDCFLWTPFSHFHTHGKMFISENYICFASKEGNLCSVIIPLREVLAIEKTNDSSVLPKPVIISIKGKMAFRFS 80

                          90
                  ....*....|....*.
gi 1958803940 391 ELKDRENLVEGLLLRL 406
Cdd:cd13218    81 ELKDRDELVAKLRLKL 96
PH-GRAM1_TBC1D8B cd13350
TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like ...
 172-269 8.67e-41

TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1; TBC1D8B may act as a GTPase-activating protein for Rab family protein(s). TBC1D8B contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275419  Cd Length: 99  Bit Score: 143.92  E-value: 8.67e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 172 EKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFLN 251
Cdd:cd13350     2 EKLVTYYSCSYWRGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDEISKLEKTSNVILTESIHVCSRGEDHYFSMFLH 81

                          90
                  ....*....|....*...
gi 1958803940 252 LDEVFKIMEQLADVTLRR 269
Cdd:cd13350    82 INETFLLMEQLANYAVRR 99
COG5210 COG5210
GTPase-activating protein [General function prediction only];
429-642 3.86e-30

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 124.53  E-value: 3.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 429 PVFYSTSICTDKFgdleMVSSQSSEE-----REKEKSPLPHPEPLT-AVFQQSGSQS--PDSRLSREQIKIS-------- 492
Cdd:COG5210   100 SAVVSNFGLNNKS----LKSQSTSPElpkrlKDSLPTHLPEASSTEkDFSSFKGSSSlnSNPELNKEINELSlkeepqkl 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 493 ---------LWNDHFAEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYG---NLVEQSLGRCCL 560
Cdd:COG5210   176 ryyelaadkLWISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYErllNLHREAKIPTQE 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 561 VTEEIERDLHRSLPEHPAFQNETGIAA--LRRVLTAYAHRNPKIGYCQSMNILTSVLLLY-AKEEEAFWLLVAVCER-ML 636
Cdd:COG5210   256 IISQIEKDLSRTFPDNSLFQTEISIRAenLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVlESEEQAFWCLVKLLKNyGL 335


                  ....*.
gi 1958803940 637 PDYFNH 642
Cdd:COG5210   336 PGYFLK 341
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
 520-642 3.16e-29

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 115.48  E-value: 3.16e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940  520 GIPESLRGRLWLLFSDA-VTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEHPAFQ--NETGIAALRRVLTAYA 596
Cdd:smart00164   4 GVPPSLRGVVWKLLLNAqPMDTSADKDLYSRLLKETAPDDKSIVHQIEKDLRRTFPEHSFFQdkEGPGQESLRRVLKAYA 83

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1958803940  597 HRNPKIGYCQSMNILTSVLLLY-AKEEEAFWLLVAVCERMLPDYFNH 642
Cdd:smart00164  84 LYNPEVGYCQGMNFLAAPLLLVmEDEEDAFWCLVKLMERYGPNFYLP 130
PH-GRAM2_TCB1D9_TCB1D9B cd13354
TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin ...
 312-400 1.42e-27

TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2; TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270161  Cd Length: 97  Bit Score: 106.58  E-value: 1.42e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 312 EKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCHVVLPLREVVSIEKMEDTS-LLPNPIIVSIRSKMAFQFI 390
Cdd:cd13354     2 EKLDGSTDCTLWTPYNKRHVWGTLYLSQNYICFTSKVRDLVSLVIPLREVTSVEKADSSSvSLPNGILITTKSKMTFLFA 81

                          90
                  ....*....|
gi 1958803940 391 ELKDRENLVE 400
Cdd:cd13354    82 QIKDRDFLVH 91
GRAM pfam02893
GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other ...
 300-411 6.08e-24

GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Note the alignment is lacking the last two beta strands and alpha helix.


Pssm-ID: 397160  Cd Length: 112  Bit Score: 97.05  E-value: 6.08e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 300 EFFRAFFRLPRKEKLHAVVDCSLWTPFsrCHTAGRIFSSDSYICFASREDG-CCHVVLPLREVVSIEKME-DTSLLPNPI 377
Cdd:pfam02893   1 ELFRKKFKLPPEERLIASYSCYLNRDG--GPVQGRLYLTNYRLCFRSLPKGwSTKVVIPLVDIEEIEKLKgGANLFPNGI 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958803940 378 IVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHA 411
Cdd:pfam02893  79 QVETGSNDKFSFAGFVTRDEAIEFILALLKNAHP 112
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
 565-643 6.62e-23

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 96.17  E-value: 6.62e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 565 IERDLHRSLPEHPAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLL-YAKEEEAFWLLVAVCER-MLPDYFNH 642
Cdd:pfam00566  12 IEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLvYLDEEDAFWCFVSLLENyLLRDFYTP 91


                  .
gi 1958803940 643 R 643
Cdd:pfam00566  92 D 92
PH-GRAM_GRAMDC cd13220
GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like ...
 170-262 2.73e-22

GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain; The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275406  Cd Length: 94  Bit Score: 91.41  E-value: 2.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 170 EAEKLVTYYSCCcWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFL-TDTIRITTQNKERDFST 248
Cdd:cd13220     1 EDERLIDDFSCA-LQRDILLQGRLYISENHLCFYSNIFGWETKLVIPFKDITSIEKKKTALIfPNAIEITTKGEKYFFTS 79

                          90
                  ....*....|....
gi 1958803940 249 FLNLDEVFKIMEQL 262
Cdd:cd13220    80 FLSRDSAYKLLTRV 93
PH-GRAM2_TBC1D8B cd13352
TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like ...
 311-405 1.74e-20

TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2; TBC1D8B may act as a GTPase-activating protein for Rab family protein(s). TBC1D8B contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270159  Cd Length: 93  Bit Score: 86.44  E-value: 1.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 311 KEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCHVVLPLREVVSIEKMEDTSllpNPIIVSIRSKMAFQFI 390
Cdd:cd13352     1 EETLKEVHECFLWVPFSHFNTHGKMCISENYICFASQDGSLCSVIIPLREVLSIDKTDDSS---RAVTISTKGKRAFRFT 77

                          90
                  ....*....|....*
gi 1958803940 391 ELKDRENLVEGLLLR 405
Cdd:cd13352    78 EVKDFEQLVAKLRLK 92
GRAM pfam02893
GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other ...
 161-262 1.37e-16

GRAM domain; The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Note the alignment is lacking the last two beta strands and alpha helix.


Pssm-ID: 397160  Cd Length: 112  Bit Score: 75.87  E-value: 1.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 161 KFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSN--VFLTDTIRIT 238
Cdd:pfam02893   2 LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDIEEIEKLKGgaNLFPNGIQVE 81

                          90       100
                  ....*....|....*....|....*
gi 1958803940 239 TQNKERD-FSTFLNLDEVFKIMEQL 262
Cdd:pfam02893  82 TGSNDKFsFAGFVTRDEAIEFILAL 106
GRAM smart00568
domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;
169-227 1.10e-14

domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;


Pssm-ID: 214725 [Multi-domain]  Cd Length: 60  Bit Score: 68.77  E-value: 1.10e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958803940  169 PEAEKLVTYYSCCCWKgRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTS 227
Cdd:smart00568   3 PEEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60
GRAM smart00568
domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;
307-367 7.45e-14

domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins;


Pssm-ID: 214725 [Multi-domain]  Cd Length: 60  Bit Score: 66.46  E-value: 7.45e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958803940  307 RLPRKEKLHAVVDCSLWTpfsRCHTAGRIFSSDSYICFAS-REDGCCHVVLPLREVVSIEKM 367
Cdd:smart00568   1 KLPEEEKLIADYSCYLSR---TGPVQGRLYISNYRLCFRSnLPGKLTKVVIPLADITRIEKS 59
PH-GRAM cd10570
Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins ...
 172-262 5.40e-12

Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain; Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275393  Cd Length: 94  Bit Score: 62.40  E-value: 5.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 172 EKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLE-RTSNVFLTDTIRITTQNKERDFSTFL 250
Cdd:cd10570     2 EKLGVRFCCALRPRKLPLEGTLYLSTYRLIFSSKADGDETKLVIPLVDITDVEkIAGASFLPSGLIITCKDFRTIKFSFD 81

                          90
                  ....*....|...
gi 1958803940 251 NLDEVFK-IMEQL 262
Cdd:cd10570    82 SEDEAVKvIARVL 94
PH-GRAM_C2-GRAM cd13219
C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like ...
 172-238 1.09e-08

C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain; C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270039 [Multi-domain]  Cd Length: 111  Bit Score: 53.24  E-value: 1.09e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958803940 172 EKLVTYYSCCCwKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRIT 238
Cdd:cd13219     2 EFLINDFSCAL-KRKFLYQGRMFLSARHIGFHSNVFGKKTKFVFLWEDIEEIQESPHSLINPAIVIT 67
PH-GRAM2_AGT26 cd13216
Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, ...
 172-260 5.32e-07

Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2; ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 275403  Cd Length: 93  Bit Score: 47.96  E-value: 5.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958803940 172 EKLVTYYSCCCWKGrVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKL-ERTSNVFLTDTIRITTQNKER---DFS 247
Cdd:cd13216     2 EKLIASYYCYLIRV-LPVYGKLYVSNNYLCFRSLLPGVSTKMILPLRDIENVeKEKGFRFGYSGLVIVIKGHEElffEFS 80

                          90
                  ....*....|...
gi 1958803940 248 TFLNLDEVFKIME 260
Cdd:cd13216    81 SKSSRDDCERLLL 93
PH-GRAM cd10570
Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins ...
 312-389 9.25e-06

Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain; Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275393  Cd Length: 94  Bit Score: 44.68  E-value: 9.25e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958803940 312 EKLHAVVDCSLWTpfSRCHTAGRIFSSDSYICFASREDGC-CHVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQF 389
Cdd:cd10570     2 EKLGVRFCCALRP--RKLPLEGTLYLSTYRLIFSSKADGDeTKLVIPLVDITDVEKIAGASFLPSGLIITCKDFRTIKF 78
PH-GRAM2_TCB1D9_TCB1D9B cd13354
TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin ...
 191-250 1.25e-04

TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2; TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the second repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270161  Cd Length: 97  Bit Score: 41.48  E-value: 1.25e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958803940 191 GWLYLSINHLCFYSFFLGkELKLVIPWVDIQKLER--TSNVFLTDTIRITTQNK---------ERDF-----STFL 250
Cdd:cd13354    23 GTLYLSQNYICFTSKVRD-LVSLVIPLREVTSVEKadSSSVSLPNGILITTKSKmtflfaqikDRDFlvhkiSDFL 97
PH-GRAM_GRAMDC4 cd13221
GRAM domain-containing protein 4 (GRAMDC4) Pleckstrin Homology-Glucosyltransferases, Rab-like ...
 189-225 2.90e-03

GRAM domain-containing protein 4 (GRAMDC4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain; GRAMDC4 is a membrane protein. Nothing is known about its function. Paralogs include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, and GRAMDC-like proteins. It contains a single PH-GRAM domain at its N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 270041  Cd Length: 104  Bit Score: 37.70  E-value: 2.90e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1958803940 189 RQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLER 225
Cdd:cd13221    24 RNGRLYLTENYLCFESSSSSSKKNVVIPLTDITRIEK 60
PH-GRAM_GRAMDC cd13220
GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like ...
 333-384 3.80e-03

GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain; The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold.


Pssm-ID: 275406  Cd Length: 94  Bit Score: 37.10  E-value: 3.80e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958803940 333 GRIFSSDSYICFAS----REDgccHVVLPLREVVSIEKMEDTSLLPNPIIVSIRSK 384
Cdd:cd13220    21 GRLYISENHLCFYSnifgWET---KLVIPFKDITSIEKKKTALIFPNAIEITTKGE 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH