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Conserved domains on  [gi|1958647868|ref|XP_038940024|]
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spindlin interactor and repressor of chromatin-binding protein isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-C2H2_12 pfam18658
Spin-doc zinc-finger; This is a zinc finger domain C2H2 type which can be found in SPIN1 ...
 36-100 2.18e-26

Spin-doc zinc-finger; This is a zinc finger domain C2H2 type which can be found in SPIN1 docking protein (SPIN-DOC) and Epm2a-interacting protein 1 (Epm2aip1). SPIN-DOC is a Spindlin1 (SPIN1) regulator that directly binds and strongly disrupts its histone methylation reading ability, causing it to disassociate from chromatin. Epm2aip1 is a glycogen synthase (GS)-associated protein. In the absence of Epm2aip1, the sensitivity of the liver to insulin, in which GS is a principal actor, is impaired.


:

Pssm-ID: 465831  Cd Length: 64  Bit Score: 99.66  E-value: 2.18e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958647868  36 QVSWEQEFLVGNSPGGsGRALCMVCGAEIRSPSADTARTHILEQHPHTLDLSPSEKSNILEAWSE 100
Cdd:pfam18658   1 QERWRLEYLMDYDPGR-NGLVCMVCGESLASLKLSTIKRHILQKHPDTLSLSPEEKEAILEAWEE 64
 
Name Accession Description Interval E-value
zf-C2H2_12 pfam18658
Spin-doc zinc-finger; This is a zinc finger domain C2H2 type which can be found in SPIN1 ...
 36-100 2.18e-26

Spin-doc zinc-finger; This is a zinc finger domain C2H2 type which can be found in SPIN1 docking protein (SPIN-DOC) and Epm2a-interacting protein 1 (Epm2aip1). SPIN-DOC is a Spindlin1 (SPIN1) regulator that directly binds and strongly disrupts its histone methylation reading ability, causing it to disassociate from chromatin. Epm2aip1 is a glycogen synthase (GS)-associated protein. In the absence of Epm2aip1, the sensitivity of the liver to insulin, in which GS is a principal actor, is impaired.


Pssm-ID: 465831  Cd Length: 64  Bit Score: 99.66  E-value: 2.18e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958647868  36 QVSWEQEFLVGNSPGGsGRALCMVCGAEIRSPSADTARTHILEQHPHTLDLSPSEKSNILEAWSE 100
Cdd:pfam18658   1 QERWRLEYLMDYDPGR-NGLVCMVCGESLASLKLSTIKRHILQKHPDTLSLSPEEKEAILEAWEE 64
 
Name Accession Description Interval E-value
zf-C2H2_12 pfam18658
Spin-doc zinc-finger; This is a zinc finger domain C2H2 type which can be found in SPIN1 ...
 36-100 2.18e-26

Spin-doc zinc-finger; This is a zinc finger domain C2H2 type which can be found in SPIN1 docking protein (SPIN-DOC) and Epm2a-interacting protein 1 (Epm2aip1). SPIN-DOC is a Spindlin1 (SPIN1) regulator that directly binds and strongly disrupts its histone methylation reading ability, causing it to disassociate from chromatin. Epm2aip1 is a glycogen synthase (GS)-associated protein. In the absence of Epm2aip1, the sensitivity of the liver to insulin, in which GS is a principal actor, is impaired.


Pssm-ID: 465831  Cd Length: 64  Bit Score: 99.66  E-value: 2.18e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958647868  36 QVSWEQEFLVGNSPGGsGRALCMVCGAEIRSPSADTARTHILEQHPHTLDLSPSEKSNILEAWSE 100
Cdd:pfam18658   1 QERWRLEYLMDYDPGR-NGLVCMVCGESLASLKLSTIKRHILQKHPDTLSLSPEEKEAILEAWEE 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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