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Conserved domains on  [gi|1958799618|ref|XP_038938529|]
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transmembrane protein 108 isoform X2 [Rattus norvegicus]

Protein Classification

TMEM108 domain-containing protein( domain architecture ID 12174462)

TMEM108 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMEM108 pfam15759
TMEM108 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 63-575 0e+00

TMEM108 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 258 and 575 amino acids in length.


:

Pssm-ID: 464851 [Multi-domain]  Cd Length: 511  Bit Score: 711.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  63 VMTLSPKPDGRSSQAAATMETTvSHPEGHPPTDTVSTVMVTAAVPHPESPLPTGSPPAAMATTSSHSESRPPGDDAPaaT 142
Cdd:pfam15759   1 VVTLEPHPDGPSSQATASMQTT-PHPDGHPPTQTLSTILVTAVTPHSEGPLPTGPPPAAMATTESHSEGRPPGEAVP--T 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 143 TLPTKPAGTTTRPTVSPRVPTRRPPRPPGSSR-KGTGGSSRTFPLVPGGHSARKESQRGRNQSSTHLGPKRPLGKIFQIY 221
Cdd:pfam15759  78 ILLTKPTGATSRPTTAPTRSTTRRPPRPPGSSrKGASSSSRPVSPAPSGHLGRKEGQRGRNQSSTHLGQKRPLGKIFQIY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 222 KGNFTGSVEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSWVPPTTSLVPATDKPDLTRANQGSGPTFTSPGGEPDA 301
Cdd:pfam15759 158 KGNFTGSVEPDPSALTPRTPLWGYSSSPQPQTVSTTTAPPSTSWRPPTNPLVPAEDKPGLSRANQGSGSTFTSQGGELDT 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 302 TAASGAPDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSA 381
Cdd:pfam15759 238 TAASGAPISPQPAPVPSQKPHSDNQDGPSHSDSWLTVTPNTNRPLSASSGVFTAIQGPTQAAFDASVSAPSQGIPQGTST 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 382 TPPAPAWPSGVSESIVSPAKEEAEASPTTTDRGPRPLSTVPSTATGNFLNRLVPAGTWKPGTVANISHVAEGDKPQHRAT 461
Cdd:pfam15759 318 TPQAPTNPPGVSESTVSIAEEEATATPNMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRAT 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 462 ICLSKMDIAWVILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEP 541
Cdd:pfam15759 398 ICLSKMDIVWVILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEP 477

                         490       500       510
                  ....*....|....*....|....*....|....
gi 1958799618 542 RSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 575
Cdd:pfam15759 478 RSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 511
 
Name Accession Description Interval E-value
TMEM108 pfam15759
TMEM108 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 63-575 0e+00

TMEM108 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 258 and 575 amino acids in length.


Pssm-ID: 464851 [Multi-domain]  Cd Length: 511  Bit Score: 711.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  63 VMTLSPKPDGRSSQAAATMETTvSHPEGHPPTDTVSTVMVTAAVPHPESPLPTGSPPAAMATTSSHSESRPPGDDAPaaT 142
Cdd:pfam15759   1 VVTLEPHPDGPSSQATASMQTT-PHPDGHPPTQTLSTILVTAVTPHSEGPLPTGPPPAAMATTESHSEGRPPGEAVP--T 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 143 TLPTKPAGTTTRPTVSPRVPTRRPPRPPGSSR-KGTGGSSRTFPLVPGGHSARKESQRGRNQSSTHLGPKRPLGKIFQIY 221
Cdd:pfam15759  78 ILLTKPTGATSRPTTAPTRSTTRRPPRPPGSSrKGASSSSRPVSPAPSGHLGRKEGQRGRNQSSTHLGQKRPLGKIFQIY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 222 KGNFTGSVEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSWVPPTTSLVPATDKPDLTRANQGSGPTFTSPGGEPDA 301
Cdd:pfam15759 158 KGNFTGSVEPDPSALTPRTPLWGYSSSPQPQTVSTTTAPPSTSWRPPTNPLVPAEDKPGLSRANQGSGSTFTSQGGELDT 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 302 TAASGAPDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSA 381
Cdd:pfam15759 238 TAASGAPISPQPAPVPSQKPHSDNQDGPSHSDSWLTVTPNTNRPLSASSGVFTAIQGPTQAAFDASVSAPSQGIPQGTST 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 382 TPPAPAWPSGVSESIVSPAKEEAEASPTTTDRGPRPLSTVPSTATGNFLNRLVPAGTWKPGTVANISHVAEGDKPQHRAT 461
Cdd:pfam15759 318 TPQAPTNPPGVSESTVSIAEEEATATPNMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRAT 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 462 ICLSKMDIAWVILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEP 541
Cdd:pfam15759 398 ICLSKMDIVWVILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEP 477

                         490       500       510
                  ....*....|....*....|....*....|....
gi 1958799618 542 RSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 575
Cdd:pfam15759 478 RSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 511
PHA03247 PHA03247
large tegument protein UL36; Provisional
 36-426 1.38e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.57  E-value: 1.38e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618   36 ESLQTLPSGSPPGTMVTATHSPTRLSSVMTlsPKPDGRSSQAAATMEttvSHPEGHPPTDTVSTVMVTAAVPHPESPLPT 115
Cdd:PHA03247  2541 EELASDDAGDPPPPLPPAAPPAAPDRSVPP--PRPAPRPSEPAVTSR---ARRPDAPPQSARPRAPVDDRGDPRGPAPPS 2615

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  116 GSPPAAmattssHSESRPPGDDAPAATTLPT-KPAGTTTRPTVSPRVPTRRPPRPPGSSRKGTGGSSRTFPLVPGGHSAR 194
Cdd:PHA03247  2616 PLPPDT------HAPDPPPPSPSPAANEPDPhPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  195 KESQRGRNQSSTHLGPKRPlgkifqiykgnftgsvEPDPSALTPRTPLggyfsSTQPQTVSPATGPRSTSWVPPTTSLVP 274
Cdd:PHA03247  2690 PTVGSLTSLADPPPPPPTP----------------EPAPHALVSATPL-----PPGPAAARQASPALPAAPAPPAVPAGP 2748

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  275 ATDKPDLTRANQGSgpTFTSPGGEPDATAASGAPDSTQPAPVPSRSPHgdvqdssshsdswLAVTPDTDRPTSASSRVFT 354
Cdd:PHA03247  2749 ATPGGPARPARPPT--TAGPPAPAPPAAPAAGPPRRLTRPAVASLSES-------------RESLPSPWDPADPPAAVLA 2813

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958799618  355 AATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGVSESIVSPAKEEAEASPtttdrgPRPLSTVPSTAT 426
Cdd:PHA03247  2814 PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP------SRSPAAKPAAPA 2879
 
Name Accession Description Interval E-value
TMEM108 pfam15759
TMEM108 family; This family of proteins is found in eukaryotes. Proteins in this family are ...
 63-575 0e+00

TMEM108 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 258 and 575 amino acids in length.


Pssm-ID: 464851 [Multi-domain]  Cd Length: 511  Bit Score: 711.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  63 VMTLSPKPDGRSSQAAATMETTvSHPEGHPPTDTVSTVMVTAAVPHPESPLPTGSPPAAMATTSSHSESRPPGDDAPaaT 142
Cdd:pfam15759   1 VVTLEPHPDGPSSQATASMQTT-PHPDGHPPTQTLSTILVTAVTPHSEGPLPTGPPPAAMATTESHSEGRPPGEAVP--T 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 143 TLPTKPAGTTTRPTVSPRVPTRRPPRPPGSSR-KGTGGSSRTFPLVPGGHSARKESQRGRNQSSTHLGPKRPLGKIFQIY 221
Cdd:pfam15759  78 ILLTKPTGATSRPTTAPTRSTTRRPPRPPGSSrKGASSSSRPVSPAPSGHLGRKEGQRGRNQSSTHLGQKRPLGKIFQIY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 222 KGNFTGSVEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSWVPPTTSLVPATDKPDLTRANQGSGPTFTSPGGEPDA 301
Cdd:pfam15759 158 KGNFTGSVEPDPSALTPRTPLWGYSSSPQPQTVSTTTAPPSTSWRPPTNPLVPAEDKPGLSRANQGSGSTFTSQGGELDT 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 302 TAASGAPDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSA 381
Cdd:pfam15759 238 TAASGAPISPQPAPVPSQKPHSDNQDGPSHSDSWLTVTPNTNRPLSASSGVFTAIQGPTQAAFDASVSAPSQGIPQGTST 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 382 TPPAPAWPSGVSESIVSPAKEEAEASPTTTDRGPRPLSTVPSTATGNFLNRLVPAGTWKPGTVANISHVAEGDKPQHRAT 461
Cdd:pfam15759 318 TPQAPTNPPGVSESTVSIAEEEATATPNMTDRVPSPLSTVVSTATGNFLNRLVPAGTWKPGTAGNISHVAEGDKPQHRAT 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 462 ICLSKMDIAWVILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEP 541
Cdd:pfam15759 398 ICLSKMDIVWVILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYWNNAITMDYFNRHAVELPREIQSLETSEDQLSEP 477

                         490       500       510
                  ....*....|....*....|....*....|....
gi 1958799618 542 RSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 575
Cdd:pfam15759 478 RSPANGDYRDTGMVLVNPFCQETLFVGNDQVSEI 511
PHA03247 PHA03247
large tegument protein UL36; Provisional
 36-426 1.38e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.57  E-value: 1.38e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618   36 ESLQTLPSGSPPGTMVTATHSPTRLSSVMTlsPKPDGRSSQAAATMEttvSHPEGHPPTDTVSTVMVTAAVPHPESPLPT 115
Cdd:PHA03247  2541 EELASDDAGDPPPPLPPAAPPAAPDRSVPP--PRPAPRPSEPAVTSR---ARRPDAPPQSARPRAPVDDRGDPRGPAPPS 2615

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  116 GSPPAAmattssHSESRPPGDDAPAATTLPT-KPAGTTTRPTVSPRVPTRRPPRPPGSSRKGTGGSSRTFPLVPGGHSAR 194
Cdd:PHA03247  2616 PLPPDT------HAPDPPPPSPSPAANEPDPhPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  195 KESQRGRNQSSTHLGPKRPlgkifqiykgnftgsvEPDPSALTPRTPLggyfsSTQPQTVSPATGPRSTSWVPPTTSLVP 274
Cdd:PHA03247  2690 PTVGSLTSLADPPPPPPTP----------------EPAPHALVSATPL-----PPGPAAARQASPALPAAPAPPAVPAGP 2748

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  275 ATDKPDLTRANQGSgpTFTSPGGEPDATAASGAPDSTQPAPVPSRSPHgdvqdssshsdswLAVTPDTDRPTSASSRVFT 354
Cdd:PHA03247  2749 ATPGGPARPARPPT--TAGPPAPAPPAAPAAGPPRRLTRPAVASLSES-------------RESLPSPWDPADPPAAVLA 2813

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958799618  355 AATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGVSESIVSPAKEEAEASPtttdrgPRPLSTVPSTAT 426
Cdd:PHA03247  2814 PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP------SRSPAAKPAAPA 2879
PHA03247 PHA03247
large tegument protein UL36; Provisional
 109-442 6.45e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.10  E-value: 6.45e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  109 PESPLPTGSPPAAMattsshSESRPPGDDAPAattlPTKPAGTT--TRPTVSPRVPTRRPPRPPGSSRKGTGGSSrtfPL 186
Cdd:PHA03247  2551 PPPPLPPAAPPAAP------DRSVPPPRPAPR----PSEPAVTSraRRPDAPPQSARPRAPVDDRGDPRGPAPPS---PL 2617

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  187 VPGGHSARKESQRGRNQSSTHLGPKRPLGKIFQiykgnftgSVEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSWV 266
Cdd:PHA03247  2618 PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPE--------RPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  267 PPTTSLVPATDKPDLTRANQGSGPTFTSPGGEPDATAASGAPDSTQP-APVPSRSPHGDVQDSSSHSDSWLAVTPDTDRP 345
Cdd:PHA03247  2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPaAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  346 TSASSRvftaATGPTQAAFDASVSAPPPGIPQGPSATPPA-PAWPSGVSESIVSPAKEEAEASPTTTDrgprPLSTVPST 424
Cdd:PHA03247  2770 APPAAP----AAGPPRRLTRPAVASLSESRESLPSPWDPAdPPAAVLAPAAALPPAASPAGPLPPPTS----AQPTAPPP 2841

                          330
                   ....*....|....*...
gi 1958799618  425 ATGNFLNRLVPAGTWKPG 442
Cdd:PHA03247  2842 PPGPPPPSLPLGGSVAPG 2859
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 26-426 8.15e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 55.56  E-value: 8.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618   26 VLAVQGPSPRESLQTLPSGSPPgtmvtaTHSPTRLSSVMTLSPKPDGRSSQAAATMETTVSHPEGHPPTdtvstvmvtAA 105
Cdd:PHA03307    55 VVAGAAACDRFEPPTGPPPGPG------TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP---------PP 119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  106 VPHPESPLPTGSPPAAMATTSSHSESRPPGDDAPAATTLPTKPAGTTTRPTVSPRVPTRrpprppgssrkgtgGSSRTFP 185
Cdd:PHA03307   120 TPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS--------------PEETARA 185

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  186 LVPGGHSARKESQRGRnqsstHLGPKRPLGKIFQIYkgnfTGSVEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSW 265
Cdd:PHA03307   186 PSSPPAEPPPSTPPAA-----ASPRPPRRSSPISAS----ASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  266 VPPTTSLVpatdkpDLTRANQGSGPTFTSPGgePDATAASGAPDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVTPD-TDR 344
Cdd:PHA03307   257 LPRPAPIT------LPTRIWEASGWNGPSSR--PGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESsSSS 328

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  345 PTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGVSESIVSPAKEEAEASPTTTDRGPRPLSTVPST 424
Cdd:PHA03307   329 TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFP 408


                   ..
gi 1958799618  425 AT 426
Cdd:PHA03307   409 AG 410
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 229-427 1.45e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 229 VEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSWVPPTTSLVPATDKPDLTRANQGSGPTFTSPGGEP--------- 299
Cdd:PRK07764  588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAvpdasdggd 667

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 300 ----DATAASGAPDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRVfTAATGPTQAAFDASVSAPP--- 372
Cdd:PRK07764  668 gwpaKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA-AQGASAPSPAADDPVPLPPepd 746

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958799618 373 ----PGIPQGPSATPPAPAWPSGVSESIVSPAKEEAEASPTTTDRGPRPLSTVPSTATG 427
Cdd:PRK07764  747 dppdPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVA 805
PHA03247 PHA03247
large tegument protein UL36; Provisional
 30-390 3.37e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 3.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618   30 QGPSPRESLQTLPS----GSPPGTMVTATHSPTRLSSVMTLSPKPDGRSSQAAATMETTVSHPEGHPPT--DTVSTVMVT 103
Cdd:PHA03247  2681 QRPRRRAARPTVGSltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAtpGGPARPARP 2760

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  104 AAVPHPESPLPTGSPPA---------AMATTSSHSESRPPGDDAPAATTLPTKPAGTTTRPTVSPRVPTRRPPRPPGSSR 174
Cdd:PHA03247  2761 PTTAGPPAPAPPAAPAAgpprrltrpAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  175 KGTGGSSRTFPL----VPGGHSARKESQrgRNQSSTHLGPKRPlgKIFQIYKGNFTGSVEPDPSALTPRTPLGGYFSSTQ 250
Cdd:PHA03247  2841 PPPGPPPPSLPLggsvAPGGDVRRRPPS--RSPAAKPAAPARP--PVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  251 PQTVSPATGPRSTSWVPPTTSLVPATDKPDLTRANQGsGPTFTSPGGEPDATAASG-------APDSTQPAPVPSRSPHG 323
Cdd:PHA03247  2917 PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG-EPSGAVPQPWLGALVPGRvavprfrVPQPAPSREAPASSTPP 2995

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  324 DVQDSSSHSDSW---LAVTPDTD-RPTSASSRVF----------TAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWP 389
Cdd:PHA03247  2996 LTGHSLSRVSSWassLALHEETDpPPVSLKQTLWppddtedsdaDSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATP 3075


                   .
gi 1958799618  390 S 390
Cdd:PHA03247  3076 E 3076
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 32-390 1.33e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 48.37  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  32 PSPRE--SLQTLPSGSPPGTMVTATHSPTRLSSVMTLSPKPDGRS---SQAAATMETTVSHPEGHPPTDTVSTVMVTAAV 106
Cdd:pfam05109 492 PSPRDngTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSptlGKTSPTSAVTTPTPNATSPTPAVTTPTPNATI 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 107 PhpesPLPTGSPPAAMATTSSHSESRPPGDDAPAATTLPTKPAGTTTRPTVSPRVPTRRPPRPPGSSRKgTGGSSRTFPL 186
Cdd:pfam05109 572 P----TLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNI-TSSSTSSMSL 646

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 187 VPGGHSaRKESQRGRNQSSTHLgpkrPLGKIFQIYKGNFTGSVEPdpsALTPRTPLGGYFSSTQPQTVSPATGP--RSTS 264
Cdd:pfam05109 647 RPSSIS-ETLSPSTSDNSTSHM----PLLTSAHPTGGENITQVTP---ASTSTHHVSTSSPAPRPGTTSQASGPgnSSTS 718

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 265 WVPPTTSLVPATDKPDLTRANQGSG-----PTFTSPGGEPDATaaSGAPDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVT 339
Cdd:pfam05109 719 TKPGEVNVTKGTPPKNATSPQAPSGqktavPTVTSTGGKANST--TGGKHTTGHGARTSTEPTTDYGGDSTTPRTRYNAT 796

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958799618 340 PDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPS 390
Cdd:pfam05109 797 TYLPPSTSSKLRPRWTFTSPPVTTAQATVPVPPTSQPRFSNLSMLVLQWAS 847
PHA03247 PHA03247
large tegument protein UL36; Provisional
 32-426 2.16e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 2.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618   32 PSPRESLQTLPSGSPPGTmvTATHSPTRLSSVMTLSPKPDGRSSQAAATMETTVSHPEGHPPTDTVSTVmVTAAVPHPES 111
Cdd:PHA03247  2629 PSPSPAANEPDPHPPPTV--PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSL-TSLADPPPPP 2705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  112 PLPTGSPPAAMATTSSHSESRPPGDDAPAATTLPTKPAGTTTRPT-VSPRVPTRRPPRppgssrkgTGGSSRTFPLVPGG 190
Cdd:PHA03247  2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATpGGPARPARPPTT--------AGPPAPAPPAAPAA 2777

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  191 HSARkesqRGRNQSSTHLGPKRPlgkifqiykgnftgsVEPDPSALTPRTPLGGYFSSTQPQTVSPATGprstswVPPTT 270
Cdd:PHA03247  2778 GPPR----RLTRPAVASLSESRE---------------SLPSPWDPADPPAAVLAPAAALPPAASPAGP------LPPPT 2832

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  271 SLVPATDKPdltraNQGSGPTFTSPGGE--PDATAASGAPdSTQPAPVPSRSPHGDV----QDSSSHSDSWLAVTPDT-D 343
Cdd:PHA03247  2833 SAQPTAPPP-----PPGPPPPSLPLGGSvaPGGDVRRRPP-SRSPAAKPAAPARPPVrrlaRPAVSRSTESFALPPDQpE 2906

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  344 RPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGVSESIVSPAKEEAEAS--PTTTDRGPRPLSTV 421
Cdd:PHA03247  2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGrvAVPRFRVPQPAPSR 2986


                   ....*
gi 1958799618  422 PSTAT 426
Cdd:PHA03247  2987 EAPAS 2991
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
235-426 9.21e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 9.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 235 ALTPRTPLGGYFSSTQPQTVsPATGPRSTSWVPpttslvpatdkpdlTRANQGSGPTFTSPGGEPDATAASGAPDSTQPA 314
Cdd:PRK07003  361 AVTGGGAPGGGVPARVAGAV-PAPGARAAAAVG--------------ASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 315 PV--PSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSAS--SRVFTAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPS 390
Cdd:PRK07003  426 PPaaPAPPATADRGDDAADGDAPVPAKANARASADSRcdERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPA 505

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1958799618 391 GVSESIVSPAKEEAEASPTTTDRGPRPLSTVPSTAT 426
Cdd:PRK07003  506 AVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA 541
PHA03247 PHA03247
large tegument protein UL36; Provisional
 233-451 9.69e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 9.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  233 PSALTPRTPLGGYFSSTQPQTVSPATgPRSTSWVPPTTSLVPATDKPDltranqGSGPTFTSPGGEPDATAASG------ 306
Cdd:PHA03247  2593 PQSARPRAPVDDRGDPRGPAPPSPLP-PDTHAPDPPPPSPSPAANEPD------PHPPPTVPPPERPRDDPAPGrvsrpr 2665

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  307 ---APDSTQPAPVPSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSATP 383
Cdd:PHA03247  2666 rarRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958799618  384 PAPAWPSGVSesivSPAKEEAEASPTTTDRGPRPLSTVPSTATGNFLNRLVPAGTWKPGTVANISHVA 451
Cdd:PHA03247  2746 AGPATPGGPA----RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 290-392 1.30e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 290 PTFTSPGGEPDATAASGAPDSTQPAPVPSrSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRVFTAATGPTQAAFDASVS 369
Cdd:PRK07764  408 AAPAPAAAAPAAAAAPAPAAAPQPAPAPA-PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPA 486

                          90       100
                  ....*....|....*....|...
gi 1958799618 370 APPPGIPQGPSATPPAPAWPSGV 392
Cdd:PRK07764  487 APAPAAAPAAPAAPAAPAGADDA 509
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
237-480 1.99e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 1.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 237 TPRTPLGGYFSSTQPQTVSPATGPRSTSWVPPTTSLVPATDKPdltRANQGSGPTFTSPGGEPDATA----ASGAPDSTQ 312
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAA---ARAVAAAPARRSPAPEALAAArqasARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 313 PAPVPSRSPhgdvqdssshsdswlavTPDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPsGV 392
Cdd:PRK12323  450 PAPAPAAAP-----------------AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP-AP 511

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 393 SESIVSPAKEEAEASPTTTDRGPRPLSTVPSTAtgnflnrlvPAGTWKPGTVANISHVAEGDKPQHRATICLSKMDIAWV 472
Cdd:PRK12323  512 AQPDAAPAGWVAESIPDPATADPDDAFETLAPA---------PAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582


                  ....*...
gi 1958799618 473 ILAISVPI 480
Cdd:PRK12323  583 ALAARLPV 590
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 326-422 2.26e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 2.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618  326 QDSSSHSDSW---LAVTPDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGVSESIVSPAKE 402
Cdd:PRK12270    20 ADPNSVDPSWrefFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

                           90       100
                   ....*....|....*....|
gi 1958799618  403 EAEASPTTTDRGPRPLSTVP 422
Cdd:PRK12270   100 PAAAAAAAPAAAAVEDEVTP 119
PRK10118 PRK10118
flagellar hook length control protein FliK;
311-423 3.06e-03

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 40.23  E-value: 3.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958799618 311 TQPAPVPSRSPHGDVQDSSSHSDSWLAVTPDTDRPTSASSRvfTAATGPTqaafDASVSAPPPGIPQGPSATPPAP--AW 388
Cdd:PRK10118  153 QDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSD--EHEKGLT----SAQLTTAQPDDAPGTPAQPLTPlaAE 226

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958799618 389 PSGVSESIVSPAKEEAEASPTTTDRGPRPLSTVPS 423
Cdd:PRK10118  227 AQAKAEVISTPSPVTAAASPTITPHQTQPLPTAAA 261
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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