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Conserved domains on  [gi|1958796828|ref|XP_038937632|]
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single-pass membrane and coiled-coil domain-containing protein 4 isoform X1 [Rattus norvegicus]

Protein Classification

single-pass membrane and coiled-coil domain-containing protein 4( domain architecture ID 10633226)

single-pass membrane and coiled-coil domain-containing protein 4 (SMCO4) is a DUF4519 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4519 pfam15012
Domain of unknown function (DUF4519); This family of proteins is found in eukaryotes. Proteins ...
 127-181 2.69e-16

Domain of unknown function (DUF4519); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 59 amino acids in length. There are two conserved sequence motifs: KET and VLP. There is a single completely conserved residue P that may be functionally important.


:

Pssm-ID: 464444  Cd Length: 55  Bit Score: 69.26  E-value: 2.69e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958796828 127 MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRP 181
Cdd:pfam15012   1 MRQLKGGKTKETRKQKRERKKENKEIQEKVFTVVLPVLGVVFLLIVVYVYLKTRP 55
 
Name Accession Description Interval E-value
DUF4519 pfam15012
Domain of unknown function (DUF4519); This family of proteins is found in eukaryotes. Proteins ...
 127-181 2.69e-16

Domain of unknown function (DUF4519); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 59 amino acids in length. There are two conserved sequence motifs: KET and VLP. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 464444  Cd Length: 55  Bit Score: 69.26  E-value: 2.69e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958796828 127 MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRP 181
Cdd:pfam15012   1 MRQLKGGKTKETRKQKRERKKENKEIQEKVFTVVLPVLGVVFLLIVVYVYLKTRP 55
 
Name Accession Description Interval E-value
DUF4519 pfam15012
Domain of unknown function (DUF4519); This family of proteins is found in eukaryotes. Proteins ...
 127-181 2.69e-16

Domain of unknown function (DUF4519); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 59 amino acids in length. There are two conserved sequence motifs: KET and VLP. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 464444  Cd Length: 55  Bit Score: 69.26  E-value: 2.69e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958796828 127 MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLLIVVFVYVATRP 181
Cdd:pfam15012   1 MRQLKGGKTKETRKQKRERKKENKEIQEKVFTVVLPVLGVVFLLIVVYVYLKTRP 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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