NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958646277|ref|XP_038934839|]
View 

secretoglobin family 1C member 1 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Secretoglobin super family cl11457
Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with ...
28-87 7.87e-14

Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeric combinations, with B and C subfamilies disulphide-bridged to the E and D subfamilies, respectively. [See review by Laukaitis C.M. _ Karn R.C. (2005). Biological Journal of the Linnean Society 84, 493]. These include rat prostatic steroid-binding protein (PBP or prostatein), human mammaglobin (or heteroglobin), lipophilins, major cat allergen Fel dI, the hamster Harderian gland proteins and mouse salivary androgen-binding protein (ABP). Example of such a heterodimer: ABPalpha-like sequences are closely related to cat Fel dI chain 1, whereas ABPbeta-gamma-like sequences are closely related to Fel dI chain 2. Thus, the heterodimeric structure of ABPalpha-beta and ABPalpha-gamma is recapitulated by the sequence-similar Fel dI chains 1 and 2. This conservation of primary and quaternary structure indicates that the genome of the eutherian common ancestor of cats, rodents, and primates contained a similar gene pair.


The actual alignment was detected with superfamily member pfam01099:

Pssm-ID: 472189  Cd Length: 90  Bit Score: 62.61  E-value: 7.87e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958646277  28 EFFMEFLQTLLVGTPEElYEGPLGKYNVNDMAKAALTELKSCIDELQPVHKEQLVKLLVI 87
Cdd:pfam01099  25 PALEEVVEKFLFGSEEE-YKESLEKYNPPPEAVEAKLELKQCFDKLSNETRLNIAKLLEK 83
 
Name Accession Description Interval E-value
Uteroglobin pfam01099
Uteroglobin family; Uteroglobin is a homodimer of two identical 70 amino acid polypeptides ...
28-87 7.87e-14

Uteroglobin family; Uteroglobin is a homodimer of two identical 70 amino acid polypeptides linked by two disulphide bridges. The precise role of uteroglobin has still to be elucidated.


Pssm-ID: 460063  Cd Length: 90  Bit Score: 62.61  E-value: 7.87e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958646277  28 EFFMEFLQTLLVGTPEElYEGPLGKYNVNDMAKAALTELKSCIDELQPVHKEQLVKLLVI 87
Cdd:pfam01099  25 PALEEVVEKFLFGSEEE-YKESLEKYNPPPEAVEAKLELKQCFDKLSNETRLNIAKLLEK 83
Secretoglobin cd00633
Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with ...
28-86 4.62e-12

Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeric combinations, with B and C subfamilies disulphide-bridged to the E and D subfamilies, respectively. [See review by Laukaitis C.M. _ Karn R.C. (2005). Biological Journal of the Linnean Society 84, 493]. These include rat prostatic steroid-binding protein (PBP or prostatein), human mammaglobin (or heteroglobin), lipophilins, major cat allergen Fel dI, the hamster Harderian gland proteins and mouse salivary androgen-binding protein (ABP). Example of such a heterodimer: ABPalpha-like sequences are closely related to cat Fel dI chain 1, whereas ABPbeta-gamma-like sequences are closely related to Fel dI chain 2. Thus, the heterodimeric structure of ABPalpha-beta and ABPalpha-gamma is recapitulated by the sequence-similar Fel dI chains 1 and 2. This conservation of primary and quaternary structure indicates that the genome of the eutherian common ancestor of cats, rodents, and primates contained a similar gene pair.


Pssm-ID: 238346  Cd Length: 67  Bit Score: 57.69  E-value: 4.62e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958646277  28 EFFMEFLQTLLVGTPEElYEGPLGKYNVNDMAKAALTELKSCIDELQPVHKEQLVKLLV 86
Cdd:cd00633     2 PALESVIEGFLLGSEEE-YKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59
UTG smart00096
Uteroglobin;
30-85 1.42e-04

Uteroglobin;


Pssm-ID: 128407  Cd Length: 69  Bit Score: 37.89  E-value: 1.42e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958646277   30 FMEFLQTLLVGTPEElYEGPLGKYNVNDMAKAALTELKSCIDELQPVHKEQLVKLL 85
Cdd:smart00096   6 FKRVIELLLLGTPSS-YEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLT 60
 
Name Accession Description Interval E-value
Uteroglobin pfam01099
Uteroglobin family; Uteroglobin is a homodimer of two identical 70 amino acid polypeptides ...
28-87 7.87e-14

Uteroglobin family; Uteroglobin is a homodimer of two identical 70 amino acid polypeptides linked by two disulphide bridges. The precise role of uteroglobin has still to be elucidated.


Pssm-ID: 460063  Cd Length: 90  Bit Score: 62.61  E-value: 7.87e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958646277  28 EFFMEFLQTLLVGTPEElYEGPLGKYNVNDMAKAALTELKSCIDELQPVHKEQLVKLLVI 87
Cdd:pfam01099  25 PALEEVVEKFLFGSEEE-YKESLEKYNPPPEAVEAKLELKQCFDKLSNETRLNIAKLLEK 83
Secretoglobin cd00633
Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with ...
28-86 4.62e-12

Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeric combinations, with B and C subfamilies disulphide-bridged to the E and D subfamilies, respectively. [See review by Laukaitis C.M. _ Karn R.C. (2005). Biological Journal of the Linnean Society 84, 493]. These include rat prostatic steroid-binding protein (PBP or prostatein), human mammaglobin (or heteroglobin), lipophilins, major cat allergen Fel dI, the hamster Harderian gland proteins and mouse salivary androgen-binding protein (ABP). Example of such a heterodimer: ABPalpha-like sequences are closely related to cat Fel dI chain 1, whereas ABPbeta-gamma-like sequences are closely related to Fel dI chain 2. Thus, the heterodimeric structure of ABPalpha-beta and ABPalpha-gamma is recapitulated by the sequence-similar Fel dI chains 1 and 2. This conservation of primary and quaternary structure indicates that the genome of the eutherian common ancestor of cats, rodents, and primates contained a similar gene pair.


Pssm-ID: 238346  Cd Length: 67  Bit Score: 57.69  E-value: 4.62e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958646277  28 EFFMEFLQTLLVGTPEElYEGPLGKYNVNDMAKAALTELKSCIDELQPVHKEQLVKLLV 86
Cdd:cd00633     2 PALESVIEGFLLGSEEE-YKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59
UTG smart00096
Uteroglobin;
30-85 1.42e-04

Uteroglobin;


Pssm-ID: 128407  Cd Length: 69  Bit Score: 37.89  E-value: 1.42e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958646277   30 FMEFLQTLLVGTPEElYEGPLGKYNVNDMAKAALTELKSCIDELQPVHKEQLVKLL 85
Cdd:smart00096   6 FKRVIELLLLGTPSS-YEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLT 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH